mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 66,706 | T→C | 55.6% | intergenic (‑174/‑168) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 66,726 | T→C | 56.0% | intergenic (‑194/‑148) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 104,041 | G→T | 11.7% | intergenic (+80/‑151) | lpxC → / → secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| RA | 417,885 | T→G | 11.6% | intergenic (+70/‑89) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| RA | 692,035 | A→T | 5.0% | noncoding (38/75 nt) | glnV ← | tRNA‑Gln |
| RA | 692,040 | G→A | 7.1% | noncoding (33/75 nt) | glnV ← | tRNA‑Gln |
| RA | 692,043 | T→A | 8.2% | noncoding (30/75 nt) | glnV ← | tRNA‑Gln |
| RA | 692,358 | T→A | 5.3% | noncoding (38/75 nt) | glnU ← | tRNA‑Gln |
| RA | 802,799 | C→G | 8.7% | intergenic (‑62/+90) | ybhC ← / ← ybhB | acyl‑CoA thioesterase, lipoprotein/kinase inhibitor homolog, UPF0098 family |
| RA | 931,010 | A→T | 6.0% | Q777H (CAA→CAT) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 999,598 | A→C | 8.9% | T66P (ACG→CCG) | ycbF → | putative periplasmic pilin chaperone |
| RA | 1,282,421 | A→C | 6.0% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,460,356 | T→C | 11.0% | pseudogene (708/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,359 | A→G | 8.8% | pseudogene (711/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,593 | C→G | 7.2% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,546,448 | C→A | 6.9% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,702,966 | T→A | 9.1% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,023 | C→A | 15.8% | V616V (GTC→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,062 | T→A | 15.8% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,158 | A→C | 18.4% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,251 | A→C | 5.1% | A692A (GCA→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,295 | T→A | 10.6% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 2,514,509 | G→T | 6.3% | intergenic (+24/‑23) | valU → / → valY | tRNA‑Val/tRNA‑Val |
| RA | 2,711,673 | A→C | 8.6% | V72G (GTT→GGT) | yfiF ← | putative methyltransferase |
| RA | 2,762,276 | C→T | 14.6% | L85L (CTG→TTG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,278 | G→A | 14.7% | L85L (CTG→CTA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,281 | C→T | 11.5% | R86R (CGC→CGT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,284 | A→T | 10.9% | L87L (CTA→CTT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,287 | T→C | 10.8% | R88R (CGT→CGC) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,288 | C→A | 10.5% | R89R (CGG→AGG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,293 | G→A | 10.3% | E90E (GAG→GAA) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,299 | A→T | 10.1% | Q92H (CAA→CAT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,304 | C→A | 10.2% | T94N (ACC→AAC) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,308 | T→G | 10.4% | G95G (GGT→GGG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,309 | A→C | 10.6% | K96Q (AAA→CAA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,311 | A→G | 10.4% | K96K (AAA→AAG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,312 | C→G | 10.2% | Q97E (CAG→GAG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,314 | G→A | 10.3% | Q97Q (CAG→CAA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,320 | G→T | 9.6% | P99P (CCG→CCT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 3,227,068 | A→C | 7.5% | intergenic (+26/+19) | fadH → / ← higA | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked/antitoxinof the HigB‑HigA toxin‑antitoxin system |
| RA | 3,263,441 | A→C | 7.0% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,324,911 | T→G | 8.9% | E68A (GAG→GCG) | obgE ← | GTPase involved in cell partioning and DNA repair |
| RA | 3,462,400 | A→G | 5.1% | S271S (AGT→AGC) | chiA ← | periplasmic endochitinase |
| RA | 3,462,438 | C→A | 6.1% | A259S (GCA→TCA) | chiA ← | periplasmic endochitinase |
| RA | 3,462,439 | C→A | 6.1% | A258A (GCG→GCT) | chiA ← | periplasmic endochitinase |
| RA | 3,985,890 | A→G | 94.3% | N460D (AAC→GAC) | cyaA → | adenylate cyclase |
| RA | 4,106,955 | C→T | 100% | A66T (GCG→ACG) | glpK ← | glycerol kinase |
