breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	26,837:1	+A	8.5%	intergenic (+33/+152)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	26,844	A→T	9.4%	intergenic (+40/+145)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	27,581	C→T	5.1%	intergenic (‑428/+18)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	27,584	A→G	5.7%	intergenic (‑431/+15)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	36,169	G→T	7.1%	intergenic (+54/+29)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,171	A→T	6.5%	intergenic (+56/+27)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,172	A→T	6.8%	intergenic (+57/+26)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,174	A→C	6.8%	intergenic (+59/+24)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	45,680	C→G	5.6%	intergenic (‑156/+47)	cadA‑I ← / ← PP_0042	cadmium translocating P‑type ATPase/hypothetical protein
RA	58,747	T→A	15.0%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	15.0%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	68,340	G→T	7.5%	intergenic (+28/+147)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,342	A→T	7.7%	intergenic (+30/+145)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,344	A→C	7.4%	intergenic (+32/+143)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	85,066	T→C	8.2%	intergenic (+44/+86)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,074	A→G	8.4%	intergenic (+52/+78)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,077	T→G	8.3%	intergenic (+55/+75)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,078:1	+T	8.5%	intergenic (+56/+74)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,081	T→G	10.6%	intergenic (+59/+71)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,088	C→A	7.4%	intergenic (+66/+64)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,091	Δ1 bp	8.0%	intergenic (+69/+61)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,093	C→A	8.7%	intergenic (+71/+59)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,096	C→T	8.3%	intergenic (+74/+56)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,104	G→A	6.8%	intergenic (+82/+48)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	90,358	A→G	7.6%	intergenic (+33/+89)	PP_0079 → / ← PP_0080	transcriptional regulator/hypothetical protein
RA	100,747	A→T	5.1%	M111K (ATG→AAG)	PP_0095 ←	hypothetical protein
RA	101,803	A→T	5.1%	K208M (AAG→ATG)	prlC →	oligopeptidase A
RA	117,260	A→C	6.6%	intergenic (+40/+54)	PP_0111 → / ← metQ	electron transport protein SCO1/SenC/methionine ABC transporter substrate‑binding protein
RA	126,115	A→G	6.2%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	6.1%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	143,591	T→C	5.3%	L14P (CTG→CCG)	PP_0136 →	hypothetical protein
RA	143,594	T→C	5.6%	L15P (CTG→CCG) ‡	PP_0136 →	hypothetical protein
RA	143,595	G→C	5.4%	L15L (CTG→CTC) ‡	PP_0136 →	hypothetical protein
RA	143,596	G→A	5.3%	G16S (GGC→AGC)	PP_0136 →	hypothetical protein
RA	143,599	G→A	5.3%	G17S (GGC→AGC)	PP_0136 →	hypothetical protein
RA	143,604	C→G	5.2%	S18R (AGC→AGG)	PP_0136 →	hypothetical protein
RA	146,127	T→A	6.2%	intergenic (+32/‑116)	gltP → / → PP_0138	glutamate/aspartate‑proton DAACS transporter/membrane protein
RA	146,128	T→A	5.6%	intergenic (+33/‑115)	gltP → / → PP_0138	glutamate/aspartate‑proton DAACS transporter/membrane protein
RA	161,733	A→C	14.6%	intergenic (‑228/+18)	PP_0152 ← / ← PP_0153	hypothetical protein/hypothetical protein
RA	170,838	G→T	5.1%	intergenic (+19/‑551)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,839	T→G	7.9%	intergenic (+20/‑550)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,840	C→A	5.3%	intergenic (+21/‑549)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,841	A→C	7.5%	intergenic (+22/‑548)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	181,805	T→C	7.3%	intergenic (+19/‑87)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,811	C→T	6.8%	intergenic (+25/‑81)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,812	A→G	7.5%	intergenic (+26/‑80)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,818	G→A	6.8%	intergenic (+32/‑74)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	182,034	G→A	7.9%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	7.7%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	7.7%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	188,837	C→T	100%	R316C (CGC→TGC)	PP_0165 →	GGDEF domain‑containing protein
RA	195,559	C→A	24.5%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	9.2%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	9.3%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	39.1%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	5.9%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	18.4%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	20.3%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	22.6%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	24.7%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	11.6%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	22.5%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	5.9%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	12.7%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	7.2%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,185	C→T	6.2%	T897T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	11.9%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	16.8%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	18.8%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	14.0%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	8.2%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	212,034	T→A	5.2%	L5847Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	220,561	A→T	7.0%	intergenic (+18/‑110)	PP_0168 → / → PP_5431	putative surface adhesion protein/hypothetical protein
RA	220,562	C→G	7.1%	intergenic (+19/‑109)	PP_0168 → / → PP_5431	putative surface adhesion protein/hypothetical protein
RA	226,659	T→C	6.2%	intergenic (+66/‑67)	PP_0174 → / → PP_0175	hypothetical protein/transcriptional regulator
RA	226,661	A→T	6.7%	intergenic (+68/‑65)	PP_0174 → / → PP_0175	hypothetical protein/transcriptional regulator
RA	226,663	G→A	6.5%	intergenic (+70/‑63)	PP_0174 → / → PP_0175	hypothetical protein/transcriptional regulator
RA	233,545	C→T	100%	G548G (GGC→GGT)	PP_0180 →	cytochrome c family protein
RA	233,832	A→T	8.7%	intergenic (+20/+43)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	233,833	C→G	8.8%	intergenic (+21/+42)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	233,834	A→T	8.9%	intergenic (+22/+41)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	235,390	G→A	5.7%	intergenic (+87/+38)	PP_0183 → / ← argH	glutathione S‑transferase/argininosuccinate lyase
RA	277,240	A→T	5.9%	intergenic (‑73/+24)	PP_0223 ← / ← PP_0224	DszC family monooxygenase/DszC family monooxygenase
RA	277,241	A→T	5.9%	intergenic (‑74/+23)	PP_0223 ← / ← PP_0224	DszC family monooxygenase/DszC family monooxygenase
RA	277,242	A→T	6.3%	intergenic (‑75/+22)	PP_0223 ← / ← PP_0224	DszC family monooxygenase/DszC family monooxygenase
RA	284,587	T→A	12.1%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,588	T→A	12.4%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	295,759	T→G	5.9%	intergenic (+106/+36)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	316,030	A→C	5.0%	intergenic (+42/+41)	cysQ → / ← PP_0262	3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
RA	322,135	G→A	21.9%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,142	T→C	21.2%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	326,067	C→A	7.1%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	326,070	T→G	7.6%	A555A (GCA→GCC)	PP_0269 ←	glutamate synthase large subunit
RA	336,291	T→A	5.1%	intergenic (+136/+257)	PP_0278 → / ← PP_0279	hypothetical protein/hypothetical protein
RA	336,292	T→A	5.1%	intergenic (+137/+256)	PP_0278 → / ← PP_0279	hypothetical protein/hypothetical protein
RA	336,293	T→A	5.1%	intergenic (+138/+255)	PP_0278 → / ← PP_0279	hypothetical protein/hypothetical protein
RA	337,812	A→G	29.4%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819:1	+A	28.6%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	A→C	28.3%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	C→G	27.0%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,828	G→T	27.1%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,830	Δ1 bp	26.7%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,839	C→T	28.5%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	341,299	T→C	6.0%	intergenic (‑190/‑188)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	341,303	G→T	5.6%	intergenic (‑194/‑184)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	341,304	C→G	5.6%	intergenic (‑195/‑183)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	341,305	A→C	5.4%	intergenic (‑196/‑182)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	341,309	G→A	5.7%	intergenic (‑200/‑178)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	343,610	T→A	5.6%	intergenic (‑163/‑77)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,611	G→C	5.7%	intergenic (‑164/‑76)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,612	T→A	5.6%	intergenic (‑165/‑75)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	344,035	A→G	6.1%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,044	Δ1 bp	9.6%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,048:1	+T	8.9%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	353,105	T→G	7.7%	intergenic (+69/+49)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	356,673	G→C	5.3%	V5V (GTG→GTC)	tdcG‑I →	L‑serine dehydratase
RA	358,088	A→G	25.6%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	C→T	24.4%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,093	T→C	25.8%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	G→A	26.5%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,097	A→G	26.1%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,099	C→T	27.3%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	370,415	C→G	5.6%	R147G (CGC→GGC) ‡	PP_0309 →	hypothetical protein
RA	370,417	C→G	5.6%	R147R (CGC→CGG) ‡	PP_0309 →	hypothetical protein
RA	372,647	A→C	5.7%	intergenic (+64/‑115)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,649	C→G	5.7%	intergenic (+66/‑113)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,650	A→T	5.6%	intergenic (+67/‑112)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,652	T→A	5.8%	intergenic (+69/‑110)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,654	A→G	5.8%	intergenic (+71/‑108)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,660	C→G	6.0%	intergenic (+77/‑102)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,666	C→T	5.6%	intergenic (+83/‑96)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,668	T→A	5.4%	intergenic (+85/‑94)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,670	A→T	5.5%	intergenic (+87/‑92)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,671	C→G	5.5%	intergenic (+88/‑91)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,673	G→T	5.5%	intergenic (+90/‑89)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	383,420	A→G	6.0%	intergenic (+77/‑106)	PP_0319 → / → PP_0320	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	385,478	A→C	6.6%	intergenic (+15/+20)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	385,479	C→G	6.9%	intergenic (+16/+19)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	395,849	C→A	5.7%	intergenic (+28/+176)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,850	A→T	6.6%	intergenic (+29/+175)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,851	T→G	6.6%	intergenic (+30/+174)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	403,270	T→A	5.3%	intergenic (‑70/+99)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	413,107	C→G	5.1%	A686A (GCC→GCG)	glnE →	glutamate‑ammonia‑ligase adenylyltransferase
RA	413,108	C→G	5.0%	R687G (CGC→GGC)	glnE →	glutamate‑ammonia‑ligase adenylyltransferase
RA	414,025	T→G	9.0%	intergenic (+42/‑161)	glnE → / → waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
RA	414,027	C→T	8.7%	intergenic (+44/‑159)	glnE → / → waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
RA	427,956	A→T	5.6%	intergenic (‑155/+97)	PP_0350 ← / ← PP_0351	ferrichrome‑iron receptor/transmembrane sensor
RA	432,996	A→T	6.3%	intergenic (+18/+29)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,997	A→T	6.6%	intergenic (+19/+28)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,998	A→T	6.9%	intergenic (+20/+27)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	445,089	T→G	13.6%	intergenic (+59/‑229)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,090	G→A	11.6%	intergenic (+60/‑228)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,091	C→G	11.9%	intergenic (+61/‑227)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,093	T→C	12.5%	intergenic (+63/‑225)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,098	T→C	18.6%	intergenic (+68/‑220)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,108	A→T	19.6%	intergenic (+78/‑210)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,110	T→G	16.1%	intergenic (+80/‑208)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,118	G→A	16.1%	intergenic (+88/‑200)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,123	G→A	13.9%	intergenic (+93/‑195)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,125	C→G	11.9%	intergenic (+95/‑193)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,126	T→C	12.8%	intergenic (+96/‑192)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,127	C→A	12.3%	intergenic (+97/‑191)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	464,323	G→C	8.4%	H259Q (CAC→CAG) ‡	davB ←	lysine 2‑monooxygenase
