mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 66,706 | T→C | 67.8% | intergenic (‑174/‑168) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 66,726 | T→C | 68.4% | intergenic (‑194/‑148) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 691,928 | G→A | 5.7% | noncoding (33/75 nt) | glnX ← | tRNA‑Gln |
| RA | 691,931 | T→A | 6.6% | noncoding (30/75 nt) | glnX ← | tRNA‑Gln |
| RA | 692,040 | G→A | 5.3% | noncoding (33/75 nt) | glnV ← | tRNA‑Gln |
| RA | 692,043 | T→A | 6.9% | noncoding (30/75 nt) | glnV ← | tRNA‑Gln |
| RA | 802,799 | C→G | 11.1% | intergenic (‑62/+90) | ybhC ← / ← ybhB | acyl‑CoA thioesterase, lipoprotein/kinase inhibitor homolog, UPF0098 family |
| RA | 1,191,676 | C→T | 29.7% | H366H (CAC→CAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,191,688 | C→T | 22.2% | T370T (ACC→ACT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,191,701 | T→C | 14.0% | L375L (TTA→CTA) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,191,703 | A→G | 14.3% | L375L (TTA→TTG) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,282,812 | C→A | 5.8% | intergenic (‑28/+182) | tyrV ← / ← tyrT | tRNA‑Tyr/tRNA‑Tyr |
| RA | 1,460,356 | T→C | 9.8% | pseudogene (708/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,359 | A→G | 8.4% | pseudogene (711/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,593 | C→G | 8.7% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| JC | 1,503,120 | 20 bp→20 bp | NA | coding (183‑202/231 nt) | yncJ ← | uncharacterized protein |
| RA | 1,702,966 | T→A | 8.6% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,036 | G→C | 7.9% | A621P (GCC→CCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,044 | C→A | 8.5% | V623V (GTC→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,062 | T→A | 15.4% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,140 | C→A | 7.6% | V655V (GTC→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,146 | C→A | 5.4% | A657A (GCC→GCA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,158 | A→C | 14.8% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,187 | C→A | 6.1% | P671Q (CCG→CAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,295 | T→A | 7.7% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 2,554,355 | G→T | 10.2% | intergenic (+98/‑372) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,711,673 | A→C | 8.4% | V72G (GTT→GGT) | yfiF ← | putative methyltransferase |
| RA | 2,762,276 | C→T | 11.5% | L85L (CTG→TTG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,278 | G→A | 11.6% | L85L (CTG→CTA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,281 | C→T | 8.9% | R86R (CGC→CGT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,284 | A→T | 8.4% | L87L (CTA→CTT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,287 | T→C | 8.5% | R88R (CGT→CGC) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,288 | C→A | 8.4% | R89R (CGG→AGG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,293 | G→A | 8.2% | E90E (GAG→GAA) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,299 | A→T | 8.3% | Q92H (CAA→CAT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,304 | C→A | 8.3% | T94N (ACC→AAC) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,308 | T→G | 8.5% | G95G (GGT→GGG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,309 | A→C | 8.7% | K96Q (AAA→CAA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,311 | A→G | 8.8% | K96K (AAA→AAG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,312 | C→G | 8.4% | Q97E (CAG→GAG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,314 | G→A | 8.6% | Q97Q (CAG→CAA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,320 | G→T | 7.8% | P99P (CCG→CCT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 3,263,328 | A→C | 5.8% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,330 | G→T | 7.9% | intergenic (+369/+245) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,353 | G→T | 20.5% | intergenic (+392/+222) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,421 | C→A | 8.5% | intergenic (+460/+154) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,441 | A→C | 6.3% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,460 | C→T | 11.1% | intergenic (+499/+115) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,466 | G→T | 17.7% | intergenic (+505/+109) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,560 | G→T | 7.3% | intergenic (+599/+15) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,579 | G→T | 13.3% | noncoding (373/377 nt) | rnpB ← | RNase P, M1 RNA component |
| RA | 3,300,453 | T→G | 10.2% | N256T (AAC→ACC) | deaD ← | ATP‑dependent RNA helicase |
| RA | 3,300,458 | G→T | 6.8% | T254T (ACC→ACA) | deaD ← | ATP‑dependent RNA helicase |
| RA | 3,462,438 | C→A | 5.0% | A259S (GCA→TCA) | chiA ← | periplasmic endochitinase |
| RA | 3,774,505 | C→G | 6.7% | intergenic (+128/‑70) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,991,405 | A→C | 9.3% | P21P (CCA→CCC) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,991,416 | T→G | 7.8% | L25R (CTT→CGT) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,063,837 | A→T | 7.0% | intergenic (‑76/+38) | yihR ← / ← yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| RA | 4,176,299 | A→G | 12.5% | N341S (AAC→AGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,264,181 | T→C | 5.3% | D43D (GAT→GAC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,185 | G→C | 5.4% | A45P (GCG→CCG) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,186 | C→A | 5.5% | A45E (GCG→GAG) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,190 | C→G | 7.6% | T46T (ACC→ACG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,193 | C→G | 7.9% | G47G (GGC→GGG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,200 | A→C | 8.8% | K50Q (AAA→CAA) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,201 | A→G | 8.8% | K50R (AAA→AGA) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,202 | A→G | 8.8% | K50K (AAA→AAG) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,205 | A→G | 8.6% | E51E (GAA→GAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,211 | T→A | 8.3% | T53T (ACT→ACA) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,220 | C→T | 14.2% | H56H (CAC→CAT) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,226 | T→G | 18.7% | V58V (GTT→GTG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,241 | A→G | 17.3% | K63K (AAA→AAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,244 | G→C | 14.2% | L64L (CTG→CTC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,247 | A→G | 14.2% | A65A (GCA→GCG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,256 | G→A | 16.2% | A68A (GCG→GCA) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,257 | A→G | 16.2% | S69G (AGC→GGC) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,259 | C→T | 16.1% | S69S (AGC→AGT) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,264 | A→G | 15.5% | Y71C (TAT→TGT) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,271 | T→C | 11.5% | R73R (CGT→CGC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,274 | A→G | 9.9% | K74K (AAA→AAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,277 | T→C | 8.9% | G75G (GGT→GGC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,278 | T→G | 9.4% | S76A (TCT→GCT) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,280 | T→G | 8.9% | S76S (TCT→TCG) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,286 | T→C | 9.0% | V78V (GTT→GTC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,289 | T→C | 7.1% | Y79Y (TAT→TAC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,382,371 | G→T | 10.9% | intergenic (+7/‑29) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| RA | 4,382,385 | G→T | 9.6% | intergenic (+21/‑15) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| RA | 4,595,993 | T→A | 6.5% | intergenic (‑11/+24) | leuV ← / ← leuP | tRNA‑Leu/tRNA‑Leu |
| RA | 4,596,006 | A→T | 5.2% | intergenic (‑24/+11) | leuV ← / ← leuP | tRNA‑Leu/tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 246565 | 247227 | 663 | 144 [134] | [110] 188 | lafU | pseudogene, lateral flagellar motor protein fragment |
| * | * | ÷ | CP009273 | 2597319 | 2598085 | 767 | 175 [109] | [127] 140 | hyfC | hydrogenase 4, membrane subunit |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 320 (0.670) | 20 (0.050) | 12/92 | NT | 5.6% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 410 (1.050) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
| * | ? | CP009273 | = 15586 | NA (NA) | 6 (0.010) | 5/102 | NT | NA | noncoding (200/1345 nt) | IS186 | repeat region |
| ? | CP009273 | = 15595 | NA (NA) | noncoding (209/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | = 25775 | NA (NA) | 7 (0.020) | 4/96 | NT | NA | noncoding (66/86 nt) | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 3847093 | NA (NA) | noncoding (22/36 nt) | REP279 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP279 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 64557 | 326 (0.690) | 20 (0.050) | 8/94 | NT | 6.1% | coding (1224/2352 nt) | polB | DNA polymerase II |
| ? | CP009273 | = 64577 | 338 (0.850) | coding (1204/2352 nt) | polB | DNA polymerase II | |||||
| * | ? | CP009273 | 66560 = | 292 (0.610) | 468 (1.620) +22 bp |
39/68 | NT | 66.7% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 478 (1.010) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | 138464 = | NA (NA) | 7 (0.020) | 5/94 | NT | NA | intergenic (+10/+31) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase |
| ? | CP009273 | 138487 = | NA (NA) | intergenic (+33/+8) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase | |||||
| * | ? | CP009273 | 204614 = | 389 (0.820) | 16 (0.040) | 5/94 | NT | 5.0% | coding (3002/3483 nt) | dnaE | DNA polymerase III alpha subunit |
| ? | CP009273 | 204648 = | 277 (0.690) | coding (3036/3483 nt) | dnaE | DNA polymerase III alpha subunit | |||||
| * | ? | CP009273 | 220990 = | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (733/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 221189 = | NA (NA) | noncoding (932/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 221068 | NA (NA) | 7 (0.020) | 5/98 | NT | NA | noncoding (811/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 221102 | NA (NA) | noncoding (845/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 221943 = | NA (NA) | 60 (0.150) | 16/94 | NT | NA | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | CP009273 | 221964 = | NA (NA) | intergenic (+20/‑23) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | CP009273 | 224503 = | NA (NA) | 9 (0.020) | 7/98 | NT | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 224528 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 232154 | 282 (0.590) | 21 (0.050) | 6/92 | NT | 8.0% | coding (336/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| ? | CP009273 | = 232160 | 252 (0.650) | coding (330/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids | |||||
| * | ? | CP009273 | 248296 = | 176 (0.370) | 20 (0.050) | 8/96 | NT | 10.9% | coding (912/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | 248360 = | 177 (0.430) | coding (976/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | = 282361 | 259 (0.550) | 18 (0.050) | 9/92 | NT | 6.6% | coding (1256/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter |
| ? | CP009273 | = 282393 | 298 (0.760) | coding (1288/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter | |||||
| * | ? | CP009273 | = 311362 | NA (NA) | 3 (0.010) | 3/96 | NT | NA | coding (65/867 nt) | insF1 | IS3 transposase B |
| ? | CP009273 | = 311414 | NA (NA) | coding (117/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | 360070 = | 359 (0.760) | 234 (0.660) +CTGATCAGTGAATT |
20/84 | NT | 46.2% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 369 (0.780) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 360096 | 361 (0.760) | 576 (1.230) | 26/110 | NT | 57.2% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 506 (1.080) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
| * | ? | CP009273 | 360104 = | 338 (0.710) | 547 (1.150) | 64/112 | NT | 61.8% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 360168 = | NA (NA) | 39 (0.100) | 12/94 | NT | NA | intergenic (‑102/+493) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 360191 = | NA (NA) | intergenic (‑125/+470) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 370386 = | NA (NA) | 5 (0.010) | 4/98 | NT | NA | noncoding (1/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | 370416 = | NA (NA) | noncoding (31/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | CP009273 | 376748 = | NA (NA) | 26 (0.070) | 9/94 | NT | NA | intergenic (‑33/‑59) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | 376768 = | NA (NA) | intergenic (‑53/‑39) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | 377137 = | NA (NA) | 6 (0.020) | 6/94 | NT | NA | coding (331/366 nt) coding (8/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
| ? | CP009273 | 377209 = | NA (NA) | coding (80/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 410282 | 329 (0.690) | 30 (0.070) | 10/98 | NT | 9.0% | coding (928/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent |
| ? | CP009273 | = 410288 | 319 (0.770) | coding (922/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent | |||||
| * | ? | CP009273 | 442673 = | 370 (0.780) | 21 (0.060) | 12/90 | NT | 5.5% | coding (489/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | 442734 = | 422 (1.110) | coding (428/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | = 442683 | 373 (0.790) | 42 (0.110) | 15/90 | NT | 10.4% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 422 (1.110) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | = 521461 | NA (NA) | 5 (0.010) | 4/102 | NT | 100% | coding (2745/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 521483 | 0 (0.000) | coding (2767/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 577278 | 295 (0.620) | 16 (0.040) | 8/96 | NT | 6.0% | pseudogene (163/438 nt) | tfaD | pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| ? | CP009273 | = 1426905 | NA (NA) | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
| * | ? | CP009273 | = 610426 | 198 (0.420) | 22 (0.050) | 5/96 | NT | 10.6% | coding (814/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent |
| ? | CP009273 | = 610453 | 202 (0.500) | coding (841/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent | |||||
| * | ? | CP009273 | 699831 = | 380 (0.800) | 41 (0.100) | 9/96 | NT | 12.0% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 276 (0.680) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
| * | ? | CP009273 | = 725679 | NA (NA) | 6 (0.010) | 5/100 | NT | NA | coding (641/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725702 | NA (NA) | coding (664/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 725814 = | NA (NA) | 7 (0.020) | 6/96 | NT | NA | coding (776/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 725875 = | NA (NA) | coding (837/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 727594 = | NA (NA) | 3 (0.010) | 3/102 | NT | NA | coding (2556/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 727660 = | NA (NA) | coding (2622/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 728221 = | 0 (0.000) | 4 (0.010) | 4/104 | NT | 100% | coding (3183/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 730160 = | NA (NA) | pseudogene (572/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
| * | ? | CP009273 | 728285 = | NA (NA) | 10 (0.020) | 9/108 | NT | NA | coding (3247/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 728314 = | NA (NA) | coding (3276/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 772557 = | 181 (0.380) | 7 (0.020) | 5/98 | NT | 5.4% | coding (760/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex |
| ? | CP009273 | 772577 = | 89 (0.210) | coding (780/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex | |||||
| * | ? | CP009273 | = 831686 | NA (NA) | 6 (0.020) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 859744 = | NA (NA) | 6 (0.020) | 5/92 | NT | NA | coding (647/663 nt) | fsaA | fructose‑6‑phosphate aldolase 1 |
| ? | CP009273 | 859774 = | NA (NA) | intergenic (+14/+62) | fsaA/moeB | fructose‑6‑phosphate aldolase 1/molybdopterin synthase sulfurylase | |||||
| * | ? | CP009273 | = 902734 | 202 (0.430) | 14 (0.030) | 7/98 | NT | 7.0% | coding (1005/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | CP009273 | = 902785 | 197 (0.470) | coding (954/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | CP009273 | 964816 = | 139 (0.290) | 19 (0.050) | 7/94 | NT | 13.3% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 132 (0.330) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
| * | ? | CP009273 | 1070341 = | NA (NA) | 9 (0.020) | 6/94 | NT | NA | noncoding (1/28 nt) | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1070369 = | NA (NA) | intergenic (+33/+7) | rutR/putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase | |||||
| * | ? | CP009273 | = 1092557 | NA (NA) | 12 (0.030) +GC |
6/108 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092559 | NA (NA) | intergenic (+274/+462) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | = 1092557 | NA (NA) | 19 (0.050) | 8/96 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092561 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1101408 = | 166 (0.350) | 24 (0.060) | 8/94 | NT | 14.7% | coding (133/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| ? | CP009273 | 1101450 = | 139 (0.350) | coding (175/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit | |||||
| * | ? | CP009273 | 1132892 = | 323 (0.680) | 28 (0.080) | 17/86 | NT | 7.6% | coding (66/942 nt) | flgJ | flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase |
| ? | CP009273 | = 1146583 | 437 (1.200) | coding (458/735 nt) | fabG | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase | |||||
| * | ? | CP009273 | = 1161581 | 231 (0.490) | 27 (0.060) +G |
14/110 | NT | 10.9% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 218 (0.460) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | 1187529 = | 157 (0.330) | 9 (0.020) | 4/96 | NT | 5.6% | coding (559/642 nt) | hflD | putative lysogenization regulator |
| ? | CP009273 | 1187561 = | 168 (0.410) | coding (527/642 nt) | hflD | putative lysogenization regulator | |||||
| * | ? | CP009273 | 1203246 = | 234 (0.490) | 90 (0.270) | 26/80 | NT | 40.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 102 (0.300) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 257 (0.540) | 83 (0.240) | 30/80 | NT | 36.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 102 (0.300) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1209039 = | 578 (1.220) | 27 (0.070) | 11/92 | NT | 6.2% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 339 (0.870) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
| * | ? | CP009273 | 1238033 = | 568 (1.200) | 21 (0.070) | 16/76 | NT | 6.4% | coding (504/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | CP009273 | 1238051 = | 230 (0.710) | coding (486/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | CP009273 | 1240767 = | 351 (0.740) | 30 (0.070) | 16/96 | NT | 8.2% | coding (152/441 nt) | ycgY | uncharacterized protein |
| ? | CP009273 | = 1302830 | 374 (0.920) | coding (73/1461 nt) | clsA | cardiolipin synthase 1 | |||||
| * | ? | CP009273 | 1314763 = | 267 (0.560) | 14 (0.040) | 5/94 | NT | 6.3% | coding (879/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| ? | CP009273 | 1314808 = | 190 (0.480) | coding (834/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase | |||||
| * | ? | CP009273 | 1433166 = | 223 (0.470) | 14 (0.030) | 11/96 | NT | 6.1% | coding (1876/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase |
| ? | CP009273 | 1433229 = | 239 (0.590) | coding (1813/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase | |||||
| * | ? | CP009273 | 1505831 = | 289 (0.610) | 26 (0.070) | 9/94 | NT | 9.2% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 272 (0.680) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
| * | ? | CP009273 | 1586885 = | NA (NA) | 3 (0.010) | 3/90 | NT | NA | intergenic (‑186/+37) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
| ? | CP009273 | 1586916 = | NA (NA) | intergenic (‑217/+6) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog | |||||
| * | ? | CP009273 | = 1793039 | 192 (0.400) | 9 (0.020) | 5/96 | NT | 5.2% | coding (161/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit |
| ? | CP009273 | = 1793052 | 163 (0.400) | coding (148/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit | |||||
| * | ? | CP009273 | = 1805559 | 372 (0.780) | 16 (0.040) | 11/90 | NT | 5.4% | coding (369/1392 nt) | ydjN | putative transporter |
| ? | CP009273 | 1806322 = | 259 (0.680) | coding (1132/1392 nt) | ydjN | putative transporter | |||||
| * | ? | CP009273 | = 1823129 | 213 (0.450) | 17 (0.040) | 9/94 | NT | 7.3% | coding (863/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | = 1823150 | 254 (0.640) | coding (842/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | CP009273 | = 1870380 | 282 (0.590) | 15 (0.040) | 9/94 | NT | 5.8% | coding (451/1182 nt) | yeaN | putative transporter |
| ? | CP009273 | = 1870397 | 251 (0.630) | coding (468/1182 nt) | yeaN | putative transporter | |||||