| RA | 4,264,190 | C→G | 5.4% | T46T (ACC→ACG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,193 | C→G | 5.6% | G47G (GGC→GGG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,200 | A→C | 6.0% | K50Q (AAA→CAA) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,201 | A→G | 6.0% | K50R (AAA→AGA) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,202 | A→G | 6.0% | K50K (AAA→AAG) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,205 | A→G | 5.7% | E51E (GAA→GAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,211 | T→A | 5.6% | T53T (ACT→ACA) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,220 | C→T | 11.6% | H56H (CAC→CAT) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,226 | T→G | 14.9% | V58V (GTT→GTG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,241 | A→G | 17.4% | K63K (AAA→AAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,244 | G→C | 14.2% | L64L (CTG→CTC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,247 | A→G | 14.2% | A65A (GCA→GCG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,256 | G→A | 16.3% | A68A (GCG→GCA) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,257 | A→G | 16.3% | S69G (AGC→GGC) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,259 | C→T | 16.3% | S69S (AGC→AGT) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,264 | A→G | 15.8% | Y71C (TAT→TGT) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,271 | T→C | 11.7% | R73R (CGT→CGC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,274 | A→G | 10.3% | K74K (AAA→AAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,277 | T→C | 9.2% | G75G (GGT→GGC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,278 | T→G | 9.1% | S76A (TCT→GCT) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,280 | T→G | 8.8% | S76S (TCT→TCG) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,286 | T→C | 9.3% | V78V (GTT→GTC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,289 | T→C | 8.6% | Y79Y (TAT→TAC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,382,371 | G→T | 6.5% | intergenic (+7/‑29) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| RA | 4,382,384 | G→T | 6.4% | intergenic (+20/‑16) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| RA | 4,595,993 | T→A | 12.2% | intergenic (‑11/+24) | leuV ← / ← leuP | tRNA‑Leu/tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 246569 | 247223 | 655 | 134 [127] | [130] 134 | lafU | pseudogene, lateral flagellar motor protein fragment |
| * | * | ÷ | CP009273 | 2597321 | 2598078 | 758 | 134 [123] | [132] 165 | hyfC | hydrogenase 4, membrane subunit |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 318 (0.760) | 19 (0.060) | 11/92 | NT | 5.4% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 400 (1.170) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
| * | ? | CP009273 | = 20197 | NA (NA) | 4 (0.010) | 3/100 | NT | NA | noncoding (367/768 nt) | IS1 | repeat region |
| ? | CP009273 | = 275301 | NA (NA) | noncoding (341/768 nt) | IS1 | repeat region | |||||
| * | ? | CP009273 | = 64557 | 324 (0.780) | 18 (0.050) | 10/94 | NT | 5.6% | coding (1224/2352 nt) | polB | DNA polymerase II |
| ? | CP009273 | = 64577 | 332 (0.950) | coding (1204/2352 nt) | polB | DNA polymerase II | |||||
| * | ? | CP009273 | 66560 = | 298 (0.710) | 277 (1.090) +22 bp |
36/68 | NT | 53.3% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 502 (1.200) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | 138464 = | NA (NA) | 3 (0.010) | 3/94 | NT | NA | intergenic (+10/+31) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase |
| ? | CP009273 | 138487 = | NA (NA) | intergenic (+33/+8) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase | |||||
| * | ? | CP009273 | = 173463 | NA (NA) | 6 (0.020) | 4/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 220637 = | NA (NA) | 3 (0.010) | 3/106 | NT | NA | noncoding (380/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 220658 = | NA (NA) | noncoding (401/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 221943 = | NA (NA) | 65 (0.190) | 14/94 | NT | NA | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | CP009273 | 221964 = | NA (NA) | intergenic (+20/‑23) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | CP009273 | 222376 = | NA (NA) | 7 (0.020) | 4/98 | NT | NA | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 222394 = | NA (NA) | noncoding (149/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 232154 | 242 (0.580) | 15 (0.040) | 5/92 | NT | 6.5% | coding (336/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| ? | CP009273 | = 232160 | 230 (0.670) | coding (330/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids | |||||
| * | ? | CP009273 | 248296 = | 178 (0.430) | 23 (0.060) | 8/96 | NT | 10.5% | coding (912/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | 248360 = | 240 (0.670) | coding (976/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | = 248303 | 151 (0.360) | 11 (0.030) | 6/96 | NT | 5.6% | coding (919/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | = 248351 | 240 (0.670) | coding (967/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | = 353255 | NA (NA) | 8 (0.020) | 6/98 | NT | NA | noncoding (61/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 353266 | NA (NA) | noncoding (72/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 360070 = | 335 (0.800) | 115 (0.370) +CTGATCAGTGAATT |