RA	464,324	T→A	8.4%	H259L (CAC→CTC) ‡	davB ←	lysine 2‑monooxygenase
RA	464,325	G→C	8.3%	H259D (CAC→GAC) ‡	davB ←	lysine 2‑monooxygenase
RA	467,101	A→G	7.8%	intergenic (‑31/+22)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	467,104	C→T	7.6%	intergenic (‑34/+19)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	471,069	T→C	5.1%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	476,133	A→T	100%	Q141L (CAG→CTG)	tsaD →	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
RA	478,316	A→T	7.5%	intergenic (+61/+49)	PP_0393 → / ← cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	478,328	T→G	8.3%	intergenic (+73/+37)	PP_0393 → / ← cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	478,339	G→T	5.4%	intergenic (+84/+26)	PP_0393 → / ← cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	503,595	T→C	6.2%	F208S (TTT→TCT) ‡	PP_0414 →	polyamine ABC transporter permease
RA	503,596	T→A	6.3%	F208L (TTT→TTA) ‡	PP_0414 →	polyamine ABC transporter permease
RA	503,597	G→A	5.9%	D209N (GAC→AAC)	PP_0414 →	polyamine ABC transporter permease
RA	503,816	A→G	5.1%	intergenic (+16/‑135)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,828	Δ1 bp	11.6%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,834	A→T	15.3%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,835	A→T	15.3%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,840:1	+C	14.6%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	524,174	C→G	6.3%	intergenic (+38/‑778)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,178	A→T	9.6%	intergenic (+42/‑774)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,352	G→C	8.3%	intergenic (+216/‑600)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,355	G→C	7.7%	intergenic (+219/‑597)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	539,661	A→G	100%	D679G (GAC→GGC)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	546,005	G→A	6.5%	intergenic (+42/‑31)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,010	G→T	6.3%	intergenic (+47/‑26)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,011	A→T	5.9%	intergenic (+48/‑25)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,012	A→C	6.0%	intergenic (+49/‑24)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,017	T→C	6.0%	intergenic (+54/‑19)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	550,552	C→G	6.1%	intergenic (+30/‑112)	tufB → / → rpsJ	elongation factor Tu‑B/30S ribosomal protein S10
RA	564,380:1	+A	7.1%	intergenic (+29/‑144)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,385	Δ1 bp	7.1%	intergenic (+34/‑139)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	566,623	C→T	5.5%	intergenic (+32/+41)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,627	A→G	5.4%	intergenic (+36/+37)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,628	T→A	5.3%	intergenic (+37/+36)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,629	C→T	5.4%	intergenic (+38/+35)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,633	A→G	5.5%	intergenic (+42/+31)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	571,620	G→A	5.8%	intergenic (+43/+48)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	571,621	T→C	6.2%	intergenic (+44/+47)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	593,437	A→C	6.4%	E391A (GAG→GCG)	PP_0503 →	MFS transporter
RA	648,250	A→T	12.9%	intergenic (+16/+75)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,290	A→C	7.6%	intergenic (+56/+35)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	668,105	G→C	8.3%	intergenic (+66/+86)	yfhM → / ← PP_0571	lipoprotein/membrane protein
RA	675,590	A→T	7.4%	C38S (TGC→AGC)	PP_0577 ←	hypothetical protein
RA	675,592	C→G	7.1%	G37A (GGC→GCC)	PP_0577 ←	hypothetical protein
RA	675,594	A→T	7.1%	A36A (GCT→GCA)	PP_0577 ←	hypothetical protein
RA	697,217	T→C	7.4%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	10.1%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,231	C→G	10.1%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,242	G→A	8.8%	intergenic (+166/‑585)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,725	A→G	50.3%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,767	T→G	7.1%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,768	A→T	7.1%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,769	C→A	7.1%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	713,099	A→G	5.7%	I29V (ATC→GTC) ‡	lspA →	lipoprotein signal peptidase
RA	713,100	T→A	5.6%	I29N (ATC→AAC) ‡	lspA →	lipoprotein signal peptidase
RA	713,101	C→T	5.5%	I29I (ATC→ATT) ‡	lspA →	lipoprotein signal peptidase
RA	718,461	T→A	8.7%	intergenic (+28/+49)	thiO → / ← PP_0613	FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein
RA	718,462	A→C	6.2%	intergenic (+29/+48)	thiO → / ← PP_0613	FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein
RA	733,648	A→T	5.9%	intergenic (+19/‑28)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,649	A→T	6.1%	intergenic (+20/‑27)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,851	G→A	5.7%	intergenic (+18/+173)	PP_t11 → / ← ndh	tRNA‑Lys/NADH dehydrogenase
RA	733,852	C→T	5.7%	intergenic (+19/+172)	PP_t11 → / ← ndh	tRNA‑Lys/NADH dehydrogenase
RA	733,853	A→G	5.7%	intergenic (+20/+171)	PP_t11 → / ← ndh	tRNA‑Lys/NADH dehydrogenase
RA	733,854	T→C	5.8%	intergenic (+21/+170)	PP_t11 → / ← ndh	tRNA‑Lys/NADH dehydrogenase
RA	747,421	C→T	5.4%	intergenic (‑545/‑249)	PP_0638 ← / → PP_5448	transposase/hypothetical protein
RA	772,181	T→C	7.7%	intergenic (+39/‑160)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,182	T→G	7.7%	intergenic (+40/‑159)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,185	C→A	7.8%	intergenic (+43/‑156)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,186	G→A	7.8%	intergenic (+44/‑155)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	788,584	C→A	6.5%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	A→T	6.5%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,587	A→T	6.5%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,589	T→G	7.4%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,599	T→C	5.2%	intergenic (+46/‑167)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	797,512	G→A	5.8%	intergenic (+33/‑44)	PP_0682 → / → PP_0683	inner membrane protein/hypothetical protein
RA	798,665	C→A	6.3%	intergenic (+17/+10)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	798,666	C→G	6.5%	intergenic (+18/+9)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	798,667	T→G	11.4%	intergenic (+19/+8)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	802,773	T→C	6.5%	intergenic (+28/‑58)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,774	C→A	6.9%	intergenic (+29/‑57)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,775	T→G	6.5%	intergenic (+30/‑56)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,776	G→A	6.3%	intergenic (+31/‑55)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	813,203	T→G	6.1%	intergenic (+107/+24)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,204	T→C	6.1%	intergenic (+108/+23)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,205	G→A	6.1%	intergenic (+109/+22)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,206	C→A	6.1%	intergenic (+110/+21)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	863,383	A→C	19.9%	S172R (AGC→CGC)	hemH →	ferrochelatase
RA	863,901	T→A	8.5%	intergenic (+15/+21)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	863,902	T→A	8.1%	intergenic (+16/+20)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	863,903	T→A	8.2%	intergenic (+17/+19)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	867,937	C→T	5.4%	intergenic (+32/+145)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	867,950	A→C	9.9%	intergenic (+45/+132)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	867,974	A→C	8.6%	intergenic (+69/+108)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	867,985	T→G	14.7%	intergenic (+80/+97)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	868,055	A→C	6.1%	intergenic (+150/+27)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	895,201	G→C	6.8%	intergenic (+38/+26)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,204	T→C	7.5%	intergenic (+41/+23)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,210	G→C	7.9%	intergenic (+47/+17)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,213	G→C	8.7%	intergenic (+50/+14)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,219	G→A	8.4%	intergenic (+56/+8)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,222	G→C	7.5%	intergenic (+59/+5)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	919,675	G→C	6.0%	intergenic (‑143/+48)	PP_5458 ← / ← PP_0800	hypothetical protein/hypothetical protein
RA	924,322	T→C	5.1%	T292A (ACG→GCG)	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	924,323	C→G	5.2%	A291A (GCG→GCC) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	924,324	G→A	5.2%	A291V (GCG→GTG) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	955,079	Δ1 bp	5.3%	intergenic (+30/‑283)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,083	T→A	5.3%	intergenic (+34/‑279)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,085:1	+G	5.3%	intergenic (+36/‑277)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	A→G	25.9%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,154	G→A	24.1%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	T→A	23.5%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,156	T→C	25.1%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,158	C→T	25.7%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	964,480	T→C	6.4%	L95L (TTG→CTG) ‡	phnE →	phosphonate ABC transporter permease
RA	964,481	T→A	6.2%	L95* (TTG→TAG) ‡	phnE →	phosphonate ABC transporter permease
RA	964,484	T→A	5.8%	L96Q (CTG→CAG) ‡	phnE →	phosphonate ABC transporter permease
RA	964,485	G→A	5.4%	L96L (CTG→CTA) ‡	phnE →	phosphonate ABC transporter permease
RA	968,878	G→T	6.8%	intergenic (‑308/+23)	PP_0831 ← / ← PP_t68	hypothetical protein/tRNA‑Leu
RA	968,881	A→C	9.4%	intergenic (‑311/+20)	PP_0831 ← / ← PP_t68	hypothetical protein/tRNA‑Leu
RA	972,118	T→A	5.2%	L136Q (CTG→CAG)	secD →	protein translocase subunit SecD
RA	972,121	T→A	5.1%	L137Q (CTG→CAG)	secD →	protein translocase subunit SecD
RA	975,193	G→C	6.6%	intergenic (+39/+130)	ycfJ → / ← suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA	992,866	G→T	5.1%	intergenic (+21/‑131)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	992,868	A→T	5.2%	intergenic (+23/‑129)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	994,950	T→A	6.2%	intergenic (+26/+99)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	994,951	T→A	6.2%	intergenic (+27/+98)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	997,736	A→G	5.0%	intergenic (‑138/+94)	PP_0860 ← / ← PP_0861	sulfite reductase flavoprotein subunit/outer membrane ferric siderophore receptor
RA	1,011,323:1	+T	100%	intergenic (‑258/+192)	PP_0871 ← / ← SBRG_Ecoli_galM	glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM
RA	1,018,146	T→A	8.4%	intergenic (+22/+109)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,180	A→T	28.4%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,186	C→A	35.0%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,187	A→T	35.6%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,193	G→C	39.0%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,194	G→C	40.1%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,200	A→T	39.9%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,201	T→G	41.4%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,207	A→T	33.1%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,238	C→T	9.2%	intergenic (+114/+17)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,241	T→A	5.0%	intergenic (+117/+14)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,243	G→A	5.9%	intergenic (+119/+12)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,036,871	T→A	5.1%	L5M (TTG→ATG) ‡	PP_0889 →	hypothetical protein
RA	1,036,872	T→A	5.0%	L5* (TTG→TAG) ‡	PP_0889 →	hypothetical protein
RA	1,050,210	T→C	5.4%	intergenic (+31/+75)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,050,214	G→A	5.5%	intergenic (+35/+71)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,050,217	T→C	5.5%	intergenic (+38/+68)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,050,221	G→A	5.9%	intergenic (+42/+64)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,075,214	G→C	15.9%	intergenic (+62/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,075,217	G→C	16.2%	intergenic (+65/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,107,601	A→C	10.0%	K30T (AAG→ACG)	ttg2E →	toluene‑tolerance protein
RA	1,131,605	T→G	11.0%	intergenic (‑105/+45)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,135,093	G→T	6.2%	intergenic (‑193/+111)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,135,094	C→G	6.2%	intergenic (‑194/+110)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,135,095	A→C	6.0%	intergenic (‑195/+109)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,135,147	A→T	5.9%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,150,388	C→T	16.0%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,150,395	G→A	18.4%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,150,396	T→C	18.8%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,150,403	A→G	16.3%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,154,944	G→C	7.3%	intergenic (‑236/+21)	PP_1008 ← / ← gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
