breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
RA | 2,706 | G→T | 22.7% | L790F (TTG→TTT) | thrA → | Bifunctional aspartokinase/homoserine dehydrogenase 1 |
RA | 5,144 | G→A | 68.9% | intergenic (+124/‑90) | thrC → / → yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
RA | 7,905 | A→C | 19.9% | Y19D (TAC→GAC) | yaaJ ← | putative transporter |
RA | 10,444 | G→T | 68.2% | F17L (TTC→TTA) | satP ← | succinate‑acetate transporter |
RA | 21,046 | G→T | 17.2% | A11A (GCC→GCA) | rpsT ← | 30S ribosomal subunit protein S20 |
RA | 25,546 | G→T | 52.2% | D114Y (GAC→TAC) | lspA → | prolipoprotein signal peptidase (signal peptidase II) |
RA | 29,139 | G→T | 53.9% | G256C (GGT→TGT) | dapB → | dihydrodipicolinate reductase |
RA | 37,692 | G→T | 9.6% | Q45K (CAG→AAG) | caiC ← | putative crotonobetaine/carnitine‑CoA ligase |
RA | 44,123 | G→T | 6.1% | A312A (GCG→GCT) | fixB → | putative electron transfer flavoprotein, NAD/FAD‑binding domain and ETFP adenine nucleotide‑binding domain‑like protein |
RA | 48,260 | G→T | 18.7% | A164A (GCG→GCT) | kefC → | potassium:proton antiporter |
RA | 49,840 | G→T | 65.4% | A6A (GCG→GCT) | folA → | dihydrofolate reductase |
RA | 54,203 | T→G | 23.3% | Q167P (CAA→CCA) | surA ← | peptidyl‑prolyl cis‑trans isomerase (PPIase) |
RA | 55,590 | G→T | 58.9% | T507K (ACG→AAG) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 56,677 | G→T | 64.9% | R145S (CGC→AGC) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 67,293 | C→A | 20.6% | A140A (GCC→GCA) | araC → | ara regulon transcriptional activator; autorepressor |
RA | 80,123 | C→T | 48.9% | G25S (GGC→AGC) | leuL ← | leu operon leader peptide |
RA | 81,562 | C→A | 66.7% | I236I (ATC→ATA) | leuO → | global transcription factor |
RA | 85,890 | G→T | 33.9% | intergenic (+371/‑231) | cra → / → mraZ | transcriptional repressor‑activator for carbon metabolism/RsmH methytransferase inhibitor |
RA | 97,521 | C→A | 61.8% | A90A (GCC→GCA) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
RA | 100,166 | C→A | 17.7% | R175R (CGC→CGA) | ftsQ → | divisome assembly protein, membrane anchored protein involved in growth of wall at septum |
RA | 103,467 | G→T | 65.5% | D142Y (GAT→TAT) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
RA | 104,561 | G→T | 63.0% | A124S (GCG→TCG) | secM → | regulator of secA translation |
RA | 112,609 | T→A | 22.1% | V326V (GTA→GTT) | hofB ← | T2SE secretion family protein; P‑loop ATPase superfamily protein |
RA | 118,828 | G→T | 23.6% | D84Y (GAT→TAT) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
RA | 118,873 | G→T | 66.1% | D99Y (GAC→TAC) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
RA | 121,438 | C→T | 25.9% | H645H (CAC→CAT) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
RA | 127,851 | G→A | 21.2% | intergenic (‑104/‑251) | yacH ← / → acnB | uncharacterized protein/bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
RA | 140,496 | A→T | 14.3% | H103L (CAC→CTC) | yadH → | inner membrane putative ABC superfamily transporter permease |
RA | 142,460 | T→A | 65.1% | F298Y (TTC→TAC) | yadE → | putative polysaccharide deacetylase lipoprotein |
RA | 148,074 | G→T | 18.7% | Q5K (CAA→AAA) | yadK ← | putative fimbrial‑like adhesin protein |
RA | 149,044 | A→T | 23.3% | C86S (TGC→AGC) | yadM ← | putative fimbrial‑like adhesin protein |
RA | 153,472 | G→T | 65.4% | intergenic (‑102/+268) | yadN ← / ← folK | putative fimbrial‑like adhesin protein/2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
RA | 154,689 | C→A | 18.5% | D309Y (GAT→TAT) | pcnB ← | poly(A) polymerase |
RA | 158,287 | C→A | 69.5% | D78Y (GAC→TAC) | ligT ← | 2'‑5' RNA ligase |
RA | 158,967 | C→A | 26.5% | H126N (CAT→AAT) | hrpB → | putative ATP‑dependent helicase |
RA | 166,356 | C→A | 31.3% | S31* (TCG→TAG) | fhuC → | iron‑hydroxamate transporter subunit |
RA | 168,383 | G→T | 18.7% | T145T (ACG→ACT) | fhuB → | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components |
RA | 169,092 | T→G | 8.0% | L382V (TTG→GTG) | fhuB → | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components |
RA | 169,937 | C→A | 26.0% | intergenic (+6/+152) | fhuB → / ← hemL | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
RA | 169,940 | T→A | 11.2% | intergenic (+9/+149) | fhuB → / ← hemL | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
RA | 169,942 | T→A | 9.7% | intergenic (+11/+147) | fhuB → / ← hemL | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
RA | 186,279 | A→T | 39.2% | noncoding (81/136 nt) | tff → | novel sRNA, function unknown |
RA | 187,241 | A→T | 21.9% | intergenic (+155/‑103) | rpsB → / → tsf | 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts |
RA | 188,863 | T→A | 22.4% | D174E (GAT→GAA) | pyrH → | uridylate kinase |
RA | 202,989 | C→T | 21.9% | I459I (ATC→ATT) | dnaE → | DNA polymerase III alpha subunit |
RA | 230,250 | C→A | 35.2% | D65Y (GAC→TAC) | mltD ← | putative membrane‑bound lytic murein transglycosylase D |
RA | 232,860 | G→T | 67.0% | D103Y (GAT→TAT) | dnaQ → | DNA polymerase III epsilon subunit |
RA | 233,053 | A→C | 24.0% | D167A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
RA | 233,931 | G→A | 35.0% | S37N (AGT→AAT) | yafT → | lipoprotein |
RA | 234,984 | G→T | 18.5% | I80I (ATC→ATA) ‡ | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 234,985 | A→T | 12.9% | I80N (ATC→AAC) ‡ | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 234,994 | G→T | 27.5% | S77* (TCA→TAA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,010 | G→T | 22.4% | L72I (CTT→ATT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,019 | C→A | 24.7% | V69L (GTA→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,022 | G→T | 24.7% | H68N (CAT→AAT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,036 | G→T | 12.9% | S63Y (TCC→TAC) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 238,195 | G→T | 64.6% | V532V (GTC→GTA) | fadE ← | acyl coenzyme A dehydrogenase |
RA | 248,215 | A→C | 18.8% | V277V (GTA→GTC) | dinB → | DNA polymerase IV |
RA | 249,964 | A→T | 20.9% | intergenic (+316/‑2) | yafP → / → ykfJ | putative acyl‑CoA transferase/pseudogene |
RA | 267,806 | G→T | 15.9% | pseudogene (332/426 nt) | insN → | pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
RA | 268,570 | G→T | 22.1% | pseudogene (13/1108 nt) | ykfC → | CP4‑6 prophage; conserved protein;Phage or Prophage Related |
RA | 274,735 | A→T | 56.7% | pseudogene (138/348 nt) | afuB ← | pseudogene, CP4‑6 prophage; ABC transporter permease family;Phage or Prophage Related |
RA | 278,630 | G→T | 20.1% | A214A (GCG→GCT) | yagE → | 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
RA | 280,145 | G→A | 21.5% | E412K (GAG→AAG) | yagF → | CP4‑6 prophage; dehydratase family protein |
RA | 283,602 | A→T | 7.8% | Y368F (TAT→TTT) | yagH → | CP4‑6 prophage; putative xylosidase/arabinosidase |
RA | 283,636 | A→C | 13.3% | Q379H (CAA→CAC) | yagH → | CP4‑6 prophage; putative xylosidase/arabinosidase |
RA | 301,675 | G→T | 20.0% | S285* (TCG→TAG) | ecpD ← | polymerized tip adhesin of ECP fibers |
RA | 306,510 | G→A | 22.7% | R180W (CGG→TGG) | ecpR ← | putative transcriptional regulator for the ecp operon |
RA | 308,879 | G→A | 13.6% | Y25Y (TAC→TAT) | ykgR ← | uncharacterized protein |
RA | 312,532 | G→A | 74.7% | pseudogene (349/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
RA | 320,920 | G→A | 67.0% | S52S (AGC→AGT) | ykgH ← | putative inner membrane protein |
RA | 321,223 | C→A | 59.9% | intergenic (‑148/+65) | ykgH ← / ← betA | putative inner membrane protein/choline dehydrogenase, a flavoprotein |
RA | 333,621 | G→T | 21.3% | R378L (CGC→CTC) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
RA | 341,704 | T→A | 16.8% | T115T (ACA→ACT) | yahN ← | amino acid exporter for proline, lysine, glutamate, homoserine |
RA | 344,800 | G→T | 48.5% | E136D (GAG→GAT) | prpB → | 2‑methylisocitrate lyase |
RA | 345,428 | T→C | 6.4% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
RA | 347,382 | G→T | 39.3% | E153* (GAA→TAA) | prpD → | 2‑methylcitrate dehydratase |
RA | 347,718 | G→T | 17.3% | E265* (GAA→TAA) | prpD → | 2‑methylcitrate dehydratase |
RA | 351,447 | T→A | 21.2% | L272Q (CTG→CAG) | codB → | cytosine transporter |
RA | 353,486 | A→T | 5.3% | intergenic (+321/+16) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
RA | 360,114 | A→T | 6.4% | intergenic (‑48/+547) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
RA | 360,157 | T→G | 8.1% | intergenic (‑91/+504) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
RA | 360,165 | G→C | 5.7% | intergenic (‑99/+496) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
RA | 360,173 | C→A | 5.4% | intergenic (‑107/+488) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
RA | 360,752 | A→G | 100% | V331A (GTG→GCG) | lacI ← | DNA‑binding transcriptional repressor |
JC | 361,139 | +GCCA | 9.2% | coding (605/1083 nt) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,806 | G→A | 100% | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor/mhp operon transcriptional activator |
RA | 362,159 | G→T | 63.1% | I165I (ATC→ATA) | mhpR ← | mhp operon transcriptional activator |
RA | 369,273 | G→T | 25.5% | A299A (GCG→GCT) | mhpF → | acetaldehyde‑CoA dehydrogenase II, NAD‑binding |
RA | 382,882 | G→A | 19.2% | A152A (GCG→GCA) | tauC → | taurine transporter subunit |
RA | 395,611 | C→A | 21.6% | D257Y (GAC→TAC) | ddlA ← | D‑alanine‑D‑alanine ligase A |
RA | 396,883 | A→G | 59.2% | Q14Q (CAA→CAG) | iraP → | anti‑RssB factor, RpoS stabilzer during Pi starvation; anti‑adapter protein |
RA | 399,156 | T→A | 19.7% | intergenic (+99/‑3) | psiF → / → yaiC | PsiF family protein/diguanylate cyclase, cellulose regualtor |
RA | 400,260 | G→T | 27.4% | E368* (GAA→TAA) | yaiC → | diguanylate cyclase, cellulose regualtor |
RA | 401,692 | T→C | 22.4% | intergenic (+14/‑169) | yaiI → / → aroL | UPF0178 family protein/shikimate kinase II |
RA | 402,340 | G→T | 66.4% | V160V (GTG→GTT) | aroL → | shikimate kinase II |
RA | 406,075 | C→A | 69.4% | P159Q (CCG→CAG) | mak → | manno(fructo)kinase |
RA | 408,940 | G→T | 22.1% | A757E (GCG→GAG) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
RA | 411,027 | G→T | 67.4% | L61L (CTC→CTA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
RA | 414,730 | A→T | 17.9% | intergenic (+90/‑317) | phoR → / → brnQ | sensory histidine kinase in two‑component regulatory system with PhoB/branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val |
RA | 421,799 | C→A | 56.8% | I69I (ATC→ATA) | tgt → | tRNA‑guanine transglycosylase |
RA | 433,551 | G→T | 67.5% | S14Y (TCC→TAC) | yajO ← | 2‑carboxybenzaldehyde reductase |
RA | 434,663 | A→C | 65.9% | I324S (ATC→AGC) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 435,336 | G→T | 60.4% | Q100K (CAG→AAG) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 437,672 | T→A | 66.1% | V223E (GTG→GAG) | thiI → | tRNA s(4)U8 sulfurtransferase |