| * | ? | CP009273 | = 1871532 | 303 (0.640) | 20 (0.050) | 8/96 | NT | 7.1% | intergenic (+19/+3) | yeaO/yoaF | DUF488 family protein/DUF333 family outer membrane lipoprotein |
| ? | CP009273 | = 1871547 | 261 (0.640) | coding (243/255 nt) | yoaF | DUF333 family outer membrane lipoprotein | |||||
| * | ? | CP009273 | = 1940291 | 227 (0.480) | 20 (0.050) | 10/96 | NT | 6.4% | intergenic (‑58/+81) | ruvA/yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein |
| ? | CP009273 | = 1940293 | 390 (0.960) | intergenic (‑60/+79) | ruvA/yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein | |||||
| * | ? | CP009273 | = 1948765 | NA (NA) | 11 (0.030) | 6/98 | NT | NA | noncoding (80/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1948776 | NA (NA) | noncoding (91/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 1958516 = | 340 (0.720) | 19 (0.050) | 8/96 | NT | 6.7% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | CP009273 | 1958598 = | 238 (0.580) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
| * | ? | CP009273 | 1985565 = | 327 (0.690) | 14 (0.030) | 9/96 | NT | 5.8% | noncoding (34/76 nt) | glyW | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 177 (0.430) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
| * | ? | CP009273 | = 2139980 | 269 (0.570) | 14 (0.040) | 9/94 | NT | 5.5% | coding (3234/3318 nt) | yegE | putative diguanylate cyclase |
| ? | CP009273 | = 2140007 | 257 (0.640) | coding (3261/3318 nt) | yegE | putative diguanylate cyclase | |||||
| * | ? | CP009273 | = 2145164 | NA (NA) | 4 (0.010) | 4/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2191253 | 186 (0.390) | 17 (0.040) | 6/90 | NT | 8.1% | pseudogene (1301/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| ? | CP009273 | = 2191263 | 236 (0.620) | pseudogene (1311/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function | |||||
| * | ? | CP009273 | = 2230114 | NA (NA) | 5 (0.010) +CTACAATAAGCTC |
4/86 | NT | NA | noncoding (102/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2230185 | NA (NA) | intergenic (+206/+37) | preA/mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit | |||||
| * | ? | CP009273 | 2261913 = | 322 (0.680) | 22 (0.050) | 6/96 | NT | 6.6% | coding (606/987 nt) | yeiR | Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein |
| ? | CP009273 | 2261994 = | 342 (0.840) | coding (687/987 nt) | yeiR | Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein | |||||
| * | ? | CP009273 | 2269311 = | 346 (0.730) | 20 (0.050) | 8/96 | NT | 7.0% | coding (560/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | 2269347 = | 231 (0.570) | coding (596/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family | |||||
| * | ? | CP009273 | 2279605 = | 339 (0.710) | 21 (0.060) | 9/86 | NT | 8.7% | coding (1751/1761 nt) | yejM | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| ? | CP009273 | 2279638 = | 179 (0.490) | intergenic (+23/‑52) | yejM/proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro | |||||
| * | ? | CP009273 | 2298296 = | NA (NA) | 4 (0.010) | 4/98 | NT | 100% | noncoding (401/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | 2298427 = | 0 (0.000) | noncoding (532/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | CP009273 | = 2333843 | NA (NA) | 6 (0.010) | 4/98 | NT | NA | noncoding (52/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 2333873 | NA (NA) | noncoding (82/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | = 2402276 | NA (NA) | 12 (0.030) | 4/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2416916 = | 486 (1.020) | 18 (0.040) | 11/96 | NT | 5.0% | coding (103/891 nt) | yfcI | transposase_31 family protein |
| ? | CP009273 | 2416950 = | 267 (0.660) | coding (69/891 nt) | yfcI | transposase_31 family protein | |||||
| * | ? | CP009273 | 2436000 = | 269 (0.570) | 17 (0.040) | 7/94 | NT | 6.7% | coding (758/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | 2436103 = | 244 (0.610) | coding (861/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | = 2436008 | 315 (0.660) | 16 (0.040) | 7/94 | NT | 5.9% | coding (766/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | = 2436093 | 244 (0.610) | coding (851/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | = 2499292 | 362 (0.760) | 21 (0.050) | 12/98 | NT | 5.8% | coding (820/1086 nt) | ypdF | Xaa‑Pro aminopeptidase |
| ? | CP009273 | = 2499321 | 364 (0.880) | coding (791/1086 nt) | ypdF | Xaa‑Pro aminopeptidase | |||||
| * | ? | CP009273 | = 2502173 | 247 (0.520) | 13 (0.030) | 8/92 | NT | 6.1% | coding (733/966 nt) | glk | glucokinase |
| ? | CP009273 | = 2502211 | 194 (0.500) | coding (695/966 nt) | glk | glucokinase | |||||
| * | ? | CP009273 | 2559874 = | 238 (0.500) | 10 (0.020) | 7/96 | NT | 5.3% | coding (370/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase |
| ? | CP009273 | 2559934 = | 155 (0.380) | coding (310/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase | |||||
| * | ? | CP009273 | 2590222 = | 300 (0.630) | 13 (0.030) | 6/90 | NT | 5.3% | intergenic (‑126/+42) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| ? | CP009273 | 2590249 = | 224 (0.590) | intergenic (‑153/+15) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase | |||||