RA	1,161,350	G→A	5.7%	intergenic (+98/‑118)	PP_1013 → / → yihS	sensor histidine kinase/aldose‑ketose isomerase
RA	1,187,840	T→A	5.8%	intergenic (+52/+42)	tadA → / ← mltF	tRNA adenosine(34) deaminase TadA/membrane‑bound lytic murein transglycosylase F
RA	1,189,503	C→G	5.1%	intergenic (‑164/‑248)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,516	A→T	6.0%	intergenic (‑177/‑235)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,523	A→G	6.8%	intergenic (‑184/‑228)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,540	G→C	21.5%	intergenic (‑201/‑211)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,543	G→C	21.2%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,206,960	T→G	7.4%	W137G (TGG→GGG)	xcpW →	type II secretion pathway protein XcpW
RA	1,230,435	A→C	5.4%	intergenic (‑56/+90)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,230,436	A→T	5.0%	intergenic (‑57/+89)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,238,724	G→T	5.1%	intergenic (‑85/+17)	glpR ← / ← glpK	DNA‑binding transcriptional repressor GlpR/glycerol kinase
RA	1,246,917:1	+T	8.3%	intergenic (+27/+31)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,246,922	Δ1 bp	8.3%	intergenic (+32/+26)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,248,693	T→A	5.6%	intergenic (+27/+72)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,248,694	T→C	5.6%	intergenic (+28/+71)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,248,695	C→G	6.1%	intergenic (+29/+70)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,248,696	G→A	5.7%	intergenic (+30/+69)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,248,697	T→A	5.7%	intergenic (+31/+68)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,254,704	A→T	5.3%	intergenic (+22/+49)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,254,706	C→G	5.3%	intergenic (+24/+47)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,254,708	A→T	5.3%	intergenic (+26/+45)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,299,069	C→T	6.4%	intergenic (+15/+25)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,299,070	A→T	6.1%	intergenic (+16/+24)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,299,071	A→G	6.1%	intergenic (+17/+23)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,299,968	Δ1 bp	7.3%	intergenic (+29/+41)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,299,973	T→A	7.9%	intergenic (+34/+36)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,299,976	T→A	7.9%	intergenic (+37/+33)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,299,980:1	+T	6.7%	intergenic (+41/+29)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,316,689	T→A	13.3%	intergenic (‑202/+76)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,316,694	T→A	16.2%	intergenic (‑207/+71)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,316,697	G→A	7.0%	intergenic (‑210/+68)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,316,710	G→C	13.5%	intergenic (‑223/+55)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,316,714	T→A	6.1%	intergenic (‑227/+51)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,316,715	T→A	6.1%	intergenic (‑228/+50)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,316,733	T→G	6.1%	intergenic (‑246/+32)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,332,076	C→T	54.9%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,349,055	G→T	7.5%	P13T (CCT→ACT)	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,349,062	G→C	7.8%	A10A (GCC→GCG) ‡	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,349,063	G→C	7.6%	A10G (GCC→GGC) ‡	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,349,070	A→C	7.9%	C8G (TGC→GGC)	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,352,119	T→A	8.1%	intergenic (‑272/+132)	udh ← / ← galP‑I	uronate dehydrogenase/porin‑like protein
RA	1,353,593	A→C	8.5%	intergenic (‑104/+650)	galP‑I ← / ← PP_1174	porin‑like protein/hypothetical protein
RA	1,355,456	T→A	5.3%	K11N (AAA→AAT) ‡	PP_1176 ←	hypothetical protein
RA	1,355,457	T→A	5.1%	K11I (AAA→ATA) ‡	PP_1176 ←	hypothetical protein
RA	1,360,985	A→G	5.1%	intergenic (+297/‑95)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,361,360	G→C	5.7%	G94A (GGC→GCC)	PP_1181 →	two‑component system response regulator
RA	1,372,799	A→C	11.6%	E92D (GAA→GAC)	PP_1193 →	membrane protein
RA	1,381,276	A→T	10.6%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,381,277	G→C	10.6%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,381,278	A→T	10.7%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,388,209	A→T	8.0%	L16Q (CTG→CAG)	PP_1204 ←	lipoprotein
RA	1,397,870	T→C	14.3%	intergenic (+85/‑101)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,872	A→G	14.1%	intergenic (+87/‑99)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,874	G→A	14.5%	intergenic (+89/‑97)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,876:1	+A	14.2%	intergenic (+91/‑95)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,882	C→G	14.6%	intergenic (+97/‑89)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,888	Δ1 bp	15.2%	intergenic (+103/‑83)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,891	T→C	15.0%	intergenic (+106/‑80)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,893	C→T	14.6%	intergenic (+108/‑78)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,895	G→A	14.9%	intergenic (+110/‑76)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,405,827	C→A	5.2%	intergenic (+35/‑134)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,405,829	A→T	5.2%	intergenic (+37/‑132)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,405,831	T→G	5.2%	intergenic (+39/‑130)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,408,545	G→A	20.8%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,408,546	T→C	21.3%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,430,606	T→C	5.0%	intergenic (+52/‑453)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,445,054	T→C	8.9%	intergenic (‑429/‑230)	yveA ← / → PP_1260	aspartate‑proton symporter/transposase
RA	1,445,061	G→T	10.7%	intergenic (‑436/‑223)	yveA ← / → PP_1260	aspartate‑proton symporter/transposase
RA	1,445,062	G→A	10.9%	intergenic (‑437/‑222)	yveA ← / → PP_1260	aspartate‑proton symporter/transposase
RA	1,445,063	T→C	10.9%	intergenic (‑438/‑221)	yveA ← / → PP_1260	aspartate‑proton symporter/transposase
RA	1,445,064	A→C	11.5%	intergenic (‑439/‑220)	yveA ← / → PP_1260	aspartate‑proton symporter/transposase
RA	1,463,073	T→G	5.1%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,463,077	C→A	5.3%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,467,980	A→T	6.5%	intergenic (‑100/+42)	algI ← / ← algL	alginate O‑acetylase AlgI/alginate lyase
RA	1,467,981	A→T	6.7%	intergenic (‑101/+41)	algI ← / ← algL	alginate O‑acetylase AlgI/alginate lyase
RA	1,469,125	T→G	7.6%	M5L (ATG→CTG)	algL ←	alginate lyase
RA	1,469,147	T→G	9.4%	Q476P (CAG→CCG)	algX ←	alginate biosynthesis protein AlgX
RA	1,469,154	T→A	6.2%	T474S (ACC→TCC)	algX ←	alginate biosynthesis protein AlgX
RA	1,469,156	T→G	8.8%	Q473P (CAG→CCG)	algX ←	alginate biosynthesis protein AlgX
RA	1,474,764	A→G	5.1%	V112A (GTG→GCG)	algK ←	alginate biosynthesis protein AlgK
RA	1,474,767	A→T	5.1%	L111Q (CTG→CAG)	algK ←	alginate biosynthesis protein AlgK
RA	1,479,951	T→G	10.7%	intergenic (‑775/+26)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,479,952	C→A	10.8%	intergenic (‑776/+25)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,491,995	A→T	6.8%	intergenic (+55/+75)	yhdZ → / ← degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
RA	1,492,052	C→T	5.0%	intergenic (+112/+18)	yhdZ → / ← degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
RA	1,492,055	A→C	5.4%	intergenic (+115/+15)	yhdZ → / ← degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
RA	1,504,443	T→A	5.3%	intergenic (+64/‑102)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,509,025	T→A	7.3%	intergenic (+34/‑229)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,509,026	T→A	7.7%	intergenic (+35/‑228)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,511,881	A→G	21.8%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,511,885	G→A	23.6%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,511,888	T→C	24.0%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,511,892	C→T	23.0%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,513,036	G→A	7.8%	intergenic (+17/+45)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,513,037	G→T	7.8%	intergenic (+18/+44)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,513,038	A→C	8.0%	intergenic (+19/+43)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,513,039	T→C	7.8%	intergenic (+20/+42)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
MC JC	1,515,769	Δ33 bp	100%	pseudogene (757‑789/1851 nt)	PP_1325 ←	putative lipoprotein
RA	1,525,982	T→A	5.1%	L83* (TTG→TAG)	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,539,870	G→A	7.0%	intergenic (+70/‑113)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,872	T→G	7.5%	intergenic (+72/‑111)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,874	C→T	8.3%	intergenic (+74/‑109)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,880	T→C	13.6%	intergenic (+80/‑103)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,884	C→T	12.8%	intergenic (+84/‑99)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,889	A→G	13.3%	intergenic (+89/‑94)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,893	G→A	12.9%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,899	A→G	10.0%	intergenic (+99/‑84)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,901	C→A	7.5%	intergenic (+101/‑82)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,903	T→C	7.6%	intergenic (+103/‑80)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,549,446	G→T	5.4%	intergenic (+14/+100)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,449	C→T	6.5%	intergenic (+17/+97)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,480	C→A	40.3%	intergenic (+48/+66)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,483	G→C	38.5%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,485	C→G	37.8%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,490	C→G	37.3%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,492	G→C	38.3%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,495	T→G	41.3%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,556,273	G→T	9.2%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,556,276	A→C	8.8%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,560,379	A→C	8.2%	intergenic (+26/+48)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,560,380	T→A	6.4%	intergenic (+27/+47)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,560,381	G→T	6.8%	intergenic (+28/+46)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,560,480	T→C	14.4%	K109E (AAA→GAA)	PP_1366 ←	transcriptional regulator MvaT
RA	1,560,504	T→C	7.4%	N101D (AAC→GAC)	PP_1366 ←	transcriptional regulator MvaT
RA	1,575,407	A→G	6.0%	intergenic (+24/‑164)	pcaF‑I → / → pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
RA	1,596,973	C→A	14.9%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,596,978	T→G	14.8%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,597,595	G→C	10.2%	D67H (GAC→CAC) ‡	PP_1397 →	hypothetical protein
RA	1,597,596	A→C	11.3%	D67A (GAC→GCC) ‡	PP_1397 →	hypothetical protein
RA	1,598,596	C→G	5.4%	Q66H (CAG→CAC)	PP_1399 ←	hypothetical protein
RA	1,599,052	T→C	5.8%	intergenic (‑259/+42)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,599,057	G→T	5.5%	intergenic (‑264/+37)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,599,058	C→G	5.5%	intergenic (‑265/+36)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,599,059	A→C	5.8%	intergenic (‑266/+35)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,599,064	G→A	6.3%	intergenic (‑271/+30)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,603,819	A→G	9.2%	intergenic (‑67/+64)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,822	C→G	9.1%	intergenic (‑70/+61)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,823	T→C	9.2%	intergenic (‑71/+60)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,824	G→A	9.0%	intergenic (‑72/+59)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,825	C→G	9.0%	intergenic (‑73/+58)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,828	C→T	9.0%	intergenic (‑76/+55)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,843	T→G	5.1%	intergenic (‑91/+40)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,627,494	A→G	6.1%	intergenic (+25/+41)	PP_1421 → / ← PP_1422	sensor histidine kinase TctE/hypothetical protein
RA	1,627,495	T→C	6.2%	intergenic (+26/+40)	PP_1421 → / ← PP_1422	sensor histidine kinase TctE/hypothetical protein
RA	1,627,499	C→T	6.5%	intergenic (+30/+36)	PP_1421 → / ← PP_1422	sensor histidine kinase TctE/hypothetical protein
RA	1,627,500	T→G	6.2%	intergenic (+31/+35)	PP_1421 → / ← PP_1422	sensor histidine kinase TctE/hypothetical protein
RA	1,627,501	C→A	6.3%	intergenic (+32/+34)	PP_1421 → / ← PP_1422	sensor histidine kinase TctE/hypothetical protein
RA	1,627,502	A→G	6.2%	intergenic (+33/+33)	PP_1421 → / ← PP_1422	sensor histidine kinase TctE/hypothetical protein
