mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 310 | (T)9→8 | intergenic (+55/‑27) | thrL → / → thrA | thr operon leader peptide/fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 3,496 | A→G | E232E (GAA→GAG) | thrB → | homoserine kinase |
| RA | 15,231 | A→G | H355R (CAC→CGC) | dnaJ → | chaperone protein DnaJ |
| RA | 16,753 | A→G | *51Q (TAA→CAA) *70Q (TAA→CAA) |
hokC ← mokC ← |
protein HokC regulatory protein MokC |
| RA | 29,918 | A→G | S90G (AGC→GGC) | carA → | carbamoyl phosphate synthetase subunit alpha |
| RA | 34,120 | (T)9→8 | intergenic (+82/‑180) | carB → / → caiF | carbamoyl phosphate synthetase subunit beta/DNA‑binding transcriptional activator CaiF |
| RA | 34,807 | T→C | T189A (ACG→GCG) | caiE ← | putative transferase CaiE |
| RA | 39,357 | T→C | N344D (AAC→GAC) | caiA ← | crotonobetainyl‑CoA reductase |
| RA | 66,079 | T→C | I158V (ATC→GTC) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 83,579 | (A)7→6 | intergenic (‑50/+43) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 84,673 | T→C | G102G (GGT→GGC) | leuO → | DNA‑binding transcriptional dual regulator LeuO |
| RA | 85,841 | T→C | V71A (GTG→GCG) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 99,144 | A→G | T248A (ACC→GCC) | ftsW → | putative lipid II flippase FtsW |
| RA | 106,009 | T→C | R235R (CGT→CGC) | ftsZ → | cell division protein FtsZ |
| RA | 124,766 | A→G | T584A (ACC→GCC) | aceE → | pyruvate dehydrogenase E1 component |
| RA | 134,527 | A→G | H47R (CAC→CGC) | yacL → | UPF0231 family protein YacL |
| RA | 135,481 | A→G | G34G (GGT→GGC) | speD ← | S‑adenosylmethionine decarboxylase proenzyme |
| RA | 135,923 | C→T | C181Y (TGC→TAC) | speE ← | spermidine synthase |
| RA | 140,467 | C→T | E253E (GAG→GAA) | gcd ← | quinoprotein glucose dehydrogenase |
| RA | 142,598 | A→G | F25L (TTT→CTT) | can ← | carbonic anhydrase 2 |
| RA | 166,504 | C→T | T592I (ACC→ATC) | mrcB → | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB |
| RA | 169,743 | A→G | intergenic (+16/‑35) | fhuA → / → fhuC | ferrichrome outer membrane transporter/phage receptor/iron(III) hydroxamate ABC transporter ATP binding subunit |
| RA | 177,523 | T→C | V34V (GTA→GTG) | yadS ← | conserved inner membrane protein YadS |
| RA | 203,098 | A→G | D180G (GAC→GGC) | lpxA → | UDP‑N‑acetylglucosamine acyltransferase |
| RA | 214,585 | G→A | A99T (GCC→ACC) | yaeQ → | uncharacterized protein YaeQ |
| RA | 214,689 | T→C | Y133Y (TAT→TAC) | yaeQ → | uncharacterized protein YaeQ |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 262,313 | C→T | P271S (CCC→TCC) | proA → | glutamate‑5‑semialdehyde dehydrogenase |
| RA | 272,712 | (G)5→6 | intergenic (+58/‑135) | eyeA → / → ykfC | CP4‑6 prophage; small RNA EyeA/CP4‑6 prophage; PF00078 domain‑containing protein YkfC |
| RA | 277,660 | T→G | intergenic (+13/+96) | mmuM → / ← afuC | homocysteine S‑methyltransferase/CP4‑6 prophage; ABC transporter ATP‑binding protein AfuC |
| RA | 278,741 | A→G | V21A (GTA→GCA) | afuC ← | CP4‑6 prophage; ABC transporter ATP‑binding protein AfuC |
| RA | 293,799 | T→C | G40G (GGA→GGG) | yagL ← | CP4‑6 prophage; resolvase‑like catalytic domain‑containing protein YagL |
| RA | 301,670 | A→G | V73A (GTA→GCA) | paoB ← | aldehyde dehydrogenase, FAD‑binding subunit |
| RA | 309,710 | C→T | R106H (CGC→CAC) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 310,333 | G→A | G113G (GGC→GGT) | ecpA ← | common pilus major subunit |
| RA | 319,208 | C→T | G265D (GGT→GAT) | rclA ← | putative pyridine nucleotide‑disulfide oxidoreductase RclA |
| RA | 321,564 | (G)7→8 | intergenic (+483/‑44) | rclR → / → ykgE | DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE |
| RA | 337,142 | A→G | N122S (AAC→AGC) | yahF → | putative acyl‑CoA synthetase YahF |
| RA | 343,357 | T→C | C158C (TGT→TGC) | yahK → | aldehyde reductase, NADPH‑dependent |
| RA | 350,390 | C→T | H127Y (CAT→TAT) | prpC → | 2‑methylcitrate synthase |
| RA | 363,780 | C→T | A842A (GCG→GCA) | lacZ ← | beta‑galactosidase |
| RA | 367,852 | (GC)6→5 | coding (568‑569/834 nt) | mhpR ← | DNA‑binding transcriptional activator MhpR |
| RA | 370,220 | C→T | S537L (TCG→TTG) | mhpA → | putative 3‑(3‑hydroxyphenyl)propanoate/3‑hydroxycinnamate hydroxylase |
| RA | 372,855 | C→T | A247A (GCC→GCT) | mhpD → | 2‑hydroxypentadienoate hydratase |