| * | ? | CP009273 | = 2636459 | 363 (0.760) | 20 (0.060) | 6/84 | NT | 5.8% | intergenic (‑256/+29) | rodZ/rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| ? | CP009273 | = 2636469 | 373 (1.050) | intergenic (‑266/+19) | rodZ/rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent | |||||
| * | ? | CP009273 | 2640634 = | 339 (0.710) | 13 (0.030) | 6/94 | NT | 5.2% | coding (51/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | 2640664 = | 186 (0.470) | coding (21/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
| * | ? | CP009273 | 2655857 = | NA (NA) | 6 (0.010) | 5/98 | NT | 100% | noncoding (190/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | CP009273 | 2655873 = | 0 (0.000) | noncoding (206/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | CP009273 | = 2691481 | 377 (0.790) | 31 (0.070) | 13/100 | NT | 8.0% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 376 (0.890) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
| * | ? | CP009273 | = 2749471 | 385 (0.810) | 25 (0.070) | 10/90 | NT | 7.0% | intergenic (+734/‑47) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase |
| ? | CP009273 | = 2749488 | 353 (0.920) | intergenic (+751/‑30) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase | |||||
| * | ? | CP009273 | = 2787501 | NA (NA) | 11 (0.030) | 4/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2787742 = | 458 (0.960) | 27 (0.070) | 9/96 | NT | 7.0% | coding (131/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| ? | CP009273 | 2787778 = | 322 (0.790) | coding (167/1401 nt) | gabP | gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2791412 = | NA (NA) | 3 (0.010) | 3/100 | NT | NA | noncoding (1/30 nt) | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2791442 = | NA (NA) | intergenic (+39/+8) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated | |||||
| * | ? | CP009273 | = 2811634 | NA (NA) | 77 (0.300) +26 bp |
4/60 | NT | 27.7% | intergenic (‑1/+198) | argY/argV | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | = 2811844 | 376 (0.790) | noncoding (65/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | 2845465 = | 235 (0.490) | 26 (0.060) | 10/96 | NT | 9.3% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 303 (0.740) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
| * | ? | CP009273 | 2925176 = | NA (NA) | 5 (0.010) | 4/92 | NT | NA | noncoding (1/30 nt) | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2925206 = | NA (NA) | intergenic (+37/+18) | ygdG/fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase | |||||
| * | ? | CP009273 | 2930783 = | NA (NA) | 17 (0.040) | 6/90 | NT | NA | intergenic (+65/‑14) | fucI/fucK | L‑fucose isomerase/L‑fuculokinase |
| ? | CP009273 | 2930811 = | NA (NA) | coding (15/1449 nt) | fucK | L‑fuculokinase | |||||
| * | ? | CP009273 | 2943957 = | NA (NA) | 6 (0.020) | 4/92 | NT | NA | intergenic (+25/+37) | argA/recD | fused acetylglutamate kinase homolog (inactive)/amino acid N‑acetyltransferase/exonuclease V (RecBCD complex), alpha chain |
| ? | CP009273 | 2943974 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2955828 | 443 (0.930) | 14 (0.040) | 11/94 | NT | 5.1% | coding (296/324 nt) | ppdC | putative prepilin peptidase‑dependent protein |
| ? | CP009273 | = 2955884 | 151 (0.380) | coding (240/324 nt) | ppdC | putative prepilin peptidase‑dependent protein | |||||
| * | ? | CP009273 | = 3015939 | 513 (1.080) | 33 (0.080) | 14/96 | NT | 7.4% | coding (1265/2871 nt) | xdhD | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| ? | CP009273 | = 3015996 | 385 (0.950) | coding (1322/2871 nt) | xdhD | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding | |||||
| * | ? | CP009273 | 3060669 = | 394 (0.830) | 16 (0.040) | 7/92 | NT | 5.7% | intergenic (‑137/+30) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| ? | CP009273 | 3060693 = | 206 (0.530) | intergenic (‑161/+6) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein | |||||
| * | ? | CP009273 | = 3202572 | 451 (0.950) | 40 (0.100) | 10/92 | NT | 10.8% | coding (1190/1464 nt) | ttdT | L‑tartrate/succinate antiporte |
| ? | CP009273 | = 3202615 | 290 (0.740) | coding (1233/1464 nt) | ttdT | L‑tartrate/succinate antiporte | |||||
| * | ? | CP009273 | 3202855 = | NA (NA) | 12 (0.030) | 5/94 | NT | NA | intergenic (+9/+34) | ttdT/tsaD | L‑tartrate/succinate antiporte/tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
| ? | CP009273 | 3202881 = | NA (NA) | intergenic (+35/+8) | ttdT/tsaD | L‑tartrate/succinate antiporte/tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein | |||||
| * | ? | CP009273 | 3215213 = | 421 (0.890) | 44 (0.110) | 11/96 | NT | 10.3% | coding (389/984 nt) | ebgR | transcriptional repressor |
| ? | CP009273 | 3215274 = | 404 (0.990) | coding (450/984 nt) | ebgR | transcriptional repressor | |||||
| * | ? | CP009273 | 3256491 = | 846 (1.780) | 39 (0.100) | 12/90 | NT | 5.9% | coding (529/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic |
| ? | CP009273 | 3256545 = | 569 (1.490) | coding (475/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | CP009273 | = 3263325 | NA (NA) | 111 (0.320) +TTCGGCGGGTTTTTA |
7/82 | NT | 27.6% | intergenic (+364/+250) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | CP009273 | = 3263427 | 397 (0.840) | intergenic (+466/+148) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | CP009273 | 3293574 = | 570 (1.200) | 28 (0.070) | 9/90 | NT | 6.2% | coding (250/303 nt) | yhbQ | GIY‑YIG nuclease superfamily protein |
| ? | CP009273 | 3293608 = | 387 (1.010) | coding (284/303 nt) | yhbQ | GIY‑YIG nuclease superfamily protein | |||||
| * | ? | CP009273 | 3323803 = | NA (NA) | 4 (0.010) +G |
3/110 | NT | NA | intergenic (+48/+138) | dacB/obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| ? | CP009273 | = 3734462 | NA (NA) | intergenic (+144/+7) | avtA/ysaA | valine‑pyruvate aminotransferase 1/putative hydrogenase, 4Fe‑4S ferredoxin‑type component | |||||
| * | ? | CP009273 | = 3348965 | 568 (1.200) | 35 (0.090) | 17/96 | NT | 6.5% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 520 (1.280) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | CP009273 | 3375198 = | 660 (1.390) | 46 (0.120) | 11/94 | NT | 8.2% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 479 (1.200) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | CP009273 | = 3385701 | NA (NA) | 5 (0.010) +CTACAAACG |
4/94 | NT | NA | noncoding (267/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | = 3385752 | NA (NA) | intergenic (‑365/+65) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein | |||||
| * | ? | CP009273 | = 3487124 | NA (NA) | 19 (0.050) | 8/96 | NT | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3487134 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 3613129 | NA (NA) | 8 (0.020) | 5/106 | NT | NA | coding (578/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613200 | NA (NA) | coding (649/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3613276 = | NA (NA) | 22 (0.050) | 11/106 | NT | NA | coding (725/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3613329 = | NA (NA) | coding (778/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3613390 = | NA (NA) | 4 (0.010) | 4/90 | NT | 100% | coding (839/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3613665 = | 0 (0.000) | coding (1114/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3613476 | NA (NA) | 8 (0.020) | 7/100 | NT | 100% | coding (925/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613512 | 0 (0.000) | coding (961/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3614228 | NA (NA) | 12 (0.030) | 9/90 | NT | 100% | coding (1677/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3614368 | 0 (0.000) | coding (1817/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3614731 = | NA (NA) | 7 (0.020) | 6/98 | NT | 100% | coding (2180/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3614737 = | 0 (0.000) | coding (2186/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3615349 = | NA (NA) | 10 (0.020) | 8/96 | NT | 100% | coding (2798/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3615372 = | 0 (0.000) | coding (2821/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3630213 | 304 (0.640) | 48 (0.130) | 22/84 | NT | 17.5% | coding (558/1203 nt) | yhiN | putative oxidoreductase |
| ? | CP009273 | = 3630199 | 224 (0.630) | coding (572/1203 nt) | yhiN | putative oxidoreductase | |||||
| * | ? | CP009273 | = 3693271 | 338 (0.710) | 19 (0.050) | 7/94 | NT | 6.0% | intergenic (+18/+69) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small |
| ? | CP009273 | = 3693281 | 315 (0.790) | intergenic (+28/+59) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small | |||||
| * | ? | CP009273 | 3701734 = | NA (NA) | 17 (0.040) | 8/96 | NT | 7.8% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 236 (0.500) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | 3701775 = | 85 (0.180) | 7 (0.020) | 7/88 | NT | 7.5% | intergenic (‑710/+201) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701802 = | 107 (0.290) | intergenic (‑737/+174) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3701786 | 107 (0.230) | 19 (0.050) | 11/88 | NT | 18.4% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3707970 | 434 (0.910) | 22 (0.060) | 10/94 | NT | 5.6% | coding (1785/2334 nt) | bisC | biotin sulfoxide reductase |
| ? | CP009273 | = 3707984 | 381 (0.960) | coding (1771/2334 nt) | bisC | biotin sulfoxide reductase | |||||
| * | ? | CP009273 | = 3729681 | NA (NA) | 7 (0.020) | 5/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
| * | ? | CP009273 | 3758457 = | NA (NA) | 122 (0.260) | 4/110 | NT | 11.0% | coding (2915/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | CP009273 | 3760580 = | 1003 (2.110) | intergenic (+41/‑1) | yibA/rhsJ | HEAT‑domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA/Rhs‑family protein | |||||
| * | ? | CP009273 | = 3808465 | NA (NA) | 4 (0.010) | 3/92 | NT | NA | noncoding (9/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3808469 | NA (NA) | noncoding (13/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 3820789 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | intergenic (+138/+31) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter |
| ? | CP009273 | = 3820811 | NA (NA) | intergenic (+160/+9) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter | |||||
| * | ? | CP009273 | 3832491 = | 386 (0.810) | 25 (0.060) | 6/96 | NT | 7.8% | coding (884/924 nt) | yicL | EamA family inner membrane putative transporter |
| ? | CP009273 | 3832524 = | 260 (0.640) | coding (917/924 nt) | yicL | EamA family inner membrane putative transporter | |||||
| * | ? | CP009273 | 3847022 = | NA (NA) | 8 (0.020) | 5/88 | NT | NA | intergenic (+20/‑260) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| ? | CP009273 | 3847050 = | NA (NA) | intergenic (+48/‑232) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein | |||||
| * | ? | CP009273 | 3851553 = | 686 (1.440) | 44 (0.120) | 14/86 | NT | 9.1% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 355 (0.970) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | CP009273 | 3920778 = | 467 (0.980) | 75 (0.200) | 13/88 | NT | 15.2% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 473 (1.270) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | CP009273 | = 3921522 | 619 (1.300) | 44 (0.100) | 6/100 | NT | 7.2% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 574 (1.350) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
| * | ? | CP009273 | = 3935250 | NA (NA) | 163 (0.390) +AAGCTGT |
8/98 | NT | NA | noncoding (83/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4028968 | NA (NA) | noncoding (78/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | = 4047497 | 495 (1.040) | 41 (0.100) | 11/94 | NT | 8.6% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 452 (1.130) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
| * | ? | CP009273 | 4061067 = | 741 (1.560) | 40 (0.100) | 11/94 | NT | 7.1% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 427 (1.070) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
| * | ? | CP009273 | = 4072557 | 331 (0.700) | 30 (0.100) | 12/68 | NT | 7.5% | intergenic (+759/‑100) | yiiD/yiiE | putative acetyltransferase/CopG family putative transcriptional regulator |
| ? | CP009273 | 4072996 = | 542 (1.880) | intergenic (+127/‑115) | yiiE/yiiF | CopG family putative transcriptional regulator/putative thymol sensitivity protein, CopG family putative transcriptional regulator | |||||
| * | ? | CP009273 | = 4127796 | NA (NA) | 8 (0.020) | 7/98 | NT | NA | noncoding (80/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4127807 | NA (NA) | noncoding (91/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 4156417 = | NA (NA) | 12 (0.030) | 4/112 | NT | NA | intergenic (+204/‑170) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| ? | CP009273 | 4197929 = | NA (NA) | intergenic (‑469/‑146) | purH/rrsE | fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | 4161825 = | NA (NA) | 11 (0.030) | 6/96 | NT | 100% | intergenic (+141/‑160) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | CP009273 | 4161830 = | 0 (0.000) | intergenic (+146/‑155) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | CP009273 | 4190073 = | 456 (0.960) | 36 (0.090) | 10/90 | NT | 9.2% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 341 (0.890) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | CP009273 | = 4248867 | 291 (0.610) | 13 (0.030) | 3/98 | NT | 5.3% | coding (1198/1380 nt) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| ? | CP009273 | = 4248885 | 207 (0.500) | coding (1216/1380 nt) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein | |||||
| * | ? | CP009273 | = 4308345 | 488 (1.030) | 30 (0.080) | 10/94 | NT | 7.5% | coding (237/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| ? | CP009273 | = 4308403 | 335 (0.840) | coding (179/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein | |||||
| * | ? | CP009273 | 4315768 = | NA (NA) | 11 (0.030) | 7/98 | NT | NA | noncoding (150/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | 4315798 = | NA (NA) | noncoding (180/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | CP009273 | 4328027 = | 226 (0.480) | 14 (0.030) | 10/96 | NT | 5.4% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 294 (0.720) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
| * | ? | CP009273 | = 4386424 | 257 (0.540) | 13 (0.030) | 5/96 | NT | 5.8% | coding (543/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| ? | CP009273 | = 4386471 | 204 (0.500) | coding (590/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||
| * | ? | CP009273 | 4506708 = | 376 (0.790) | 15 (0.040) | 9/94 | NT | 5.2% | coding (827/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | CP009273 | 4506742 = | 233 (0.580) | coding (793/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | CP009273 | 4512275 = | 356 (0.750) | 35 (0.090) | 13/92 | NT | 10.0% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 337 (0.860) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | CP009273 | = 4538708 | 448 (0.940) | 19 (0.050) | 7/94 | NT | 5.0% | coding (84/903 nt) | fimH | minor component of type 1 fimbriae |
| ? | CP009273 | = 4538723 | 340 (0.850) | coding (99/903 nt) | fimH | minor component of type 1 fimbriae | |||||
| * | ? | CP009273 | = 4548130 | 382 (0.800) | 16 (0.040) | 6/88 | NT | 5.3% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 266 (0.710) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | CP009273 | 4583141 = | NA (NA) | 10 (0.030) | 5/90 | NT | NA | intergenic (+12/+37) | tsr/yjjL | methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter |
| ? | CP009273 | 4583171 = | NA (NA) | intergenic (+42/+7) | tsr/yjjL | methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter | |||||
| * | ? | CP009273 | 4586926 = | NA (NA) | 8 (0.020) | 6/88 | NT | NA | noncoding (13/39 nt) | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4586955 = | NA (NA) | intergenic (+126/+12) | yjjN/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferases I and II | |||||