RA | 438,099 | G→T | 24.4% | E365D (GAG→GAT) | thiI → | tRNA s(4)U8 sulfurtransferase |
RA | 444,489 | G→A | 67.5% | R537C (CGT→TGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
RA | 451,853 | C→A | 33.7% | T422N (ACC→AAC) | tig → | peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 456,298 | T→A | 67.2% | L652Q (CTG→CAG) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 456,588 | G→T | 63.5% | D749Y (GAC→TAC) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 467,332 | G→A | 20.7% | R414H (CGC→CAC) | mdlB → | putative multidrug transporter subunit of ABC superfamily, ATP‑binding component |
RA | 474,138 | G→T | 72.6% | intergenic (‑65/+99) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
RA | 475,805 | C→A | 69.1% | A120A (GCG→GCT) | tomB ← | Hha toxicity attenuator; conjugation‑related protein |
RA | 479,244 | C→A | 65.0% | A206S (GCC→TCC) | acrB ← | multidrug efflux system protein |
RA | 480,820 | C→T | 64.4% | D86N (GAC→AAC) | acrA ← | multidrug efflux system |
RA | 481,667 | G→A | 58.9% | A151T (GCG→ACG) | acrR → | transcriptional repressor |
RA | 515,501 | G→T | 22.4% | A105S (GCG→TCG) | ybbA → | putative ABC superfamily transporter ATP‑binding subunit |
RA | 521,002 | G→T | 23.4% | E762D (GAG→GAT) | rhsD → | Rhs family putative polymorphic toxin |
RA | 529,771 | C→T | 25.0% | R134C (CGT→TGT) | gcl → | glyoxylate carboligase |
RA | 530,466 | C→A | 68.8% | F365L (TTC→TTA) | gcl → | glyoxylate carboligase |
RA | 542,200 | Δ1 bp | 72.1% | coding (65/1668 nt) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
RA | 545,522 | C→A | 27.4% | A147E (GCG→GAG) | ylbF → | putative anaerobic allantoin catabolic oxamate carbamoyltransferase; DUF2877 family protein |
RA | 546,491 | G→T | 64.2% | V199V (GTG→GTT) | ybcF → | putative carbonate kinase |
RA | 549,397 | G→T | 64.3% | intergenic (‑1/+2) | lpxH ← / ← ppiB | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase/peptidyl‑prolyl cis‑trans isomerase B (rotamase B) |
RA | 555,235 | T→C | 24.5% | L28S (TTA→TCA) | sfmD → | putative outer membrane export usher protein |
RA | 560,727 | C→A | 21.2% | V236V (GTG→GTT) | intD ← | DLP12 prophage; putative phage integrase |
RA | 565,475 | C→T | 25.5% | A373V (GCT→GTT) | ybcK → | DLP12 prophage; putative recombinase |
RA | 576,183 | G→T | 9.8% | intergenic (‑282/‑107) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
RA | 576,998 | G→T | 63.4% | pseudogene (189/309 nt) | aaaD → | pseudogene; DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
RA | 579,565 | A→G | 23.6% | G143G (GGA→GGG) | appY → | global transcriptional activator; DLP12 prophage |
RA | 581,203 | A→T | 65.4% | intergenic (‑114/‑310) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)/tRNA‑OTHER |
RA | 583,341 | T→G | 73.7% | S33R (AGT→CGT) | ybcH ← | PRK09936 family protein |
RA | 595,957 | T→G | 19.4% | I596M (ATT→ATG) | cusA → | copper/silver efflux system, membrane component |
RA | 597,428 | C→A | 15.7% | S5* (TCA→TAA) | pheP → | phenylalanine transporter |
RA | 604,824 | C→T | 23.8% | intergenic (+191/+91) | insL1 → / ← entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
RA | 607,931 | G→A | 68.9% | S7F (TCC→TTC) | fepA ← | iron‑enterobactin outer membrane transporter |
RA | 625,364 | G→T | 67.5% | G5G (GGG→GGT) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 631,333 | G→A | 21.6% | N231N (AAC→AAT) | ybdN ← | PAPS reductase‑like domain protein |
RA | 636,974 | G→T | 17.0% | S117* (TCG→TAG) | uspG ← | universal stress protein UP12 |
RA | 637,005 | C→A | 20.5% | D107Y (GAT→TAT) | uspG ← | universal stress protein UP12 |
RA | 639,231 | G→A | 70.9% | L65F (CTT→TTT) | rnk ← | regulator of nucleoside diphosphate kinase |
RA | 645,258 | G→A | 18.6% | S230L (TCG→TTG) | citE ← | citrate lyase, citryl‑ACP lyase (beta) subunit |
RA | 647,422 | G→T | 75.5% | intergenic (‑110/‑269) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 647,509 | T→C | 70.6% | intergenic (‑197/‑182) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 648,056 | C→A | 63.6% | F122L (TTC→TTA) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
RA | 652,680 | Δ1 bp | 18.2% | intergenic (+107/‑68) | pagP → / → cspE | phospholipid:lipid A palmitoyltransferase/constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 652,865 | Δ1 bp | 72.1% | coding (118/210 nt) | cspE → | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 657,177 | C→T | 20.9% | A186A (GCG→GCA) | lipB ← | octanoyltransferase; octanoyl‑[ACP]:protein N‑octanoyltransferase |
RA | 662,108 | A→T | 64.5% | V522V (GTT→GTA) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 662,631 | C→A | 69.9% | R348L (CGC→CTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 691,170 | A→T | 16.9% | Q205L (CAG→CTG) | ubiF → | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase |
RA | 693,425 | C→A | 7.5% | P403P (CCG→CCT) | asnB ← | asparagine synthetase B |
RA | 705,588 | C→A | 64.1% | intergenic (+16/+68) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
RA | 715,664 | A→T | 20.2% | C85S (TGC→AGC) | speF ← | ornithine decarboxylase isozyme, inducible |
RA | 717,582 | A→T | 19.1% | S763S (TCT→TCA) | kdpD ← | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
RA | 724,813 | A→T | 63.8% | intergenic (+17/‑226) | ybfA → / → rhsC | DUF2517 family protein/Rhs family putative polymorphic toxin |
RA | 731,316 | A→T | 29.2% | T71S (ACA→TCA) | ybfC → | putative periplasmic protein |
RA | 733,047 | G→A | 22.9% | pseudogene (767/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
RA | 734,414 | C→A | 22.9% | intergenic (+105/‑43) | ybfD → / → ybgA | H repeat‑associated putative transposase/DUF1722 family protein |
RA | 742,332 | G→T | 21.0% | G298G (GGC→GGA) | abrB ← | regulator of aidB expression; inner membrane protein |
RA | 746,784 | G→T | 7.1% | T281K (ACG→AAG) | ybgQ ← | putative outer membrane protein |
RA | 754,572 | G→T | 69.5% | E137D (GAG→GAT) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
RA | 759,000 | C→A | 69.0% | F177L (TTC→TTA) | sucC → | succinyl‑CoA synthetase, beta subunit |
RA | 766,563 | G→A | 26.0% | intergenic (+496/‑351) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
RA | 772,664 | A→C | 11.5% | K289N (AAA→AAC) | tolA → | membrane anchored protein in TolA‑TolQ‑TolR complex |
RA | 776,389 | G→C | 6.4% | intergenic (+15/‑135) | lysW → / → valZ | tRNA‑Lys/tRNA‑Val |
RA | 776,394 | A→T | 8.2% | intergenic (+20/‑130) | lysW → / → valZ | tRNA‑Lys/tRNA‑Val |
RA | 788,902 | G→T | 63.0% | R115S (CGT→AGT) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
RA | 800,488 | G→T | 59.0% | V510V (GTG→GTT) | ybhJ → | putative hydratase |
RA | 800,779 | G→T | 73.5% | E607D (GAG→GAT) | ybhJ → | putative hydratase |
RA | 828,374 | G→T | 61.7% | V11V (GTC→GTA) | ybiA ← | DUF1768 family protein |
RA | 832,445 | G→T | 59.5% | P213P (CCG→CCT) | ybiC → | putative dehydrogenase |
RA | 833,118 | G→T | 22.2% | intergenic (+226/+3) | ybiC → / ← ybiJ | putative dehydrogenase/DUF1471 family putative periplasmic protein |
RA | 837,090 | G→A | 13.7% | intergenic (‑103/+162) | fiu ← / ← mcbA | catecholate siderophore receptor Fiu/colanic acid mucoidy stimulation protein |
RA | 843,299 | C→A | 57.7% | W54C (TGG→TGT) | glnH ← | glutamine transporter subunit |
RA | 853,320 | A→T | 7.5% | W400R (TGG→AGG) | ybiU ← | DUF1479 family protein |
RA | 853,968 | A→T | 8.3% | Y184N (TAC→AAC) | ybiU ← | DUF1479 family protein |
RA | 873,699 | G→T | 13.4% | intergenic (‑208/‑5) | rimO ← / → bssR | ribosomal protein S12 methylthiotransferase; radical SAM superfamily/repressor of biofilm formation by indole transport regulation |
RA | 876,447 | G→A | 61.0% | D89N (GAT→AAT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 879,085 | G→T | 71.3% | intergenic (‑241/‑44) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein |
RA | 915,267 | G→A | 21.1% | E193K (GAA→AAA) | macA → | macrolide transporter subunit, membrane fusion protein (MFP) component |
RA | 918,501 | G→A | 18.8% | D45N (GAC→AAC) | clpS → | regulatory protein for ClpA substrate specificity |
RA | 925,160 | G→T | 51.4% | S420* (TCA→TAA) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 932,915 | C→A | 28.3% | R30S (CGC→AGC) | lolA → | lipoprotein chaperone |
RA | 939,763 | C→A | 26.0% | S92* (TCG→TAG) | dmsC → | dimethyl sulfoxide reductase, anaerobic, subunit C |
RA | 943,573 | G→T | 51.6% | A297S (GCC→TCC) | ycaM → | putative transporter |
RA | 947,895 | C→A | 22.9% | M372I (ATG→ATT) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
RA | 948,015 | C→A | 24.4% | P332P (CCG→CCT) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
RA | 955,662 | G→A | 30.9% | intergenic (+111/‑58) | aroA → / → ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
RA | 958,121 | C→A | 8.8% | A224D (GCC→GAC) | rpsA → | 30S ribosomal subunit protein S1 |
RA | 961,946 | T→A | 26.5% | F724Y (TTT→TAT) | ycaI → | ComEC family inner membrane protein |
RA | 965,130 | G→T | 26.0% | D96Y (GAC→TAC) | ycaQ → | DUF1006 family protein with C‑terminal wHTH domain |
RA | 968,415 | G→T | 60.6% | S148* (TCG→TAG) | ycbC ← | DUF218 superfamily protein |
RA | 971,532 | A→T | 21.9% | Q152L (CAG→CTG) | mukE → | chromosome condensin MukBEF, MukE localization factor |
RA | 983,370 | T→A | 26.0% | N358Y (AAC→TAC) | asnS ← | asparaginyl tRNA synthetase |
RA | 984,870 | T→A | 8.2% | N315Y (AAT→TAT) | pncB ← | nicotinate phosphoribosyltransferase |
RA | 1,035,405 | G→T | 25.2% | A218A (GCG→GCT) | cbdB → | cytochrome bd‑II oxidase, subunit II |
RA | 1,039,635 | C→T | 14.2% | G11D (GGC→GAC) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
RA | 1,048,928 | C→A | 64.2% | E903* (GAA→TAA) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,049,407 | G→T | 57.0% | T743K (ACG→AAG) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,060,633 | A→G | 31.2% | N381S (AAC→AGC) | yccE → | uncharacterized protein |
RA | 1,061,397 | G→T | 26.9% | A119A (GCG→GCT) | agp → | glucose‑1‑phosphatase/inositol phosphatase |
RA | 1,071,320 | T→C | 20.3% | I1007V (ATC→GTC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
RA | 1,077,911 | A→C | 71.8% | K71N (AAA→AAC) | efeO → | inactive ferrous ion transporter EfeUOB |
RA | 1,084,103 | A→T | 53.7% | L404* (TTA→TAA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,087,742 | A→T | 21.5% | Y2N (TAT→AAT) | pgaA ← | biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein |
RA | 1,102,255 | G→T | 25.3% | G149C (GGT→TGT) | clsC → | stationary phase cardiolipin synthase 3 |
RA | 1,105,157 | G→T | 24.1% | D123Y (GAT→TAT) | opgG → | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein |
RA | 1,116,964 | A→G | 61.4% | intergenic (‑21/+53) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydro‑orotase |
RA | 1,118,506 | A→T | 10.1% | L75Q (CTA→CAA) | yceB ← | lipoprotein, DUF1439 family |