15/84 | NT | 30.1% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 378 (0.910) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 360096 | 345 (0.830) | 361 (0.880) | 22/110 | NT | 47.0% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 475 (1.160) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
| * | ? | CP009273 | 360104 = | 337 (0.810) | 515 (1.230) | 70/112 | NT | 60.4% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 394482 | NA (NA) | 13 (0.040) | 6/98 | NT | NA | coding (308/309 nt) | yaiY | DUF2755 family inner membrane protein |
| ? | CP009273 | = 394503 | NA (NA) | coding (287/309 nt) | yaiY | DUF2755 family inner membrane protein | |||||
| * | ? | CP009273 | 399208 = | 205 (0.490) | 10 (0.030) | 6/94 | NT | 5.7% | coding (50/1116 nt) | yaiC | diguanylate cyclase, cellulose regualtor |
| ? | CP009273 | 399297 = | 161 (0.460) | coding (139/1116 nt) | yaiC | diguanylate cyclase, cellulose regualtor | |||||
| * | ? | CP009273 | = 410282 | 312 (0.750) | 31 (0.080) | 12/98 | NT | 9.5% | coding (928/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent |
| ? | CP009273 | = 410288 | 315 (0.860) | coding (922/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent | |||||
| * | ? | CP009273 | = 426562 | NA (NA) | 5 (0.010) | 3/90 | NT | NA | intergenic (+154/+23) | yajD/tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| ? | CP009273 | = 426567 | NA (NA) | intergenic (+159/+18) | yajD/tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K | |||||
| * | ? | CP009273 | = 438477 | NA (NA) | 7 (0.020) | 7/88 | NT | NA | noncoding (4/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 438479 | NA (NA) | noncoding (6/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 442673 = | 388 (0.930) | 28 (0.080) | 9/90 | NT | 6.9% | coding (489/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | 442734 = | 441 (1.320) | coding (428/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | = 442683 | 374 (0.900) | 25 (0.070) | 12/90 | NT | 6.3% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 441 (1.320) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | 519440 = | 340 (0.820) | 18 (0.050) | 6/96 | NT | 5.1% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 379 (1.060) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 521461 | NA (NA) | 4 (0.010) | 3/102 | NT | 100% | coding (2745/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 521483 | 0 (0.000) | coding (2767/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 576705 = | NA (NA) | 4 (0.010) | 4/98 | NT | NA | coding (416/546 nt) | nohD | DLP12 prophage; DNA packaging protein |
| ? | CP009273 | 576725 = | NA (NA) | coding (436/546 nt) | nohD | DLP12 prophage; DNA packaging protein | |||||
| * | ? | CP009273 | = 603521 | 3 (0.010) | 6 (0.020) | 4/94 | NT | 70.4% | coding (1/1113 nt) | insL1 | IS186 transposase |
| ? | CP009273 | = 603589 | NA (NA) | coding (69/1113 nt) | insL1 | IS186 transposase | |||||
| * | ? | CP009273 | = 610426 | 163 (0.390) | 19 (0.050) | 6/96 | NT | 11.1% | coding (814/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent |
| ? | CP009273 | = 610453 | 166 (0.460) | coding (841/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent | |||||
| * | ? | CP009273 | 691855 = | 313 (0.750) | 38 (0.100) +TAATG |
3/102 | NT | 10.9% | intergenic (+123/+31) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| ? | CP009273 | 691998 = | 369 (0.880) | noncoding (75/75 nt) | glnV | tRNA‑Gln | |||||
| * | ? | CP009273 | 699831 = | 339 (0.810) | 23 (0.060) | 8/96 | NT | 8.4% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 209 (0.580) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
| * | ? | CP009273 | = 711204 | 209 (0.500) | 12 (0.030) | 8/104 | NT | 6.0% | coding (337/495 nt) | ybfP | lipoprotein |
| ? | CP009273 | = 711218 | 179 (0.460) | coding (351/495 nt) | ybfP | lipoprotein | |||||
| * | ? | CP009273 | 719576 = | 271 (0.650) | 10 (0.030) | 8/94 | NT | 5.3% | coding (295/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| ? | CP009273 | 719613 = | 131 (0.370) | coding (258/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein | |||||
| * | ? | CP009273 | = 725679 | NA (NA) | 4 (0.010) | 4/100 | NT | NA | coding (641/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725702 | NA (NA) | coding (664/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 725724 | NA (NA) | 20 (0.060) | 9/94 | NT | NA | coding (686/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725738 | NA (NA) | coding (700/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 776472 | 550 (1.320) | 78 (0.280) | 8/76 | NT | 27.3% | intergenic (+98/‑52) | lysW/valZ | tRNA‑Lys/tRNA‑Val |
| ? | CP009273 | 2514688 = | 43 (0.150) | noncoding (416/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | = 776704 | 486 (1.170) | 65 (0.160) +AAC |
