mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 66,706 | T→C | 66.8% | intergenic (‑174/‑168) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 66,726 | T→C | 67.0% | intergenic (‑194/‑148) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 86,358 | C→T | 10.0% | H80Y (CAT→TAT) | mraZ → | RsmH methytransferase inhibitor |
| RA | 122,580 | T→C | 5.0% | A133A (GCT→GCC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 122,613 | G→A | 5.5% | K144K (AAG→AAA) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 161,106 | T→G | 10.0% | intergenic (+85/‑111) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 226,794 | C→T | 6.0% | G192E (GGA→GAA) | yafC ← | LysR family putative transcriptional regulator |
| RA | 417,885 | T→G | 11.8% | intergenic (+70/‑89) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| RA | 507,925 | G→A | 10.7% | A277T (GCC→ACC) | glsA → | glutaminase 1 |
| RA | 691,986 | T→G | 5.1% | intergenic (‑26/+12) | glnX ← / ← glnV | tRNA‑Gln/tRNA‑Gln |
| RA | 692,043 | T→A | 7.3% | noncoding (30/75 nt) | glnV ← | tRNA‑Gln |
| RA | 802,799 | C→G | 9.8% | intergenic (‑62/+90) | ybhC ← / ← ybhB | acyl‑CoA thioesterase, lipoprotein/kinase inhibitor homolog, UPF0098 family |
| RA | 931,040 | A→T | 7.7% | P787P (CCA→CCT) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 999,590 | A→C | 5.3% | N63T (AAC→ACC) | ycbF → | putative periplasmic pilin chaperone |
| RA | 999,598 | A→C | 10.5% | T66P (ACG→CCG) | ycbF → | putative periplasmic pilin chaperone |
| RA | 1,191,676 | C→T | 7.9% | H366H (CAC→CAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,191,688 | C→T | 5.3% | T370T (ACC→ACT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,268,331 | G→A | 8.6% | L123L (TTG→TTA) | chaC → | cation transport regulator |
| RA | 1,282,421 | A→C | 7.1% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,302,995 | T→G | 14.1% | intergenic (‑93/‑50) | clsA ← / → yciY | cardiolipin synthase 1/uncharacterized protein |
| RA | 1,460,356 | T→C | 13.7% | pseudogene (708/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,359 | A→G | 11.8% | pseudogene (711/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,593 | C→G | 10.1% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| JC | 1,476,957 | Δ12 bp | 7.3% | coding (150‑161/606 nt) | azoR ← | NADH‑azoreductase, FMN‑dependent |
| RA | 1,702,966 | T→A | 11.3% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,044 | C→A | 9.6% | V623V (GTC→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,062 | T→A | 18.1% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,158 | A→C | 14.2% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,295 | T→A | 16.0% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,303 | G→C | 6.9% | E710Q (GAA→CAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 2,511,629 | A→T | 5.7% | intergenic (‑34/+6) | alaX ← / ← alaW | tRNA‑Ala/tRNA‑Ala |
| RA | 2,514,509 | G→T | 5.1% | intergenic (+24/‑23) | valU → / → valY | tRNA‑Val/tRNA‑Val |
| RA | 2,554,344 | C→A | 8.5% | intergenic (+87/‑383) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,554,355 | G→T | 7.8% | intergenic (+98/‑372) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,762,276 | C→T | 9.1% | L85L (CTG→TTG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,278 | G→A | 9.2% | L85L (CTG→CTA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,281 | C→T | 6.9% | R86R (CGC→CGT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,284 | A→T | 7.1% | L87L (CTA→CTT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,287 | T→C | 6.7% | R88R (CGT→CGC) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,288 | C→A | 6.8% | R89R (CGG→AGG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,293 | G→A | 6.7% | E90E (GAG→GAA) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,299 | A→T | 6.3% | Q92H (CAA→CAT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,304 | C→A | 6.2% | T94N (ACC→AAC) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,308 | T→G | 6.4% | G95G (GGT→GGG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,309 | A→C | 6.4% | K96Q (AAA→CAA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,311 | A→G | 6.5% | K96K (AAA→AAG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,312 | C→G | 6.3% | Q97E (CAG→GAG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,314 | G→A | 6.2% | Q97Q (CAG→CAA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,320 | G→T | 6.0% | P99P (CCG→CCT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 3,256,867 | C→G | 5.1% | E51D (GAG→GAC) | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,263,315 | T→A | 6.3% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,328 | A→C | 8.8% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,441 | A→C | 9.1% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,554 | A→C | 7.2% | intergenic (+593/+21) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,462,438 | C→A | 6.9% | A259S (GCA→TCA) | chiA ← | periplasmic endochitinase |