RA | 1,123,001 | A→C | 22.4% | Q247P (CAG→CCG) | yceM → | putative oxidoreductase |
RA | 1,151,711 | C→A | 22.3% | A165E (GCG→GAG) | holB → | DNA polymerase III, delta prime subunit |
RA | 1,151,750 | G→T | 64.6% | R178L (CGC→CTC) | holB → | DNA polymerase III, delta prime subunit |
RA | 1,152,062 | C→A | 19.0% | S282Y (TCT→TAT) | holB → | DNA polymerase III, delta prime subunit |
RA | 1,152,278 | G→T | 68.3% | E16* (GAA→TAA) | ycfH → | putative DNase |
RA | 1,186,393 | G→A | 23.3% | I350I (ATC→ATT) | purB ← | adenylosuccinate lyase |
RA | 1,192,525 | C→T | 19.8% | S155N (AGC→AAC) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
RA | 1,193,873 | G→T | 65.6% | intergenic (‑180/‑278) | ymfE ← / → lit | e14 prophage; putative inner membrane protein/e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
RA | 1,193,912 | G→A | 34.5% | intergenic (‑219/‑239) | ymfE ← / → lit | e14 prophage; putative inner membrane protein/e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
RA | 1,197,734 | C→T | 14.4% | R219K (AGA→AAA) | cohE ← | e14 prophage; repressor protein phage e14 |
RA | 1,210,957 | C→A | 25.5% | intergenic (‑26/‑288) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
RA | 1,211,142 | C→T | 23.8% | intergenic (‑211/‑103) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
RA | 1,211,169 | C→A | 54.3% | intergenic (‑238/‑76) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
RA | 1,219,533 | A→G | 64.1% | intergenic (+170/+202) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
RA | 1,220,996 | G→T | 58.4% | R181R (CGG→AGG) | minC ← | cell division inhibitor |
RA | 1,221,492 | T→C | 17.9% | L15L (TTA→TTG) | minC ← | cell division inhibitor |
RA | 1,224,292 | G→A | 66.4% | D8N (GAT→AAT) | ycgN → | UPF0153 family cysteine cluster protein |
RA | 1,226,292 | T→A | 56.5% | C24S (TGT→AGT) | umuD → | DNA polymerase V, subunit D |
RA | 1,228,591 | G→T | 66.5% | intergenic (‑105/+41) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
RA | 1,232,548 | C→A | 20.1% | V50V (GTG→GTT) | ycgB ← | SpoVR family stationary phase protein |
RA | 1,246,190 | G→A | 22.9% | V35V (GTC→GTT) | dhaK ← | dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit |
RA | 1,247,740 | G→T | 7.7% | G407C (GGC→TGC) | dhaR → | dhaKLM operon transcription activator |
RA | 1,253,559 | G→T | 21.3% | I137I (ATC→ATA) | pth ← | peptidyl‑tRNA hydrolase |
RA | 1,268,592 | G→T | 22.5% | L210L (CTG→CTT) | chaC → | cation transport regulator |
RA | 1,275,339 | G→T | 14.2% | R7L (CGG→CTG) | narG → | nitrate reductase 1, alpha subunit |
RA | 1,277,786 | G→A | 64.5% | D823N (GAC→AAC) | narG → | nitrate reductase 1, alpha subunit |
RA | 1,281,933 | C→T | 25.7% | P210L (CCG→CTG) | narI → | nitrate reductase 1, gamma (cytochrome b(NR)) subunit |
RA | 1,282,421 | A→T | 13.0% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
RA | 1,283,978 | C→T | 21.8% | V35I (GTA→ATA) | purU ← | formyltetrahydrofolate hydrolase |
RA | 1,292,363 | G→A | 23.8% | I405I (ATC→ATT) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
RA | 1,310,034 | C→A | 24.1% | intergenic (‑7/+79) | yciF ← / ← yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
RA | 1,322,140 | T→A | 67.9% | T159S (ACG→TCG) | btuR ← | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
RA | 1,332,695 | G→A | 19.7% | A870T (GCG→ACG) | acnA → | aconitate hydratase 1 |
RA | 1,337,533 | G→T | 62.2% | A18E (GCA→GAA) | osmB ← | lipoprotein |
RA | 1,338,978 | G→A | 21.6% | intergenic (‑112/+36) | yciZ ← / ← gmr | uncharacterized protein/cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability |
RA | 1,345,657 | C→A | 18.8% | intergenic (‑361/+7) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
RA | 1,355,349 | T→A | 27.3% | intergenic (‑184/‑28) | puuA ← / → puuD | glutamate‑‑putrescine ligase/gamma‑glutamyl‑gamma‑aminobutyrate hydrolase |
RA | 1,365,283 | G→T | 69.6% | E271* (GAG→TAG) | ycjM → | alpha amylase catalytic domain family protein |
RA | 1,368,566 | T→G | 25.6% | F74V (TTC→GTC) | ycjP → | inner membrane putative ABC superfamily sugar transporter permease |
RA | 1,374,303 | T→C | 16.4% | R721R (CGT→CGC) | ycjT → | putative family 65 glycosyl hydrolase |
JC JC | 1,376,043 | IS5 (–) +4 bp | 89.9% | pseudogene (10‑13/126 nt) | ycjV → | pseudogene; putative ATP‑binding component of a transport system |
RA | 1,377,394 | C→T | 69.0% | A275A (GCG→GCA) | ycjW ← | LacI family putative transcriptional repressor |
RA | 1,385,964 | T→G | 15.9% | Q49H (CAA→CAC) | ycjY ← | S9 homolog non‑peptidase family protein |
RA | 1,386,008 | G→T | 68.5% | Q35K (CAG→AAG) | ycjY ← | S9 homolog non‑peptidase family protein |
RA | 1,388,406 | G→T | 63.8% | R308L (CGC→CTC) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
RA | 1,395,312 | A→T | 24.5% | L240* (TTA→TAA) | abgT ← | p‑aminobenzoyl‑glutamate transporter; membrane protein |
RA | 1,401,206 | G→T | 18.7% | Q283K (CAG→AAG) | ydaM ← | diguanylate cyclase, csgD regulator |
RA | 1,408,561 | C→A | 21.5% | E164* (GAA→TAA) | recT ← | Rac prophage; recombination and repair protein |
RA | 1,413,956 | G→T | 24.2% | intergenic (‑243/+66) | ydaG ← / ← racR | Rac prophage; uncharacterized protein/Rac prophage; putative DNA‑binding transcriptional regulator |
RA | 1,424,234 | C→A | 56.8% | S310* (TCA→TAA) | stfR → | Rac prophage; putative tail fiber protein |
JC JC | 1,428,894 | IS2 (–) +5 bp | 77.3% | intergenic (‑413/+317) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
RA | 1,434,444 | G→T | 6.3% | R200S (CGC→AGC) | pfo ← | pyruvate‑flavodoxin oxidoreductase |
RA | 1,439,234 | G→T | 36.1% | D643Y (GAT→TAT) | ydbH → | putative membrane‑anchored protein, function unknown |
RA | 1,439,518 | C→A | 48.1% | S737S (TCC→TCA) | ydbH → | putative membrane‑anchored protein, function unknown |
RA | 1,447,216 | C→A | 22.5% | V228V (GTG→GTT) | paaZ ← | fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
RA | 1,454,724 | G→T | 47.5% | G472C (GGT→TGT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
RA | 1,459,404 | C→T | 20.6% | intergenic (+86/+18) | paaY → / ← ynbG | putative hexapeptide repeat acetyltransferase/uncharacterized protein |
RA | 1,459,405 | G→A | 20.2% | intergenic (+87/+17) | paaY → / ← ynbG | putative hexapeptide repeat acetyltransferase/uncharacterized protein |
RA | 1,460,861 | G→A | 7.6% | pseudogene (1213/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,499,789 | C→A | 8.0% | A183A (GCG→GCT) | ydcO ← | BenE family inner membrane putative transporter |
RA | 1,510,179 | G→T | 26.0% | A115A (GCG→GCT) | patD → | gamma‑aminobutyraldehyde dehydrogenase |
RA | 1,519,349 | T→A | 63.4% | K297* (AAA→TAA) | ansP ← | L‑asparagine transporter |
RA | 1,548,144 | G→T | 66.4% | intergenic (‑49/+85) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
RA | 1,555,079 | C→T | 20.8% | P36P (CCG→CCA) | ddpB ← | D‑ala‑D‑ala transporter subunit |
RA | 1,556,659 | A→T | 22.3% | V27E (GTA→GAA) | ddpA ← | D‑ala‑D‑a la transporter subunit |
RA | 1,563,276 | G→T | 66.1% | H491N (CAC→AAC) | gadC ← | glutamate:gamma‑aminobutyric acid antiporter |
RA | 1,565,497 | G→A | 70.6% | S269L (TCG→TTG) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
RA | 1,575,339 | G→T | 69.1% | F481L (TTC→TTA) | ydeN ← | putative Ser‑type periplasmic non‑aryl sulfatase |
RA | 1,589,490 | C→T | 20.6% | pseudogene (2755/5323 nt) | yneO ← | pseudogene, AidA homolog |
RA | 1,592,412 | T→C | 26.4% | intergenic (‑168/+462) | yneO ← / ← lsrK | pseudogene, AidA homolog/autoinducer‑2 (AI‑2) kinase |
RA | 1,592,504 | A→T | 6.8% | intergenic (‑260/+370) | yneO ← / ← lsrK | pseudogene, AidA homolog/autoinducer‑2 (AI‑2) kinase |
RA | 1,596,093 | T→G | 16.9% | L116R (CTC→CGC) | lsrA → | autoinducer 2 import ATP‑binding protein |
RA | 1,599,970 | T→A | 22.4% | D221E (GAT→GAA) | lsrB → | autoinducer 2‑binding protein |
RA | 1,603,440 | G→A | 64.8% | intergenic (‑161/+46) | yneE ← / ← uxaB | bestrophin family putative inner membrane protein/altronate oxidoreductase, NAD‑dependent |
RA | 1,605,163 | G→A | 20.8% | intergenic (‑226/+1) | uxaB ← / ← yneF | altronate oxidoreductase, NAD‑dependent/putative membrane‑bound diguanylate cyclase |
RA | 1,607,556 | A→C | 19.0% | intergenic (‑48/+16) | glsB ← / ← sad | glutaminase 2/succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
RA | 1,612,820 | T→A | 13.5% | S116C (AGT→TGT) | marC ← | UPF0056 family inner membrane protein |
RA | 1,620,961 | T→G | 64.5% | Q226P (CAA→CCA) | dcp ← | dipeptidyl carboxypeptidase II |
RA | 1,627,174 | C→A | 26.8% | intergenic (‑632/‑155) | ydfJ ← / → ydfK | pseudogene, MFS transporter family; interrupted by Qin prophage;Phage or Prophage Related; putative transport protein/cold shock protein, function unknown, Qin prophage |
RA | 1,628,207 | G→A | 91.9% | G110E (GGA→GAA) | pinQ → | Qin prophage; putative site‑specific recombinase |
RA | 1,633,239 | A→G | 16.9% | intergenic (‑315/+48) | cspI ← / ← rzpQ | Qin prophage; cold shock protein/Rz‑like protein, Qin prophage |
RA | 1,658,420 | C→A | 14.9% | S185R (AGC→AGA) | ynfH → | oxidoreductase, membrane subunit |
RA | 1,661,763 | C→A | 66.4% | P353P (CCG→CCT) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
RA | 1,663,893 | C→T | 27.5% | intergenic (‑44/‑63) | ynfL ← / → ynfM | LysR family putative transcriptional regulator/putative arabinose efflux transporter |
RA | 1,673,381 | C→A | 7.0% | S233* (TCA→TAA) | ydgH → | DUF1471 family periplasmic protein |
RA | 1,679,816 | C→A | 21.9% | D344Y (GAC→TAC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
RA | 1,693,517 | G→T | 20.7% | intergenic (‑80/‑95) | malI ← / → malX | transcriptional repressor of Mal regulon/fused maltose and glucose‑specific PTS enzymes: IIB component, IIC component |
RA | 1,696,612 | A→T | 70.5% | E41D (GAA→GAT) | add → | adenosine deaminase |
RA | 1,701,291 | T→G | 9.5% | L39R (CTG→CGG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,702,966 | T→A | 8.2% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,062 | T→A | 11.8% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,071 | A→T | 5.5% | A632A (GCA→GCT) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,706,734 | C→T | 20.7% | intergenic (+319/‑292) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
RA | 1,711,397 | C→T | 70.4% | R28Q (CGA→CAA) | tyrS ← | tyrosyl‑tRNA synthetase |
RA | 1,754,950 | T→A | 51.7% | I367F (ATT→TTT) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
RA | 1,756,616 | C→T | 25.5% | D52N (GAT→AAT) | sufC ← | SufBCD Fe‑S cluster assembly scaffold protein, ATP‑binding protein |
RA | 1,758,835 | T→A | 9.8% | intergenic (‑192/+135) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
RA | 1,770,281 | T→A | 62.8% | D146E (GAT→GAA) | ydiF → | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
RA | 1,783,665 | A→C | 22.8% | D325A (GAC→GCC) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