| RA | 378,772 | A→G | V267A (GTC→GCC) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | 391,703 | (G)6→7 | pseudogene (1453/1458 nt) | yaiT → | putative autotransporter YaiT |
| RA | 393,177 | A→G | pseudogene (208/1449 nt) | yaiT → | putative autotransporter YaiT |
| RA | 401,893 | T→C | G49G (GGT→GGC) | phoA → | alkaline phosphatase |
| RA | 410,100 | T→C | intergenic (‑81/‑44) | rdgC ← / → mak | nucleoid‑associated protein RdgC/manno(fructo)kinase |
| RA | 415,162 | T→C | T198A (ACA→GCA) | sbcC ← | ATP dependent, structure specific DNA nuclease ‑ SbcC subunit |
| RA | 420,893 | A→G | T435A (ACC→GCC) | brnQ → | branched chain amino acid transporter BrnQ |
| RA | 433,447 | A→G | D149G (GAC→GGC) | nrdR → | NrdR transcriptional repressor |
| RA | 473,912 | C→T | A316V (GCG→GTG) | amtB → | ammonia/ammonium transporter |
| RA | 476,031 | A→G | V114A (GTA→GCA) | atl ← | DNA base‑flipping protein |
| RA | 494,736 | A→G | H111R (CAT→CGT) | recR → | DNA repair protein RecR |
| RA | 523,668 | T→C | S136S (AGT→AGC) | rhsD → | protein RhsD |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 531,988 | A→G | S78S (AGT→AGC) | allS ← | DNA‑binding transcriptional activator AllS |
| RA | 546,454 | (A)7→8 | intergenic (‑91/‑226) | allD ← / → fdrA | ureidoglycolate dehydrogenase/putative acyl‑CoA synthetase FdrA |
| RA | 553,219 | (T)6→5 | coding (722/723 nt) | lpxH ← | UDP‑2,3‑diacylglucosamine diphosphatase |
| RA | 562,803 | A→G | R156R (AGA→AGG) | sfmH → | putative fimbrial adhesin protein SfmH |
| RA | 568,195 | C→T | pseudogene (161/213 nt) | renD → | DLP12 prophage; protein RenD |
| RA | 568,239 | A→G | pseudogene (205/213 nt) | renD → | DLP12 prophage; protein RenD |
| RA | 585,935 | A→G | intergenic (‑302/+212) | ompT ← / ← envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY |
| RA | 593,357 | T→C | T472A (ACA→GCA) | cusS ← | sensory histidine kinase CusS |
| RA | 617,030 | A→G | L958L (TTA→TTG) | entF → | apo‑serine activating enzyme |
| RA | 630,875 | T→C | F328L (TTC→CTC) | cstA → | carbon starvation protein A |
| RA | 660,601 | A→G | L260L (TTA→CTA) | ybeF ← | putative LysR‑type DNA‑binding transcriptional regulator YbeF |
| MC JC | 676,374 | Δ11,477 bp | IS5‑mediated | [ybeQ]–gltI | [ybeQ], ybeR, djlB, ybeT, ybeU, djlC, hscC, rihA, gltL, gltK, gltJ, gltI |
| RA | 709,068 | G→A | G245G (GGG→GGA) | chiP → | chitobiose outer membrane channel |
| RA | 717,696 | A→G | S190S (AGT→AGC) | potE ← | putrescine:H(+) symporter/putrescine:ornithine antiporter PotE |
| RA | 764,243 | A→G | T22A (ACT→GCT) | sucD → | succinyl‑CoA synthetase subunit alpha |
| RA | 766,367 | (C)6→7 | coding (384/1977 nt) | mngA → | 2‑O‑alpha‑mannosyl‑D‑glycerate specific PTS enzyme II |
| RA | 781,812 | T→C | intergenic (+160/‑273) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase |
| RA | 874,140 | T→C | S388P (TCT→CCT) | pdeI → | putative c‑di‑GMP phosphodiesterase PdeI |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 918,591 | C→T | G177D (GGT→GAT) | ybjX ← | DUF535 domain‑containing protein YbjX |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 938,685 | T→C | V231A (GTC→GCC) | rarA → | recombination factor |
| RA | 945,893 | T→C | V8A (GTC→GCC) | ycaD → | putative transporter YcaD |
| RA | 952,608 | A→G | V316A (GTT→GCT) | pflB ← | pyruvate formate‑lyase |
| RA | 986,740 | A→G | G81G (GGT→GGC) | ompF ← | outer membrane porin F |
| RA | 991,358 | A→G | D246G (GAC→GGC) | pepN → | aminopeptidase N |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,017,932 | A→G | V123A (GTA→GCA) | ycbZ ← | putative ATP‑dependent protease YcbZ |
| RA | 1,023,368 | A→G | R172R (CGT→CGC) | yccS ← | putative transporter YccS |
| RA | 1,045,590 | C→T | A72T (GCT→ACT) | gfcE ← | putative exopolysaccharide export lipoprotein GfcE |
| RA | 1,047,955 | A→G | V246A (GTT→GCT) | gfcC ← | capsule biosynthesis GfcC family protein |
| RA | 1,052,330 | A→G | Y345H (TAC→CAC) | yccM ← | putative 4Fe‑4S membrane protein |
| RA | 1,059,367 | A→G | T38A (ACT→GCT) | torA → | trimethylamine N‑oxide reductase 1 |
| RA | 1,103,745 | (T)7→8 | intergenic (‑549/‑206) | csgD ← / → csgB | DNA‑binding transcriptional dual regulator CsgD/curlin, minor subunit |
| RA | 1,110,661 | A→G | T443A (ACC→GCC) | opgG → | osmoregulated periplasmic glucans (OPGs) biosynthesis protein G |