4/106 | NT | 12.4% | intergenic (+26/‑121) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | = 777108 | NA (NA) | noncoding (76/76 nt) | lysQ | tRNA‑Lys | |||||
| * | ? | CP009273 | = 777093 | 90 (0.220) | 69 (0.190) +TTTGAGT |
3/98 | NT | 46.7% | noncoding (61/76 nt) | lysQ | tRNA‑Lys |
| ? | CP009273 | = 2514886 | NA (NA) | noncoding (614/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | = 831686 | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 859744 = | NA (NA) | 11 (0.030) | 7/92 | NT | NA | coding (647/663 nt) | fsaA | fructose‑6‑phosphate aldolase 1 |
| ? | CP009273 | 859774 = | NA (NA) | intergenic (+14/+62) | fsaA/moeB | fructose‑6‑phosphate aldolase 1/molybdopterin synthase sulfurylase | |||||
| * | ? | CP009273 | = 902734 | 177 (0.420) | 11 (0.030) | 5/98 | NT | 6.4% | coding (1005/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | CP009273 | = 902785 | 168 (0.460) | coding (954/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | CP009273 | 910536 = | NA (NA) | 15 (0.040) | 8/92 | NT | 10.9% | intergenic (‑223/+272) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | 910538 = | 150 (0.360) | intergenic (‑225/+270) | ybjE/aqpZ | putative transporter/aquaporin Z | |||||
| * | ? | CP009273 | 910549 = | 93 (0.220) | 6 (0.020) | 3/98 | NT | 8.2% | intergenic (‑236/+259) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | 910582 = | 53 (0.150) | intergenic (‑269/+226) | ybjE/aqpZ | putative transporter/aquaporin Z | |||||
| * | ? | CP009273 | 964816 = | 137 (0.330) | 22 (0.060) | 10/94 | NT | 14.7% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 141 (0.400) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
| * | ? | CP009273 | 1070341 = | NA (NA) | 10 (0.030) | 3/94 | NT | NA | noncoding (1/28 nt) | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1070369 = | NA (NA) | intergenic (+33/+7) | rutR/putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase | |||||
| * | ? | CP009273 | = 1092557 | NA (NA) | 37 (0.100) | 10/96 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092561 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1092949 = | NA (NA) | 19 (0.050) | 6/100 | NT | 22.1% | intergenic (+664/+72) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093045 = | 75 (0.180) | noncoding (64/88 nt) | serX | tRNA‑Ser | |||||
| * | ? | CP009273 | 1101408 = | 163 (0.390) | 26 (0.070) | 7/94 | NT | 16.2% | coding (133/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| ? | CP009273 | 1101450 = | 133 (0.380) | coding (175/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit | |||||
| * | ? | CP009273 | = 1161581 | 194 (0.470) | 33 (0.080) +A |
15/110 | NT | 15.3% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 178 (0.430) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | = 1161584 | 203 (0.490) | 10 (0.020) | 8/108 | NT | 5.1% | coding (44/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162080 = | 178 (0.440) | coding (540/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | 1203246 = | 154 (0.370) | 206 (0.690) | 45/80 | NT | 70.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 59 (0.200) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 177 (0.420) | 215 (0.720) | 38/80 | NT | 69.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 59 (0.200) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1209039 = | 412 (0.990) | 21 (0.060) | 10/92 | NT | 6.7% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 244 (0.710) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
| * | ? | CP009273 | 1228601 = | 391 (0.940) | 18 (0.050) | 6/94 | NT | 5.7% | intergenic (‑115/+31) | dsbB/nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| ? | CP009273 | 1228623 = | 266 (0.760) | intergenic (‑137/+9) | dsbB/nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter | |||||
| * | ? | CP009273 | 1238033 = | 513 (1.230) | 15 (0.050) | 8/76 | NT | 5.1% | coding (504/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | CP009273 | 1238051 = | 206 (0.730) | coding (486/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | CP009273 | 1242300 = | 559 (1.340) | 1604 (4.060) | 80/106 | NT | 76.4% | coding (533/1698 nt) | treA | periplasmic trehalase |
| ? | CP009273 | = 1292972 | 460 (1.170) | coding (606/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase | |||||
| * | ? | CP009273 | 1264549 = | NA (NA) | 9 (0.030) | 6/94 | NT | NA | intergenic (+74/+75) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small |
| ? | CP009273 | 1264575 = | NA (NA) | intergenic (+100/+49) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small | |||||
| * | ? | CP009273 | 1264586 = | NA (NA) | 4 (0.010) | 4/100 | NT | 28.9% | intergenic (+111/+38) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small |
| ? | CP009273 | 1264610 = | 11 (0.030) | intergenic (+135/+14) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small | |||||