RA | 1,796,428 | C→A | 9.9% | V134F (GTC→TTC) | thrS ← | threonyl‑tRNA synthetase |
RA | 1,798,001 | T→A | 18.4% | pseudogene (227/1476 nt) | arpB → | pseudogene, ankyrin repeats |
RA | 1,802,047 | G→A | 74.5% | intergenic (+100/‑6) | ydiZ → / → yniA | uncharacterized protein/fructosamine kinase family protein |
RA | 1,805,969 | T→A | 15.0% | L260Q (CTG→CAG) | ydjN → | putative transporter |
RA | 1,823,835 | A→C | 11.0% | W53G (TGG→GGG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
RA | 1,825,763 | C→A | 53.1% | A159A (GCG→GCT) | astC ← | succinylornithine transaminase, PLP‑dependent |
RA | 1,832,413 | C→A | 63.4% | L315L (CTC→CTA) | ynjC → | inner membrane putative ABC superfamily transporter permease |
RA | 1,833,730 | C→A | 63.0% | R3S (CGT→AGT) | ynjE → | molybdopterin synthase sulfurtransferase |
RA | 1,842,161 | Δ1 bp | 26.6% | coding (105/1044 nt) | selD ← | selenophosphate synthase |
RA | 1,853,948 | C→A | 24.3% | W180L (TGG→TTG) | ydjK ← | putative transporter |
RA | 1,864,971 | G→T | 9.5% | M110I (ATG→ATT) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,865,422 | C→A | 72.3% | R261R (CGA→AGA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,872,520 | G→T | 64.5% | P183P (CCG→CCT) | yeaP → | diguanylate cyclase |
RA | 1,889,399 | A→T | 21.8% | D113V (GAT→GTT) | pabB → | aminodeoxychorismate synthase, subunit I |
RA | 1,894,629 | A→T | 8.6% | V405E (GTA→GAA) | yoaE ← | putative membrane protein/conserved protein |
RA | 1,897,318 | T→A | 22.2% | intergenic (+42/‑21) | manX → / → manY | fused mannose‑specific PTS enzymes: IIA component/IIB component/mannose‑specific enzyme IIC component of PTS |
RA | 1,907,967 | C→A | 21.9% | L369F (TTG→TTT) | prc ← | carboxy‑terminal protease for penicillin‑binding protein 3 |
RA | 1,909,342 | T→A | 59.4% | E150D (GAA→GAT) | proQ ← | RNA chaperone, putative ProP translation regulator |
RA | 1,917,059 | A→T | 23.1% | D56E (GAT→GAA) | pphA ← | serine/threonine‑specific protein phosphatase 1 |
RA | 1,932,312 | T→A | 25.6% | L136* (TTA→TAA) | pykA → | pyruvate kinase II |
RA | 1,940,407 | C→A | 24.7% | E11* (GAA→TAA) | yobI ← | uncharacterized protein |
RA | 1,942,066 | G→T | 36.7% | H115N (CAT→AAT) | yebC ← | UPF0082 family protein |
RA | 1,944,177 | C→A | 72.5% | L201L (CTG→CTT) | aspS ← | aspartyl‑tRNA synthetase |
RA | 1,969,291 | G→T | 68.4% | I97I (ATC→ATA) | cheA ← | fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
RA | 1,973,063 | T→C | 22.5% | intergenic (‑609/‑171) | flhD ← / → uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
RA | 1,973,164 | G→A | 28.6% | intergenic (‑710/‑70) | flhD ← / → uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
RA | 1,978,217 | C→T | 22.4% | G112S (GGC→AGC) | araG ← | fused L‑arabinose transporter subunits of ABC superfamily: ATP‑binding components |
RA | 1,986,289 | T→A | 61.8% | N4Y (AAT→TAT) | pgsA ← | phosphatidylglycerophosphate synthetase |
RA | 1,986,398 | G→A | 30.6% | S597L (TCG→TTG) | uvrC ← | excinuclease UvrABC, endonuclease subunit |
RA | 1,997,314 | G→T | 46.2% | intergenic (‑227/‑39) | fliC ← / → fliD | flagellar filament structural protein (flagellin)/flagellar filament capping protein |
RA | 1,999,632 | G→T | 52.7% | intergenic (+73/‑5) | fliT → / → amyA | putative flagellar synthesis and assembly chaperone/cytoplasmic alpha‑amylase |
RA | 2,011,138 | T→A | 22.0% | I368I (ATT→ATA) | fliI → | flagellum‑specific ATP synthase |
RA | 2,020,166 | C→A | 65.7% | D445Y (GAC→TAC) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
RA | 2,035,090 | C→A | 54.1% | Q79K (CAG→AAG) | zinT → | zinc and cadmium binding protein, periplasmic |
RA | 2,048,571 | A→T | 12.5% | P10P (CCA→CCT) | amn → | AMP nucleosidase |
RA | 2,051,654 | C→T | 16.1% | intergenic (‑71/+30) | asnW ← / ← yeeO | tRNA‑Asn/putative multdrug exporter, MATE family |
RA | 2,056,652 | C→A | 6.3% | E51D (GAG→GAT) | ldtA ← | L,D‑transpeptidase linking Lpp to murein |
RA | 2,058,833 | C→T | 21.2% | G138E (GGA→GAA) | cobU ← | bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransferase |
RA | 2,059,588 | C→T | 6.8% | pseudogene (48/87 nt) | yeeH ← | pseudogene |
RA | 2,067,248 | C→A | 24.7% | S743R (AGC→AGA) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
RA | 2,074,680 | A→T | 63.2% | W22R (TGG→AGG) | sbmC ← | DNA gyrase inhibitor |
RA | 2,092,916 | T→A | 19.3% | H60L (CAC→CTC) | ugd ← | UDP‑glucose 6‑dehydrogenase |
RA | 2,098,995 | C→A | 65.3% | G182* (GGA→TGA) | wbbI ← | d‑Galf:alpha‑d‑Glc beta‑1,6‑galactofuranosyltransferase |
RA | 2,101,664 | C→A | 24.4% | Q49H (CAG→CAT) | glf ← | UDP‑galactopyranose mutase, FAD/NAD(P)‑binding |
RA | 2,105,545 | C→A | 28.5% | W333L (TGG→TTG) | rfbB ← | dTDP‑glucose 4,6 dehydratase, NAD(P)‑binding |
RA | 2,107,730 | C→A | 26.9% | E27* (GAG→TAG) | wcaN ← | putative regulatory subunit for GalU |
RA | 2,114,911 | A→T | 68.6% | L42Q (CTG→CAG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
RA | 2,123,274 | G→A | 27.3% | R362R (CGC→CGT) | wcaD ← | putative colanic acid polymerase |
RA | 2,139,910 | G→T | 66.6% | R1055L (CGA→CTA) | yegE → | putative diguanylate cyclase |
RA | 2,144,474 | C→A | 69.8% | intergenic (‑8/‑192) | yegI ← / → yegJ | protein kinase‑related putative non‑specific DNA‑binding protein/uncharacterized protein |
RA | 2,144,521 | A→G | 23.3% | intergenic (‑55/‑145) | yegI ← / → yegJ | protein kinase‑related putative non‑specific DNA‑binding protein/uncharacterized protein |
RA | 2,149,603 | A→T | 55.8% | E287V (GAA→GTA) | mdtB → | multidrug efflux system, subunit B |
RA | 2,152,042 | T→A | 5.9% | M59K (ATG→AAG) | mdtC → | multidrug efflux system, subunit C |
RA | 2,155,911 | C→A | 16.0% | R323S (CGC→AGC) | mdtD → | putative arabinose efflux transporter |
RA | 2,168,487 | A→T | 44.3% | D14E (GAT→GAA) | gatA ← | galactitol‑specific enzyme IIA component of PTS |
RA | 2,168,795 | C→A | 73.9% | D336Y (GAT→TAT) | gatZ ← | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
RA | 2,169,719 | C→A | 18.2% | E28* (GAA→TAA) | gatZ ← | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
RA | 2,170,285 | C→T | 24.2% | A133A (GCG→GCA) | gatY ← | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit |
RA | 2,170,707 | C→A | 19.9% | intergenic (‑24/+284) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,713 | C→A | 21.1% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,724 | G→T | 19.6% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,757 | T→A | 7.5% | intergenic (‑74/+234) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,176,513 | C→T | 25.7% | A206A (GCG→GCA) | yegX ← | putative family 25 glycosyl hydrolase |
RA | 2,179,205 | G→T | 66.3% | A24E (GCG→GAG) | rcnR ← | transcriptional repressor of rcnA |
RA | 2,181,645 | A→G | 61.2% | N83N (AAT→AAC) | yehA ← | putative fimbrial‑like adhesin protein |
RA | 2,193,243 | C→A | 16.4% | pseudogene (443/948 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
RA | 2,194,695 | T→A | 68.9% | L313Q (CTA→CAA) | yehI → | DUF4132 domain‑containing protein |
RA | 2,195,449 | A→T | 66.9% | E564D (GAA→GAT) | yehI → | DUF4132 domain‑containing protein |
RA | 2,216,296 | C→A | 64.0% | I211I (ATC→ATA) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
RA | 2,221,768 | T→A | 24.0% | pseudogene (321/1287 nt) | mdtQ ← | pseudogene; putative channel/filament proteins |
RA | 2,225,190 | C→T | 53.2% | G231G (GGC→GGT) | yohK → | LrgB family inner membrane protein |
RA | 2,237,098 | G→T | 62.0% | H12N (CAT→AAT) | folE ← | GTP cyclohydrolase I |
RA | 2,260,734 | G→T | 21.6% | P337P (CCG→CCT) | yeiQ → | putative NAD‑dependent D‑mannonate oxidoreductase |
RA | 2,263,281 | C→T | 13.3% | intergenic (+235/‑177) | lpxT → / → mepS | lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase/murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein |
RA | 2,264,143 | G→A | 69.0% | intergenic (+119/‑62) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 2,289,092 | A→T | 23.1% | S236R (AGT→AGA) | ccmC ← | heme exporter subunit |
RA | 2,289,374 | C→A | 67.6% | V142V (GTG→GTT) | ccmC ← | heme exporter subunit |
RA | 2,292,972 | C→A | 23.4% | R29L (CGC→CTC) | napH ← | ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) |
RA | 2,298,393 | A→G | 5.2% | intergenic (+521/+194) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,298,467 | T→C | 5.4% | intergenic (+595/+120) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,302,650 | C→A | 18.9% | M57I (ATG→ATT) | alkB ← | oxidative demethylase of N1‑methyladenine or N3‑methylcytosine DNA lesions |
RA | 2,303,070 | T→G | 70.9% | Q272P (CAG→CCG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
RA | 2,305,116 | C→A | 68.9% | intergenic (‑103/+9) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
RA | 2,305,135 | T→C | 64.3% | Y365C (TAC→TGC) | ompC ← | outer membrane porin protein C |
RA | 2,319,958 | T→A | 14.6% | L124* (TTA→TAA) | atoB → | acetyl‑CoA acetyltransferase |
RA | 2,320,977 | C→A | 14.9% | E216* (GAA→TAA) | yfaP ← | DUF2135 family protein, putative host defense protein |
RA | 2,330,502 | C→A | 50.0% | D800Y (GAT→TAT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
RA | 2,343,941 | C→A | 27.7% | D184Y (GAT→TAT) | glpQ ← | periplasmic glycerophosphodiester phosphodiesterase |
RA | 2,352,573 | C→A | 67.9% | P353P (CCG→CCT) | rhmT ← | putative L‑rhamnonate transporter |
RA | 2,353,889 | C→A | 52.3% | V335V (GTG→GTT) | rhmD ← | L‑rhamnonate dehydratase |
RA | 2,359,673 | G→T | 58.7% | M89I (ATG→ATT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
RA | 2,359,866 | G→A | 25.1% | D154N (GAT→AAT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
RA | 2,362,338 | T→A | 65.6% | L274Q (CTG→CAG) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
RA | 2,364,946 | C→A | 24.4% | P187Q (CCG→CAG) | arnT → | 4‑amino‑4‑deoxy‑L‑arabinose transferase |
RA | 2,370,361:1 | +G | 68.8% | coding (711/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,370,987 | C→A | 63.8% | E29* (GAA→TAA) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,372,716 | C→A | 15.4% | R8L (CGA→CTA) | menD ← | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase; SEPHCHC synthase |
RA | 2,376,806 | C→A | 9.0% | D205E (GAC→GAA) | elaD → | protease, capable of cleaving an AMC‑ubiquitin model substrate |
RA | 2,381,131 | G→A | 12.9% | intergenic (+215/+58) | yfbM → / ← yfbN | DUF1877 family protein/uncharacterized protein |
RA | 2,381,961 | C→A | 26.5% | intergenic (‑56/‑153) | yfbN ← / → yfbO | uncharacterized protein/uncharacterized protein |
RA | 2,385,845 | C→T | 5.4% | G226S (GGC→AGC) | nuoM ← | NADH:ubiquinone oxidoreductase, membrane subunit M |
RA | 2,398,704 | C→T | 16.9% | intergenic (‑153/+478) | nuoA ← / ← lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes |
RA | 2,399,210 | G→T | 58.8% | S304* (TCA→TAA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
RA | 2,405,946 | T→G | 62.5% | Q43P (CAG→CCG) | yfbU ← | UPF0304 family protein |