| RA | 3,462,439 | C→A | 8.6% | A258A (GCG→GCT) | chiA ← | periplasmic endochitinase |
| RA | 3,985,309 | T→C | 23.4% | L266P (CTG→CCG) | cyaA → | adenylate cyclase |
| RA | 3,986,739 | C→T | 5.4% | Q743* (CAG→TAG) | cyaA → | adenylate cyclase |
| RA | 3,991,405 | A→C | 7.7% | P21P (CCA→CCC) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,991,416 | T→G | 10.7% | L25R (CTT→CGT) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,063,843 | A→C | 11.9% | intergenic (‑82/+32) | yihR ← / ← yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| RA | 4,106,456 | C→T | 12.0% | G232D (GGC→GAC) ‡ | glpK ← | glycerol kinase |
| RA | 4,106,457 | C→T | 15.0% | G232S (GGC→AGC) ‡ | glpK ← | glycerol kinase |
| RA | 4,106,744 | T→C | 7.4% | Y136C (TAC→TGC) | glpK ← | glycerol kinase |
| RA | 4,106,863 | C→A | 22.8% | K96N (AAG→AAT) | glpK ← | glycerol kinase |
| RA | 4,176,299 | A→G | 82.9% | N341S (AAC→AGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,264,220 | C→T | 9.5% | H56H (CAC→CAT) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,226 | T→G | 12.8% | V58V (GTT→GTG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,241 | A→G | 13.2% | K63K (AAA→AAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,244 | G→C | 11.2% | L64L (CTG→CTC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,247 | A→G | 11.3% | A65A (GCA→GCG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,256 | G→A | 14.1% | A68A (GCG→GCA) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,257 | A→G | 14.0% | S69G (AGC→GGC) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,259 | C→T | 14.0% | S69S (AGC→AGT) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,264 | A→G | 13.8% | Y71C (TAT→TGT) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,271 | T→C | 10.2% | R73R (CGT→CGC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,274 | A→G | 8.8% | K74K (AAA→AAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,277 | T→C | 7.9% | G75G (GGT→GGC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,278 | T→G | 8.4% | S76A (TCT→GCT) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,280 | T→G | 7.7% | S76S (TCT→TCG) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,286 | T→C | 8.1% | V78V (GTT→GTC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,289 | T→C | 6.9% | Y79Y (TAT→TAC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,382,371 | G→T | 10.6% | intergenic (+7/‑29) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| RA | 4,382,381 | T→A | 6.2% | intergenic (+17/‑19) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| RA | 4,384,699 | A→C | 6.5% | T273P (ACG→CCG) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,490,454 | C→T | 6.6% | pseudogene (155/258 nt) | yjgX ← | pseudogene fragment |
| RA | 4,596,005 | T→A | 6.3% | intergenic (‑23/+12) | leuV ← / ← leuP | tRNA‑Leu/tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 246554 | 247261 | 708 | 132 [122] | [127] 135 | [lfhA]–[lafU] | [lfhA],[lafU] |
| * | * | ÷ | CP009273 | 2597319 | 2598143 | 825 | 140 [88] | [127] 129 | hyfC | hydrogenase 4, membrane subunit |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 342 (0.820) | 22 (0.060) | 12/92 | NT | 6.0% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 411 (1.210) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
| * | ? | CP009273 | 66560 = | 290 (0.700) | 464 (1.840) +22 bp |
44/68 | NT | 65.8% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 504 (1.220) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | 108768 = | 338 (0.820) | 18 (0.050) | 7/100 | NT | 5.5% | coding (319/744 nt) | zapD | FtsZ stabilizer |
| ? | CP009273 | 108799 = | 316 (0.850) | coding (288/744 nt) | zapD | FtsZ stabilizer | |||||
| * | ? | CP009273 | 138464 = | NA (NA) | 6 (0.020) | 5/94 | NT | NA | intergenic (+10/+31) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase |
| ? | CP009273 | 138487 = | NA (NA) | intergenic (+33/+8) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase | |||||
| * | ? | CP009273 | 142767 = | 378 (0.910) | 19 (0.050) | 8/94 | NT | 6.5% | coding (1200/1230 nt) | yadE | putative polysaccharide deacetylase lipoprotein |
| ? | CP009273 | 142790 = | 231 (0.660) | coding (1223/1230 nt) | yadE | putative polysaccharide deacetylase lipoprotein | |||||
| * | ? | CP009273 | = 173463 | NA (NA) | 7 (0.020) | 7/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 221943 = | NA (NA) | 42 (0.120) | 13/94 | NT | NA | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | CP009273 | 221964 = | NA (NA) | intergenic (+20/‑23) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | CP009273 | 222376 = | NA (NA) | 8 (0.020) | 4/98 | NT | NA | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 222394 = | NA (NA) | noncoding (149/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 232154 | 273 (0.660) | 15 (0.040) | 6/92 | NT | 6.1% | coding (336/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| ? | CP009273 | = 232160 | 240 (0.700) | coding (330/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids | |||||