| * | ? | CP009273 | 1282050 = | NA (NA) | 9 (0.020) | 4/98 | NT | NA | noncoding (1/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 1282075 = | NA (NA) | noncoding (26/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 1314763 = | 262 (0.630) | 20 (0.060) | 7/94 | NT | 9.3% | coding (879/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| ? | CP009273 | 1314808 = | 171 (0.490) | coding (834/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase | |||||
| * | ? | CP009273 | = 1397112 | 153 (0.370) | 11 (0.030) | 5/96 | NT | 5.1% | noncoding (1069/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 1397156 | 275 (0.770) | noncoding (1113/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 1505831 = | 318 (0.760) | 18 (0.050) | 7/94 | NT | 6.3% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 265 (0.760) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
| * | ? | CP009273 | 1641311 = | 391 (0.940) | 17 (0.050) | 8/90 | NT | 5.4% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 276 (0.820) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1823121 = | 198 (0.470) | 10 (0.030) | 6/94 | NT | 5.5% | coding (871/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | 1823160 = | 178 (0.510) | coding (832/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | CP009273 | = 1823129 | 188 (0.450) | 9 (0.030) | 8/94 | NT | 5.1% | coding (863/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | = 1823150 | 178 (0.510) | coding (842/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | CP009273 | = 1870380 | 289 (0.690) | 21 (0.060) | 7/94 | NT | 7.1% | coding (451/1182 nt) | yeaN | putative transporter |
| ? | CP009273 | = 1870397 | 303 (0.870) | coding (468/1182 nt) | yeaN | putative transporter | |||||
| * | ? | CP009273 | = 1871532 | 308 (0.740) | 15 (0.040) | 6/96 | NT | 5.8% | intergenic (+19/+3) | yeaO/yoaF | DUF488 family protein/DUF333 family outer membrane lipoprotein |
| ? | CP009273 | = 1871547 | 219 (0.610) | coding (243/255 nt) | yoaF | DUF333 family outer membrane lipoprotein | |||||
| * | ? | CP009273 | = 1948765 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (80/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1948776 | NA (NA) | noncoding (91/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 2006338 = | 369 (0.880) | 17 (0.050) | 9/92 | NT | 6.4% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 196 (0.570) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
| * | ? | CP009273 | = 2145164 | NA (NA) | 10 (0.030) | 7/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2159832 = | 342 (0.820) | 18 (0.050) | 6/94 | NT | 6.0% | coding (684/1362 nt) | yegQ | putative peptidase |
| ? | CP009273 | 2159891 = | 280 (0.800) | coding (743/1362 nt) | yegQ | putative peptidase | |||||
| * | ? | CP009273 | = 2191253 | 192 (0.460) | 13 (0.040) | 7/90 | NT | 6.6% | pseudogene (1301/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| ? | CP009273 | = 2191263 | 215 (0.640) | pseudogene (1311/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function | |||||
| * | ? | CP009273 | 2230106 = | 273 (0.650) | 17 (0.050) | 7/92 | NT | 8.5% | noncoding (94/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 2230138 = | 144 (0.420) | noncoding (126/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | CP009273 | 2269311 = | 303 (0.730) | 17 (0.050) | 9/96 | NT | 6.7% | coding (560/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | 2269347 = | 215 (0.600) | coding (596/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family | |||||
| * | ? | CP009273 | = 2333864 | NA (NA) | 4 (0.010) +TTATCCGG |
3/96 | NT | NA | noncoding (73/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 4307765 = | NA (NA) | noncoding (32/83 nt) | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | = 2402276 | NA (NA) | 14 (0.040) | 8/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2436000 = | 247 (0.590) | 13 (0.040) | 7/94 | NT | 5.7% | coding (758/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | 2436103 = | 226 (0.650) | coding (861/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | = 2436008 | 301 (0.720) | 14 (0.040) | 7/94 | NT | 5.5% | coding (766/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | = 2436093 | 226 (0.650) | coding (851/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | = 2499292 | 338 (0.810) | 29 (0.080) | 16/98 | NT | 8.0% | coding (820/1086 nt) | ypdF | Xaa‑Pro aminopeptidase |
| ? | CP009273 | = 2499321 | 372 (1.020) | coding (791/1086 nt) | ypdF | Xaa‑Pro aminopeptidase | |||||
| * | ? | CP009273 | = 2502173 | 242 (0.580) | 11 (0.030) | 6/92 | NT | 5.6% | coding (733/966 nt) | glk | glucokinase |
| ? | CP009273 | = 2502211 | 175 (0.510) | coding (695/966 nt) | glk | glucokinase | |||||