RA | 2,407,789 | G→T | 8.1% | E281* (GAA→TAA) | ackA → | acetate kinase A and propionate kinase 2 |
RA | 2,407,990 | A→T | 17.5% | K348* (AAA→TAA) | ackA → | acetate kinase A and propionate kinase 2 |
RA | 2,416,101 | C→A | 67.1% | intergenic (+21/+27) | yfcH → / ← yfcI | putative NAD‑dependent nucleotide‑sugar epimerase/transposase_31 family protein |
RA | 2,422,841 | C→A | 62.3% | D293Y (GAT→TAT) | purF ← | amidophosphoribosyltransferase |
RA | 2,424,074 | C→T | 65.0% | D57N (GAC→AAC) | cvpA ← | colicin V production membrane protein |
RA | 2,429,812 | A→T | 20.7% | V106E (GTA→GAA) | usg ← | putative semialdehyde dehydrogenase |
RA | 2,447,977 | G→T | 24.7% | pseudogene (504/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
RA | 2,450,335 | C→T | 73.7% | intergenic (‑44/+159) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,450,346 | G→T | 70.2% | intergenic (‑55/+148) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,452,454 | G→T | 67.6% | P62Q (CCG→CAG) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,454,297 | T→G | 60.2% | E39D (GAA→GAC) | yfcZ ← | UPF0381 family protein |
RA | 2,462,531 | G→A | 23.4% | G280E (GGA→GAA) | gtrB → | CPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase |
RA | 2,463,906 | C→A | 23.8% | Q433K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,910 | G→T | 24.8% | R434I (AGA→ATA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,915 | C→A | 19.1% | Q436K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,464,269 | G→A | 22.2% | intergenic (+328/‑25) | gtrS → / → tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
RA | 2,464,528 | G→A | 18.4% | pseudogene (235/291 nt) | tfaS → | pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
RA | 2,466,589 | T→G | 18.8% | pseudogene (476/708 nt) | oweS ← | pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related |
RA | 2,469,418 | C→A | 17.2% | R23R (CGA→AGA) | yfdT → | CPS‑53 (KpLE1) prophage; uncharacterized protein |
RA | 2,474,418 | G→T | 73.1% | S413* (TCA→TAA) | emrY ← | putative multidrug efflux system |
RA | 2,495,786 | C→T | 25.0% | D727N (GAT→AAT) | fryA ← | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component |
RA | 2,509,632 | C→A | 14.3% | L560F (TTG→TTT) | yfeA ← | putative diguanylate cyclase |
RA | 2,520,229 | G→T | 16.7% | intergenic (‑14/‑76) | yfeR ← / → yfeH | transcriptional regulator of yefH/putative inorganic ion transporter |
RA | 2,520,652 | C→A | 67.6% | I116I (ATC→ATA) | yfeH → | putative inorganic ion transporter |
RA | 2,534,961 | C→T | 23.8% | G26G (GGG→GGA) | cysW ← | sulfate/thiosulfate ABC transporter subunit |
RA | 2,536,051 | G→T | 19.3% | I279I (ATC→ATA) | cysP ← | thiosulfate‑binding protein |
RA | 2,549,676 | C→A | 65.4% | L28L (CTG→CTT) | eutL ← | putative ethanol utilization carboxysome structural protein |
RA | 2,550,263 | G→T | 18.8% | L132I (CTC→ATC) | eutC ← | ethanolamine ammonia‑lyase, small subunit (light chain) |
RA | 2,556,774 | G→A | 19.9% | intergenic (+298/‑177) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
RA | 2,568,720 | C→T | 64.9% | A33T (GCC→ACC) | eutP ← | putative P‑loop NTPase ethanolamine utilization protein |
RA | 2,569,336 | C→A | 22.0% | intergenic (‑172/+121) | eutS ← / ← maeB | putative ethanol utilization carboxysome structural protein/malic enzyme: putative oxidoreductase/putative phosphotransacetylase |
RA | 2,576,325 | C→A | 66.3% | E171D (GAG→GAT) | nudK ← | GDP‑mannose pyrophosphatase |
RA | 2,580,597 | C→A | 18.9% | T503K (ACG→AAG) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP (NarL) |
RA | 2,587,029:1 | +G | 66.6% | coding (101/699 nt) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
RA | 2,589,933 | G→A | 69.4% | T55I (ACC→ATC) | ypfJ ← | putative neutral zinc metallopeptidase |
RA | 2,591,933 | G→T | 19.8% | Q98K (CAG→AAG) | bamC ← | BamABCDE complex OM biogenesis lipoprotein |
RA | 2,606,516 | G→T | 66.9% | D420Y (GAC→TAC) | hyfR → | hydrogenase‑4 transcriptional activator |
RA | 2,610,919 | C→A | 62.1% | intergenic (+3/‑18) | bepA → / → yfgD | periplasmic metalloprotease and chaperone for OM protein maintenance and assembly/putative oxidoreductase |
RA | 2,614,168 | C→A | 71.5% | D22Y (GAT→TAT) | upp ← | uracil phosphoribosyltransferase |
RA | 2,617,102 | G→T | 20.2% | D234Y (GAT→TAT) | ppk → | polyphosphate kinase, component of RNA degradosome |
RA | 2,618,284 | C→T | 22.3% | L628L (CTG→TTG) | ppk → | polyphosphate kinase, component of RNA degradosome |
RA | 2,619,125 | G→T | 37.8% | G218C (GGT→TGT) | ppx → | exopolyphosphatase |
RA | 2,619,383 | G→T | 19.9% | E304* (GAA→TAA) | ppx → | exopolyphosphatase |
RA | 2,621,410 | G→T | 30.3% | T296T (ACC→ACA) | yfgF ← | cyclic‑di‑GMP phosphodiesterase, anaerobic |
RA | 2,633,091 | C→A | 5.7% | V282L (GTG→TTG) | hisS ← | histidyl tRNA synthetase |
RA | 2,643,286 | C→A | 17.4% | A787A (GCG→GCT) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
RA | 2,645,252 | T→A | 19.4% | K132I (AAA→ATA) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
RA | 2,645,521 | T→A | 16.2% | S42S (TCA→TCT) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
RA | 2,651,665 | G→T | 65.1% | G210G (GGC→GGA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
RA | 2,654,144 | G→T | 24.0% | I249I (ATC→ATA) | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
RA | 2,671,274 | C→A | 63.5% | T149T (ACG→ACT) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
RA | 2,681,873 | T→A | 67.9% | Q97L (CAG→CTG) | glrR ← | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
RA | 2,683,829 | C→A | 65.2% | R210L (CGT→CTT) | glrK ← | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
RA | 2,702,530 | G→T | 5.9% | A78A (GCC→GCA) | rseA ← | anti‑sigma factor |
RA | 2,711,673 | A→C | 11.4% | V72G (GTT→GGT) | yfiF ← | putative methyltransferase |
RA | 2,715,643 | G→T | 62.6% | E778* (GAA→TAA) | pka → | protein lysine acetyltransferase |
RA | 2,715,659 | C→A | 22.7% | A783E (GCG→GAG) | pka → | protein lysine acetyltransferase |
RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
RA | 2,726,786 | C→A | 75.1% | A249A (GCG→GCT) | clpB ← | protein disaggregation chaperone |
RA | 2,734,317 | G→T | 17.7% | H65N (CAT→AAT) | aroF ← | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible |
RA | 2,744,009 | T→A | 27.6% | D20V (GAT→GTT) | grpE ← | heat shock protein |
RA | 2,748,452 | T→C | 19.9% | F66F (TTT→TTC) | smpB → | trans‑translation protein |
RA | 2,752,711 | T→C | 20.6% | L123P (CTT→CCT) | yfjI → | CP4‑57 prophage; uncharacterized protein |
RA | 2,752,877 | C→A | 27.3% | G178G (GGC→GGA) | yfjI → | CP4‑57 prophage; uncharacterized protein |
RA | 2,759,556 | C→T | 17.9% | P94S (CCT→TCT) | rnlA → | CP4‑57 prophage; RNase LS |
RA | 2,759,757 | C→A | 25.8% | L161I (CTC→ATC) | rnlA → | CP4‑57 prophage; RNase LS |
RA | 2,761,759 | C→A | 14.8% | R231R (CGA→AGA) | yfjP → | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
RA | 2,767,939 | C→T | 27.0% | Y421Y (TAC→TAT) | yfjW → | CP4‑57 prophage; putative inner membrane protein |
RA | 2,771,358 | G→A | 63.6% | intergenic (+217/+147) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
RA | 2,779,067 | C→A | 66.6% | intergenic (‑697/+54) | ypjC ← / ← ileY | pseudogene/tRNA‑Ile |
RA | 2,788,163 | C→A | 5.5% | S184R (AGC→AGA) | gabP → | gamma‑aminobutyrate transporter |
RA | 2,792,473 | G→A | 11.8% | intergenic (‑619/‑50) | stpA ← / → alaE | DNA binding protein, nucleoid‑associated/alanine exporter, alanine‑inducible, stress‑responsive |
RA | 2,793,412 | G→T | 31.4% | intergenic (‑59/‑93) | ygaC ← / → ygaM | uncharacterized protein/DUF883 family protein, putative membrane‑anchored ribosome‑binding protein |
JC | 2,811,717 | Δ134 bp | 7.0% | [argV] | [argV] | |
RA | 2,825,783 | C→T | 62.7% | intergenic (‑135/‑52) | norR ← / → norV | anaerobic nitric oxide reductase DNA‑binding transcriptional activator/anaerobic nitric oxide reductase flavorubredoxin |
RA | 2,828,952 | C→A | 58.0% | T611T (ACG→ACT) | hypF ← | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
RA | 2,841,044 | C→A | 61.8% | A519A (GCG→GCT) | hycC ← | hydrogenase 3, membrane subunit |
RA | 2,850,790 | C→A | 67.9% | I113I (ATC→ATA) | mutS → | methyl‑directed mismatch repair protein |
RA | 2,873,087 | G→T | 65.3% | V15V (GTC→GTA) | ygbT ← | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
RA | 2,876,760 | C→T | 69.4% | G246G (GGG→GGA) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
RA | 2,877,756 | T→C | 8.2% | intergenic (‑259/+156) | casA ← / ← ygcB | CRISP RNA (crRNA) containing Cascade antiviral complex protein/R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,878,668 | G→T | 65.2% | V637V (GTC→GTA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,879,449 | G→T | 54.4% | S377* (TCA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,888,584 | G→T | 64.2% | I185I (ATC→ATA) | ygcQ ← | putative flavoprotein |
RA | 2,893,420 | C→A | 19.9% | M71I (ATG→ATT) | ygcW ← | putative dehydrogenase |
RA | 2,902,413 | G→A | 22.1% | P205S (CCT→TCT) | pyrG ← | CTP synthetase |
RA | 2,905,077 | C→A | 21.3% | R645L (CGC→CTC) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
RA | 2,914,443 | C→A | 15.7% | V339V (GTG→GTT) | gudP ← | putative D‑glucarate transporter |
RA | 2,927,164 | C→T | 17.9% | intergenic (‑117/‑430) | fucA ← / → fucP | L‑fuculose‑1‑phosphate aldolase/L‑fucose transporter |
RA | 2,931,717 | C→A | 63.9% | N307K (AAC→AAA) | fucK → | L‑fuculokinase |
RA | 2,934,843 | G→T | 69.4% | H50N (CAT→AAT) | ygdD ← | UPF0382 family inner membrane protein |
RA | 2,936,686 | G→T | 37.3% | intergenic (‑182/‑10) | ygdI ← / → csdA | DUF903 family verified lipoprotein/cysteine sulfinate desulfinase |
RA | 2,940,829 | A→T | 9.2% | intergenic (+7/‑27) | metZ → / → metW | tRNA‑Met/tRNA‑Met |
RA | 2,940,834 | A→T | 8.2% | intergenic (+12/‑22) | metZ → / → metW | tRNA‑Met/tRNA‑Met |
RA | 2,950,690 | C→A | 24.7% | K518N (AAG→AAT) | ptrA ← | protease III |
RA | 2,959,004 | G→A | 64.4% | I131I (ATC→ATT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
RA | 2,962,643 | A→C | 20.8% | intergenic (‑307/‑378) | rppH ← / → mutH | RNA pyrophosphohydrolase/methyl‑directed mismatch repair protein |
RA | 2,962,657 | G→A | 8.2% | intergenic (‑321/‑364) | rppH ← / → mutH | RNA pyrophosphohydrolase/methyl‑directed mismatch repair protein |
RA | 2,970,289 | T→G | 22.3% | L111R (CTG→CGG) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
RA | 2,981,600 | G→C | 11.0% | intergenic (+73/‑261) | yqeH → / → yqeI | putative LuxR family transcriptional regulator/putative transcriptional regulator |
RA | 2,986,781 | T→A | 27.9% | I443I (ATT→ATA) | ygeH → | putative transcriptional regulator |
RA | 2,989,295 | C→A | 69.9% | pseudogene (85/261 nt) | ygeN ← | pseudogene |
RA | 2,989,350 | T→C | 7.7% | pseudogene (30/261 nt) pseudogene (370/399 nt) |
ygeN ← ygeO ← |