RA	1,627,506	G→A	6.6%	intergenic (+37/+29)	PP_1421 → / ← PP_1422	sensor histidine kinase TctE/hypothetical protein
RA	1,627,507	C→T	6.0%	intergenic (+38/+28)	PP_1421 → / ← PP_1422	sensor histidine kinase TctE/hypothetical protein
RA	1,630,198	G→T	7.1%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,630,199	A→C	15.2%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,637,084	C→T	5.4%	P283S (CCT→TCT) ‡	lepA →	elongation factor 4
RA	1,637,086	T→A	5.2%	P283P (CCT→CCA) ‡	lepA →	elongation factor 4
RA	1,637,088	A→G	5.3%	E284G (GAG→GGG)	lepA →	elongation factor 4
RA	1,638,536	T→G	5.1%	V165G (GTC→GGC)	lepB →	signal peptidase I
RA	1,638,543	C→G	5.3%	G167G (GGC→GGG)	lepB →	signal peptidase I
RA	1,638,545	A→T	5.1%	Q168L (CAG→CTG)	lepB →	signal peptidase I
RA	1,638,547	C→G	5.3%	P169A (CCC→GCC)	lepB →	signal peptidase I
RA	1,640,744	T→A	5.1%	intergenic (+99/‑71)	era → / → recO	GTPase Era/DNA repair protein RecO
RA	1,640,745	T→A	5.3%	intergenic (+100/‑70)	era → / → recO	GTPase Era/DNA repair protein RecO
RA	1,642,306	T→C	7.1%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,316	A→T	12.5%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,317	A→T	12.5%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,327	G→A	7.9%	intergenic (+45/+21)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,644,556	A→G	9.2%	intergenic (‑155/‑156)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,566	C→T	10.8%	intergenic (‑165/‑146)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,567	G→T	10.8%	intergenic (‑166/‑145)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,571	G→A	10.5%	intergenic (‑170/‑141)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,572	T→C	10.0%	intergenic (‑171/‑140)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,576	A→C	11.6%	intergenic (‑175/‑136)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,577	A→G	10.4%	intergenic (‑176/‑135)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,587	C→T	8.4%	intergenic (‑186/‑125)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,647,246	T→C	5.1%	intergenic (‑83/+69)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,255	G→A	9.3%	intergenic (‑92/+60)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,262	G→C	12.9%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,268	G→C	11.7%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,269	C→G	11.8%	intergenic (‑106/+46)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,270	G→C	11.9%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,276	G→C	11.5%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,283	T→C	9.1%	intergenic (‑120/+32)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,292	G→A	6.0%	intergenic (‑129/+23)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,294	C→T	6.1%	intergenic (‑131/+21)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,696,763	T→C	13.2%	intergenic (+39/‑132)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,696,764	C→G	13.6%	intergenic (+40/‑131)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,696,774	C→A	17.8%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,696,777	T→G	17.8%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,696,787	C→G	10.6%	intergenic (+63/‑108)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,696,788	G→A	10.5%	intergenic (+64/‑107)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,708,239	A→G	25.5%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,708,241	G→C	24.1%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,708,243	C→T	25.0%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,709,627	T→G	6.2%	M1M (TTG→GTG) †‡	PP_1499 →	hypothetical protein
RA	1,709,628	T→A	5.7%	M1* (TTG→TAG) †‡	PP_1499 →	hypothetical protein
RA	1,712,218	G→C	10.9%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,221	G→C	11.1%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,717,071	A→T	11.4%	intergenic (+71/‑187)	ppc → / → adk	phosphoenolpyruvate carboxylase/adenylate kinase
RA	1,717,942	T→A	8.7%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,717,943	T→A	8.6%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,730,398	T→G	9.1%	Q65P (CAG→CCG)	PP_1519 ←	lipoprotein
RA	1,731,476	A→T	5.6%	L560Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,731,479	A→T	5.9%	L559Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,785,057	G→A	7.2%	intergenic (+25/+81)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,077	T→A	12.5%	intergenic (+45/+61)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,084	C→A	8.2%	intergenic (+52/+54)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,085	G→T	8.2%	intergenic (+53/+53)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,086	C→T	7.4%	intergenic (+54/+52)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,088	T→C	8.2%	intergenic (+56/+50)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,089	G→A	7.1%	intergenic (+57/+49)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,091	A→G	7.1%	intergenic (+59/+47)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,092	A→C	7.5%	intergenic (+60/+46)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,093	T→G	7.8%	intergenic (+61/+45)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,100	T→A	10.8%	intergenic (+68/+38)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,791,013	T→A	5.2%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,815,326	T→G	13.8%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,815,327	C→A	11.3%	intergenic (+97/‑72)	eno → / → ftsB	enolase/cell division protein
RA	1,825,966	Δ1 bp	100%	coding (738/1422 nt)	PP_1624 →	group II intron‑encoding maturase
RA	1,825,970	2 bp→CT	100%	coding (742‑743/1422 nt)	PP_1624 →	group II intron‑encoding maturase
RA	1,827,179	G→T	5.5%	intergenic (+30/+28)	PP_mr22 → / ← fdxA	PrrB_RsmZ ncRNA/ferredoxin 1
RA	1,827,180	A→T	5.8%	intergenic (+31/+27)	PP_mr22 → / ← fdxA	PrrB_RsmZ ncRNA/ferredoxin 1
RA	1,827,181	A→C	5.8%	intergenic (+32/+26)	PP_mr22 → / ← fdxA	PrrB_RsmZ ncRNA/ferredoxin 1
RA	1,847,803	T→G	6.8%	N661T (AAC→ACC)	gacS ←	sensor protein GacS
RA	1,851,288	Δ1 bp	5.2%	coding (588/1377 nt)	pfeS‑II →	histidine kinase
RA	1,856,513	A→G	100%	D203G (GAT→GGT)	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	1,902,194	G→T	7.1%	intergenic (‑56/+88)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,902,198	T→A	7.7%	intergenic (‑60/+84)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,902,202	A→C	7.9%	intergenic (‑64/+80)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,904,269	A→G	5.3%	intergenic (+348/‑172)	PP_t18 → / → PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
RA	1,920,589:1	+A	5.3%	intergenic (+26/‑263)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,920,596	Δ1 bp	5.0%	intergenic (+33/‑256)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,926,540	T→A	18.2%	intergenic (+24/+37)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,926,541	T→A	18.6%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,937,594	T→A	8.3%	intergenic (‑70/+81)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,960,183	T→G	6.4%	intergenic (+21/‑172)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,960,187	G→A	6.2%	intergenic (+25/‑168)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,960,190	G→C	5.7%	intergenic (+28/‑165)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,960,191	C→T	6.1%	intergenic (+29/‑164)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,960,201	T→A	8.3%	intergenic (+39/‑154)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,960,202	T→A	8.3%	intergenic (+40/‑153)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,960,212	A→G	6.5%	intergenic (+50/‑143)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,960,213	G→C	5.0%	intergenic (+51/‑142)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,960,216	T→C	5.4%	intergenic (+54/‑139)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,972,170	A→C	8.1%	intergenic (+48/+71)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,171	T→A	8.1%	intergenic (+49/+70)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,172	C→G	8.2%	intergenic (+50/+69)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,173	A→G	8.4%	intergenic (+51/+68)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,174	C→G	8.1%	intergenic (+52/+67)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,180	C→T	7.6%	intergenic (+58/+61)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,184	C→T	7.0%	intergenic (+62/+57)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,185	A→G	7.2%	intergenic (+63/+56)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,189	A→G	7.6%	intergenic (+67/+52)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,195	C→G	6.3%	intergenic (+73/+46)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,196	C→T	6.9%	intergenic (+74/+45)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,197	C→G	7.2%	intergenic (+75/+44)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,198	T→A	6.5%	intergenic (+76/+43)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,199	G→T	6.6%	intergenic (+77/+42)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,998,594	G→T	5.6%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,998,595	C→G	5.8%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,998,596	A→C	5.6%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	2,032,384	T→G	6.5%	L61R (CTG→CGG)	wbpL →	glycosyl transferase WbpL
RA	2,032,424	T→G	8.8%	S74R (AGT→AGG)	wbpL →	glycosyl transferase WbpL
RA	2,032,426	T→G	5.2%	V75G (GTG→GGG)	wbpL →	glycosyl transferase WbpL
RA	2,039,340	A→T	5.2%	intergenic (+164/+1277)	pgi‑I → / ← PP_5477	glucose 6‑phosphate isomerase/hypothetical protein
RA	2,064,645	G→T	5.0%	intergenic (+87/+37)	PP_1835 → / ← PP_1836	hypothetical protein/ZIP family metal transporter
RA	2,064,646	A→C	5.4%	intergenic (+88/+36)	PP_1835 → / ← PP_1836	hypothetical protein/ZIP family metal transporter
RA	2,068,177	C→G	14.3%	intergenic (+42/‑165)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,184	C→A	13.3%	intergenic (+49/‑158)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,185	A→C	16.5%	intergenic (+50/‑157)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,186	T→C	13.8%	intergenic (+51/‑156)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,193	G→A	18.5%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,197	T→C	18.5%	intergenic (+62/‑145)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,200	G→A	18.2%	intergenic (+65/‑142)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,204	T→C	17.3%	intergenic (+69/‑138)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,211	G→A	12.9%	intergenic (+76/‑131)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,212	G→T	13.9%	intergenic (+77/‑130)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,213	T→G	16.7%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,220	C→G	11.4%	intergenic (+85/‑122)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,073,143	A→T	9.4%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,073,144	A→T	9.1%	intergenic (‑97/+24)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,086,104	G→T	6.5%	intergenic (+30/+85)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,086,105	C→T	6.6%	intergenic (+31/+84)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,086,106	A→G	6.8%	intergenic (+32/+83)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,086,107	A→C	7.5%	intergenic (+33/+82)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,090,447	G→C	5.2%	intergenic (+164/‑431)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,090,448	G→C	5.4%	intergenic (+165/‑430)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,092,325	C→G	9.1%	intergenic (+146/+772)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,092,326	C→G	9.1%	intergenic (+147/+771)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,092,693	G→C	5.9%	intergenic (+514/+404)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,092,694	G→C	6.0%	intergenic (+515/+403)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,097,418	T→A	5.8%	intergenic (+72/+19)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,097,419	T→A	5.7%	intergenic (+73/+18)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,100,181	G→C	5.6%	intergenic (‑240/+77)	htpX ← / ← alaA	protease HtpX/glutamate‑pyruvate aminotransferase
RA	2,100,184	G→C	5.6%	intergenic (‑243/+74)	htpX ← / ← alaA	protease HtpX/glutamate‑pyruvate aminotransferase
RA	2,105,047	G→C	6.1%	intergenic (‑166/‑39)	PP_1875 ← / → PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
RA	2,105,048	C→A	5.1%	intergenic (‑167/‑38)	PP_1875 ← / → PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
RA	2,106,752	T→G	7.0%	Q183P (CAG→CCG)	PP_1878 ←	hypothetical protein
RA	2,109,689	A→G	5.9%	F63L (TTC→CTC)	PP_1879 ←	hypothetical protein
RA	2,109,690	C→T	5.8%	E62E (GAG→GAA)	PP_1879 ←	hypothetical protein
RA	2,139,270	G→T	6.4%	intergenic (‑44/+25)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,144,614	T→G	5.4%	Q167H (CAA→CAC)	PP_5481 ←	hypothetical protein
RA	2,152,200	T→G	6.6%	intergenic (+81/+36)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,152,201	T→C	6.5%	intergenic (+82/+35)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,152,202	G→A	6.5%	intergenic (+83/+34)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,152,203	C→A	6.6%	intergenic (+84/+33)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,171,636	T→A	6.2%	intergenic (‑488/‑293)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,171,699	C→A	6.2%	intergenic (‑551/‑230)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,171,700	T→A	5.9%	intergenic (‑552/‑229)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,171,701	T→G	5.8%	intergenic (‑553/‑228)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,246,283	C→G	8.9%	intergenic (+38/‑243)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,292	A→G	13.8%	intergenic (+47/‑234)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,295	G→A	13.7%	intergenic (+50/‑231)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,296	G→T	17.6%	intergenic (+51/‑230)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,298	A→G	15.0%	intergenic (+53/‑228)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,303	C→T	14.4%	intergenic (+58/‑223)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,305	A→C	13.4%	intergenic (+60/‑221)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,306	T→C	15.7%	intergenic (+61/‑220)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,309	C→T	14.5%	intergenic (+64/‑217)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,318	C→G	10.1%	intergenic (+73/‑208)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,835	G→C	6.3%	noncoding (35/76 nt)	PP_t27 →	tRNA‑Ala
RA	2,276,219	T→A	6.8%	intergenic (+48/‑172)	PP_2002 → / → PP_t31	oxidoreductase/tRNA‑Val
RA	2,276,255	C→G	5.8%	intergenic (+84/‑136)	PP_2002 → / → PP_t31	oxidoreductase/tRNA‑Val
RA	2,276,658	C→T	5.9%	intergenic (+50/‑50)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,276,659	A→G	6.3%	intergenic (+51/‑49)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,276,920	T→C	5.6%	intergenic (+136/‑6)	PP_t33 → / → PP_t34	tRNA‑Asp/tRNA‑Asp
RA	2,278,054	C→G	8.9%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,278,058	A→T	9.0%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,278,062	C→G	9.5%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,278,072	C→T	8.0%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,287,762	T→G	36.5%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,766	G→C	31.5%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,767	G→C	31.5%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,771	C→A	32.7%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,804	C→A	6.8%	intergenic (‑204/+25)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,300,798	A→T	5.1%	intergenic (+52/+81)	PP_5496 → / ← PP_2023	hypothetical protein/glutathione S‑transferase family protein
RA	2,300,821	T→G	6.3%	intergenic (+75/+58)	PP_5496 → / ← PP_2023	hypothetical protein/glutathione S‑transferase family protein
RA	2,341,489	C→T	5.9%	intergenic (‑41/+39)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,341,490	A→T	6.1%	intergenic (‑42/+38)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,341,491	A→G	6.1%	intergenic (‑43/+37)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,377,073	G→T	6.4%	intergenic (+33/+79)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,377,074	T→C	6.2%	intergenic (+34/+78)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,377,075	G→A	6.1%	intergenic (+35/+77)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,377,076	A→C	6.3%	intergenic (+36/+76)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,386,394	T→G	7.2%	intergenic (+31/+56)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,386,395	C→A	5.8%	intergenic (+32/+55)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,400,575	G→C	5.7%	intergenic (‑191/+52)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,400,577	A→T	5.4%	intergenic (‑193/+50)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,400,579	G→C	6.2%	intergenic (‑195/+48)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,407,300	A→T	5.0%	L20Q (CTG→CAG)	PP_2103 ←	hypothetical protein
RA	2,407,303	A→T	5.8%	L19Q (CTG→CAG)	PP_2103 ←	hypothetical protein
RA	2,407,309	Δ1 bp	5.3%	coding (50/330 nt)	PP_2103 ←	hypothetical protein
RA	2,417,896	G→C	6.1%	intergenic (+168/‑253)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,417,897	G→C	6.1%	intergenic (+169/‑252)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,425,590	Δ1 bp	6.2%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,425,594:1	+T	6.2%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,430,856	T→G	7.3%	E33D (GAA→GAC) ‡	PP_2126 ←	LuxR family transcriptional regulator
RA	2,430,858	C→A	5.3%	E33* (GAA→TAA) ‡	PP_2126 ←	LuxR family transcriptional regulator
RA	2,449,416	G→T	5.1%	R156S (CGC→AGC)	sulA ←	cell division inhibitor SulA
RA	2,461,044	T→C	5.4%	L256P (CTG→CCG)	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,461,047	C→G	5.5%	A257G (GCC→GGC)	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,461,049	T→A	5.5%	C258S (TGC→AGC) ‡	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,461,051	C→G	5.5%	C258W (TGC→TGG) ‡	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,461,054	G→A	5.7%	P259P (CCG→CCA)	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,461,853	T→G	5.4%	intergenic (+112/‑69)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,461,856	T→G	6.2%	intergenic (+115/‑66)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,479,133	C→T	15.7%	intergenic (‑46/+134)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,135	T→C	18.7%	intergenic (‑48/+132)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,140	T→C	18.5%	intergenic (‑53/+127)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,141	C→T	17.1%	intergenic (‑54/+126)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,146	A→G	16.6%	intergenic (‑59/+121)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,147	G→A	17.5%	intergenic (‑60/+120)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,152	G→A	15.1%	intergenic (‑65/+115)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,154	A→G	14.5%	intergenic (‑67/+113)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,503,208	C→T	5.0%	H39H (CAC→CAT)	PP_2193 →	ferric siderophore receptor
RA	2,507,990	A→T	5.1%	Q98L (CAG→CTG)	speB →	agmatinase
RA	2,510,430	T→C	5.1%	L13P (CTG→CCG)	PP_2199 →	hypothetical protein
RA	2,510,435	A→G	5.1%	T15A (ACT→GCT)	PP_2199 →	hypothetical protein
RA	2,513,781	A→T	9.8%	M109K (ATG→AAG)	PP_2203 ←	hypothetical protein
RA	2,534,020	G→C	6.7%	intergenic (+155/‑252)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,534,021	G→C	6.8%	intergenic (+156/‑251)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,545,801	T→A	10.0%	intergenic (+22/+27)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,545,802	G→C	10.0%	intergenic (+23/+26)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,545,803	T→A	9.3%	intergenic (+24/+25)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,640,432	C→A	6.7%	intergenic (+30/+87)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,640,433	T→C	6.6%	intergenic (+31/+86)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,640,434	C→G	6.6%	intergenic (+32/+85)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,640,435	G→A	6.5%	intergenic (+33/+84)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,640,436	T→G	6.6%	intergenic (+34/+83)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,656,268	G→C	7.4%	intergenic (+41/+29)	PP_2323 → / ← aroF‑I	hypothetical protein/tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
RA	2,673,009	T→A	5.0%	intergenic (+35/‑132)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,010	T→A	5.2%	intergenic (+36/‑131)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,011	T→A	5.0%	intergenic (+37/‑130)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,045	T→G	13.6%	intergenic (+71/‑96)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,046:1	+T	12.3%	intergenic (+72/‑95)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,054	G→C	11.1%	intergenic (+80/‑87)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,055	G→A	11.4%	intergenic (+81/‑86)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,058	T→C	11.3%	intergenic (+84/‑83)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,059	G→A	11.7%	intergenic (+85/‑82)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,062	T→C	11.5%	intergenic (+88/‑79)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,063	G→C	11.3%	intergenic (+89/‑78)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,071	Δ1 bp	12.7%	intergenic (+97/‑70)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,073	C→A	15.8%	intergenic (+99/‑68)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,674,663	T→G	9.2%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,674,666	C→A	9.1%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,698,795	G→A	5.0%	A32T (GCC→ACC)	PP_2362 →	usher protein
RA	2,698,802	T→C	9.2%	V34A (GTC→GCC)	PP_2362 →	usher protein
RA	2,712,039	G→T	5.5%	intergenic (+16/+31)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,712,040	A→C	5.9%	intergenic (+17/+30)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,712,041	G→T	5.0%	intergenic (+18/+29)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,712,042	A→C	6.1%	intergenic (+19/+28)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,737,574	T→G	6.6%	V640G (GTG→GGG)	polB →	DNA polymerase II
RA	2,761,829	A→T	5.3%	intergenic (+16/+17)	czcA‑II → / ← PP_2411	cation efflux system protein/MFS transporter
RA	2,769,364	T→G	5.1%	A210A (GCA→GCC) ‡	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,769,365	G→A	5.2%	A210V (GCA→GTA) ‡	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,769,371	C→G	5.2%	G208A (GGC→GCC)	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,769,377	T→C	5.6%	D206G (GAC→GGC) ‡	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,769,378	C→A	5.4%	D206Y (GAC→TAC) ‡	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,789,136	G→C	5.0%	Q199H (CAG→CAC)	PP_2437 →	acyl‑CoA dehydrogenase
RA	2,798,744	G→T	12.0%	intergenic (+61/+66)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,798,747	A→C	9.5%	intergenic (+64/+63)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,798,748	C→A	9.5%	intergenic (+65/+62)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,798,749	T→G	10.2%	intergenic (+66/+61)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,798,750	G→T	10.2%	intergenic (+67/+60)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,798,753	A→C	10.1%	intergenic (+70/+57)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,801,828	G→T	5.8%	intergenic (+20/‑112)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,801,829	A→T	5.7%	intergenic (+21/‑111)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,801,830	A→T	5.8%	intergenic (+22/‑110)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,801,831	A→C	5.7%	intergenic (+23/‑109)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,804,169	C→T	5.0%	intergenic (‑191/+25)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,804,178	C→T	5.5%	intergenic (‑200/+16)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,807,983	A→C	5.4%	K459Q (AAG→CAG) ‡	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,807,984	A→T	5.2%	K459M (AAG→ATG) ‡	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,807,985	G→T	5.2%	K459N (AAG→AAT) ‡	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,813,536	A→C	7.2%	noncoding (416/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,813,537	C→T	5.9%	noncoding (415/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,813,538	A→T	6.1%	noncoding (414/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,813,539	A→G	5.8%	noncoding (413/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,813,540	G→T	5.6%	noncoding (412/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,817,767	C→T	7.6%	intergenic (+69/‑41)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,817,770	C→G	7.3%	intergenic (+72/‑38)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,817,773	A→G	7.3%	intergenic (+75/‑35)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,825,589	C→T	7.2%	intergenic (+398/+114)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,825,590	G→C	7.3%	intergenic (+399/+113)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,825,591	A→G	7.9%	intergenic (+400/+112)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,857,389	T→A	8.2%	Q312L (CAG→CTG)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,868,821	T→G	11.1%	S297A (TCG→GCG)	gllR →	HTH‑type transcriptional regulator GalR
RA	2,878,639	G→A	7.8%	V143M (GTG→ATG) ‡	cigR →	membrane protein
RA	2,878,640	T→C	7.8%	V143A (GTG→GCG) ‡	cigR →	membrane protein
RA	2,946,327	C→A	5.0%	R189R (CGC→CGA)	PP_2574 →	LysR family transcriptional regulator
RA	2,956,326	G→C	15.1%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,956,333	A→C	20.4%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,956,334	G→T	19.7%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,956,341	G→C	18.1%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,962,078	A→T	5.0%	intergenic (+41/‑155)	PP_2588 → / → PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
RA	2,962,080	G→A	5.7%	intergenic (+43/‑153)	PP_2588 → / → PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
RA	2,962,110	C→G	5.7%	intergenic (+73/‑123)	PP_2588 → / → PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
RA	2,962,116	T→G	6.2%	intergenic (+79/‑117)	PP_2588 → / → PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
RA	2,963,765	T→C	5.7%	intergenic (+39/+103)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,782	T→C	15.4%	intergenic (+56/+86)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,791	G→C	19.1%	intergenic (+65/+77)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,792	T→C	19.0%	intergenic (+66/+76)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,795	G→C	18.6%	intergenic (+69/+73)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,798	G→A	19.6%	intergenic (+72/+70)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,799	G→C	19.5%	intergenic (+73/+69)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,808	G→A	17.7%	intergenic (+82/+60)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	3,005,756	G→T	5.3%	P78T (CCG→ACG)	PP_2624 ←	hypothetical protein
RA	3,005,757	T→G	5.3%	V77V (GTA→GTC)	PP_2624 ←	hypothetical protein
RA	3,005,760	C→G	5.2%	T76T (ACG→ACC)	PP_2624 ←	hypothetical protein
RA	3,005,764	A→C	5.2%	V75G (GTG→GGG)	PP_2624 ←	hypothetical protein
RA	3,006,816	G→C	5.5%	G183A (GGC→GCC)	PP_2625 →	hypothetical protein
RA	3,006,819	T→C	5.2%	L184P (CTG→CCG)	PP_2625 →	hypothetical protein
RA	3,006,825	C→G	5.3%	A186G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,053,596	G→T	11.3%	intergenic (+59/‑237)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,053,597	A→C	13.4%	intergenic (+60/‑236)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,058,210	G→A	9.2%	intergenic (+19/+27)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,058,212	T→C	8.6%	intergenic (+21/+25)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,058,215	T→C	9.3%	intergenic (+24/+22)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,059,723	G→T	5.4%	intergenic (‑206/+102)	PP_2666 ← / ← PP_2667	hypothetical protein/ABC transporter permease
RA	3,059,724	C→G	5.3%	intergenic (‑207/+101)	PP_2666 ← / ← PP_2667	hypothetical protein/ABC transporter permease
RA	3,059,725	A→C	10.8%	intergenic (‑208/+100)	PP_2666 ← / ← PP_2667	hypothetical protein/ABC transporter permease
RA	3,075,468	A→T	5.3%	intergenic (+44/‑310)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,469	C→T	5.4%	intergenic (+45/‑309)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,471	G→A	5.3%	intergenic (+47/‑307)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,473	T→C	5.3%	intergenic (+49/‑305)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,479	C→T	5.3%	intergenic (+55/‑299)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,480	A→G	5.3%	intergenic (+56/‑298)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,486	G→A	5.4%	intergenic (+62/‑292)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,488	T→C	5.4%	intergenic (+64/‑290)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,490	A→G	5.6%	intergenic (+66/‑288)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,491	A→T	5.5%	intergenic (+67/‑287)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,081,086	T→G	5.8%	intergenic (‑42/+32)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,084,636	G→C	5.2%	intergenic (‑379/+55)	PP_2688 ← / ← PP_2689	hypothetical protein/endoribonuclease
RA	3,151,570	G→C	5.4%	intergenic (+14/+52)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,151,571	G→C	5.3%	intergenic (+15/+51)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,257,484	G→A	6.8%	intergenic (+22/+221)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,257,489	T→C	7.9%	intergenic (+27/+216)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,271,103	G→C	6.8%	intergenic (+28/+31)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,271,105	A→T	6.6%	intergenic (+30/+29)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,271,106	A→T	7.1%	intergenic (+31/+28)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,271,108	G→C	6.7%	intergenic (+33/+26)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,276,138	G→C	5.3%	R313R (CGC→CGG) ‡	PP_2869 ←	FMN‑binding oxidoreductase
RA	3,276,140	G→C	5.4%	R313G (CGC→GGC) ‡	PP_2869 ←	FMN‑binding oxidoreductase
RA	3,297,313	G→C	7.9%	Q535H (CAG→CAC)	PP_2893 →	hypothetical protein
RA	3,297,315	T→G	12.4%	L536R (CTG→CGG)	PP_2893 →	hypothetical protein
RA	3,305,591	T→G	5.6%	E103A (GAG→GCG) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,305,592	C→T	5.7%	E103K (GAG→AAG) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,305,597	A→G	5.6%	V101A (GTG→GCG) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,305,598	C→A	5.6%	V101L (GTG→TTG) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,309,755	A→G	9.2%	intergenic (+16/+16)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,309,756	C→G	8.5%	intergenic (+17/+15)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,309,757	C→T	8.5%	intergenic (+18/+14)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,317,679	G→T	5.1%	intergenic (+28/‑134)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,317,680	T→A	5.3%	intergenic (+29/‑133)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,317,681	T→A	5.3%	intergenic (+30/‑132)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,317,682	A→C	5.3%	intergenic (+31/‑131)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,318,817	C→A	6.2%	intergenic (+30/‑129)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,318,820	T→G	6.0%	intergenic (+33/‑126)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,324,132	T→G	9.4%	intergenic (‑104/+88)	treSA ← / ← PP_2919	trehalose synthase A/LysR family transcriptional regulator
RA	3,324,153	T→G	12.5%	intergenic (‑125/+67)	treSA ← / ← PP_2919	trehalose synthase A/LysR family transcriptional regulator
RA	3,324,158	A→T	7.8%	intergenic (‑130/+62)	treSA ← / ← PP_2919	trehalose synthase A/LysR family transcriptional regulator
RA	3,324,166	T→G	10.8%	intergenic (‑138/+54)	treSA ← / ← PP_2919	trehalose synthase A/LysR family transcriptional regulator
RA	3,324,172	T→A	6.6%	intergenic (‑144/+48)	treSA ← / ← PP_2919	trehalose synthase A/LysR family transcriptional regulator
RA	3,344,155	T→A	5.3%	intergenic (‑165/+78)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,344,159	T→A	10.2%	intergenic (‑169/+74)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,344,208	C→T	6.1%	intergenic (‑218/+25)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,344,209	G→C	7.6%	intergenic (‑219/+24)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,344,210	A→G	6.5%	intergenic (‑220/+23)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,429,882	C→G	5.6%	intergenic (+478/‑34)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,429,884	T→C	5.5%	intergenic (+480/‑32)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,429,885	G→A	5.3%	intergenic (+481/‑31)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,429,887	C→G	5.4%	intergenic (+483/‑29)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,448,521	T→G	17.5%	F763C (TTT→TGT)	PP_3062 →	tail length determination protein
RA	3,452,278	A→C	12.4%	S18R (AGC→CGC)	PP_5556 →	bacteriophage lysis protein
RA	3,452,283	T→G	7.9%	A19A (GCT→GCG)	PP_5556 →	bacteriophage lysis protein
RA	3,458,455	C→T	5.5%	intergenic (‑17/+96)	PP_3069 ← / ← ppiC‑I	outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C
RA	3,458,472	A→G	6.3%	intergenic (‑34/+79)	PP_3069 ← / ← ppiC‑I	outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C
RA	3,469,292	A→T	5.7%	S20T (TCG→ACG)	PP_3078 ←	ABC transporter substrate‑binding protein
RA	3,471,047	G→C	7.3%	noncoding (105/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,471,048	A→T	7.3%	noncoding (104/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,471,049	A→T	7.5%	noncoding (103/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,471,050	G→C	7.5%	noncoding (102/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,471,833	T→G	18.2%	intergenic (‑16/+108)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,480,485	A→C	5.8%	L407W (TTG→TGG)	PP_3087 ←	excinuclease ABC subunit A
RA	3,533,558	T→A	6.1%	L128Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,533,561	T→A	5.9%	L129Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,539,754	T→G	7.7%	intergenic (+49/‑106)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,539,759	A→C	6.7%	intergenic (+54/‑101)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,539,760	C→A	7.1%	intergenic (+55/‑100)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,539,763	T→G	6.7%	intergenic (+58/‑97)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,539,764	G→T	7.0%	intergenic (+59/‑96)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,539,769	C→A	7.2%	intergenic (+64/‑91)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,583,420	T→A	12.1%	intergenic (+105/‑219)	PP_3158 → / → PP_5589	hypothetical protein/rhs repeat‑associated core domain‑containing protein
RA	3,596,568	T→A	5.5%	L258M (TTG→ATG) ‡	PP_3169 →	membrane protein
RA	3,596,569	T→A	5.4%	L258* (TTG→TAG) ‡	PP_3169 →	membrane protein
RA	3,620,448	A→G	7.1%	intergenic (+19/‑210)	PP_3186 → / → codB	transcriptional regulator/cytosine transporter
RA	3,629,136	G→C	6.4%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,629,794	A→C	9.8%	L229R (CTT→CGT)	PP_3195 ←	hypothetical protein
RA	3,633,074	C→G	5.9%	intergenic (+11/‑129)	PP_3198 → / → PP_3199	2Fe‑2S ferredoxin/monooxygenase
RA	3,646,694	G→C	5.7%	P26A (CCG→GCG)	PP_3208 ←	Pdr/VanB family oxidoreductase
RA	3,649,940	C→T	6.9%	intergenic (‑43/+23)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,649,943	A→G	6.3%	intergenic (‑46/+20)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,669,072	G→C	5.7%	intergenic (‑171/‑31)	PP_3227 ← / → PP_3228	LysR family transcriptional regulator/aliphatic sulfonate‑binding protein
RA	3,758,587	G→T	5.2%	A96A (GCC→GCA)	PP_3316 ←	chaperone‑associated ATPase
RA	3,758,590	A→C	5.3%	V95V (GTT→GTG)	PP_3316 ←	chaperone‑associated ATPase
RA	3,767,934	A→T	6.3%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,768,494	A→G	7.0%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,768,496	G→C	7.0%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,768,498	C→T	7.0%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,781,365	T→G	15.8%	intergenic (+55/‑88)	PP_3338 → / → PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein
RA	3,781,367	C→G	13.2%	intergenic (+57/‑86)	PP_3338 → / → PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein
RA	3,781,371	T→G	17.2%	intergenic (+61/‑82)	PP_3338 → / → PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein
RA	3,781,387	A→C	11.0%	intergenic (+77/‑66)	PP_3338 → / → PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein
RA	3,817,651	A→G	5.1%	D328G (GAC→GGC)	PP_3368 →	MFS transporter
RA	3,817,657	C→T	5.0%	A330V (GCC→GTC)	PP_3368 →	MFS transporter
RA	3,849,916	A→T	6.8%	L237Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,849,920	C→G	6.6%	G236R (GGC→CGC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,849,921	C→G	6.6%	A235A (GCG→GCC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,849,925	A→T	7.2%	L234Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,874,851	T→G	6.3%	E354A (GAG→GCG)	PP_3419 ←	sigma‑54 dependent transcriptional regulator/response regulator
RA	3,883,814	C→G	5.2%	A219G (GCC→GGC)	mexF →	multidrug RND transporter MexF
RA	3,887,806	A→G	7.1%	intergenic (+56/‑169)	oprN → / → PP_3428	multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein
RA	3,887,817	C→T	7.0%	intergenic (+67/‑158)	oprN → / → PP_3428	multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein
RA	3,919,426	G→C	5.7%	R118R (CGC→CGG)	PP_3454 ←	transcriptional regulator
RA	3,934,790	G→T	8.7%	intergenic (+20/+18)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,934,792	A→C	9.4%	intergenic (+22/+16)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,952,942	A→C	7.8%	C34G (TGT→GGT)	PP_3483 ←	type II secretion system protein
RA	3,952,965	T→G	8.8%	Q26P (CAG→CCG)	PP_3483 ←	type II secretion system protein
RA	3,956,096	G→T	5.9%	intergenic (‑67/+128)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,956,097	C→G	6.3%	intergenic (‑68/+127)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,956,098	A→C	13.6%	intergenic (‑69/+126)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,956,107	G→C	9.2%	intergenic (‑78/+117)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,956,110	A→C	7.9%	intergenic (‑81/+114)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,956,143	T→G	7.7%	intergenic (‑114/+81)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,965,606	T→C	7.6%	intergenic (‑229/‑100)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,965,608	T→A	7.5%	intergenic (‑231/‑98)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,965,610	G→A	7.6%	intergenic (‑233/‑96)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,984,644	G→A	6.9%	T327M (ACG→ATG)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,984,646	G→T	6.9%	I326I (ATC→ATA)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,984,649	A→C	6.9%	I325M (ATT→ATG) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,984,651	T→C	6.9%	I325V (ATT→GTT) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	4,018,201	G→A	100%	intergenic (+144/‑36)	mvaB → / → PP_mr44	hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA
RA	4,054,900	A→G	26.7%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,054,903	C→G	26.1%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,054,906	C→T	26.0%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,078,602	G→A	6.2%	intergenic (‑147/+477)	mdtA ← / ← PP_3586	multidrug transporter membrane fusion protein/transposase
RA	4,078,603	T→C	6.2%	intergenic (‑148/+476)	mdtA ← / ← PP_3586	multidrug transporter membrane fusion protein/transposase
RA	4,084,440	A→T	5.4%	intergenic (‑251/+133)	sdaC ← / ← amaC	serine:H+ symport permease/D‑lysine aminotransferase
RA	4,084,441	A→T	5.3%	intergenic (‑252/+132)	sdaC ← / ← amaC	serine:H+ symport permease/D‑lysine aminotransferase
RA	4,084,442	A→T	5.6%	intergenic (‑253/+131)	sdaC ← / ← amaC	serine:H+ symport permease/D‑lysine aminotransferase
RA	4,110,625	T→A	5.0%	intergenic (+38/+47)	PP_3612 → / ← PP_3613	TonB‑dependent receptor/L‑sorbosone dehydrogenase
RA	4,110,626	C→G	5.2%	intergenic (+39/+46)	PP_3612 → / ← PP_3613	TonB‑dependent receptor/L‑sorbosone dehydrogenase
RA	4,143,578	C→A	5.6%	G28G (GGC→GGA)	PP_3643 →	oxidoreductase
RA	4,143,579	T→G	5.6%	S29A (TCG→GCG) ‡	PP_3643 →	oxidoreductase
RA	4,143,581	G→C	5.9%	S29S (TCG→TCC) ‡	PP_3643 →	oxidoreductase
RA	4,143,589	G→T	5.8%	G32V (GGC→GTC)	PP_3643 →	oxidoreductase
RA	4,148,875	T→A	6.8%	intergenic (+35/‑88)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,148,876	T→A	6.8%	intergenic (+36/‑87)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,160,287	A→G	5.1%	F67S (TTC→TCC)	PP_3658 ←	aromatic compound MFS transporter
RA	4,163,456	C→G	9.3%	A158G (GCG→GGG)	PP_3661 →	membrane protein
RA	4,163,459	T→G	22.0%	L159R (CTG→CGG)	PP_3661 →	membrane protein
RA	4,163,464	A→C	16.8%	S161R (AGC→CGC)	PP_3661 →	membrane protein
RA	4,164,075	A→G	7.0%	intergenic (+30/‑179)	PP_3661 → / → PP_3662	membrane protein/hypothetical protein
RA	4,164,136	C→T	11.1%	intergenic (+91/‑118)	PP_3661 → / → PP_3662	membrane protein/hypothetical protein
RA	4,164,150	G→C	6.4%	intergenic (+105/‑104)	PP_3661 → / → PP_3662	membrane protein/hypothetical protein
RA	4,164,152	A→G	6.4%	intergenic (+107/‑102)	PP_3661 → / → PP_3662	membrane protein/hypothetical protein
RA	4,164,153	G→A	6.4%	intergenic (+108/‑101)	PP_3661 → / → PP_3662	membrane protein/hypothetical protein
RA	4,165,654	G→C	5.3%	intergenic (+27/+94)	PP_3662 → / ← PP_3663	hypothetical protein/GGDEF domain‑containing protein
RA	4,165,655	G→C	5.3%	intergenic (+28/+93)	PP_3662 → / ← PP_3663	hypothetical protein/GGDEF domain‑containing protein
RA	4,175,173	T→G	9.4%	intergenic (‑288/‑99)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,175,175	A→T	8.4%	intergenic (‑290/‑97)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,175,176	A→T	8.6%	intergenic (‑291/‑96)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,175,178	C→A	8.9%	intergenic (‑293/‑94)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,192,965	G→A	6.9%	intergenic (+77/‑133)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,192,966	C→G	6.9%	intergenic (+78/‑132)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,192,967	T→C	6.8%	intergenic (+79/‑131)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,193,342	G→T	5.8%	R82L (CGT→CTT) ‡	PP_3684 →	hypothetical protein
RA	4,193,343	T→C	6.0%	R82R (CGT→CGC) ‡	PP_3684 →	hypothetical protein
RA	4,193,344	G→A	5.9%	E83K (GAG→AAG) ‡	PP_3684 →	hypothetical protein
RA	4,193,345	A→C	6.0%	E83A (GAG→GCG) ‡	PP_3684 →	hypothetical protein
RA	4,216,463	G→A	5.4%	R8C (CGC→TGC)	PP_3693 ←	transcriptional regulator MvaT
RA	4,249,351	G→C	5.2%	S221R (AGC→AGG)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,321,015	A→C	5.8%	A35A (GCA→GCC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,321,018	G→T	5.4%	A36A (GCG→GCT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,343,396	T→C	5.8%	intergenic (+23/+119)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,343,397	G→A	5.8%	intergenic (+24/+118)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,343,486	A→T	12.5%	intergenic (+113/+29)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,343,487	A→T	11.1%	intergenic (+114/+28)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,345,068	A→T	40.4%	intergenic (+60/‑271)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,069	G→C	42.9%	intergenic (+61/‑270)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,074	A→G	47.0%	intergenic (+66/‑265)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,075	C→T	47.8%	intergenic (+67/‑264)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,076	A→G	47.8%	intergenic (+68/‑263)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,077	C→T	47.8%	intergenic (+69/‑262)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,082	G→C	44.7%	intergenic (+74/‑257)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,083	A→T	44.7%	intergenic (+75/‑256)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,349,295	A→T	12.9%	intergenic (+33/‑123)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,297	C→T	12.5%	intergenic (+35/‑121)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,298	A→G	12.7%	intergenic (+36/‑120)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,303	C→G	10.7%	intergenic (+41/‑115)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,306	C→G	12.4%	intergenic (+44/‑112)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,311	C→T	12.8%	intergenic (+49/‑107)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,312	A→G	12.8%	intergenic (+50/‑106)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,314	A→T	13.0%	intergenic (+52/‑104)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,353,698	A→G	46.4%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,361,194	T→G	8.0%	V240G (GTG→GGG)	modC →	molybdate ABC transporter ATP‑binding protein ModC
RA	4,394,501	T→A	7.0%	T411T (ACA→ACT)	PP_3865 ←	tail protein
RA	4,435,077	T→G	6.0%	intergenic (+37/‑147)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,435,078	G→T	6.0%	intergenic (+38/‑146)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,435,079	A→C	6.0%	intergenic (+39/‑145)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,435,080	C→A	6.0%	intergenic (+40/‑144)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,447,621	C→G	6.1%	intergenic (‑98/+40)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,447,622	C→G	6.1%	intergenic (‑99/+39)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,450,243	C→G	6.2%	G117A (GGG→GCG) ‡	nicE ←	maleate isomerase
RA	4,450,244	C→G	6.2%	G117R (GGG→CGG) ‡	nicE ←	maleate isomerase
RA	4,508,782	C→T	5.5%	intergenic (+38/‑60)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,508,783	A→G	5.3%	intergenic (+39/‑59)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,517,455	C→A	6.7%	G9V (GGT→GTT)	lolA ←	outer membrane lipoprotein carrier protein
RA	4,517,458	T→G	6.8%	N8T (AAC→ACC)	lolA ←	outer membrane lipoprotein carrier protein
RA	4,522,181	C→A	6.5%	intergenic (+25/+61)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,522,182	A→C	6.3%	intergenic (+26/+60)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,522,183	G→C	6.3%	intergenic (+27/+59)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,522,184	G→T	5.8%	intergenic (+28/+58)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,522,185	T→G	6.2%	intergenic (+29/+57)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,522,225	A→C	7.0%	intergenic (+69/+17)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,522,226	A→T	7.1%	intergenic (+70/+16)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,522,227	G→T	7.0%	intergenic (+71/+15)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,535,018	T→A	17.8%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,535,019	T→A	19.5%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,554,137	T→A	5.5%	intergenic (+16/‑120)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,554,138	G→C	5.4%	intergenic (+17/‑119)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,554,139	T→A	5.4%	intergenic (+18/‑118)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,556,967	A→T	11.1%	intergenic (+68/+113)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,556,968	C→G	11.1%	intergenic (+69/+112)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,556,969	A→T	10.9%	intergenic (+70/+111)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,557,015	T→G	5.4%	intergenic (+116/+65)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,579,221	C→G	5.4%	R300R (CGC→CGG)	glgX →	glycogen debranching enzyme
RA	4,591,050	A→G	11.8%	intergenic (+140/+77)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,591,052	C→A	11.2%	intergenic (+142/+75)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,591,054	T→C	12.0%	intergenic (+144/+73)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,592,690	G→T	7.1%	R40R (CGC→CGA) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,592,692	G→C	7.6%	R40G (CGC→GGC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,592,693	G→C	7.6%	S39S (TCC→TCG) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,592,695	A→C	7.3%	S39A (TCC→GCC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,602,747	T→A	5.2%	Q686L (CAG→CTG)	PP_4071 ←	membrane protein
RA	4,612,407	A→T	5.7%	K29* (AAG→TAG) ‡	PP_4079 →	hypothetical protein
RA	4,612,408	A→T	5.4%	K29M (AAG→ATG) ‡	PP_4079 →	hypothetical protein
RA	4,647,605	C→T	5.7%	Q185* (CAG→TAG) ‡	PP_4107 →	LysR family transcriptional regulator
RA	4,647,606	A→G	5.7%	Q185R (CAG→CGG) ‡	PP_4107 →	LysR family transcriptional regulator
RA	4,678,544	G→C	5.4%	P107P (CCG→CCC)	PP_4137 →	outer membrane siderophore receptor
RA	4,678,545	G→C	5.6%	G108R (GGG→CGG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,678,546	G→C	5.5%	G108A (GGG→GCG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,680,329	A→G	13.0%	intergenic (+33/+71)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,330	T→G	12.7%	intergenic (+34/+70)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,331	T→C	11.7%	intergenic (+35/+69)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,332	G→T	14.4%	intergenic (+36/+68)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,337	T→C	12.8%	intergenic (+41/+63)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,338	G→A	12.6%	intergenic (+42/+62)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,339	C→A	12.3%	intergenic (+43/+61)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,340	C→T	11.7%	intergenic (+44/+60)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,686,790	T→A	5.4%	L29M (TTG→ATG) ‡	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,686,791	T→A	5.3%	L29* (TTG→TAG) ‡	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,710,333	C→G	14.8%	intergenic (‑76/+101)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,408	T→A	9.2%	intergenic (‑151/+26)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,409	T→A	9.3%	intergenic (‑152/+25)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,716,816	T→A	5.1%	L18H (CTC→CAC) ‡	PP_4171 →	hypothetical protein
RA	4,716,817	C→G	5.0%	L18L (CTC→CTG) ‡	PP_4171 →	hypothetical protein
RA	4,725,847	A→T	5.1%	intergenic (+77/+18)	PP_4177 → / ← PP_4178	hypothetical protein/dienelactone hydrolase family protein
RA	4,730,035	G→A	6.0%	intergenic (+25/+43)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,730,036	A→T	5.9%	intergenic (+26/+42)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,730,037	T→C	6.0%	intergenic (+27/+41)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,745,790	T→G	7.0%	intergenic (+32/+720)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,791	C→A	6.0%	intergenic (+33/+719)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,833	C→G	23.6%	intergenic (+75/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,835	T→A	25.2%	intergenic (+77/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,836	T→A	24.1%	intergenic (+78/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,838	C→G	24.7%	intergenic (+80/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,222:1	+C	100%	intergenic (+464/+288)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,224	A→G	100%	intergenic (+466/+286)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,226	C→T	100%	intergenic (+468/+284)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,229	C→T	100%	intergenic (+471/+281)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,232	C→G	100%	intergenic (+474/+278)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,234	2 bp→CT	100%	intergenic (+476/+275)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,248	C→T	100%	intergenic (+490/+262)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,250	A→C	100%	intergenic (+492/+260)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,253	2 bp→GC	100%	intergenic (+495/+256)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,755,008	T→C	5.3%	intergenic (+35/+37)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,755,011	T→A	5.4%	intergenic (+38/+34)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,755,012	C→T	5.2%	intergenic (+39/+33)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,755,013	A→G	5.2%	intergenic (+40/+32)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,755,014	T→A	5.4%	intergenic (+41/+31)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,755,017	G→A	5.3%	intergenic (+44/+28)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,772,812	C→T	5.2%	intergenic (+32/+37)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,772,813	A→G	5.1%	intergenic (+33/+36)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,801,598	A→G	12.5%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,606	C→T	19.6%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,608	G→C	19.9%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,611	G→C	19.4%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,613	A→G	19.5%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,621	C→T	19.2%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,832,048	C→A	6.5%	S1379I (AGT→ATT) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,832,049	