| * | ? | CP009273 | = 2540715 | 218 (0.520) | 15 (0.040) | 4/94 | NT | 5.9% | coding (684/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| ? | CP009273 | = 2540730 | 297 (0.850) | coding (699/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system | |||||
| * | ? | CP009273 | 2590222 = | 340 (0.820) | 15 (0.040) | 7/90 | NT | 5.4% | intergenic (‑126/+42) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| ? | CP009273 | 2590249 = | 254 (0.760) | intergenic (‑153/+15) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase | |||||
| * | ? | CP009273 | = 2691481 | 388 (0.930) | 35 (0.090) | 13/100 | NT | 8.5% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 406 (1.090) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
| * | ? | CP009273 | 2694210 = | 283 (0.680) | 11 (0.030) | 6/90 | NT | 5.5% | coding (148/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 |
| ? | CP009273 | 2694239 = | 151 (0.450) | coding (119/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | CP009273 | 2747582 = | 360 (0.860) | 27 (0.080) | 8/94 | NT | 9.4% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 220 (0.630) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
| * | ? | CP009273 | = 2749471 | 396 (0.950) | 25 (0.070) | 6/90 | NT | 6.8% | intergenic (+734/‑47) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase |
| ? | CP009273 | = 2749488 | 364 (1.090) | intergenic (+751/‑30) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase | |||||
| * | ? | CP009273 | = 2787501 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2787742 = | 471 (1.130) | 51 (0.140) | 11/96 | NT | 12.5% | coding (131/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| ? | CP009273 | 2787778 = | 310 (0.870) | coding (167/1401 nt) | gabP | gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2791412 = | NA (NA) | 5 (0.010) | 3/100 | NT | NA | noncoding (1/30 nt) | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2791442 = | NA (NA) | intergenic (+39/+8) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated | |||||
| * | ? | CP009273 | 2845465 = | 225 (0.540) | 28 (0.080) | 7/96 | NT | 9.7% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 327 (0.910) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
| * | ? | CP009273 | 2925176 = | NA (NA) | 6 (0.020) | 5/92 | NT | NA | noncoding (1/30 nt) | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2925206 = | NA (NA) | intergenic (+37/+18) | ygdG/fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase | |||||
| * | ? | CP009273 | 2930783 = | NA (NA) | 8 (0.020) | 6/90 | NT | NA | intergenic (+65/‑14) | fucI/fucK | L‑fucose isomerase/L‑fuculokinase |
| ? | CP009273 | 2930811 = | NA (NA) | coding (15/1449 nt) | fucK | L‑fuculokinase | |||||
| * | ? | CP009273 | 3031308 = | 477 (1.140) | 24 (0.070) | 12/98 | NT | 6.5% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 275 (0.750) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
| * | ? | CP009273 | = 3054026 | NA (NA) | 4 (0.010) | 3/96 | NT | NA | noncoding (8/21 nt) | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3054031 | NA (NA) | noncoding (13/21 nt) | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 3202572 | 259 (0.620) | 17 (0.050) | 6/92 | NT | 8.8% | coding (1190/1464 nt) | ttdT | L‑tartrate/succinate antiporte |
| ? | CP009273 | = 3202615 | 140 (0.410) | coding (1233/1464 nt) | ttdT | L‑tartrate/succinate antiporte | |||||
| * | ? | CP009273 | 3215213 = | 246 (0.590) | 18 (0.050) | 7/96 | NT | 7.8% | coding (389/984 nt) | ebgR | transcriptional repressor |
| ? | CP009273 | 3215274 = | 213 (0.600) | coding (450/984 nt) | ebgR | transcriptional repressor | |||||
| * | ? | CP009273 | 3228020 = | NA (NA) | 10 (0.030) | 6/88 | NT | 7.8% | noncoding (24/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 3228063 = | 119 (0.360) | noncoding (67/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 3293574 = | 382 (0.920) | 15 (0.040) | 9/90 | NT | 5.3% | coding (250/303 nt) | yhbQ | GIY‑YIG nuclease superfamily protein |
| ? | CP009273 | 3293608 = | 231 (0.690) | coding (284/303 nt) | yhbQ | GIY‑YIG nuclease superfamily protein | |||||
| * | ? | CP009273 | 3323803 = | NA (NA) | 4 (0.010) +G |
3/110 | NT | NA | intergenic (+48/+138) | dacB/obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| ? | CP009273 | = 3734462 | NA (NA) | intergenic (+144/+7) | avtA/ysaA | valine‑pyruvate aminotransferase 1/putative hydrogenase, 4Fe‑4S ferredoxin‑type component | |||||
| * | ? | CP009273 | = 3348965 | 411 (0.990) | 25 (0.070) | 12/96 | NT | 6.6% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 352 (0.980) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | CP009273 | 3375198 = | 314 (0.750) | 25 (0.070) | 8/94 | NT | 9.4% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 217 (0.620) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | CP009273 | = 3462138 | 472 (1.130) | 27 (0.090) | 9/78 | NT | 6.1% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 504 (1.740) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