pseudogene pseudogene, orgA homolog, part of T3SS PAI ETT2 remnant |
RA | 2,993,211 | C→A | 72.3% | V14L (GTG→TTG) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
RA | 2,993,699 | C→A | 59.0% | intergenic (‑449/‑5) | ygeR ← / → xdhA | LysM domain‑containing M23 family putative peptidase; septation lipoprotein/xanthine dehydrogenase, molybdenum binding subunit |
RA | 3,007,278 | C→A | 7.5% | V107V (GTG→GTT) | yqeB ← | XdhC‑CoxI family protein with NAD(P)‑binding Rossman fold |
RA | 3,017,285 | G→T | 63.9% | D871Y (GAC→TAC) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
RA | 3,017,759 | A→T | 23.5% | D17V (GAT→GTT) | xanQ → | xanthine permease |
RA | 3,020,228 | G→T | 23.1% | A368A (GCG→GCT) | guaD → | guanine deaminase |
RA | 3,024,983 | C→G | 61.6% | G86G (GGC→GGG) | uacT → | uric acid permease |
RA | 3,025,678 | A→T | 32.2% | Q318L (CAA→CTA) | uacT → | uric acid permease |
RA | 3,025,954 | A→T | 7.0% | H410L (CAC→CTC) | uacT → | uric acid permease |
RA | 3,034,205 | G→T | 23.8% | L75L (CTC→CTA) | sdhE ← | flavinator of succinate dehydrogenase; antitoxin of CptAB toxin‑antitoxin pair |
RA | 3,039,409 | T→G | 15.1% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,044,464 | G→A | 66.2% | intergenic (‑438/+10) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
RA | 3,056,703 | C→A | 28.5% | R120S (CGC→AGC) | argK → | membrane ATPase/protein kinase |
RA | 3,056,837 | C→A | 30.9% | V164V (GTC→GTA) | argK → | membrane ATPase/protein kinase |
RA | 3,060,957 | C→A | 26.6% | A161A (GCG→GCT) | yggE ← | oxidative stress defense protein |
RA | 3,064,914 | G→T | 50.5% | I356I (ATC→ATA) | pgk ← | phosphoglycerate kinase |
RA | 3,067,329 | A→G | 18.3% | intergenic (‑279/+6) | epd ← / ← yggC | D‑erythrose 4‑phosphate dehydrogenase/putative PanK family P‑loop kinase |
RA | 3,067,371 | C→A | 24.5% | E226D (GAG→GAT) | yggC ← | putative PanK family P‑loop kinase |
RA | 3,075,114 | C→A | 67.2% | intergenic (‑120/‑158) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era |
RA | 3,076,526 | C→A | 62.4% | D211Y (GAC→TAC) | speB ← | agmatinase |
RA | 3,080,330 | C→T | 26.1% | S89F (TCC→TTC) | metK → | S‑adenosylmethionine synthetase |
RA | 3,080,618 | T→A | 68.9% | V185E (GTG→GAG) | metK → | S‑adenosylmethionine synthetase |
RA | 3,088,517 | C→A | 11.2% | R21S (CGT→AGT) | yggS → | UPF0001 family protein, PLP‑binding |
RA | 3,088,780 | C→A | 6.2% | I108I (ATC→ATA) | yggS → | UPF0001 family protein, PLP‑binding |
RA | 3,103,319 | C→T | 27.5% | I136I (ATC→ATT) | yqgA → | DUF554 family putative inner membrane protein |
RA | 3,106,398 | A→C | 23.1% | intergenic (‑98/+28) | yghF ← / ← yghG | pseudogene, secretion pathway protein, C‑type protein homology;putative transport; Not classified; putative general secretion pathway for protein export (GSP)/secretin (GspDbeta) OM localization lipoprotein pilotin |
RA | 3,110,751 | C→A | 66.5% | R574L (CGT→CTT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,111,434 | C→A | 53.5% | A346A (GCG→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,119,047 | C→A | 7.4% | D279Y (GAC→TAC) | glcE ← | glycolate oxidase FAD binding subunit |
RA | 3,120,216 | C→A | 62.2% | D389Y (GAT→TAT) | glcD ← | glycolate oxidase subunit, FAD‑linked |
RA | 3,137,675 | C→A | 15.3% | P275P (CCG→CCT) | hybA ← | hydrogenase 2 4Fe‑4S ferredoxin‑type component |
RA | 3,144,158 | C→A | 49.3% | intergenic (+253/+19) | yghA → / ← exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
RA | 3,169,378 | G→T | 21.3% | S272* (TCA→TAA) | cpdA ← | 3',5' cAMP phosphodiesterase |
RA | 3,171,989 | G→T | 16.2% | A172A (GCG→GCT) | tolC → | transport channel |
RA | 3,173,669 | G→T | 66.2% | A189A (GCG→GCT) | ygiB → | DUF1190 family protein |
RA | 3,182,370 | C→A | 18.8% | pseudogene (1591/2445 nt) | yqiG → | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
RA | 3,185,705 | G→T | 15.4% | D47Y (GAT→TAT) | yqiJ → | DUF1449 family inner membrane protein |
RA | 3,190,143 | C→A | 15.0% | intergenic (‑31/+17) | hldE ← / ← glnE | fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase/fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
RA | 3,193,298 | C→A | 17.2% | D343Y (GAT→TAT) | ygiF ← | inorganic triphosphatase |
RA | 3,201,824 | G→T | 5.2% | E148* (GAG→TAG) | ttdT → | L‑tartrate/succinate antiporte |
RA | 3,212,068 | A→C | 23.7% | I123S (ATC→AGC) | aer ← | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
RA | 3,224,927 | C→A | 64.0% | intergenic (+329/‑97) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
RA | 3,230,658 | T→A | 19.4% | intergenic (+67/‑12) | ygjQ → / → ygjR | DUF218 superfamily protein/putative NAD(P)‑dependent dehydrogenase |
RA | 3,237,091 | T→A | 18.4% | Q337L (CAG→CTG) | uxaC ← | uronate isomerase |
RA | 3,245,848 | G→T | 65.8% | L62L (CTG→CTT) | yhaH → | DUF805 family inner membrane protein |
RA | 3,246,908 | G→A | 25.1% | R222R (CGC→CGT) | yhaJ ← | LysR family putative transcriptional regulator |
RA | 3,249,372 | C→A | 19.2% | A213A (GCG→GCT) | yhaM ← | putative L‑serine dehydratase alpha chain |
RA | 3,252,258 | C→A | 67.3% | D251Y (GAT→TAT) | tdcG ← | L‑serine dehydratase 3, anaerobic |
RA | 3,263,315 | T→C | 5.1% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,263,460 | C→A | 10.5% | intergenic (+499/+115) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,266,646 | C→A | 58.9% | G91C (GGT→TGT) | garL ← | alpha‑dehydro‑beta‑deoxy‑D‑glucarate aldolase |
RA | 3,272,159 | T→C | 26.1% | intergenic (‑135/‑114) | agaR ← / → kbaZ | transcriptional repressor of the aga regulon/tagatose 6‑phosphate aldolase 1, kbaZ subunit |
RA | 3,279,240 | T→G | 5.4% | I135S (ATT→AGT) | agaD → | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
RA | 3,283,448 | G→T | 18.2% | A426S (GCA→TCA) | yraJ → | putative outer membrane protein |
RA | 3,302,027 | G→T | 67.7% | S86* (TCG→TAG) | nlpI ← | lipoprotein involved in osmotic sensitivity and filamentation |
RA | 3,313,793 | C→A | 20.7% | D394Y (GAC→TAC) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 3,314,870 | C→A | 62.3% | A35S (GCG→TCG) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 3,324,218 | G→T | 22.6% | A299E (GCG→GAG) | obgE ← | GTPase involved in cell partioning and DNA repair |
RA | 3,324,553 | C→A | 27.4% | A187A (GCG→GCT) | obgE ← | GTPase involved in cell partioning and DNA repair |
RA | 3,347,778 | G→A | 62.6% | intergenic (‑369/‑306) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
RA | 3,347,792 | A→G | 25.4% | intergenic (‑383/‑292) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
RA | 3,354,405 | C→T | 58.7% | intergenic (+430/‑130) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
RA | 3,365,607 | G→T | 69.7% | I109I (ATC→ATA) | nanT ← | sialic acid transporter |
RA | 3,366,254 | C→T | 15.1% | D228N (GAT→AAT) | nanA ← | N‑acetylneuraminate lyase |
RA | 3,373,985 | C→A | 70.9% | intergenic (+37/‑117) | yhcB → / → degQ | DUF1043 family inner membrane‑anchored protein/serine endoprotease, periplasmic |
RA | 3,375,260 | G→T | 68.9% | D387Y (GAT→TAT) | degQ → | serine endoprotease, periplasmic |
RA | 3,376,534 | C→A | 19.3% | R326S (CGC→AGC) | degS → | serine endoprotease, periplasmic |
RA | 3,379,204 | C→T | 16.6% | intergenic (+44/+12) | yhcN → / ← yhcO | cadmium and peroxide resistance protein, stress‑induced/putative barnase inhibitor |
RA | 3,385,571 | C→G | 8.5% | intergenic (‑184/+246) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,386,399 | C→A | 6.4% | T1073T (ACG→ACT) | yhdP ← | DUF3971‑AsmA2 domains protein |
RA | 3,389,233 | T→G | 17.6% | S129R (AGT→CGT) | yhdP ← | DUF3971‑AsmA2 domains protein |
RA | 3,389,910 | T→A | 22.1% | K415N (AAA→AAT) | rng ← | ribonuclease G |
RA | 3,396,082 | G→T | 63.8% | R204S (CGT→AGT) | csrD ← | targeting factor for csrBC sRNA degradation |
RA | 3,406,591 | C→T | 30.8% | T78T (ACG→ACA) | acrS ← | acrAB operon transcriptional repressor |
RA | 3,416,890 | T→G | 7.4% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
RA | 3,440,151 | G→T | 68.9% | I31I (ATC→ATA) | rpsN ← | 30S ribosomal subunit protein S14 |
RA | 3,440,444 | G→T | 67.2% | S118S (TCC→TCA) | rplE ← | 50S ribosomal subunit protein L5 |
RA | 3,440,832 | T→C | 62.8% | N99D (AAC→GAC) | rplX ← | 50S ribosomal subunit protein L24 |
RA | 3,453,663 | C→A | 24.9% | S163* (TCA→TAA) | gspF → | general secretory pathway component, cryptic |
RA | 3,455,867 | C→A | 68.9% | I55I (ATC→ATA) | gspJ → | putative general secretory pathway component, cryptic |
RA | 3,465,121 | C→A | 20.4% | D585Y (GAC→TAC) | fusA ← | protein chain elongation factor EF‑G, GTP‑binding |
RA | 3,473,139 | G→T | 70.9% | I276I (ATC→ATA) | kefB ← | potassium:proton antiporter |
RA | 3,473,885 | C→A | 21.1% | G28C (GGT→TGT) | kefB ← | potassium:proton antiporter |
RA | 3,479,769 | A→T | 60.1% | E97D (GAA→GAT) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
RA | 3,488,966 | G→C | 59.0% | A533P (GCC→CCC) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,489,397 | C→A | 45.7% | F676L (TTC→TTA) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,501,571 | C→A | 54.7% | G127C (GGC→TGC) | php ← | phosphotriesterase homology protein |
RA | 3,504,362 | A→G | 25.8% | intergenic (‑27/+57) | yhfX ← / ← yhfY | putative pyridoxal 5'‑phosphate binding protein/PRD domain protein |
RA | 3,507,749 | G→T | 48.8% | H224N (CAT→AAT) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
RA | 3,512,114 | C→A | 9.3% | E104* (GAA→TAA) | aroK ← | shikimate kinase I |
RA | 3,519,657 | G→T | 100% | intergenic (‑149/‑171) | nudE ← / → yrfF | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH/inner membrane protein |
RA | 3,522,558 | G→T | 26.1% | A177A (GCG→GCT) | yrfG → | GMP/IMP nucleotidase |
RA | 3,543,959 | G→T | 63.7% | A625E (GCG→GAG) | malP ← | maltodextrin phosphorylase |
RA | 3,545,150 | G→C | 6.1% | P228R (CCG→CGG) | malP ← | maltodextrin phosphorylase |
RA | 3,546,300 | G→T | 16.8% | intergenic (‑468/‑144) | malP ← / → malT | maltodextrin phosphorylase/mal regulon transcriptional activator |
RA | 3,549,415 | T→G | 30.3% | Q265P (CAG→CCG) | rtcA ← | RNA 3'‑terminal phosphate cyclase |
RA | 3,555,311 | T→C | 28.1% | intergenic (‑128/‑62) | glpE ← / → glpD | thiosulfate:cyanide sulfurtransferase (rhodanese)/sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
RA | 3,555,325 | T→C | 30.4% | intergenic (‑142/‑48) | glpE ← / → glpD | thiosulfate:cyanide sulfurtransferase (rhodanese)/sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
RA | 3,561,574 | C→A | 69.1% | W372L (TGG→TTG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
RA | 3,577,878 | T→C | 16.0% | intergenic (+209/‑241) | yrhA → / → yrhB | pseudogene, interrupted by IS1E/stable heat shock chaperone |
RA | 3,609,368 | T→A | 27.7% | F256L (TTT→TTA) | nikB → | nickel transporter subunit |
RA | 3,630,907 | G→A | 26.0% | intergenic (‑137/‑95) | yhiN ← / → pitA | putative oxidoreductase/phosphate transporter, low‑affinity; tellurite importer |