| * | ? | CP009273 | = 353273 | NA (NA) | 6 (0.020) | 4/98 | NT | NA | noncoding (79/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 353448 | NA (NA) | noncoding (54/79 nt) | REP28 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP28 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 360070 = | 340 (0.820) | 257 (0.830) +CTGATCAGTGAATT |
18/84 | NT | 49.6% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 355 (0.860) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 360096 | 361 (0.870) | 579 (1.420) | 26/110 | NT | 58.4% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 472 (1.160) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
| * | ? | CP009273 | 360104 = | 344 (0.830) | 540 (1.300) | 66/112 | NT | 61.1% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 360168 = | NA (NA) | 31 (0.090) | 10/94 | NT | NA | intergenic (‑102/+493) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 360191 = | NA (NA) | intergenic (‑125/+470) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 376748 = | NA (NA) | 13 (0.040) | 9/94 | NT | NA | intergenic (‑33/‑59) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | 376768 = | NA (NA) | intergenic (‑53/‑39) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | 376909 = | NA (NA) | 5 (0.010) | 4/100 | NT | NA | coding (103/366 nt) | insC1 | IS2 repressor TnpA |
| ? | CP009273 | 376922 = | NA (NA) | coding (116/366 nt) | insC1 | IS2 repressor TnpA | |||||
| * | ? | CP009273 | = 377145 | NA (NA) | 8 (0.020) | 4/94 | NT | NA | coding (339/366 nt) coding (16/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
| ? | CP009273 | = 377199 | NA (NA) | coding (70/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 394482 | NA (NA) | 5 (0.010) | 4/98 | NT | NA | coding (308/309 nt) | yaiY | DUF2755 family inner membrane protein |
| ? | CP009273 | = 394503 | NA (NA) | coding (287/309 nt) | yaiY | DUF2755 family inner membrane protein | |||||
| * | ? | CP009273 | = 410282 | 351 (0.850) | 31 (0.090) | 12/98 | NT | 8.7% | coding (928/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent |
| ? | CP009273 | = 410288 | 341 (0.940) | coding (922/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent | |||||
| * | ? | CP009273 | 442673 = | 337 (0.810) | 19 (0.060) | 8/90 | NT | 5.8% | coding (489/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | 442734 = | 343 (1.030) | coding (428/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | = 442683 | 334 (0.810) | 31 (0.090) | 10/90 | NT | 9.2% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 343 (1.030) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | 519440 = | 279 (0.670) | 17 (0.050) | 12/96 | NT | 5.5% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 348 (0.980) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 576705 = | NA (NA) | 6 (0.020) | 3/98 | NT | NA | coding (416/546 nt) | nohD | DLP12 prophage; DNA packaging protein |
| ? | CP009273 | 576725 = | NA (NA) | coding (436/546 nt) | nohD | DLP12 prophage; DNA packaging protein | |||||
| * | ? | CP009273 | 605591 = | NA (NA) | 7 (0.020) | 5/98 | NT | NA | noncoding (19/98 nt) | RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 2648336 = | NA (NA) | noncoding (8/97 nt) | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 610426 | 192 (0.460) | 21 (0.060) | 4/96 | NT | 10.4% | coding (814/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent |
| ? | CP009273 | = 610453 | 198 (0.560) | coding (841/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent | |||||
| * | ? | CP009273 | 699831 = | 333 (0.800) | 28 (0.080) | 6/96 | NT | 9.9% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 222 (0.620) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
| * | ? | CP009273 | = 725679 | NA (NA) | 6 (0.020) | 5/100 | NT | NA | coding (641/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725702 | NA (NA) | coding (664/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 725724 | NA (NA) | 20 (0.060) | 9/94 | NT | NA | coding (686/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725738 | NA (NA) | coding (700/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 725766 = | NA (NA) | 3 (0.010) | 3/104 | NT | NA | coding (728/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 725788 = | NA (NA) | coding (750/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 725820 | 0 (0.000) | 5 (0.010) | 4/104 | NT | 100% | coding (782/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 3613270 | NA (NA) | coding (719/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 727866 | 1 (0.000) | 10 (0.030) | 5/96 | NT | 92.1% | coding (2828/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 729698 | NA (NA) | pseudogene (110/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
| * | ? | CP009273 | 728285 = | NA (NA) | 5 (0.010) | 3/108 | NT | NA | coding (3247/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 728314 = | NA (NA) | coding (3276/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 730100 | 40 (0.100) | 6 (0.020) | 5/104 | NT | 13.9% | pseudogene (512/1521 nt) | rhsO | pseudogene, Rhs family protein |