| * | ? | CP009273 | = 3487124 | NA (NA) | 16 (0.040) | 7/96 | NT | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3487134 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3509341 = | 638 (1.530) | 41 (0.120) | 8/94 | NT | 8.4% | intergenic (‑69/+38) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring |
| ? | CP009273 | 3509369 = | 355 (1.010) | intergenic (‑97/+10) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | 3556942 = | NA (NA) | 8 (0.020) | 5/98 | NT | NA | noncoding (1/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3556967 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 3613137 | NA (NA) | 8 (0.020) | 5/98 | NT | NA | coding (586/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613192 | NA (NA) | coding (641/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3613276 = | NA (NA) | 19 (0.050) | 10/106 | NT | NA | coding (725/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3613329 = | NA (NA) | coding (778/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3614731 = | NA (NA) | 8 (0.020) | 7/98 | NT | 100% | coding (2180/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3614737 = | 0 (0.000) | coding (2186/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3614762 = | NA (NA) | 3 (0.010) | 3/100 | NT | 100% | coding (2211/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3614767 = | 0 (0.000) | coding (2216/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3615349 = | NA (NA) | 9 (0.030) | 8/96 | NT | 100% | coding (2798/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3615372 = | 0 (0.000) | coding (2821/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3618995 | NA (NA) | 9 (0.030) | 6/92 | NT | NA | noncoding (47/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3619028 | NA (NA) | noncoding (80/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 3630213 | 314 (0.750) | 50 (0.160) | 22/84 | NT | 18.2% | coding (558/1203 nt) | yhiN | putative oxidoreductase |
| ? | CP009273 | = 3630199 | 214 (0.680) | coding (572/1203 nt) | yhiN | putative oxidoreductase | |||||
| * | ? | CP009273 | = 3669630 | NA (NA) | 7 (0.020) | 6/82 | NT | NA | noncoding (150/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | = 3669631 | NA (NA) | noncoding (151/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 3693271 | 256 (0.610) | 14 (0.040) | 7/94 | NT | 5.7% | intergenic (+18/+69) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small |
| ? | CP009273 | = 3693281 | 250 (0.710) | intergenic (+28/+59) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small | |||||
| * | ? | CP009273 | 3701734 = | NA (NA) | 8 (0.020) | 5/96 | NT | 6.1% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 143 (0.340) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3701786 | 115 (0.280) | 7 (0.020) | 5/88 | NT | 7.2% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | 3701943 = | 48 (0.120) | 3 (0.010) | 3/88 | NT | 5.5% | intergenic (‑878/+33) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701970 = | 65 (0.200) | intergenic (‑905/+6) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3808465 | NA (NA) | 4 (0.010) | 3/92 | NT | NA | noncoding (9/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3808469 | NA (NA) | noncoding (13/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3832491 = | 385 (0.920) | 17 (0.050) | 5/96 | NT | 6.5% | coding (884/924 nt) | yicL | EamA family inner membrane putative transporter |
| ? | CP009273 | 3832524 = | 160 (0.450) | coding (917/924 nt) | yicL | EamA family inner membrane putative transporter | |||||
| * | ? | CP009273 | 3847022 = | NA (NA) | 7 (0.020) | 4/88 | NT | NA | intergenic (+20/‑260) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| ? | CP009273 | 3847050 = | NA (NA) | intergenic (+48/‑232) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein | |||||
| * | ? | CP009273 | 3851553 = | 370 (0.890) | 29 (0.090) | 9/86 | NT | 10.9% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 191 (0.600) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | CP009273 | 3920778 = | 283 (0.680) | 30 (0.090) | 8/88 | NT | 10.4% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 297 (0.910) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | CP009273 | = 3935250 | NA (NA) | 114 (0.310) +AAGCTGT |
8/98 | NT | NA | noncoding (83/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4028968 | NA (NA) | noncoding (78/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 3999175 = | 361 (0.870) | 22 (0.060) | 11/96 | NT | 6.7% | intergenic (+84/‑49) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase |
| ? | CP009273 | 3999197 = | 303 (0.850) | intergenic (+106/‑27) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase | |||||
| * | ? | CP009273 | = 3999966 | 498 (1.190) | 25 (0.060) | 7/108 | NT | 5.5% | coding (743/1830 nt) | recQ | ATP‑dependent DNA helicase |
| ? | CP009273 | = 4000004 | 378 (0.940) | coding (781/1830 nt) | recQ | ATP‑dependent DNA helicase | |||||
| * | ? | CP009273 | = 4047497 | 275 (0.660) | 22 (0.060) | 10/94 | NT | 8.6% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 236 (0.670) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
| * | ? | CP009273 | = 4049082 | 319 (0.760) | 16 (0.040) | 12/96 | NT | 5.6% | coding (618/1050 nt) | glnL | sensory histidine kinase in two‑component regulatory system with GlnG |
| ? | CP009273 | = 4049111 | 262 (0.730) | coding (589/1050 nt) | glnL | sensory histidine kinase in two‑component regulatory system with GlnG | |||||
| * | ? | CP009273 | 4061067 = | 411 (0.990) | 25 (0.070) | 9/94 | NT | 7.8% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 246 (0.700) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
| * | ? | CP009273 | = 4127796 | NA (NA) | 5 (0.010) | 4/98 | NT | NA | noncoding (80/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4127807 | NA (NA) | noncoding (91/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 4156417 = | NA (NA) | 7 (0.020) | 4/112 | NT | NA | intergenic (+204/‑170) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| ? | CP009273 | 4197929 = | NA (NA) | intergenic (‑469/‑146) | purH/rrsE | fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | 4161825 = | NA (NA) | 6 (0.020) | 3/96 | NT | 100% | intergenic (+141/‑160) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | CP009273 | 4161830 = | 0 (0.000) | intergenic (+146/‑155) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | CP009273 | 4190073 = | 473 (1.130) | 54 (0.160) | 12/90 | NT | 12.5% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 375 (1.120) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | CP009273 | 4230085 = | NA (NA) | 5 (0.010) | 4/98 | NT | NA | noncoding (1/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4230118 = | NA (NA) | noncoding (34/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 4306574 = | 147 (0.350) | 7 (0.020) | 7/98 | NT | 5.5% | coding (462/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | CP009273 | 4306632 = | 114 (0.310) | coding (404/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||
| * | ? | CP009273 | = 4308345 | 458 (1.100) | 22 (0.060) | 8/94 | NT | 6.0% | coding (237/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| ? | CP009273 | = 4308403 | 302 (0.860) | coding (179/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein | |||||
| * | ? | CP009273 | 4311466 = | 440 (1.050) | 24 (0.070) | 10/94 | NT | 7.4% | coding (48/453 nt) | phnG | ribophosphonate triphosphate synthase subunit |
| ? | CP009273 | 4311493 = | 233 (0.670) | coding (21/453 nt) | phnG | ribophosphonate triphosphate synthase subunit | |||||
| * | ? | CP009273 | 4321833 = | NA (NA) | 3 (0.010) | 3/94 | NT | NA | noncoding (3/32 nt) | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4321864 = | NA (NA) | intergenic (+43/‑69) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator | |||||
| * | ? | CP009273 | 4328027 = | 238 (0.570) | 15 (0.040) | 7/96 | NT | 6.1% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 261 (0.730) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
| * | ? | CP009273 | = 4382210 | 124 (0.300) | 9 (0.030) | 7/96 | NT | 5.7% | noncoding (34/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382434 | 189 (0.530) | noncoding (35/76 nt) | glyY | tRNA‑Gly | |||||
| * | ? | CP009273 | 4501871 = | 236 (0.570) | 24 (0.070) | 8/92 | NT | 6.9% | coding (361/957 nt) | fecD | iron‑dicitrate transporter subunit |
| ? | CP009273 | 4501966 = | 453 (1.320) | coding (266/957 nt) | fecD | iron‑dicitrate transporter subunit | |||||
| * | ? | CP009273 | 4506708 = | 360 (0.860) | 16 (0.050) | 10/94 | NT | 5.4% | coding (827/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | CP009273 | 4506742 = | 263 (0.750) | coding (793/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | CP009273 | 4512275 = | 289 (0.690) | 25 (0.070) | 11/92 | NT | 8.0% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 338 (0.990) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | CP009273 | = 4548130 | 331 (0.790) | 14 (0.040) | 6/88 | NT | 5.2% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 254 (0.780) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | CP009273 | 4583141 = | NA (NA) | 8 (0.020) | 4/90 | NT | NA | intergenic (+12/+37) | tsr/yjjL | methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter |
| ? | CP009273 | 4583171 = | NA (NA) | intergenic (+42/+7) | tsr/yjjL | methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter | |||||