RA | 3,632,594 | C→T | 21.8% | intergenic (+93/+151) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
RA | 3,639,551 | C→A | 43.9% | T269T (ACC→ACA) | rlmJ → | 23S rRNA m(6)A2030 methyltransferase, SAM‑dependent |
RA | 3,642,278 | T→C | 13.0% | intergenic (+37/‑17) | arsR → / → arsB | arsenical resistance operon transcriptional repressor; autorepressor/arsenite/antimonite transporter |
RA | 3,649,457 | C→T | 26.3% | G66S (GGT→AGT) | hdeB ← | acid‑resistance protein |
RA | 3,657,875 | T→C | 25.0% | K35R (AAA→AGA) | gadW ← | transcriptional activator of gadA and gadBC; repressor of gadX |
RA | 3,662,660 | T→C | 56.8% | intergenic (‑112/‑292) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
RA | 3,662,801 | T→A | 25.2% | intergenic (‑253/‑151) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
RA | 3,676,141 | T→C | 20.6% | I223V (ATT→GTT) | dctA ← | C4‑dicarboxylic acid, orotate and citrate transporter |
RA | 3,679,301 | T→G | 71.5% | Q1078P (CAG→CCG) | bcsC ← | cellulose synthase subunit |
RA | 3,679,324 | C→A | 72.3% | M1070I (ATG→ATT) | bcsC ← | cellulose synthase subunit |
RA | 3,680,910 | G→T | 66.1% | H542N (CAT→AAT) | bcsC ← | cellulose synthase subunit |
RA | 3,708,406 | A→T | 23.7% | L450Q (CTG→CAG) | bisC ← | biotin sulfoxide reductase |
RA | 3,717,788 | C→A | 70.3% | P297P (CCG→CCT) | glyQ ← | glycine tRNA synthetase, alpha subunit |
RA | 3,721,469 | A→C | 6.2% | D421E (GAT→GAG) | xylB ← | xylulokinase |
RA | 3,721,485 | T→G | 7.5% | Y416S (TAC→TCC) | xylB ← | xylulokinase |
RA | 3,738,431 | C→A | 62.6% | P90T (CCA→ACA) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
RA | 3,774,382 | T→G | 11.6% | intergenic (+5/‑193) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,779,281 | C→G | 5.9% | A221G (GCT→GGT) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
RA | 3,785,915 | G→T | 72.1% | intergenic (‑4/+271) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
JC JC | 3,795,902 | IS5 (+) +4 bp | 6.4% | coding (514‑517/1020 nt) | waaR ← | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase |
RA | 3,810,195 | C→A | 70.5% | R54S (CGT→AGT) | yicC → | UPF0701 family protein |
RA | 3,814,302 | T→A | 37.4% | S77C (AGC→TGC) | ligB ← | DNA ligase, NAD(+)‑dependent |
RA | 3,816,601 | A→T | 92.0% | H281L (CAC→CTC) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,818,010 | C→A | 68.8% | H46N (CAT→AAT) | trmH → | tRNA mG18‑2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,822,340 | A→C | 14.3% | Q12H (CAA→CAC) | xanP → | xanthine permease |
RA | 3,825,702 | C→A | 70.6% | K732N (AAG→AAT) | yicI ← | putative alpha‑glucosidase |
RA | 3,830,134 | A→G | 19.2% | intergenic (+218/‑179) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,830,197 | C→A | 72.0% | intergenic (+281/‑116) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,830,311 | G→T | 69.5% | intergenic (+395/‑2) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,833,272 | T→G | 24.1% | S28R (AGC→CGC) | nlpA ← | cytoplasmic membrane lipoprotein‑28 |
RA | 3,834,271 | T→A | 23.4% | K277* (AAA→TAA) | nepI ← | putative transporter |
RA | 3,841,586 | G→A | 24.3% | G133G (GGC→GGT) | uhpC ← | membrane protein regulates uhpT expression |
RA | 3,860,159 | C→A | 64.8% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
RA | 3,869,881 | T→A | 18.4% | K144N (AAA→AAT) | yidA ← | sugar phosphate phosphatase; substrates include erythrose 4‑P and mannose 1‑P phosphatase |
RA | 3,870,295 | A→T | 23.6% | I6I (ATT→ATA) | yidA ← | sugar phosphate phosphatase; substrates include erythrose 4‑P and mannose 1‑P phosphatase |
RA | 3,870,977 | T→A | 5.1% | intergenic (‑152/+88) | yidB ← / ← gyrB | DUF937 family protein/DNA gyrase, subunit B |
RA | 3,871,570 | A→C | 25.1% | L637R (CTG→CGG) | gyrB ← | DNA gyrase, subunit B |
RA | 3,894,935 | T→A | 5.1% | T216S (ACC→TCC) | bglH ← | carbohydrate‑specific outer membrane porin, cryptic |
RA | 3,895,954 | C→A | 16.2% | V370F (GTT→TTT) | bglB ← | cryptic phospho‑beta‑glucosidase B |
RA | 3,897,492 | G→T | 21.5% | P489Q (CCG→CAG) | bglF ← | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
RA | 3,899,662 | T→A | 16.3% | K89I (AAA→ATA) | bglG ← | transcriptional antiterminator of the bgl operon |
RA | 3,901,867 | T→G | 6.5% | intergenic (‑141/+42) | pstB ← / ← pstA | phosphate transporter subunit/phosphate transporter subunit |
RA | 3,902,982 | C→A | 23.0% | S259S (TCG→TCT) | pstC ← | phosphate transporter subunit |
RA | 3,905,246 | C→A | 16.6% | D595Y (GAC→TAC) | glmS ← | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
RA | 3,908,261 | T→A | 20.2% | L100F (TTA→TTT) | glmU ← | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
RA | 3,910,894 | C→A | 65.8% | M244I (ATG→ATT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
RA | 3,915,397 | A→C | 27.4% | N5K (AAT→AAG) | atpB ← | F0 sector of membrane‑bound ATP synthase, subunit a |
RA | 3,916,052 | C→A | 39.1% | intergenic (‑252/+365) | atpI ← / ← rsmG | ATP synthase, membrane‑bound accessory factor/16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
RA | 3,916,494 | C→A | 24.4% | E183* (GAA→TAA) | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
RA | 3,916,830 | C→A | 69.9% | D71Y (GAT→TAT) | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
RA | 3,923,700 | G→T | 19.7% | R252S (CGC→AGC) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
RA | 3,925,986 | G→T | 6.5% | M437I (ATG→ATT) | kup → | potassium transporter |
RA | 3,926,496 | A→C | 28.0% | E607D (GAA→GAC) | kup → | potassium transporter |
RA | 3,926,831 | G→T | 58.2% | D41Y (GAT→TAT) | rbsD → | putative cytoplasmic sugar‑binding protein |
RA | 3,931,245 | C→A | 15.7% | R198S (CGT→AGT) | rbsK → | ribokinase |
RA | 3,933,817 | G→T | 18.2% | I52I (ATC→ATA) | hsrA ← | putative multidrug or homocysteine efflux system |
RA | 3,946,683 | G→T | 5.9% | P280P (CCG→CCT) | ilvE → | branched‑chain amino‑acid aminotransferase |
RA | 3,954,751 | G→T | 21.6% | V239L (GTG→TTG) | rep → | DNA helicase and single‑stranded DNA‑dependent ATPase |
RA | 3,958,333 | C→A | 18.2% | E220* (GAA→TAA) | rhlB ← | ATP‑dependent RNA helicase |
RA | 3,960,036 | G→A | 92.7% | R87H (CGC→CAC) | rho → | transcription termination factor |
RA | 3,960,100 | A→T | 8.0% | E108D (GAA→GAT) | rho → | transcription termination factor |
RA | 3,964,617 | A→T | 27.9% | S375S (TCA→TCT) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
RA | 3,966,854 | C→A | 61.9% | R325S (CGT→AGT) | rffG → | dTDP‑glucose 4,6‑dehydratase |
RA | 3,969,710 | G→T | 55.6% | G25C (GGT→TGT) | wzxE → | O‑antigen translocase |
RA | 3,971,254 | C→T | 18.8% | L124F (CTT→TTT) | wecF → | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
RA | 3,988,075 | T→A | 62.7% | V65E (GTG→GAG) | yifL → | putative lipoprotein |
RA | 3,994,076 | A→T | 67.0% | L114* (TTA→TAA) | yigE ← | DUF2233 family protein |
RA | 3,994,247 | A→T | 70.1% | V57E (GTG→GAG) | yigE ← | DUF2233 family protein |
RA | 3,995,906 | G→T | 23.5% | S85Y (TCT→TAT) | yigF ← | putative inner membrane protein |
RA | 4,005,640 | A→C | 22.7% | I179M (ATT→ATG) | metR ← | methionine biosynthesis regulon transcriptional regulator |
RA | 4,006,260 | G→A | 18.9% | intergenic (‑84/‑153) | metR ← / → metE | methionine biosynthesis regulon transcriptional regulator/5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
RA | 4,006,954 | T→A | 13.3% | L181Q (CTG→CAG) | metE → | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
RA | 4,009,705 | G→A | 68.0% | intergenic (‑176/‑86) | ysgA ← / → udp | putative carboxymethylenebutenolidase/uridine phosphorylase |
RA | 4,032,011 | A→C | 23.9% | noncoding (1133/2905 nt) | rrlA → | 23S ribosomal RNA of rrnA operon |
RA | 4,042,128 | A→C | 13.1% | K601N (AAA→AAC) | polA → | fused DNA polymerase I 5'‑>3' polymerase/3'‑>5' exonuclease/5'‑>3' exonuclease |
RA | 4,056,018 | T→A | 73.6% | F138I (TTC→ATC) | yihN → | MFS transporter family protein |
RA | 4,062,424 | G→T | 65.0% | I71I (ATC→ATA) | yihQ ← | alpha‑glucosidase |
RA | 4,063,530 | A→C | 31.5% | C78G (TGT→GGT) | yihR ← | mutarotase superfamily protein, YihR family |
RA | 4,066,133 | T→G | 71.9% | S267R (AGC→CGC) | yihU ← | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
RA | 4,068,208 | C→A | 67.3% | G60G (GGC→GGA) | yihW → | DeoR family putative transcriptional regulator |
RA | 4,076,055 | T→G | 12.1% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
RA | 4,076,068 | T→G | 6.1% | T18P (ACC→CCC) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
RA | 4,094,362 | C→A | 64.3% | W181L (TGG→TTG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
RA | 4,096,163 | G→T | 33.2% | R139L (CGA→CTA) | cpxP → | inhibitor of the cpx response; periplasmic adaptor protein |
RA | 4,097,822 | G→T | 68.5% | E115* (GAA→TAA) | pfkA → | 6‑phosphofructokinase I |
RA | 4,127,022 | T→G | 67.4% | E188D (GAA→GAC) | yijF ← | DUF1287 family protein |
RA | 4,143,375 | A→G | 5.3% | intergenic (‑349/+249) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
RA | 4,148,380 | C→T | 25.8% | intergenic (‑58/‑38) | oxyS ← / → oxyR | sRNA antisense regulator activates genes that detoxify oxidative damage, Hfq‑dependent/oxidative and nitrosative stress transcriptional regulator |
RA | 4,148,403 | G→A | 27.2% | intergenic (‑81/‑15) | oxyS ← / → oxyR | sRNA antisense regulator activates genes that detoxify oxidative damage, Hfq‑dependent/oxidative and nitrosative stress transcriptional regulator |
RA | 4,158,250 | A→C | 13.6% | intergenic (+122/‑50) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
RA | 4,176,823 | G→T | 68.3% | D516Y (GAC→TAC) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,178,758 | G→T | 35.7% | G1161C (GGT→TGT) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,194,324 | T→A | 5.8% | R359R (CGT→CGA) | zraR → | fused DNA‑binding response regulator in two‑component regulatory system with ZraS: response regulator/sigma54 interaction protein |
RA | 4,208,127 | A→T | 22.7% | D364V (GAC→GTC) | aceA → | isocitrate lyase |
RA | 4,211,576 | G→T | 65.3% | S280R (AGC→AGA) | arpA ← | ankyrin repeat protein |
RA | 4,211,803 | G→A | 64.8% | P205S (CCT→TCT) | arpA ← | ankyrin repeat protein |
RA | 4,213,602 | T→C | 25.1% | intergenic (‑46/‑154) | iclR ← / → metH | transcriptional repressor/homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
RA | 4,230,913 | A→T | 61.9% | W424R (TGG→AGG) | xylE ← | D‑xylose transporter |
RA | 4,236,535 | T→A | 8.1% | intergenic (‑188/‑177) | malE ← / → malK | maltose transporter subunit/fused maltose transport subunit, ATP‑binding component of ABC superfamily/regulatory protein |
RA | 4,265,064 | C→A | 57.6% | intergenic (‑95/‑335) | yjcB ← / → yjcC | putative inner membrane protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,269,857 | C→A | 27.5% | intergenic (+101/‑51) | yjcD → / → yjcE | inner membrane putative guanine permease/putative cation/proton antiporter |