| ? | CP009273 | = 730150 | NA (NA) | pseudogene (562/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
| * | ? | CP009273 | 859744 = | NA (NA) | 8 (0.020) | 4/92 | NT | NA | coding (647/663 nt) | fsaA | fructose‑6‑phosphate aldolase 1 |
| ? | CP009273 | 859774 = | NA (NA) | intergenic (+14/+62) | fsaA/moeB | fructose‑6‑phosphate aldolase 1/molybdopterin synthase sulfurylase | |||||
| * | ? | CP009273 | = 902734 | 176 (0.420) | 10 (0.030) | 6/98 | NT | 5.8% | coding (1005/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | CP009273 | = 902785 | 170 (0.470) | coding (954/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | CP009273 | 910536 = | NA (NA) | 14 (0.040) | 5/92 | NT | 12.3% | intergenic (‑223/+272) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | 910538 = | 121 (0.290) | intergenic (‑225/+270) | ybjE/aqpZ | putative transporter/aquaporin Z | |||||
| * | ? | CP009273 | 1070341 = | NA (NA) | 6 (0.020) | 3/94 | NT | NA | noncoding (1/28 nt) | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1070369 = | NA (NA) | intergenic (+33/+7) | rutR/putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase | |||||
| * | ? | CP009273 | = 1070400 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | coding (3939/3963 nt) | putA | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| ? | CP009273 | = 1070404 | NA (NA) | coding (3935/3963 nt) | putA | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase | |||||
| * | ? | CP009273 | = 1092557 | NA (NA) | 22 (0.060) | 9/96 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092561 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1092806 = | NA (NA) | 8 (0.020) | 5/106 | NT | NA | intergenic (+521/+215) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093009 = | NA (NA) | intergenic (+724/+12) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1101408 = | 143 (0.340) | 20 (0.060) | 8/94 | NT | 14.0% | coding (133/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| ? | CP009273 | 1101450 = | 125 (0.360) | coding (175/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit | |||||
| * | ? | CP009273 | 1111080 = | NA (NA) | 13 (0.040) | 4/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| * | ? | CP009273 | = 1161581 | 197 (0.480) | 19 (0.060) | 11/82 | NT | 13.0% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 110 (0.360) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | = 1161584 | 203 (0.490) | 11 (0.030) | 7/108 | NT | 6.3% | coding (44/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162080 = | 132 (0.330) | coding (540/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | = 1171846 | 298 (0.720) | 19 (0.050) | 10/96 | NT | 7.1% | coding (964/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein |
| ? | CP009273 | = 1171942 | 244 (0.690) | coding (1060/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein | |||||
| * | ? | CP009273 | 1182535 = | NA (NA) | 4 (0.010) | 4/90 | NT | NA | intergenic (+9/+40) | pepT/roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| ? | CP009273 | 1182560 = | NA (NA) | noncoding (22/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 1199277 = | 411 (0.990) | 42 (0.120) | 23/94 | NT | 11.4% | coding (554/558 nt) | ymfL | e14 prophage; putative DNA‑binding transcriptional regulator |
| ? | CP009273 | = 1289207 | 305 (0.880) | coding (225/618 nt) | tdk | thymidine kinase/deoxyuridine kinase | |||||
| * | ? | CP009273 | 1203246 = | 301 (0.730) | 103 (0.350) | 30/80 | NT | 36.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 137 (0.460) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 344 (0.830) | 93 (0.310) | 28/80 | NT | 32.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 137 (0.460) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1209039 = | 411 (0.990) | 32 (0.090) | 10/92 | NT | 9.3% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 289 (0.850) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
| * | ? | CP009273 | 1238033 = | 514 (1.240) | 19 (0.070) | 11/76 | NT | 6.1% | coding (504/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | CP009273 | 1238051 = | 233 (0.830) | coding (486/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | CP009273 | 1240767 = | 360 (0.870) | 42 (0.120) | 21/96 | NT | 11.6% | coding (152/441 nt) | ycgY | uncharacterized protein |
| ? | CP009273 | = 1302830 | 333 (0.940) | coding (73/1461 nt) | clsA | cardiolipin synthase 1 | |||||
| * | ? | CP009273 | = 1280805 | 434 (1.050) | 20 (0.060) | 6/96 | NT | 5.1% | coding (211/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| ? | CP009273 | = 1280852 | 377 (1.060) | coding (258/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 | |||||
| * | ? | CP009273 | 1314847 = | 188 (0.450) | 9 (0.030) | 8/96 | NT | 5.6% | coding (795/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| ? | CP009273 | 1314933 = | 140 (0.390) | coding (709/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase | |||||
| * | ? | CP009273 | 1505831 = | 307 (0.740) | 15 (0.040) | 7/94 | NT | 5.5% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 253 (0.730) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
| * | ? | CP009273 | 1641311 = | 360 (0.870) | 16 (0.050) | 8/90 | NT | 5.4% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 271 (0.810) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1783272 | 269 (0.650) | 14 (0.040) | 5/98 | NT | 5.2% | coding (581/1047 nt) | aroH | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
| ? | CP009273 | = 1783285 | 273 (0.750) | coding (594/1047 nt) | aroH | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible | |||||
| * | ? | CP009273 | 1793032 = | 137 (0.330) | 8 (0.020) | 5/96 | NT | 6.3% | coding (168/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit |
| ? | CP009273 | 1793061 = | 120 (0.340) | coding (139/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit | |||||
| * | ? | CP009273 | = 1823129 | 182 (0.440) | 15 (0.040) | 12/94 | NT | 8.7% | coding (863/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | = 1823150 | 162 (0.470) | coding (842/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | CP009273 | = 1870380 | 293 (0.710) | 16 (0.050) | 8/94 | NT | 5.3% | coding (451/1182 nt) | yeaN | putative transporter |
| ? | CP009273 | = 1870397 | 330 (0.950) | coding (468/1182 nt) | yeaN | putative transporter | |||||
| * | ? | CP009273 | = 1871532 | 333 (0.800) | 21 (0.060) | 6/96 | NT | 7.1% | intergenic (+19/+3) | yeaO/yoaF | DUF488 family protein/DUF333 family outer membrane lipoprotein |
| ? | CP009273 | = 1871547 | 264 (0.740) | coding (243/255 nt) | yoaF | DUF333 family outer membrane lipoprotein | |||||
| * | ? | CP009273 | 1958516 = | 319 (0.770) | 17 (0.050) | 8/96 | NT | 6.6% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | CP009273 | 1958598 = | 208 (0.590) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
| * | ? | CP009273 | = 1980922 | 259 (0.620) | 12 (0.040) | 8/92 | NT | 5.2% | intergenic (+13/+66) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/uncharacterized protein |
| ? | CP009273 | = 1980931 | 221 (0.650) | intergenic (+22/+57) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/uncharacterized protein | |||||
| * | ? | CP009273 | 2006338 = | 381 (0.920) | 15 (0.040) | 10/92 | NT | 5.3% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 220 (0.650) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
| * | ? | CP009273 | = 2145164 | NA (NA) | 8 (0.020) | 6/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2159840 | 395 (0.950) | 16 (0.050) | 9/94 | NT | 5.1% | coding (692/1362 nt) | yegQ | putative peptidase |
| ? | CP009273 | = 2159881 | 270 (0.780) | coding (733/1362 nt) | yegQ | putative peptidase | |||||
| * | ? | CP009273 | = 2191253 | 234 (0.560) | 17 (0.050) | 5/90 | NT | 6.9% | pseudogene (1301/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| ? | CP009273 | = 2191263 | 268 (0.800) | pseudogene (1311/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function | |||||
| * | ? | CP009273 | = 2229998 | 279 (0.670) | 19 (0.060) | 10/92 | NT | 5.9% | intergenic (+19/+224) | preA/mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit |
| ? | CP009273 | = 2230012 | 373 (1.100) | intergenic (+33/+210) | preA/mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit | |||||
| * | ? | CP009273 | 2269311 = | 318 (0.770) | 24 (0.070) | 12/96 | NT | 8.4% | coding (560/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | 2269347 = | 250 (0.700) | coding (596/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family | |||||
| * | ? | CP009273 | = 2312201 | 412 (0.990) | 15 (0.040) | 6/96 | NT | 5.1% | coding (1155/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| ? | CP009273 | = 2312252 | 210 (0.590) | coding (1104/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
| * | ? | CP009273 | = 2402276 | NA (NA) | 8 (0.020) | 4/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2416060 = | 329 (0.790) | 16 (0.050) | 8/90 | NT | 5.4% | coding (874/894 nt) | yfcH | putative NAD‑dependent nucleotide‑sugar epimerase |
| ? | CP009273 | 2416107 = | 292 (0.880) | intergenic (+27/+21) | yfcH/yfcI | putative NAD‑dependent nucleotide‑sugar epimerase/transposase_31 family protein | |||||
| * | ? | CP009273 | 2436000 = | 271 (0.650) | 17 (0.050) | 8/94 | NT | 6.8% | coding (758/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | 2436103 = | 239 (0.690) | coding (861/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | = 2436008 | 308 (0.740) | 16 (0.050) | 7/94 | NT | 6.0% | coding (766/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | = 2436093 | 239 (0.690) | coding (851/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | = 2502173 | 263 (0.630) | 15 (0.040) | 8/92 | NT | 7.0% | coding (733/966 nt) | glk | glucokinase |
| ? | CP009273 | = 2502211 | 180 (0.530) | coding (695/966 nt) | glk | glucokinase | |||||
| * | ? | CP009273 | = 2548559 | NA (NA) | 6 (0.020) | 4/92 | NT | NA | noncoding (9/24 nt) | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2548565 | NA (NA) | noncoding (15/24 nt) | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2564003 = | 144 (0.350) | 9 (0.030) | 7/94 | NT | 5.7% | coding (1108/1404 nt) | eutE | aldehyde oxidoreductase, ethanolamine utilization protein |
| ? | CP009273 | 2564657 = | 177 (0.510) | coding (454/1404 nt) | eutE | aldehyde oxidoreductase, ethanolamine utilization protein | |||||
| * | ? | CP009273 | = 2691481 | 433 (1.040) | 25 (0.070) | 7/100 | NT | 5.9% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 410 (1.110) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
| * | ? | CP009273 | 2724434 = | 426 (1.030) | 65 (0.180) +AAGCTG |
5/100 | NT | 14.6% | noncoding (83/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | = 4028969 | NA (NA) | noncoding (79/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 2724439 = | 360 (0.870) | 100 (0.280) +ACAGCTT |
7/98 | NT | 24.1% | noncoding (78/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | 3422039 = | NA (NA) | noncoding (83/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | 2747582 = | 392 (0.950) | 26 (0.070) | 5/94 | NT | 8.2% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 252 (0.720) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
| * | ? | CP009273 | = 2787501 | NA (NA) | 6 (0.020) | 4/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2787742 = | 456 (1.100) | 33 (0.090) | 12/96 | NT | 8.1% | coding (131/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| ? | CP009273 | 2787778 = | 356 (1.000) | coding (167/1401 nt) | gabP | gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2845465 = | 321 (0.770) | 26 (0.070) | 12/96 | NT | 7.6% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 353 (0.990) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
| * | ? | CP009273 | 2925176 = | NA (NA) | 7 (0.020) | 5/92 | NT | NA | noncoding (1/30 nt) | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2925206 = | NA (NA) | intergenic (+37/+18) | ygdG/fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase | |||||
| * | ? | CP009273 | 2930783 = | NA (NA) | 10 (0.030) | 5/90 | NT | NA | intergenic (+65/‑14) | fucI/fucK | L‑fucose isomerase/L‑fuculokinase |
| ? | CP009273 | 2930811 = | NA (NA) | coding (15/1449 nt) | fucK | L‑fuculokinase | |||||
| * | ? | CP009273 | = 2974100 | NA (NA) | 8 (0.020) | 6/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3031308 = | 401 (0.970) | 21 (0.060) | 10/98 | NT | 7.4% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 176 (0.490) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
| * | ? | CP009273 | 3143910 = | NA (NA) | 4 (0.010) | 3/90 | NT | NA | intergenic (+5/+267) | yghA/exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
| ? | CP009273 | 3143939 = | NA (NA) | noncoding (27/255 nt) | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | |||||
| * | ? | CP009273 | = 3147712 | 307 (0.740) | 19 (0.050) | 9/94 | NT | 6.3% | coding (866/957 nt) | yqhC | transcriptional activator of yqhD |
| ? | CP009273 | = 3147725 | 307 (0.880) | coding (853/957 nt) | yqhC | transcriptional activator of yqhD | |||||
| * | ? | CP009273 | = 3202572 | 282 (0.680) | 12 (0.040) | 4/92 | NT | 5.6% | coding (1190/1464 nt) | ttdT | L‑tartrate/succinate antiporte |
| ? | CP009273 | = 3202615 | 170 (0.500) | coding (1233/1464 nt) | ttdT | L‑tartrate/succinate antiporte | |||||
| * | ? | CP009273 | 3215213 = | 259 (0.620) | 16 (0.050) | 6/96 | NT | 6.3% | coding (389/984 nt) | ebgR | transcriptional repressor |
| ? | CP009273 | 3215274 = | 250 (0.700) | coding (450/984 nt) | ebgR | transcriptional repressor | |||||
| * | ? | CP009273 | = 3348965 | 378 (0.910) | 19 (0.050) | 12/96 | NT | 5.3% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 359 (1.010) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | CP009273 | 3375198 = | 413 (1.000) | 26 (0.070) | 7/94 | NT | 7.7% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 279 (0.800) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | CP009273 | = 3385586 | 174 (0.420) | 11 (0.030) | 7/98 | NT | 6.7% | noncoding (152/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | = 3385603 | NA (NA) | noncoding (169/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
| * | ? | CP009273 | 3385620 = | NA (NA) | 4 (0.010) | 3/102 | NT | NA | noncoding (186/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | 3385646 = | NA (NA) | noncoding (212/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
| * | ? | CP009273 | 3416786 = | NA (NA) | 3 (0.010) | 3/102 | NT | NA | noncoding (116/120 nt) | rrfF | 5S ribosomal RNA of rrnD operon |
| ? | CP009273 | 3417144 = | NA (NA) | noncoding (3/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | = 3487124 | NA (NA) | 17 (0.050) | 7/96 | NT | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3487134 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3509341 = | 614 (1.480) | 33 (0.090) | 8/94 | NT | 7.2% | intergenic (‑69/+38) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring |
| ? | CP009273 | 3509369 = | 330 (0.950) | intergenic (‑97/+10) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | = 3538010 | 291 (0.700) | 20 (0.060) | 12/94 | NT | 7.3% | coding (194/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase |
| ? | CP009273 | = 3538051 | 260 (0.750) | coding (153/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase | |||||
| * | ? | CP009273 | 3556960 = | NA (NA) | 8 (0.020) | 6/98 | NT | NA | noncoding (19/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4460278 | NA (NA) | noncoding (81/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 3572747 | 633 (1.530) | 29 (0.090) | 8/92 | NT | 5.8% | coding (259/696 nt) | yhhW | quercetinase activity in vitro |
| ? | CP009273 | = 3572830 | 430 (1.260) | coding (176/696 nt) | yhhW | quercetinase activity in vitro | |||||
| * | ? | CP009273 | = 3613129 | NA (NA) | 10 (0.030) | 6/106 | NT | NA | coding (578/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613200 | NA (NA) | coding (649/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3613137 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | coding (586/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613192 | NA (NA) | coding (641/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3613276 = | NA (NA) | 18 (0.050) | 11/106 | NT | NA | coding (725/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3613329 = | NA (NA) | coding (778/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3614731 = | NA (NA) | 7 (0.020) | 6/98 | NT | 100% | coding (2180/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3614737 = | 0 (0.000) | coding (2186/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3614794 | NA (NA) | 4 (0.010) | 3/106 | NT | 100% | coding (2243/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3614820 | 0 (0.000) | coding (2269/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3615265 | NA (NA) | 5 (0.010) | 3/100 | NT | 100% | coding (2714/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3615283 | 0 (0.000) | coding (2732/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3630213 | 274 (0.660) | 37 (0.120) | 16/84 | NT | 15.5% | coding (558/1203 nt) | yhiN | putative oxidoreductase |
| ? | CP009273 | = 3630199 | 197 (0.630) | coding (572/1203 nt) | yhiN | putative oxidoreductase | |||||
| * | ? | CP009273 | = 3669630 | NA (NA) | 13 (0.040) | 9/82 | NT | NA | noncoding (150/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | = 3669631 | NA (NA) | noncoding (151/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 3701734 = | NA (NA) | 13 (0.040) | 7/96 | NT | 8.9% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 155 (0.370) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3701786 | 132 (0.320) | 11 (0.030) | 7/88 | NT | 9.6% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3707970 | 285 (0.690) | 13 (0.040) | 6/94 | NT | 5.1% | coding (1785/2334 nt) | bisC | biotin sulfoxide reductase |
| ? | CP009273 | = 3707984 | 240 (0.690) | coding (1771/2334 nt) | bisC | biotin sulfoxide reductase | |||||
| * | ? | CP009273 | = 3729681 | NA (NA) | 8 (0.030) | 7/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
| * | ? | CP009273 | = 3734448 | NA (NA) | 4 (0.010) | 3/92 | NT | NA | intergenic (+130/+21) | avtA/ysaA | valine‑pyruvate aminotransferase 1/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| ? | CP009273 | = 3734452 | NA (NA) | intergenic (+134/+17) | avtA/ysaA | valine‑pyruvate aminotransferase 1/putative hydrogenase, 4Fe‑4S ferredoxin‑type component | |||||
| * | ? | CP009273 | = 3767664 | NA (NA) | 6 (0.020) | 4/98 | NT | NA | noncoding (69/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3767694 | NA (NA) | noncoding (99/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 3820789 | NA (NA) | 4 (0.010) | 3/98 | NT | NA | intergenic (+138/+31) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter |
| ? | CP009273 | = 3820811 | NA (NA) | intergenic (+160/+9) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter | |||||
| * | ? | CP009273 | 3847022 = | NA (NA) | 6 (0.020) | 4/88 | NT | NA | intergenic (+20/‑260) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| ? | CP009273 | 3847050 = | NA (NA) | intergenic (+48/‑232) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein | |||||
| * | ? | CP009273 | 3851553 = | 472 (1.140) | 38 (0.120) | 11/86 | NT | 10.9% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 259 (0.810) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | CP009273 | 3920778 = | 465 (1.120) | 48 (0.150) | 11/88 | NT | 11.9% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 344 (1.060) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | CP009273 | 3999175 = | 419 (1.010) | 20 (0.060) | 8/96 | NT | 5.5% | intergenic (+84/‑49) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase |
| ? | CP009273 | 3999197 = | 329 (0.930) | intergenic (+106/‑27) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase | |||||
| * | ? | CP009273 | = 4046794 | 524 (1.260) | 27 (0.080) | 11/94 | NT | 5.3% | intergenic (+16/+213) | hemN/yshB | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein |
| ? | CP009273 | = 4046815 | 531 (1.530) | intergenic (+37/+192) | hemN/yshB | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein | |||||
| * | ? | CP009273 | = 4047497 | 314 (0.760) | 36 (0.100) | 11/94 | NT | 11.0% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 321 (0.920) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
| * | ? | CP009273 | 4061067 = | 496 (1.200) | 25 (0.070) | 8/94 | NT | 6.5% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 308 (0.880) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
| * | ? | CP009273 | 4170893 = | 292 (0.700) | 17 (0.050) | 7/90 | NT | 6.1% | intergenic (+40/‑280) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit |
| ? | CP009273 | 4170919 = | 287 (0.860) | intergenic (+66/‑254) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit | |||||
| * | ? | CP009273 | 4190073 = | 457 (1.100) | 46 (0.140) | 16/90 | NT | 11.3% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 353 (1.060) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | CP009273 | 4230085 = | NA (NA) | 12 (0.030) | 8/98 | NT | NA | noncoding (1/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4230118 = | NA (NA) | noncoding (34/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 4306574 = | 181 (0.440) | 10 (0.030) | 8/98 | NT | 6.4% | coding (462/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | CP009273 | 4306632 = | 133 (0.370) | coding (404/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||
| * | ? | CP009273 | = 4308345 | 462 (1.110) | 23 (0.070) | 8/94 | NT | 6.2% | coding (237/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| ? | CP009273 | = 4308403 | 306 (0.880) | coding (179/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein | |||||
| * | ? | CP009273 | 4328027 = | 212 (0.510) | 18 (0.050) | 7/96 | NT | 6.9% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 302 (0.850) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
| * | ? | CP009273 | 4375165 = | 499 (1.200) | 22 (0.070) | 9/90 | NT | 6.2% | intergenic (+7/‑45) | yjeM/yjeN | putative transporter/uncharacterized protein |
| ? | CP009273 | 4375192 = | 263 (0.790) | intergenic (+34/‑18) | yjeM/yjeN | putative transporter/uncharacterized protein | |||||
| * | ? | CP009273 | = 4382219 | 197 (0.480) | 7 (0.020) | 3/96 | NT | 5.9% | noncoding (43/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382314 | 54 (0.150) | noncoding (26/76 nt) | glyX | tRNA‑Gly | |||||
| * | ? | CP009273 | = 4382322 | 109 (0.260) | 9 (0.030) | 7/96 | NT | 7.2% | noncoding (34/76 nt) | glyX | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 138 (0.390) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
| * | ? | CP009273 | 4388394 = | 349 (0.840) | 18 (0.050) | 8/100 | NT | 5.9% | coding (1166/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | CP009273 | 4388416 = | 261 (0.700) | coding (1188/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
| * | ? | CP009273 | 4440765 = | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (5/85 nt) | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 4440795 = | NA (NA) | noncoding (35/85 nt) | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 4506708 = | 303 (0.730) | 22 (0.060) | 10/94 | NT | 8.8% | coding (827/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | CP009273 | 4506742 = | 204 (0.590) | coding (793/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | CP009273 | 4512275 = | 358 (0.860) | 24 (0.070) | 11/92 | NT | 7.0% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 340 (1.000) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | CP009273 | 4532499 = | 106 (0.260) | 17 (0.050) | 8/94 | NT | 11.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 178 (0.510) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 4538708 | 416 (1.000) | 20 (0.060) | 8/94 | NT | 5.8% | coding (84/903 nt) | fimH | minor component of type 1 fimbriae |
| ? | CP009273 | = 4538723 | 300 (0.860) | coding (99/903 nt) | fimH | minor component of type 1 fimbriae | |||||
| * | ? | CP009273 | = 4548130 | 344 (0.830) | 17 (0.050) | 4/88 | NT | 5.7% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 293 (0.900) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | CP009273 | 4583141 = | NA (NA) | 11 (0.030) | 7/90 | NT | NA | intergenic (+12/+37) | tsr/yjjL | methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter |
| ? | CP009273 | 4583171 = | NA (NA) | intergenic (+42/+7) | tsr/yjjL | methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter | |||||
| * | ? | CP009273 | 4586926 = | NA (NA) | 6 (0.020) | 4/88 | NT | NA | noncoding (13/39 nt) | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4586955 = | NA (NA) | intergenic (+126/+12) | yjjN/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferases I and II | |||||