| RA | 1,120,223 | T→C | I122V (ATT→GTT) | solA ← | N‑methyl‑L‑tryptophan oxidase |
| RA | 1,132,417 | T→C | G188G (GGT→GGC) | flgD → | flagellar biosynthesis, initiation of hook assembly |
| RA | 1,133,535 | A→G | N321S (AAC→AGC) | flgE → | flagellar hook protein FlgE |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,168,020 | G→A | G141D (GGT→GAT) | ycfJ → | PF05433 family protein YcfJ |
| RA | 1,190,998 | A→C | V330G (GTT→GGT) | purB ← | adenylosuccinate lyase |
| RA | 1,196,817 | A→G | intergenic (+444/+50) | icd → / ← ymfD | isocitrate dehydrogenase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,212,088 | (C)8→9 | intergenic (‑85/+172) | iraM ← / ← ymgK | anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis/protein YmgK |
| RA | 1,212,933 | T→C | T59A (ACC→GCC) | ycgX ← | uncharacterized protein YcgX |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,221,752 | T→C | pseudogene (2152/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,235,586 | C→T | H217Y (CAT→TAT) | fadR → | DNA‑binding transcriptional dual regulator FadR |
| RA | 1,240,425 | A→G | K56E (AAA→GAA) F549F (TTT→TTC) |
ymgM → cvrA ← |
protein YmgM putative K(+):H(+) antiporter |
| RA | 1,245,862 | (C)6→5 | coding (1515/1698 nt) | treA ← | periplasmic trehalase |
| RA | 1,253,367 | Δ1 bp | coding (2586/2868 nt) | ycgV ← | putative autotransporter adhesin YcgV |
| RA | 1,267,217 | G→T | M98I (ATG→ATT) | ychQ → | SirB family protein YchQ |
| RA | 1,281,830 | T→C | L656P (CTG→CCG) | narG → | nitrate reductase A subunit alpha |
| RA | 1,287,326 | A→G | noncoding (3/85 nt) | tyrV ← | tRNA‑Tyr |
| RA | 1,287,514 | T→C | intergenic (‑186/+24) | tyrV ← / ← tyrT | tRNA‑Tyr/tRNA‑Tyr |
| RA | 1,299,211 | G→C | G205A (GGT→GCT) | ychE → | putative inner membrane protein |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,302,986 | G→A | A30T (GCG→ACG) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| RA | 1,303,712 | T→C | Y272H (TAT→CAT) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| RA | 1,310,097 | T→A | D58V (GAT→GTT) | kch ← | K(+) channel Kch |
| RA | 1,311,303 | A→G | E72G (GAA→GGA) | tonB → | Ton complex subunit TonB |
| RA | 1,361,590 | T→C | H157H (CAT→CAC) | puuD → | gamma‑glutamyl‑gamma‑aminobutyrate hydrolase |
| RA | 1,368,168 | T→C | R30R (CGT→CGC) | pspA → | phage shock protein A |
| RA | 1,369,805 | G→A | G39G (GGG→GGA) | pspE → | thiosulfate sulfurtransferase PspE |
| RA | 1,370,044 | (T)9→8 | intergenic (+41/‑172) | pspE → / → ycjM | thiosulfate sulfurtransferase PspE/glucosylglycerate phosphorylase |
| RA | 1,373,620 | C→T | N133N (AAC→AAT) | ycjO → | putative ABC transporter membrane subunit YcjO |
| RA | 1,376,074 | A→G | N14S (AAC→AGC) | ycjR → | putative ketohexose‑3‑epimerase YcjR |
| RA | 1,381,779 | (G)5→6 | pseudogene (959/969 nt) | ycjV → | putative ABC transporter ATP‑binding protein YcjV |
| RA | 1,390,897 | A→G | W13R (TGG→CGG) | ymjD ← | uncharacterized protein YmjD |
| RA | 1,399,985 | (C)7→9 | coding (252/516 nt) | ogt ← | methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| RA | 1,422,408 | T→C | S142S (AGT→AGC) | ydaV → | Rac prophage; putative ATP‑binding protein YdaV |
| RA | 1,429,013 | C→T | intergenic (+29/‑36) | lomR → / → stfR | Rac prophage; protein LomR_1/Rac prophage; putative membrane protein |
| RA | 1,433,681 | A→G | intergenic (‑7/+310) | pinR ← / ← ynaE | Rac prophage; putative site‑specific recombinase/Rac prophage; uncharacterized protein YnaE |
| RA | 1,438,800 | T→C | D662G (GAC→GGC) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,447,975 | (G)5→4 | coding (457/1500 nt) | feaB → | phenylacetaldehyde dehydrogenase |
| RA | 1,451,427 | A→G | intergenic (‑78/+170) | tynA ← / ← paaZ | copper‑containing amine oxidase/oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,478,201 | T→C | V194A (GTG→GCG) | ynbA → | putative inner membrane protein |
| RA | 1,481,238 | T→C | S110S (AGT→AGC) | ynbD → | putative phosphatase |
| RA | 1,495,757 | +C | coding (470/1344 nt) | ydcJ → | DUF1338 domain‑containing protein YdcJ |
| RA | 1,529,350 | Δ1 bp | pseudogene (1461/2049 nt) | rhsE → | RhsE protein in rhs element |