RA | 4,273,868 | C→A | 20.7% | M321I (ATG→ATT) | actP ← | acetate transporter |
RA | 4,274,926 | A→C | 64.5% | I72M (ATT→ATG) | yjcH ← | DUF485 family inner membrane protein |
RA | 4,277,897 | T→A | 5.1% | L69Q (CTG→CAG) | nrfA → | nitrite reductase, formate‑dependent, cytochrome |
RA | 4,285,892 | A→G | 7.4% | intergenic (+170/+361) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,285,893 | A→C | 7.0% | intergenic (+171/+360) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,286,083 | T→C | 5.9% | intergenic (+361/+170) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,286,717 | T→A | 8.1% | I76F (ATC→TTC) | yjcO ← | Sel1 family TPR‑like repeat protein |
RA | 4,290,080 | G→T | 68.7% | I256I (ATC→ATA) | mdtP ← | outer membrane factor of efflux pump |
RA | 4,294,402 | C→T | 16.8% | intergenic (‑182/+27) | ytcA ← / ← yjcS | putative inner membrane DUF1656 family protein; efflux pump associated/metallo‑beta‑lactamase superfamily protein |
RA | 4,297,846 | C→A | 91.9% | M150I (ATG→ATT) | alsE ← | allulose‑6‑phosphate 3‑epimerase |
RA | 4,299,960 | G→A | 19.7% | R280W (CGG→TGG) | alsA ← | fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components |
RA | 4,300,732 | C→T | 23.5% | K22K (AAG→AAA) | alsA ← | fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components |
RA | 4,303,614 | T→A | 70.4% | *150R (TGA→AGA) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
RA | 4,308,595 | C→A | 17.6% | E277* (GAG→TAG) | phnJ ← | carbon‑phosphorus lyase, SAM‑dependent |
RA | 4,317,035 | A→T | 22.9% | E28D (GAA→GAT) | crfC → | clamp‑binding sister replication fork colocalization protein, dynamin‑related |
RA | 4,323,686 | C→A | 21.6% | D28Y (GAT→TAT) | basR ← | response regulator in two‑component regulatory system with BasS |
RA | 4,341,023 | A→T | 47.6% | Y153N (TAC→AAC) | dcuS ← | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
RA | 4,348,101 | C→A | 24.6% | D112Y (GAT→TAT) | cadA ← | lysine decarboxylase, acid‑inducible |
RA | 4,354,610 | A→T | 36.3% | W84R (TGG→AGG) | dsbD ← | fused thiol:disulfide interchange protein: activator of DsbC/conserved protein |
RA | 4,381,381 | T→A | 24.8% | intergenic (‑55/‑40) | rsgA ← / → orn | ribosome small subunit‑dependent GTPase A/oligoribonuclease |
RA | 4,382,270 | C→A | 5.7% | intergenic (+18/‑19) | glyV → / → glyX | tRNA‑Gly/tRNA‑Gly |
RA | 4,382,314 | A→T | 18.2% | noncoding (26/76 nt) | glyX → | tRNA‑Gly |
RA | 4,383,389 | G→T | 19.5% | R166S (CGC→AGC) | queG ← | epoxyqueuosine reductase, cobalamine‑stimulated; queosine biosynthesis |
RA | 4,388,902 | G→T | 71.7% | A558A (GCG→GCT) | mutL → | methyl‑directed mismatch repair protein |
RA | 4,396,598 | A→T | 63.2% | E43V (GAA→GTA) | rnr → | exoribonuclease R, RNase R |
RA | 4,396,975 | G→T | 19.7% | D169Y (GAC→TAC) | rnr → | exoribonuclease R, RNase R |
RA | 4,400,254 | C→A | 19.7% | S102* (TCG→TAG) | yjfI → | DUF2170 family protein |
RA | 4,417,551 | A→C | 66.2% | pseudogene (41/402 nt) | ytfA → | pseudogene, related to transcriptional regulators |
RA | 4,424,241 | T→G | 23.3% | A104A (GCT→GCG) | ytfH → | DUF24 family HxlR‑type putative transcriptional regulator |
RA | 4,458,254 | T→A | 70.6% | V271V (GTT→GTA) | mgtA → | magnesium transporter |
RA | 4,458,609 | G→T | 71.9% | D390Y (GAT→TAT) | mgtA → | magnesium transporter |
RA | 4,458,688 | T→A | 18.9% | L416Q (CTG→CAG) | mgtA → | magnesium transporter |
RA | 4,466,283 | A→T | 28.1% | N344Y (AAC→TAC) | yjgL → | uncharacterized protein |
RA | 4,468,165 | A→G | 70.7% | intergenic (‑37/‑125) | argI ← / → rraB | ornithine carbamoyltransferase 1/protein inhibitor of RNase E |
RA | 4,469,550 | G→A | 70.8% | A2T (GCT→ACT) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,017 | G→A | 65.6% | M157I (ATG→ATA) | yjgN → | DUF898 family inner membrane protein |
RA | 4,475,053 | A→T | 5.5% | V239D (GTC→GAC) | pepA ← | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
RA | 4,481,566 | G→T | 8.7% | V259V (GTC→GTA) | idnT ← | L‑idonate and D‑gluconate transporter |
RA | 4,487,951 | C→A | 23.7% | intergenic (+194/‑138) | intB → / → insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
RA | 4,495,560 | A→T | 50.0% | N153Y (AAC→TAC) | yjhC → | putative oxidoreductase |
RA | 4,500,728 | C→A | 23.8% | E183* (GAA→TAA) | fecE ← | iron‑dicitrate transporter subunit |
RA | 4,506,430 | A→T | 19.0% | L22Q (CTG→CAG) | fecA ← | ferric citrate outer membrane transporter |
RA | 4,510,428 | G→T | 20.4% | intergenic (‑287/+60) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
RA | 4,512,693 | T→A | 80.2% | K407* (AAG→TAG) | yjhG ← | putative dehydratase |
RA | 4,512,731 | A→C | 6.4% | L394R (CTC→CGC) | yjhG ← | putative dehydratase |
RA | 4,520,215 | T→A | 33.2% | N46Y (AAC→TAC) | sgcB ← | putative enzyme IIB component of PTS |
RA | 4,524,046 | C→A | 27.5% | intergenic (‑176/+201) | yjhX ← / ← yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
RA | 4,524,111 | A→T | 26.9% | intergenic (‑241/+136) | yjhX ← / ← yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
RA | 4,525,234 | G→A | 72.5% | pseudogene (415/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
RA | 4,526,511 | G→A | 21.6% | H301Y (CAT→TAT) | nanS ← | 9‑O‑acetyl N‑acetylneuraminic acid esterase |
RA | 4,529,829 | T→C | 22.0% | intergenic (‑511/‑945) | nanC ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,531,143 | A→T | 68.5% | I124F (ATT→TTT) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,555,156 | G→T | 60.0% | A171E (GCG→GAG) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
RA | 4,562,043 | C→A | 73.8% | intergenic (+311/‑188) | yjiS → / → yjiT | DUF1127 family protein/pseudogene |
RA | 4,562,157 | C→T | 6.4% | intergenic (+425/‑74) | yjiS → / → yjiT | DUF1127 family protein/pseudogene |
RA | 4,577,795 | C→A | 18.4% | T296T (ACG→ACT) | yjiA ← | GTP‑binding protein, putative GTPase |
RA | 4,579,917 | C→A | 21.6% | A394S (GCG→TCG) | yjiY ← | putative transporter |
RA | 4,584,381 | G→T | 64.6% | I53I (ATC→ATA) | yjjL ← | L‑galactonate transporter |
RA | 4,584,388 | G→A | 22.1% | A51V (GCG→GTG) | yjjL ← | L‑galactonate transporter |
RA | 4,585,338 | A→T | 56.0% | S111T (TCT→ACT) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,595,116 | G→T | 28.2% | P122Q (CCG→CAG) | fhuF ← | ferric iron reductase involved in ferric hydroximate transport |
RA | 4,603,125 | A→C | 8.9% | T300P (ACG→CCG) | yjjU → | putative patatin‑like family phospholipase |
RA | 4,604,195 | A→G | 5.5% | intergenic (+118/+302) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
RA | 4,617,129 | G→T | 18.0% | intergenic (+18/‑3) | radA → / → nadR | DNA repair protein/trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
RA | 4,625,288 | T→C | 59.3% | intergenic (‑161/‑50) | rob ← / → creA | right oriC‑binding transcriptional activator, AraC family/putative periplasmic protein |
RA | 4,626,111 | T→A | 20.7% | I96I (ATT→ATA) | creB → | response regulator in two‑component regulatory system with CreC |
RA | 4,629,622 | C→A | 18.0% | A168S (GCC→TCC) | arcA ← | response regulator in two‑component regulatory system with ArcB or CpxA |
RA | 4,629,649 | A→T | 42.7% | Y159N (TAC→AAC) | arcA ← | response regulator in two‑component regulatory system with ArcB or CpxA |
RA | 4,631,331 | A→T | 19.4% | A191A (GCA→GCT) | yjtD → | putative methyltransferase |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP009273 | 373877 | 375076 | 1200 | 113 [112] | [109] 116 | frmA–[frmR] | frmA,[frmR] |
* | * | ÷ | CP009273 | 4100635 | 4101493 | 859 | 119 [112] | [111] 114 | tpiA | tpiA |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 360104 = | 220 (0.820) | 163 (0.610) | 98/278 | NT | 42.6% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
* | ? | CP009273 | = 360278 | NA (NA) | 11006 (43.600) +TTAATTAA |
195/262 | NT | 97.3% | intergenic (‑212/+383) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 361823 | 319 (1.190) | coding (831/834 nt) | mhpR | mhp operon transcriptional activator | |||||
* | ? | CP009273 | 360652 = | 331 (1.240) | 10435 (58.410) +46 bp |
186/186 | NT | 98.3% | intergenic (‑586/+9) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 1317577 | 201 (0.750) | coding (101/882 nt) | yciV | PHP domain protein | |||||
* | ? | CP009273 | 376716 = | NA (NA) | 218 (0.810) | 121/278 | NT | 89.7% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
? | CP009273 | 566411 = | 25 (0.090) | coding (63/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | = 378046 | NA (NA) | 207 (0.770) | 97/278 | NT | 89.2% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
? | CP009273 | = 566415 | 25 (0.090) | coding (67/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | 776825 = | 170 (0.630) | 21 (0.080) +G |
11/276 | NT | 10.8% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
? | CP009273 | = 2514488 | 181 (0.680) | noncoding (216/1345 nt) | IS186 | repeat region | |||||
* | ? | CP009273 | 1203246 = | 76 (0.280) | 124 (0.520) | 72/246 | NT | 67.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | 1205075 = | 51 (0.220) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 1203261 | 78 (0.290) | 236 (1.000) | 115/246 | NT | 79.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | = 1205058 | 51 (0.220) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | 1635219 = | 50 (0.190) | 140 (0.530) | 91/274 | NT | 73.7% | intergenic (‑377/+377) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
* | ? | CP009273 | = 1635223 | 48 (0.180) | 133 (0.500) | 87/278 | NT | 73.5% | intergenic (‑381/+373) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 1645805 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
* | ? | CP009273 | 2989720 = | NA (NA) | 11 (0.040) | 10/276 | NT | 5.2% | noncoding (1331/1331 nt) | IS2 | repeat region |
? | CP009273 | 3271002 = | 202 (0.760) | coding (307/465 nt) | yhaV | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system | |||||
* | ? | CP009273 | 3179455 = | NA (NA) | 15 (0.060) | 12/278 | NT | 6.9% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
? | CP009273 | = 3271006 | 203 (0.760) | coding (311/465 nt) | yhaV | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system | |||||
* | ? | CP009273 | 3904961 = | 200 (0.750) | 18 (0.070) | 11/276 | NT | 8.3% | intergenic (‑76/+238) | pstS/glmS | periplasmic phosphate binding protein, high‑affinity/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
? | CP009273 | = 4489327 | NA (NA) | intergenic (+10/+83) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
* | ? | CP009273 | = 3904966 | 200 (0.750) | 13 (0.050) | 10/278 | NT | 6.1% | intergenic (‑81/+233) | pstS/glmS | periplasmic phosphate binding protein, high‑affinity/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
? | CP009273 | 4487998 = | NA (NA) | intergenic (+241/‑91) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |