mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 66,706 | T→C | 86.7% | intergenic (‑174/‑168) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 66,726 | T→C | 85.8% | intergenic (‑194/‑148) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 122,613 | G→A | 5.4% | K144K (AAG→AAA) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 284,986 | A→C | 11.3% | intergenic (‑113/+26) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 802,799 | C→G | 15.4% | intergenic (‑62/+90) | ybhC ← / ← ybhB | acyl‑CoA thioesterase, lipoprotein/kinase inhibitor homolog, UPF0098 family |
| RA | 930,957 | C→G | 5.8% | P760A (CCG→GCG) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 999,598 | A→C | 6.0% | T66P (ACG→CCG) | ycbF → | putative periplasmic pilin chaperone |
| RA | 1,282,421 | A→C | 9.0% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,460,356 | T→C | 11.7% | pseudogene (708/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,359 | A→G | 10.6% | pseudogene (711/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,461,166 | T→C | 5.7% | pseudogene (1518/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,461,169 | C→T | 5.9% | pseudogene (1521/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,546,448 | C→A | 8.0% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,702,966 | T→A | 10.0% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,062 | T→A | 10.8% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,158 | A→C | 14.4% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,251 | A→C | 6.2% | A692A (GCA→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,295 | T→A | 9.8% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 2,511,621 | C→G | 6.5% | intergenic (‑26/+14) | alaX ← / ← alaW | tRNA‑Ala/tRNA‑Ala |
| RA | 2,511,629 | A→T | 5.3% | intergenic (‑34/+6) | alaX ← / ← alaW | tRNA‑Ala/tRNA‑Ala |
| RA | 2,514,510 | T→A | 5.5% | intergenic (+25/‑22) | valU → / → valY | tRNA‑Val/tRNA‑Val |
| RA | 2,554,355 | G→T | 7.6% | intergenic (+98/‑372) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,711,673 | A→C | 8.8% | V72G (GTT→GGT) | yfiF ← | putative methyltransferase |
| RA | 3,263,441 | A→T | 7.3% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,460 | C→T | 8.5% | intergenic (+499/+115) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,466 | G→T | 15.5% | intergenic (+505/+109) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,579 | G→T | 11.6% | noncoding (373/377 nt) | rnpB ← | RNase P, M1 RNA component |
| RA | 3,462,400 | A→G | 7.1% | S271S (AGT→AGC) | chiA ← | periplasmic endochitinase |
| RA | 3,774,505 | C→G | 9.9% | intergenic (+128/‑70) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 4,106,456 | C→T | 19.8% | G232D (GGC→GAC) | glpK ← | glycerol kinase |
| RA | 4,106,459 | C→T | 14.3% | G231D (GGC→GAC) | glpK ← | glycerol kinase |
| RA | 4,106,586 | G→T | 23.3% | R189S (CGT→AGT) | glpK ← | glycerol kinase |
| RA | 4,106,634 | T→C | 5.5% | K173E (AAA→GAA) | glpK ← | glycerol kinase |
| RA | 4,106,944 | A→C | 6.7% | D69E (GAT→GAG) | glpK ← | glycerol kinase |
| RA | 4,106,987 | G→A | 7.6% | A55V (GCC→GTC) ‡ | glpK ← | glycerol kinase |
| RA | 4,106,988 | C→T | 6.2% | A55T (GCC→ACC) ‡ | glpK ← | glycerol kinase |
| RA | 4,382,371 | G→T | 8.7% | intergenic (+7/‑29) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| RA | 4,596,120 | C→A | 7.5% | intergenic (‑17/+12) | leuP ← / ← leuQ | tRNA‑Leu/tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 246573 | 247227 | 655 | 121 [119] | [117] 211 | lafU | pseudogene, lateral flagellar motor protein fragment |
| * | * | ÷ | CP009273 | 2597319 | 2598078 | 760 | 186 [118] | [97] 129 | hyfC | hydrogenase 4, membrane subunit |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 321 (0.910) | 18 (0.060) | 8/92 | NT | 5.6% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 338 (1.170) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
| * | ? | CP009273 | = 64557 | 257 (0.730) | 14 (0.050) | 8/94 | NT | 5.3% | coding (1224/2352 nt) | polB | DNA polymerase II |
| ? | CP009273 | = 64577 | 289 (0.980) | coding (1204/2352 nt) | polB | DNA polymerase II | |||||
| * | ? | CP009273 | 66560 = | 269 (0.760) | 1244 (5.800) +22 bp |
47/68 | NT | 85.9% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 404 (1.140) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | 221943 = | NA (NA) | 39 (0.130) | 14/94 | NT | NA | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | CP009273 | 221964 = | NA (NA) | intergenic (+20/‑23) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | CP009273 | 248296 = | 140 (0.400) | 20 (0.070) | 9/96 | NT | 12.5% | coding (912/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | 248360 = | 159 (0.530) | coding (976/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | = 248303 | 118 (0.330) | 36 (0.120) | 9/96 | NT | 21.7% | coding (919/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | = 248351 | 159 (0.530) | coding (967/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | 248326 = | 158 (0.450) | 8 (0.030) | 5/96 | NT | 5.4% | coding (942/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | 248370 = | 143 (0.470) | coding (986/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | 254726 = | NA (NA) | 5 (0.020) | 4/94 | NT | NA | intergenic (+9/+30) | crl/phoE | RNA polymerase holoenzyme assembly factor crl/outer membrane phosphoporin protein E |
| ? | CP009273 | 254749 = | NA (NA) | intergenic (+32/+7) | crl/phoE | RNA polymerase holoenzyme assembly factor crl/outer membrane phosphoporin protein E | |||||
| * | ? | CP009273 | = 282361 | 239 (0.680) | 15 (0.050) | 8/92 | NT | 5.1% | coding (1256/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter |
| ? | CP009273 | = 282393 | 366 (1.260) | coding (1288/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter | |||||
| * | ? | CP009273 | 360070 = | 278 (0.790) | 622 (2.350) +CTGATCAGTGAATT |
21/84 | NT | 74.3% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 297 (0.840) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 360096 | 288 (0.820) | 1571 (4.530) | 32/110 | NT | 83.1% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 356 (1.030) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
| * | ? | CP009273 | 360104 = | 282 (0.800) | 500 (1.420) | 60/112 | NT | 63.9% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 360168 = | NA (NA) | 58 (0.200) | 12/94 | NT | NA | intergenic (‑102/+493) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 360191 = | NA (NA) | intergenic (‑125/+470) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 376748 = | NA (NA) | 11 (0.040) | 8/94 | NT | NA | intergenic (‑33/‑59) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | 376768 = | NA (NA) | intergenic (‑53/‑39) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | = 394482 | NA (NA) | 9 (0.030) | 5/98 | NT | NA | coding (308/309 nt) | yaiY | DUF2755 family inner membrane protein |
| ? | CP009273 | = 394503 | NA (NA) | coding (287/309 nt) | yaiY | DUF2755 family inner membrane protein | |||||
| * | ? | CP009273 | = 410282 | 306 (0.870) | 32 (0.100) | 12/98 | NT | 10.1% | coding (928/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent |
| ? | CP009273 | = 410288 | 304 (0.980) | coding (922/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent | |||||
| * | ? | CP009273 | 442673 = | 313 (0.890) | 20 (0.070) | 11/90 | NT | 6.1% | coding (489/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | 442734 = | 363 (1.280) | coding (428/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | = 442683 | 305 (0.860) | 29 (0.100) | 11/90 | NT | 8.7% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 363 (1.280) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | 519440 = | 301 (0.850) | 17 (0.060) | 11/96 | NT | 5.4% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 334 (1.100) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 548176 = | 340 (0.960) | 18 (0.060) | 9/96 | NT | 5.5% | coding (381/510 nt) | purE | N5‑carboxyaminoimidazole ribonucleotide mutase |
| ? | CP009273 | 548229 = | 331 (1.090) | coding (328/510 nt) | purE | N5‑carboxyaminoimidazole ribonucleotide mutase | |||||
| * | ? | CP009273 | = 577278 | 266 (0.750) | 19 (0.060) | 9/96 | NT | 7.7% | pseudogene (163/438 nt) | tfaD | pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| ? | CP009273 | = 1426905 | NA (NA) | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
| * | ? | CP009273 | 699831 = | 300 (0.850) | 26 (0.090) | 9/96 | NT | 10.2% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 203 (0.670) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
| * | ? | CP009273 | = 725679 | NA (NA) | 9 (0.030) | 8/100 | NT | NA | coding (641/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725702 | NA (NA) | coding (664/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 728285 = | NA (NA) | 9 (0.030) | 8/108 | NT | NA | coding (3247/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 728314 = | NA (NA) | coding (3276/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 776704 | 460 (1.300) | 61 (0.180) +AAC |
5/106 | NT | 12.3% | intergenic (+26/‑121) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | = 777108 | NA (NA) | noncoding (76/76 nt) | lysQ | tRNA‑Lys | |||||
| * | ? | CP009273 | 818337 = | 432 (1.220) | 18 (0.060) | 5/98 | NT | 5.2% | coding (859/1242 nt) | clsB | cardiolipin synthase 2 |
| ? | CP009273 | 818368 = | 276 (0.890) | coding (828/1242 nt) | clsB | cardiolipin synthase 2 | |||||
| * | ? | CP009273 | = 831686 | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 841021 = | 354 (1.000) | 18 (0.060) | 6/92 | NT | 5.8% | intergenic (‑85/+176) | ybiO/glnQ | mechanosensitive channel protein, intermediate conductance/glutamine transporter subunit |
| ? | CP009273 | 841045 = | NA (NA) | intergenic (‑109/+152) | ybiO/glnQ | mechanosensitive channel protein, intermediate conductance/glutamine transporter subunit | |||||
| * | ? | CP009273 | = 902734 | 157 (0.440) | 10 (0.030) | 5/98 | NT | 6.4% | coding (1005/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | CP009273 | = 902785 | 154 (0.500) | coding (954/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | CP009273 | 904473 = | 163 (0.460) | 10 (0.030) | 5/98 | NT | 5.8% | coding (278/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent |
| ? | CP009273 | 904511 = | 182 (0.590) | coding (240/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent | |||||
| * | ? | CP009273 | 964816 = | 129 (0.370) | 10 (0.030) | 7/94 | NT | 7.4% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 143 (0.480) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
| * | ? | CP009273 | = 1092557 | NA (NA) | 8 (0.020) +GC |
6/108 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092559 | NA (NA) | intergenic (+274/+462) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | = 1092557 | NA (NA) | 21 (0.070) | 6/96 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092561 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1092949 = | NA (NA) | 11 (0.030) | 6/100 | NT | 16.6% | intergenic (+664/+72) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093045 = | 62 (0.180) | noncoding (64/88 nt) | serX | tRNA‑Ser | |||||
| * | ? | CP009273 | 1101408 = | 140 (0.400) | 20 (0.070) | 8/94 | NT | 13.8% | coding (133/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| ? | CP009273 | 1101450 = | 132 (0.450) | coding (175/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit | |||||
| * | ? | CP009273 | = 1161581 | 203 (0.570) | 7 (0.030) | 3/82 | NT | 5.2% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 106 (0.410) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | = 1161581 | 203 (0.570) | 16 (0.050) +A |
11/110 | NT | 8.8% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 136 (0.390) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | = 1171843 | 291 (0.820) | 16 (0.050) +G |
5/110 | NT | 5.8% | coding (961/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein |
| ? | CP009273 | = 1171944 | 238 (0.670) | coding (1062/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein | |||||
| * | ? | CP009273 | 1203246 = | 241 (0.680) | 87 (0.340) | 28/80 | NT | 39.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 97 (0.380) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 278 (0.790) | 80 (0.320) | 25/80 | NT | 35.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 97 (0.380) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1228601 = | 295 (0.840) | 12 (0.040) | 7/94 | NT | 5.3% | intergenic (‑115/+31) | dsbB/nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| ? | CP009273 | 1228623 = | 180 (0.610) | intergenic (‑137/+9) | dsbB/nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter | |||||
| * | ? | CP009273 | 1238033 = | 405 (1.150) | 17 (0.070) | 13/76 | NT | 7.0% | coding (504/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | CP009273 | 1238051 = | 180 (0.750) | coding (486/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | CP009273 | = 1405235 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | intergenic (+94/+35) | dbpA/ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA 2‑thiocytidine biosynthesis protein |
| ? | CP009273 | = 1405259 | NA (NA) | intergenic (+118/+11) | dbpA/ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA 2‑thiocytidine biosynthesis protein | |||||
| * | ? | CP009273 | 1433166 = | 190 (0.540) | 10 (0.030) | 5/96 | NT | 5.3% | coding (1876/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase |
| ? | CP009273 | 1433229 = | 193 (0.640) | coding (1813/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase | |||||
| * | ? | CP009273 | 1505831 = | 231 (0.650) | 11 (0.040) | 8/94 | NT | 5.3% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 200 (0.670) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
| * | ? | CP009273 | = 1821389 | 237 (0.670) | 12 (0.040) | 8/94 | NT | 5.9% | coding (1128/1344 nt) | astB | succinylarginine dihydrolase |
| ? | CP009273 | = 1821423 | 181 (0.610) | coding (1094/1344 nt) | astB | succinylarginine dihydrolase | |||||
| * | ? | CP009273 | = 1823129 | 149 (0.420) | 10 (0.030) | 8/94 | NT | 6.9% | coding (863/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | = 1823150 | 144 (0.490) | coding (842/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | CP009273 | 1834892 = | 342 (0.970) | 16 (0.050) | 6/100 | NT | 5.7% | coding (1169/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase |
| ? | CP009273 | 1834923 = | 229 (0.730) | coding (1200/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase | |||||
| * | ? | CP009273 | = 1870380 | 276 (0.780) | 12 (0.040) | 6/94 | NT | 5.0% | coding (451/1182 nt) | yeaN | putative transporter |
| ? | CP009273 | = 1870397 | 222 (0.750) | coding (468/1182 nt) | yeaN | putative transporter | |||||
| * | ? | CP009273 | = 1871532 | 275 (0.780) | 22 (0.070) | 6/96 | NT | 8.7% | intergenic (+19/+3) | yeaO/yoaF | DUF488 family protein/DUF333 family outer membrane lipoprotein |
| ? | CP009273 | = 1871547 | 228 (0.750) | coding (243/255 nt) | yoaF | DUF333 family outer membrane lipoprotein | |||||
| * | ? | CP009273 | 1958516 = | 311 (0.880) | 13 (0.040) | 6/96 | NT | 5.6% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | CP009273 | 1958598 = | 170 (0.560) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
| * | ? | CP009273 | = 2000783 | 291 (0.820) | 20 (0.070) | 9/96 | NT | 6.3% | coding (1147/1488 nt) | amyA | cytoplasmic alpha‑amylase |
| ? | CP009273 | = 2000836 | 344 (1.140) | coding (1200/1488 nt) | amyA | cytoplasmic alpha‑amylase | |||||
| * | ? | CP009273 | 2006338 = | 322 (0.910) | 16 (0.060) | 8/92 | NT | 6.4% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 205 (0.710) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
| * | ? | CP009273 | = 2067468 | 263 (0.740) | 12 (0.040) | 9/96 | NT | 5.7% | coding (2449/3120 nt) | flu | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| ? | CP009273 | = 2067481 | 170 (0.560) | coding (2462/3120 nt) | flu | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter | |||||
| * | ? | CP009273 | = 2068566 | 254 (0.720) | 13 (0.040) | 6/96 | NT | 5.0% | coding (307/1533 nt) | yeeR | CP4‑44 prophage; putative membrane protein |
| ? | CP009273 | = 2068573 | 276 (0.910) | coding (314/1533 nt) | yeeR | CP4‑44 prophage; putative membrane protein | |||||
| * | ? | CP009273 | = 2145164 | NA (NA) | 7 (0.020) | 4/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2191253 | 170 (0.480) | 13 (0.050) | 7/90 | NT | 7.2% | pseudogene (1301/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| ? | CP009273 | = 2191263 | 201 (0.710) | pseudogene (1311/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function | |||||
| * | ? | CP009273 | = 2402276 | NA (NA) | 6 (0.020) | 3/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2436000 = | 240 (0.680) | 13 (0.040) | 7/94 | NT | 5.9% | coding (758/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | 2436103 = | 217 (0.730) | coding (861/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | = 2458952 | 205 (0.580) | 11 (0.040) | 6/94 | NT | 5.7% | coding (173/933 nt) | yfdC | putative inner membrane protein |
| ? | CP009273 | = 2458965 | 191 (0.640) | coding (186/933 nt) | yfdC | putative inner membrane protein | |||||
| * | ? | CP009273 | = 2499292 | 352 (1.000) | 19 (0.060) | 10/98 | NT | 5.6% | coding (820/1086 nt) | ypdF | Xaa‑Pro aminopeptidase |
| ? | CP009273 | = 2499321 | 338 (1.090) | coding (791/1086 nt) | ypdF | Xaa‑Pro aminopeptidase | |||||
| * | ? | CP009273 | = 2540715 | 214 (0.610) | 16 (0.050) | 5/94 | NT | 6.4% | coding (684/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| ? | CP009273 | = 2540730 | 289 (0.980) | coding (699/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system | |||||
| * | ? | CP009273 | = 2543932 | 242 (0.690) | 15 (0.050) | 9/94 | NT | 6.4% | intergenic (‑28/+68) | yfeX/yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| ? | CP009273 | = 2543937 | 239 (0.810) | intergenic (‑33/+63) | yfeX/yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein | |||||
| * | ? | CP009273 | = 2640581 | 219 (0.620) | 11 (0.040) | 8/98 | NT | 5.2% | coding (104/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | = 2640609 | 208 (0.670) | coding (76/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
| * | ? | CP009273 | 2640634 = | 281 (0.800) | 18 (0.060) | 8/94 | NT | 8.3% | coding (51/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | 2640664 = | 162 (0.550) | coding (21/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
| * | ? | CP009273 | = 2657620 | 262 (0.740) | 13 (0.040) | 8/94 | NT | 5.1% | intergenic (+16/‑129) | suhB/yfhR | inositol monophosphatase/putative S9 family prolyl oligopeptidase |
| ? | CP009273 | = 2657626 | 266 (0.900) | intergenic (+22/‑123) | suhB/yfhR | inositol monophosphatase/putative S9 family prolyl oligopeptidase | |||||
| * | ? | CP009273 | = 2680401 | NA (NA) | 8 (0.030) | 3/90 | NT | NA | noncoding (8/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2680405 | NA (NA) | noncoding (12/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2732272 = | NA (NA) | 5 (0.020) | 4/88 | NT | NA | intergenic (+8/+35) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase |
| ? | CP009273 | 2732300 = | NA (NA) | intergenic (+36/+7) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase | |||||
| * | ? | CP009273 | 2747582 = | 329 (0.930) | 16 (0.050) | 5/94 | NT | 6.2% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 207 (0.700) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
| * | ? | CP009273 | = 2787501 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2787742 = | 424 (1.200) | 27 (0.090) | 10/96 | NT | 7.7% | coding (131/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| ? | CP009273 | 2787778 = | 287 (0.950) | coding (167/1401 nt) | gabP | gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2845465 = | 219 (0.620) | 15 (0.050) | 8/96 | NT | 5.7% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 311 (1.030) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
| * | ? | CP009273 | = 2974100 | NA (NA) | 8 (0.030) | 6/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 3015939 | 437 (1.240) | 24 (0.080) | 12/96 | NT | 6.4% | coding (1265/2871 nt) | xdhD | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| ? | CP009273 | = 3015996 | 324 (1.070) | coding (1322/2871 nt) | xdhD | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding | |||||
| * | ? | CP009273 | 3031308 = | 414 (1.170) | 17 (0.060) | 9/98 | NT | 5.2% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 259 (0.840) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
| * | ? | CP009273 | 3060669 = | 345 (0.980) | 12 (0.040) | 9/92 | NT | 5.0% | intergenic (‑137/+30) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| ? | CP009273 | 3060693 = | 170 (0.590) | intergenic (‑161/+6) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein | |||||
| * | ? | CP009273 | = 3202572 | 194 (0.550) | 18 (0.060) | 4/92 | NT | 11.0% | coding (1190/1464 nt) | ttdT | L‑tartrate/succinate antiporte |
| ? | CP009273 | = 3202615 | 131 (0.450) | coding (1233/1464 nt) | ttdT | L‑tartrate/succinate antiporte | |||||
| * | ? | CP009273 | 3215213 = | 204 (0.580) | 15 (0.050) | 6/96 | NT | 7.2% | coding (389/984 nt) | ebgR | transcriptional repressor |
| ? | CP009273 | 3215274 = | 211 (0.700) | coding (450/984 nt) | ebgR | transcriptional repressor | |||||
| * | ? | CP009273 | = 3348965 | 299 (0.850) | 27 (0.090) | 12/96 | NT | 9.7% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 249 (0.820) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | CP009273 | 3375198 = | 324 (0.920) | 16 (0.050) | 6/94 | NT | 6.0% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 227 (0.770) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | CP009273 | = 3462138 | 400 (1.130) | 19 (0.080) | 8/78 | NT | 5.2% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 416 (1.690) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
| * | ? | CP009273 | = 3487124 | NA (NA) | 11 (0.040) | 6/96 | NT | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3487134 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3509341 = | 536 (1.520) | 30 (0.100) | 7/94 | NT | 7.4% | intergenic (‑69/+38) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring |
| ? | CP009273 | 3509369 = | 302 (1.020) | intergenic (‑97/+10) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | = 3538010 | 287 (0.810) | 16 (0.050) | 14/94 | NT | 5.9% | coding (194/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase |
| ? | CP009273 | = 3538051 | 274 (0.920) | coding (153/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase | |||||
| * | ? | CP009273 | = 3547436 | 281 (0.800) | 17 (0.050) | 10/106 | NT | 6.0% | coding (993/2706 nt) | malT | mal regulon transcriptional activator |
| ? | CP009273 | = 3547454 | 265 (0.790) | coding (1011/2706 nt) | malT | mal regulon transcriptional activator | |||||
| * | ? | CP009273 | 3613276 = | NA (NA) | 9 (0.030) | 5/106 | NT | NA | coding (725/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3613329 = | NA (NA) | coding (778/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3614222 | NA (NA) | 4 (0.010) | 3/102 | NT | 100% | coding (1671/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3614373 | 0 (0.000) | coding (1822/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3630213 | 272 (0.770) | 30 (0.110) | 15/84 | NT | 13.1% | coding (558/1203 nt) | yhiN | putative oxidoreductase |
| ? | CP009273 | = 3630199 | 195 (0.740) | coding (572/1203 nt) | yhiN | putative oxidoreductase | |||||
| * | ? | CP009273 | = 3693271 | 207 (0.590) | 17 (0.060) | 6/94 | NT | 8.6% | intergenic (+18/+69) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small |
| ? | CP009273 | = 3693281 | 188 (0.630) | intergenic (+28/+59) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small | |||||
| * | ? | CP009273 | 3701734 = | NA (NA) | 14 (0.050) | 7/96 | NT | 11.9% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 121 (0.340) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3701786 | 94 (0.270) | 5 (0.020) | 4/88 | NT | 6.3% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | 3832491 = | 316 (0.900) | 16 (0.050) | 5/96 | NT | 6.9% | coding (884/924 nt) | yicL | EamA family inner membrane putative transporter |
| ? | CP009273 | 3832524 = | 162 (0.540) | coding (917/924 nt) | yicL | EamA family inner membrane putative transporter | |||||
| * | ? | CP009273 | 3847022 = | NA (NA) | 9 (0.030) | 6/88 | NT | NA | intergenic (+20/‑260) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| ? | CP009273 | 3847050 = | NA (NA) | intergenic (+48/‑232) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein | |||||
| * | ? | CP009273 | 3851553 = | 348 (0.990) | 32 (0.120) | 13/86 | NT | 12.3% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 188 (0.690) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | CP009273 | 3920778 = | 352 (1.000) | 28 (0.100) | 8/88 | NT | 9.9% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 234 (0.840) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | CP009273 | = 3921522 | 321 (0.910) | 22 (0.070) | 5/100 | NT | 7.0% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 302 (0.960) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
| * | ? | CP009273 | = 3935250 | 3 (0.010) | 72 (0.230) +AAGCTGT |
6/98 | NT | 96.5% | noncoding (83/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4028968 | NA (NA) | noncoding (78/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | = 3999963 | 455 (1.290) | 18 (0.060) | 8/98 | NT | 5.7% | coding (740/1830 nt) | recQ | ATP‑dependent DNA helicase |
| ? | CP009273 | = 4000007 | 195 (0.630) | coding (784/1830 nt) | recQ | ATP‑dependent DNA helicase | |||||
| * | ? | CP009273 | = 4034176 | NA (NA) | 23 (0.080) | 7/92 | NT | 8.4% | intergenic (+180/+90) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | CP009273 | = 4034200 | 306 (0.870) | intergenic (+204/+66) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | CP009273 | = 4047497 | 255 (0.720) | 26 (0.090) | 9/94 | NT | 9.7% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 271 (0.910) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
| * | ? | CP009273 | 4061067 = | 357 (1.010) | 23 (0.080) | 8/94 | NT | 8.4% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 205 (0.690) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
| * | ? | CP009273 | 4161825 = | NA (NA) | 13 (0.040) | 6/96 | NT | 100% | intergenic (+141/‑160) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | CP009273 | 4161830 = | 0 (0.000) | intergenic (+146/‑155) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | CP009273 | 4190073 = | 396 (1.120) | 57 (0.200) | 16/90 | NT | 15.3% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 311 (1.100) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | CP009273 | 4230085 = | NA (NA) | 8 (0.030) | 6/98 | NT | NA | noncoding (1/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4230118 = | NA (NA) | noncoding (34/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 4308345 | 393 (1.110) | 24 (0.080) | 9/94 | NT | 7.3% | coding (237/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| ? | CP009273 | = 4308403 | 280 (0.940) | coding (179/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein | |||||
| * | ? | CP009273 | 4315768 = | NA (NA) | 12 (0.040) | 9/98 | NT | NA | noncoding (150/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | 4315798 = | NA (NA) | noncoding (180/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | CP009273 | 4321902 = | 463 (1.310) | 17 (0.060) | 9/92 | NT | 5.2% | intergenic (+81/‑31) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator |
| ? | CP009273 | 4321930 = | 242 (0.830) | intergenic (+109/‑3) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator | |||||
| * | ? | CP009273 | 4328027 = | 170 (0.480) | 15 (0.050) | 7/96 | NT | 7.4% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 232 (0.770) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
| * | ? | CP009273 | = 4363150 | NA (NA) | 4 (0.010) | 3/96 | NT | NA | intergenic (+171/+32) | yjeI/yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| ? | CP009273 | = 4363154 | NA (NA) | intergenic (+175/+28) | yjeI/yjeJ | DUF4156 family lipoprotein/uncharacterized protein | |||||
| * | ? | CP009273 | 4501871 = | 211 (0.600) | 16 (0.060) | 7/92 | NT | 5.5% | coding (361/957 nt) | fecD | iron‑dicitrate transporter subunit |
| ? | CP009273 | 4501966 = | 379 (1.310) | coding (266/957 nt) | fecD | iron‑dicitrate transporter subunit | |||||
| * | ? | CP009273 | 4506708 = | 289 (0.820) | 21 (0.070) | 7/94 | NT | 8.4% | coding (827/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | CP009273 | 4506742 = | 215 (0.730) | coding (793/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | CP009273 | 4512275 = | 279 (0.790) | 18 (0.060) | 8/92 | NT | 6.6% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 281 (0.970) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | CP009273 | 4532499 = | 110 (0.310) | 9 (0.030) | 7/94 | NT | 7.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 141 (0.480) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 4548130 | 283 (0.800) | 26 (0.090) | 9/88 | NT | 10.8% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 206 (0.740) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | CP009273 | 4583141 = | NA (NA) | 7 (0.020) | 5/90 | NT | NA | intergenic (+12/+37) | tsr/yjjL | methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter |
| ? | CP009273 | 4583171 = | NA (NA) | intergenic (+42/+7) | tsr/yjjL | methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter | |||||