| RA | 1,533,261 | A→G | K70K (AAA→AAG) | pptA → | putative 4‑oxalocrotonate tautomerase (4‑OT) |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,542,818 | C→T | G415S (GGC→AGC) | narU ← | nitrate/nitrite transporter NarU |
| RA | 1,548,895 | A→G | S499G (AGC→GGC) | fdnG → | formate dehydrogenase N subunit alpha |
| RA | 1,549,816 | A→G | T806A (ACG→GCG) | fdnG → | formate dehydrogenase N subunit alpha |
| RA | 1,555,706 | (G)6→7 | intergenic (‑37/+120) | maeA ← / ← sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 |
| RA | 1,559,226 | C→A | A229S (GCC→TCC) | ddpC ← | putative D,D‑dipeptide ABC transporter membrane subunit DdpC |
| RA | 1,577,704 | C→T | V547I (GTC→ATC) | yddA ← | ABC transporter family protein YddA |
| RA | 1,580,434 | (G)5→6 | coding (357/1158 nt) | ydeM ← | putative anaerobic sulfatase maturation enzyme YdeM |
| RA | 1,584,679 | C→T | G603D (GGT→GAT) | ydeP ← | putative oxidoreductase YdeP |
| RA | 1,593,020 | G→A | pseudogene (5067/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,594,132 | (C)8→9 | pseudogene (3955/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| JC | 1,594,256 | (C)8→11 | pseudogene (3831/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,608,512 | G→A | R171C (CGC→TGC) | yneE ← | conserved inner membrane protein YneE |
| RA | 1,612,026 | T→C | Q100Q (CAA→CAG) | yneG ← | conserved protein YneG |
| RA | 1,629,024 | T→C | F225L (TTT→CTT) | ydfH → | DNA‑binding transcriptional repressor YdfH |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,702,016 | T→C | Y354H (TAT→CAT) | malY → | negative regulator of MalT activity/cystathionine beta‑lyase |
| RA | 1,714,326 | (T)9→8 | intergenic (+55/‑51) | dtpA → / → gstA | dipeptide/tripeptide:H(+) symporter DtpA/glutathione S‑transferase GstA |
| RA | 1,718,194 | T→C | I68V (ATT→GTT) | mliC ← | inhibitor of c‑type lysozyme, putative lipoprotein |
| RA | 1,728,495 | G→A | G50D (GGC→GAC) | rnt → | RNase T |
| RA | 1,755,537 | T→C | intergenic (‑396/‑161) | fumD ← / → pykF | fumarase D/pyruvate kinase I |
| RA | 1,757,564 | G→A | V48V (GTG→GTA) | lpp → | murein lipoprotein |
| RA | 1,783,511 | G→A | A179T (GCT→ACT) | fadK → | short chain acyl‑CoA synthetase |
| RA | 1,814,387 | G→A | G174D (GGC→GAC) | katE → | catalase II |
| RA | 1,836,865 | C→A | L265M (CTG→ATG) | ynjB → | putative ABC transporter periplasmic binding protein YnjB |
| RA | 1,842,809 | (T)5→6 | coding (439/1344 nt) | gdhA → | glutamate dehydrogenase |
| RA | 1,854,423 | T→C | E144E (GAA→GAG) | ydjF ← | putative DNA‑binding transcriptional regulator YdjF |
| RA | 1,855,920 | A→G | L18L (TTG→CTG) | ydjG ← | NADH‑dependent methylglyoxal reductase |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| RA | 1,876,011 | T→C | G113G (GGT→GGC) | nimT → | 2‑nitroimidazole exporter |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,880,277 | T→C | E161E (GAA→GAG) | leuE ← | leucine exporter |
| RA | 1,886,332 | C→T | P163L (CCG→CTG) | yeaX → | carnitine monooxygenase subunit YeaX |
| RA | 1,891,040 | G→A | G76G (GGC→GGT) | tsaB ← | N(6)‑L‑threonylcarbamoyladenine synthase, TsaB subunit |
| RA | 1,894,728 | A→G | F2L (TTT→CTT) | yoaH ← | UFP0181 family protein YoaH |
| RA | 1,896,063 | T→C | F420S (TTC→TCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,900,391 | T→G | T399P (ACC→CCC) | yoaE ← | putative inner membrane protein |
| RA | 1,900,530 | T→C | E352E (GAA→GAG) | yoaE ← | putative inner membrane protein |
| RA | 1,902,757 | G→A | G237D (GGC→GAC) | manX → | mannose‑specific PTS enzyme IIAB component |
| RA | 1,906,205 | T→C | V173A (GTG→GCG) | mntP → | Mn(2(+)) exporter |
| RA | 1,924,683 | A→G | L96P (CTG→CCG) | yobA ← | CopC domain‑containing protein |
| RA | 1,976,103 | G→A | S51S (AGC→AGT) | motB ← | motility protein B |
| RA | 1,977,784 | T→C | T21A (ACC→GCC) | flhC ← | DNA‑binding transcriptional dual regulator FlhC |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,994,589 | (T)6→7 | coding (118/1833 nt) | uvrC ← | excision nuclease subunit C |
| RA | 2,020,172 | T→C | V29A (GTT→GCT) | fliM → | flagellar motor switch protein FliM |
| RA | 2,021,360 | T→C | G91G (GGT→GGC) | fliN → | flagellar motor switch protein FliN |
| RA | 2,024,373 | T→C | L136L (TTA→CTA) | rcsA → | DNA‑binding transcriptional activator RcsA |
| RA | 2,032,339 | A→G | intergenic (‑22/+45) | dcm ← / ← yedJ | DNA‑cytosine methyltransferase/putative HD superfamily phosphohydrolase YedJ |
| RA | 2,062,074 | G→A | intergenic (‑141/‑186) | nac ← / → asnV | DNA‑binding transcriptional dual regulator Nac/tRNA‑Asn |
| RA | 2,083,678 | T→C | V308A (GTG→GCG) | sbcB → | exodeoxyribonuclease I |
| RA | 2,084,598 | T→C | M310V (ATG→GTG) | yeeE ← | inner membrane protein YeeE |
| RA | 2,112,050 | T→C | T338A (ACA→GCA) | rfbB ← | dTDP‑glucose 4,6‑dehydratase 1 |
| RA | 2,128,358 | T→C | E177E (GAA→GAG) | wcaF ← | putative acyl transferase |
| RA | 2,132,568 | (C)5→6 | coding (830/840 nt) | wcaA ← | putative colanic acid biosynthesis glycosyl transferase |
| RA | 2,155,279 | (C)5→6 | coding (17/3123 nt) | mdtB → | multidrug efflux pump RND permease subunit MdtB |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,195,930 | T→C | V544A (GTG→GCG) | metG → | methionine‑‑tRNA ligase |
| RA | 2,260,182 | A→G | V410A (GTA→GCA) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| RA | 2,265,637 | A→G | D63G (GAC→GGC) | yeiP → | elongation factor P family protein |
| RA | 2,268,347 | T→C | G173G (GGT→GGC) | yeiR → | zinc‑binding GTPase YeiR |
| RA | 2,271,035 | (A)7→8 | coding (310/1557 nt) | pdeN → | putative c‑di‑GMP phosphodiesterase PdeN |
| RA | 2,278,701 | +C | coding (1060/1191 nt) | bcr ← | multidrug efflux pump Bcr |
| RA | 2,288,561 | (C)7→6 | pseudogene (354/2525 nt) | yejO ← | adhesin‑like autotransporter YejO |
| RA | 2,309,422 | A→G | D328D (GAT→GAC) | ada ← | DNA‑binding transcriptional dual regulator/DNA repair protein Ada |
| RA | 2,312,141 | A→G | G203G (GGT→GGC) | ompC ← | outer membrane porin C |
| RA | 2,325,859 | A→G | G368G (GGA→GGG) | atoE → | short chain fatty acid transporter |
| RA | 2,326,925 | (C)6→7 | coding (817/1185 nt) | atoB → | acetyl‑CoA acetyltransferase |
| RA | 2,402,849 | A→G | F333L (TTC→CTC) | nuoC ← | NADH:quinone oxidoreductase subunit CD |
| RA | 2,405,417 | (C)6→7 | intergenic (‑345/+286) | nuoA ← / ← lrhA | NADH:quinone oxidoreductase subunit A/DNA‑binding transcriptional dual regulator LrhA |
| RA | 2,407,204 | G→A | intergenic (‑563/‑357) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| RA | 2,408,429 | T→C | L290P (CTA→CCA) | alaA → | glutamate‑‑pyruvate aminotransferase AlaA |
| RA | 2,418,281 | G→A | A401T (GCC→ACC) | yfcC → | putative transporter YfcC |
| RA | 2,425,237 | T→C | D227G (GAC→GGC) | hisQ ← | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, membrane subunit HisQ |
| RA | 2,437,859 | T→C | intergenic (‑8/‑91) | pdxB ← / → flk | erythronate‑4‑phosphate dehydrogenase/putative flagella assembly protein |
| RA | 2,440,162 | T→C | intergenic (‑42/+223) | yfcJ ← / ← fabB | putative transporter YfcJ/beta‑ketoacyl‑[acyl carrier protein] synthase I |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,462,889 | (C)9→10 | intergenic (+243/‑123) | fadL → / → yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| RA | 2,500,707 | A→G | T109A (ACC→GCC) | ypdB → | DNA‑binding transcriptional activator YpdB |
| RA | 2,508,092 | T→C | T51A (ACG→GCG) | fryB ← | putative PTS enzyme IIB component FryB |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,575,328 | T→C | T44A (ACG→GCG) | eutP ← | putative ethanolamine utilization protein EutP with nucleoside triphosphate hydrolase domain |
| RA | 2,585,419 | T→C | H36R (CAC→CGC) | aegA ← | putative oxidoreductase Fe‑S subunit AegA |
| RA | 2,602,017 | (C)7→8 | coding (200/2019 nt) | hyfB → | hydrogenase 4 component B |
| RA | 2,605,744 | T→C | F312L (TTC→CTC) | hyfD → | hydrogenase 4 component D |
| RA | 2,644,623 | T→C | N81S (AAC→AGC) | ndk ← | nucleoside diphosphate kinase |
| RA | 2,658,436 | C→T | G167D (GGC→GAC) | hscA ← | iron‑sulfur cluster biosynthesis chaperone HscA |
| RA | 2,669,362 | T→C | S111P (TCT→CCT) | hcaE → | putative 3‑phenylpropionate/cinnamate dioxygenase subunit alpha |
| RA | 2,700,461 | (T)5→4 | intergenic (‑264/‑59) | shoB ← / → ohsC | toxic peptide ShoB/small regulatory RNA OhsC |
| RA | 2,710,853 | T→C | V145A (GTG→GCG) | nadB → | L‑aspartate oxidase |
| RA | 2,723,976 | A→G | H417R (CAC→CGC) | pssA → | phosphatidylserine synthase |
| RA | 2,741,920 | A→G | T16A (ACG→GCG) | yfiR → | DUF4154 domain‑containing protein YfiR |
| RA | 2,745,169 | T→C | G57G (GGA→GGG) | trmD ← | tRNA m(1)G37 methyltransferase |
| RA | 2,758,296 | T→C | H102R (CAC→CGC) | yfjH ← | CP4‑57 prophage; protein YfjH |
| RA | 2,767,445 | (C)7→8 | intergenic (+90/‑265) | rnlB → / → yfjP | CP4‑57 prophage; antitoxin RnlB/CP4‑57 prophage; putative GTP‑binding protein YfjP |
| RA | 2,804,405 | T→C | S302P (TCC→CCC) | nrdF → | ribonucleoside‑diphosphate reductase 2 subunit beta |
| RA | 2,808,863 | G→A | pseudogene (548/1178 nt) | ygaY → | putative transporter YgaY, N‑terminal fragment |
| RA | 2,809,853 | T→C | A79A (GCT→GCC) | ygaZ → | L‑valine exporter subunit YgaZ |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,816,592 | (A)8→7 | coding (349/429 nt) | yqaA ← | DedA family protein YqaA |
| RA | 2,829,702 | T→C | V219A (GTT→GCT) | srlR → | DNA‑binding transcriptional repressor SrlR |
| RA | 2,834,893 | A→C | T328P (ACC→CCC) | norW → | NADH:flavorubredoxin reductase |
| RA | 2,835,501 | T→C | D642G (GAC→GGC) | hypF ← | carbamoyltransferase HypF |
| RA | 2,850,651 | A→G | H2R (CAC→CGC) | hypA → | hydrogenase 3 nickel incorporation protein HypA |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,862,697 | A→G | G121G (GGA→GGG) | ygbK → | putative 3‑oxo‑tetronate kinase YgbK |
| RA | 2,867,559 | C→T | intergenic (‑8/+55) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/murein hydrolase activator NlpD |
| RA | 2,885,998 | A→G | S408P (TCA→CCA) | cas3 ← | CRISPR‑associated endonuclease/helicase Cas3 |
| RA | 2,893,121 | T→C | G155G (GGT→GGC) | ygcN → | putative oxidoreductase with FAD/NAD(P)‑binding domain |
| RA | 2,904,097 | +G | intergenic (+723/+650) | ygcE → / ← queE | putative sugar kinase YgcE/putative 7‑carboxy‑7‑deazaguanine synthase QueE |
| RA | 2,924,416 | T→C | noncoding (109/369 nt) | csrB ← | small regulatory RNA CsrB |
| RA | 2,943,252 | T→C | intergenic (‑107/‑85) | ygdI ← / → csdA | DUF903 domain‑containing lipoprotein YgdI/cysteine sulfinate desulfinase |
| RA | 2,944,020 | T→C | G228G (GGT→GGC) | csdA → | cysteine sulfinate desulfinase |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,954,152 | T→C | T618A (ACG→GCG) | recB ← | exodeoxyribonuclease V subunit RecB |
| RA | 2,958,339 | T→C | A182A (GCA→GCG) | ptrA ← | protease 3 |
| RA | 2,963,665 | C→T | A18T (GCG→ACG) | ppdB ← | conserved protein PpdB |
| RA | 2,982,381 | Δ1 bp | intergenic (‑199/+116) | araE ← / ← kduD | arabinose:H(+) symporter/putative 2‑keto‑3‑deoxy‑D‑gluconate dehydrogenase |
| RA | 2,998,712 | (C)5→4 | coding (117/795 nt) | ygeQ ← | protein YgeQ |
| RA | 3,004,064 | T→C | I575V (ATC→GTC) | ygeV ← | putative sigma(54)‑dependent transcriptional regulator YgeV |
| RA | 3,026,626 | T→C | R287R (CGT→CGC) | guaD → | guanine deaminase |
| RA | 3,028,327 | T→C | F403L (TTC→CTC) | ghxQ → | guanine/hypoxanthine transporter GhxQ |
| RA | 3,033,402 | T→C | V113A (GTG→GCG) | idi → | isopentenyl‑diphosphate Delta‑isomerase |
| RA | 3,044,431 | T→C | V257A (GTG→GCG) | bglA → | 6‑phospho‑beta‑glucosidase A |
| RA | 3,047,030 | A→G | V671A (GTG→GCG) | gcvP ← | glycine decarboxylase |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,076,876 | T→C | Y194C (TAC→TGC) | yggP ← | putative zinc‑binding dehydrogenase YggP |
| RA | 3,084,761 | T→C | Y384C (TAC→TGC) | speA ← | arginine decarboxylase, biosynthetic |
| RA | 3,108,115 | T→C | K347K (AAA→AAG) | speC ← | ornithine decarboxylase, biosynthetic |
| RA | 3,111,500 | Δ1 bp | pseudogene (489/861 nt) | yghE ← | putative type II secretion system L‑type protein |
| RA | 3,116,901 | C→A | A738S (GCG→TCG) | yghJ ← | putative lipoprotein YghJ |
| RA | 3,133,301 | +G | coding (657/714 nt) | yghS ← | putative ATP‑binding protein YghS |
| RA | 3,177,509 | (C)6→7 | coding (402/630 nt) | nudF ← | ADP‑sugar pyrophosphatase |
| RA | 3,180,525 | T→C | D35D (GAT→GAC) | ygiC → | putative enzyme with ATPase activity |
| RA | 3,196,428 | A→G | V109A (GTA→GCA) | rfaE ← | fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase |
| RA | 3,212,597 | T→C | G497G (GGT→GGC) | dnaG → | DNA primase |
| RA | 3,216,313 | T→C | Q60R (CAA→CGA) | nfeF ← | NADPH‑dependent ferric chelate reductase |
| RA | 3,226,934 | T→C | I234T (ATC→ACC) | ygjI → | putative transporter YgjI |
| RA | 3,236,318 | T→C | V120A (GTG→GCG) | ygjP → | putative metal‑dependent hydrolase |
| RA | 3,272,344 | Δ1 bp | coding (408/885 nt) | garR ← | tartronate semialdehyde reductase |
| RA | 3,278,656 | T→C | T4A (ACC→GCC) | agaR ← | DNA‑binding transcriptional repressor AgaR |
| RA | 3,304,937 | A→G | V294A (GTA→GCA) | mtr ← | tryptophan:H(+) symporter Mtr |
| RA | 3,328,842 | T→C | intergenic (‑127/‑121) | greA ← / → dacB | transcription elongation factor GreA/peptidoglycan DD‑endopeptidase DacB |
| RA | 3,344,042 | T→C | G33G (GGT→GGC) | lptB → | lipopolysaccharide transport system ATP binding protein |
| RA | 3,353,609 | T→C | T148A (ACC→GCC) | yhcC ← | radical SAM family oxidoreductase YhcC |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,379,266 | (C)7→8 | coding (732/1128 nt) | zapE ← | cell division factor ZapE with ATPase activity |
| RA | 3,381,378 | T→C | G212G (GGT→GGC) | degQ → | periplasmic serine endoprotease |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,406,735 | T→C | G273G (GGT→GGC) | accC → | biotin carboxylase |
| RA | 3,414,734 | T→C | F291L (TTT→CTT) | acrE → | multidrug efflux pump membrane fusion lipoprotein AcrE |
| RA | 3,422,481 | G→A | E16K (GAA→AAA) | yhdZ → | putative ABC transporter ATP‑binding subunit YhdZ |
| RA | 3,433,146 | T→C | T139A (ACA→GCA) | smf ← | protein Smf |
| RA | 3,438,922 | A→T | I70N (ATC→AAC) | zntR ← | DNA‑binding transcriptional activator ZntR |
| RA | 3,459,986 | G→A | S57N (AGC→AAC) | gspF → | Type II secretion system protein GspF |
| RA | 3,475,341 | T→C | V126V (GTA→GTG) | tusD ← | sulfurtransferase complex subunit TusD |
| RA | 3,494,514 | T→C | G168G (GGT→GGC) | nirB → | nitrite reductase catalytic subunit NirB |
| RA | 3,494,795 | (G)5→6 | coding (785/2544 nt) | nirB → | nitrite reductase catalytic subunit NirB |
| RA | 3,499,158 | T→C | V444A (GTT→GCT) | cysG → | siroheme synthase |
| RA | 3,505,168 | A→G | F285L (TTT→CTT) | yhfS ← | putative aminotransferase YhfS |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,599,441 | T→C | D73G (GAC→GGC) | livJ ← | branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein |
| RA | 3,632,997 | (T)5→6 | pseudogene (1462/1607 nt) | yhiL ← | putative uncharacterized protein YhiL |
| RA | 3,693,321 | T→C | Y639C (TAC→TGC) | bcsA ← | cellulose synthase catalytic subunit |
| RA | 3,712,670 | T→C | S89G (AGC→GGC) | yhjY ← | conserved protein YhjY |
| RA | 3,714,397 | C→T | E666E (GAG→GAA) | bisC ← | biotin sulfoxide reductase |
| RA | 3,717,565 | A→G | T86A (ACC→GCC) | ghrB → | glyoxylate reductase |
| RA | 3,723,631 | T→C | E256G (GAG→GGG) | glyS ← | glycine‑‑tRNA ligase subunit beta |
| RA | 3,728,118 | (C)8→9 | coding (1254/1455 nt) | xylB ← | xylulokinase |
| RA | 3,762,200 | A→G | A6A (GCA→GCG) | rhsA → | rhs element protein RhsA |
| RA | 3,762,212 | C→T | G10G (GGC→GGT) | rhsA → | rhs element protein RhsA |
| RA | 3,766,021 | G→A | W1280* (TGG→TAG) | rhsA → | rhs element protein RhsA |
| RA | 3,781,031 | (C)5→4 | intergenic (+14/‑184) | lldD → / → trmL | L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase |
| RA | 3,790,817 | T→C | I177V (ATT→GTT) | tdh ← | threonine dehydrogenase |
| RA | 3,810,369 | A→G | F262L (TTT→CTT) | mutM ← | DNA‑formamidopyrimidine glycosylase |
| RA | 3,811,671 | A→G | S2P (TCC→CCC) | rpmB ← | 50S ribosomal subunit protein L28 |
| RA | 3,815,808 | (A)8→7 | intergenic (‑40/+55) | pyrE ← / ← rph | orotate phosphoribosyltransferase/truncated RNase PH |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,835,367 | A→G | V188A (GTC→GCC) | yicJ ← | putative xyloside transporter YicJ |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,880,025 | T→C | D32G (GAC→GGC) | gyrB ← | DNA gyrase subunit B |
| RA | 3,880,855 | T→C | T123A (ACT→GCT) | recF ← | DNA repair protein RecF |
| RA | 3,905,639 | (A)9→8 | intergenic (‑42/+92) | bglF ← / ← bglG | beta‑glucoside specific PTS enzyme II/BglG kinase/BglG phosphatase/transcriptional antiterminator BglG |
| RA | 3,907,703 | T→C | T222A (ACG→GCG) | pstB ← | phosphate ABC transporter ATP binding subunit |
| RA | 3,910,466 | T→C | intergenic (‑68/+19) | pstC ← / ← pstS | phosphate ABC transporter membrane subunit PstC/phosphate ABC transporter periplasmic binding protein |
| RA | 3,931,183 | (G)7→8 | intergenic (‑90/‑133) | ravA ← / → kup | regulatory ATPase RavA/K(+):H(+) symporter Kup |
| RA | 3,959,045 | T→C | V359A (GTA→GCA) | ilvC → | ketol‑acid reductoisomerase (NADP(+)) |
| RA | 3,970,974 | A→G | N281S (AAC→AGC) | wecB → | UDP‑N‑acetylglucosamine 2‑epimerase |
| RA | 3,982,684 | (C)8→9 | noncoding (79/87 nt) | leuT → | tRNA‑Leu |
| RA | 4,060,843 | (G)6→7 | coding (397/711 nt) | yihL → | putative transcriptional regulator YihL |
| RA | 4,063,466 | A→G | K407R (AAG→AGG) | yihN → | putative transporter YihN |
| RA | 4,070,450 | T→C | intergenic (‑49/+65) | yihR ← / ← yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| RA | 4,097,658 | T→G | intergenic (‑210/‑78) | rhaB ← / → rhaS | rhamnulokinase/DNA‑binding transcriptional activator RhaS |
| RA | 4,103,728 | A→G | G416G (GGT→GGC) | cpxA ← | sensory histidine kinase CpxA |
| RA | 4,132,627 | (T)6→7 | coding (12/891 nt) | metF → | 5,10‑methylenetetrahydrofolate reductase |
| RA | 4,144,838 | A→G | T282A (ACA→GCA) | pflD → | putative formate acetyltransferase 2 |
| RA | 4,151,639 | T→C | H487R (CAC→CGC) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,156,962 | T→C | V38A (GTG→GCG) | argH → | argininosuccinate lyase |
| RA | 4,267,564 | T→C | Y151H (TAT→CAT) | tyrB → | tyrosine aminotransferase |
| RA | 4,281,343 | A→G | E455G (GAG→GGG) | yjcE → | putative transporter YjcE |
| RA | 4,282,253 | T→C | S275G (AGC→GGC) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,320,725 | T→A | I175F (ATC→TTC) | phnH ← | carbon‑phosphorus lyase core complex subunit PhnH |
| RA | 4,359,475 | C→T | G186D (GGT→GAT) | cadB ← | lysine:cadaverine antiporter |
| RA | 4,369,492 | T→C | A307A (GCA→GCG) | yjeH ← | L‑methionine/branched chain amino acid exporter |
| RA | 4,372,554 | G→A | V510V (GTG→GTA) | groL → | chaperonin GroEL |
| RA | 4,381,225 | T→A | D365V (GAT→GTT) | frdA ← | fumarate reductase flavoprotein subunit |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,511,516 | A→G | V300A (GTG→GCG) | fecD ← | ferric citrate ABC transporter membrane subunit FecD |
| RA | 4,541,175 | (A)7→6 | coding (219/603 nt) | fimB → | regulator for fimA |
| RA | 4,563,534 | A→G | C24R (TGT→CGT) | yjiK ← | uncharacterized protein YjiK |
| RA | 4,586,296 | G→A | Q156* (CAG→TAG) | hsdR ← | type I restriction enzyme EcoKI endonuclease component |
| RA | 4,591,444 | C→T | intergenic (‑165/‑213) | btsT ← / → tsr | pyruvate:H(+) symporter/methyl‑accepting chemotaxis protein Tsr |
| RA | 4,593,136 | T→C | S494P (TCT→CCT) | tsr → | methyl‑accepting chemotaxis protein Tsr |
| RA | 4,606,215 | (G)8→9 | noncoding (72/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,606,632 | G→A | intergenic (‑231/+37) | leuQ ← / ← rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase |
| RA | 4,609,336 | (C)7→8 | intergenic (+13/‑78) | yjjG → / → prfC | pyrimidine nucleotidase/peptide chain release factor RF3 |
| RA | 4,632,628 | A→G | K632K (AAA→AAG) | slt → | soluble lytic murein transglycosylase |
| RA | 4,633,810 | A→G | Y5C (TAC→TGC) | ytjC → | putative phosphatase |
| RA | 4,634,286 | T→C | L164L (TTA→CTA) | ytjC → | putative phosphatase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 433032 | 433094 | 63 | 4 [2] | [2] 3 | nrdR | NrdR transcriptional repressor |
| * | * | ÷ | NC_000913 | 732112–732285 | 732344 | 60–233 | 3 [2] | [2] 4 | rhsC | rhs element protein RhsC |
| * | * | ÷ | NC_000913 | 1430004 | 1430094 | 91 | 3 [2] | [1] 3 | stfR | Rac prophage; putative membrane protein |
| * | * | ÷ | NC_000913 | 2521087–2521121 | 2521185–2521183 | 63–99 | 3 [2] | [2] 4 | [valX]–[valY] | [valX],[valY] |
| * | * | ÷ | NC_000913 | 3423784–3424230 | 3424522–3424240 | 11–739 | 3 [2] | [1] 4 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 3762280–3764065 | 3765177–3764077 | 13–2898 | 3 [2] | [2] 3 | rhsA | rhs element protein RhsA |
| * | * | ÷ | NC_000913 | 3942162–3943392 | 3946636–3946229 | 2838–4475 | 4 [1] | [2] 3 | [rrsC]–rrlC | [rrsC],gltU,rrlC |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 33 (1.140) | 6 (0.240) | 6/232 | 1.7 | 20.0% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 19 (0.750) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 3363001 = | 83 (2.860) | 47 (1.630) | 37/262 | 0.0 | 53.3% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 0 (0.000) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 33 (1.140) | 27/264 | 0.1 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 0 (0.000) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||