T→G	7.0%	S1379R (AGT→CGT) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,837,048	A→T	5.9%	intergenic (+29/+123)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,837,051	T→A	6.0%	intergenic (+32/+120)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,837,054	A→T	5.8%	intergenic (+35/+117)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,847,890	Δ1 bp	20.2%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,847,898:1	+G	19.4%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,853,600	A→T	5.8%	intergenic (+11/‑95)	PP_4263 → / → hemN	cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,853,601	A→T	5.9%	intergenic (+12/‑94)	PP_4263 → / → hemN	cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,853,602	A→T	6.2%	intergenic (+13/‑93)	PP_4263 → / → hemN	cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,857,398	A→C	8.5%	intergenic (‑75/+222)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,857,452	G→T	5.9%	intergenic (‑129/+168)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,857,454	A→C	20.9%	intergenic (‑131/+166)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,866,147	C→T	9.0%	intergenic (‑104/+133)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,151	A→G	10.6%	intergenic (‑108/+129)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,153	G→T	9.0%	intergenic (‑110/+127)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,154	G→A	8.7%	intergenic (‑111/+126)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,156	G→A	8.7%	intergenic (‑113/+124)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,161	Δ1 bp	9.4%	intergenic (‑118/+119)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,162	T→C	10.6%	intergenic (‑119/+118)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,172:1	+A	8.8%	intergenic (‑129/+108)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,173	G→T	8.8%	intergenic (‑130/+107)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,177	A→T	9.4%	intergenic (‑134/+103)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,178	T→C	9.1%	intergenic (‑135/+102)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,180	T→C	9.7%	intergenic (‑137/+100)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,181	A→C	11.5%	intergenic (‑138/+99)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,183	C→T	9.9%	intergenic (‑140/+97)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,187	A→G	13.9%	intergenic (‑144/+93)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,887,201:1	+A	5.3%	coding (1290/1356 nt)	uacT →	uric acid permease
RA	4,887,206	Δ1 bp	5.3%	coding (1295/1356 nt)	uacT →	uric acid permease
RA	4,891,142	A→T	5.4%	intergenic (+27/+96)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,143	A→T	6.0%	intergenic (+28/+95)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,159	A→G	6.4%	intergenic (+44/+79)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,160	T→A	5.2%	intergenic (+45/+78)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,162	A→T	5.9%	intergenic (+47/+76)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,168	T→A	7.7%	intergenic (+53/+70)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,169	G→C	5.9%	intergenic (+54/+69)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,171	C→T	5.3%	intergenic (+56/+67)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,173	G→C	5.3%	intergenic (+58/+65)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,177	G→C	5.5%	intergenic (+62/+61)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,178	T→A	5.6%	intergenic (+63/+60)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,184	A→T	6.9%	intergenic (+69/+54)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,186	T→A	5.3%	intergenic (+71/+52)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,187	C→T	5.9%	intergenic (+72/+51)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,894,579	T→G	9.5%	intergenic (+31/‑122)	hyi → / → glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
RA	4,901,393	T→C	9.6%	intergenic (+32/‑176)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,901,416	T→C	8.1%	intergenic (+55/‑153)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,901,419	G→A	8.2%	intergenic (+58/‑150)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,901,439	G→A	9.0%	intergenic (+78/‑130)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,905,045	G→A	5.7%	intergenic (+12/‑486)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,905,059	A→G	16.3%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,905,063	G→A	14.6%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,905,064	T→C	14.8%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,905,068	C→T	15.8%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,914,915	C→G	8.6%	intergenic (+314/+165)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,914,916	C→G	8.6%	intergenic (+315/+164)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,922,959	G→A	5.5%	V122I (GTC→ATC) ‡	PP_4328 →	hypothetical protein
RA	4,922,960	T→C	5.3%	V122A (GTC→GCC) ‡	PP_4328 →	hypothetical protein
RA	4,955,966	T→G	15.2%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,955,967	C→A	12.0%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,963,588	T→G	6.6%	M36L (ATG→CTG)	fliG ←	flagellar motor switch protein
RA	4,963,593	C→T	6.1%	R34Q (CGG→CAG)	fliG ←	flagellar motor switch protein
RA	4,963,596	A→G	6.2%	L33P (CTG→CCG)	fliG ←	flagellar motor switch protein
RA	4,963,601	C→A	6.2%	Q31H (CAG→CAT)	fliG ←	flagellar motor switch protein
RA	5,002,598	C→A	5.4%	R167L (CGG→CTG)	PP_4405 ←	sensory box protein
RA	5,002,601	T→G	5.4%	Q166P (CAG→CCG)	PP_4405 ←	sensory box protein
RA	5,035,745	A→G	5.8%	intergenic (+34/‑461)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,035,748	C→T	5.7%	intergenic (+37/‑458)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,046,246	T→A	5.2%	intergenic (+227/‑435)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,082,231	G→T	6.4%	intergenic (+29/+79)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,082,234	A→C	6.3%	intergenic (+32/+76)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,084,123	T→A	6.6%	intergenic (‑371/+26)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,084,126	T→A	7.0%	intergenic (‑374/+23)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,084,426	G→T	7.8%	intergenic (‑51/+24)	PP_t55 ← / ← PP_t54	tRNA‑Arg/tRNA‑Arg
RA	5,084,593	A→T	5.6%	intergenic (‑67/+5)	PP_t54 ← / ← PP_t53	tRNA‑Arg/tRNA‑Arg
RA	5,097,573	G→A	5.1%	intergenic (‑272/+65)	astC ← / ← PP_4482	acetylornithine aminotransferase/AraC family transcriptional regulator
RA	5,097,574	G→C	5.3%	intergenic (‑273/+64)	astC ← / ← PP_4482	acetylornithine aminotransferase/AraC family transcriptional regulator
RA	5,102,219	G→C	8.9%	intergenic (+213/+79)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,222	G→T	9.9%	intergenic (+216/+76)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,228	G→C	8.9%	intergenic (+222/+70)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,229	G→T	9.4%	intergenic (+223/+69)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,231	Δ1 bp	8.6%	intergenic (+225/+67)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,235:1	+G	8.8%	intergenic (+229/+63)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,237	A→C	10.0%	intergenic (+231/+61)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,238	G→C	8.9%	intergenic (+232/+60)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,244	A→C	11.5%	intergenic (+238/+54)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,247	G→C	8.7%	intergenic (+241/+51)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,104,932	T→G	9.3%	intergenic (+21/+132)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,130,163	A→G	9.6%	intergenic (+140/‑42)	PP_4511 → / → PP_4512	AraC family transcriptional regulator/DMT superfamily permease
RA	5,167,593	T→G	8.0%	intergenic (+119/+82)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,167,594	A→T	7.4%	intergenic (+120/+81)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,167,595	T→A	7.2%	intergenic (+121/+80)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,167,623	A→T	5.2%	intergenic (+149/+52)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,178,241	T→C	17.4%	intergenic (‑285/+47)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,178,244	G→C	16.6%	intergenic (‑288/+44)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,178,245	G→C	16.6%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,178,248	G→A	16.2%	intergenic (‑292/+40)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,186,143	A→T	6.1%	L266H (CTC→CAC)	PP_4560 ←	ribonuclease BN
RA	5,186,146	A→T	6.2%	L265Q (CTG→CAG)	PP_4560 ←	ribonuclease BN
RA	5,186,149	A→T	6.2%	L264Q (CTG→CAG)	PP_4560 ←	ribonuclease BN
RA	5,186,152	A→T	6.2%	V263E (GTG→GAG)	PP_4560 ←	ribonuclease BN
RA	5,186,157	Δ1 bp	5.4%	coding (783/957 nt)	PP_4560 ←	ribonuclease BN
RA	5,187,056	G→T	12.7%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,187,062	T→G	18.5%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,187,063	C→A	17.6%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,187,069	A→C	12.5%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,187,843	T→G	5.4%	R112R (CGT→CGG)	PP_4562 →	hypothetical protein
RA	5,192,969	A→T	5.0%	E159D (GAA→GAT)	PP_4567 →	hypothetical protein
RA	5,192,976	T→G	5.8%	L162V (TTG→GTG) ‡	PP_4567 →	hypothetical protein
RA	5,192,977	T→C	5.7%	L162S (TTG→TCG) ‡	PP_4567 →	hypothetical protein
RA	5,192,980	G→A	5.8%	R163H (CGC→CAC) ‡	PP_4567 →	hypothetical protein
RA	5,192,981	C→A	5.7%	R163R (CGC→CGA) ‡	PP_4567 →	hypothetical protein
RA	5,192,988	A→T	5.7%	I166F (ATC→TTC)	PP_4567 →	hypothetical protein
RA	5,197,756	T→G	7.6%	intergenic (+140/‑62)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,197,759	T→G	5.5%	intergenic (+143/‑59)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,197,764	C→G	6.1%	intergenic (+148/‑54)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,199,884	T→G	11.7%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,199,885	C→A	11.4%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,200,982	G→A	5.1%	S177L (TCG→TTG) ‡	ybgJ ←	allophanate hydrolase subunit 1
RA	5,200,983	A→G	5.0%	S177P (TCG→CCG) ‡	ybgJ ←	allophanate hydrolase subunit 1
RA	5,200,986	C→T	5.1%	V176I (GTA→ATA)	ybgJ ←	allophanate hydrolase subunit 1
RA	5,200,987	T→C	5.2%	A175A (GCA→GCG)	ybgJ ←	allophanate hydrolase subunit 1
RA	5,204,642	G→C	7.5%	intergenic (+20/+53)	PP_4579 → / ← PP_4580	LysR family transcriptional regulator/hypothetical protein
RA	5,215,266	C→G	5.7%	intergenic (‑135/+43)	rnd ← / ← PP_4592	ribonuclease D/metal dependent hydrolase
RA	5,215,276	C→G	6.3%	intergenic (‑145/+33)	rnd ← / ← PP_4592	ribonuclease D/metal dependent hydrolase
RA	5,217,484	A→G	7.5%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,485	C→A	7.5%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,488	T→G	8.0%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,489	C→T	7.4%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,234,176	G→A	5.9%	intergenic (‑121/+55)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,188	Δ1 bp	12.5%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,192	C→G	12.8%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,195	C→G	12.9%	intergenic (‑140/+36)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,198:1	+C	13.4%	intergenic (‑143/+33)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,210	T→C	6.8%	intergenic (‑155/+21)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,243,659	T→A	6.4%	A58A (GCT→GCA)	PP_5701 →	hypothetical protein
RA	5,244,881	G→A	5.8%	A144V (GCG→GTG)	ldh ←	leucine dehydrogenase
RA	5,244,886	T→C	5.8%	P142P (CCA→CCG)	ldh ←	leucine dehydrogenase
RA	5,261,933	T→A	6.3%	Q289L (CAG→CTG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,262,686	A→C	5.6%	V38G (GTG→GGG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,262,693	G→C	6.3%	P36A (CCG→GCG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,262,694	G→C	6.6%	R35R (CGC→CGG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,262,701	G→T	5.7%	P33H (CCC→CAC)	PP_4634 ←	alpha/beta family hydrolase
RA	5,273,948	T→A	8.5%	intergenic (+19/+17)	PP_4643 → / ← radA	xanthine/uracil permease family protein/DNA repair enzyme
RA	5,273,949	T→A	9.0%	intergenic (+20/+16)	PP_4643 → / ← radA	xanthine/uracil permease family protein/DNA repair enzyme
RA	5,279,042	C→G	10.1%	intergenic (+67/+39)	rlmG → / ← PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
RA	5,279,054	C→G	11.1%	intergenic (+79/+27)	rlmG → / ← PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
RA	5,285,962	T→A	5.4%	intergenic (+98/+40)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,285,963	T→A	5.4%	intergenic (+99/+39)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,294,586	A→T	6.6%	L246H (CTC→CAC)	PP_4663 ←	transmembrane protein
RA	5,302,235	A→T	6.3%	L42H (CTC→CAC)	TpbB ←	diguanylate cyclase
RA	5,302,238	A→T	5.3%	V41E (GTG→GAG)	TpbB ←	diguanylate cyclase
RA	5,318,273	C→G	6.5%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,318,276	C→G	7.2%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,334,393	T→A	5.3%	L10Q (CTG→CAG)	PP_4690 →	Rieske 2Fe‑2S family protein
RA	5,337,242	C→G	6.1%	intergenic (+28/‑21)	dksA → / → gluQ	RNA polymerase‑binding transcription factor DksA/glutamyl‑Q tRNA(Asp) synthetase
RA	5,338,190	G→A	8.0%	intergenic (+25/‑218)	gluQ → / → PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
RA	5,338,191	C→T	6.4%	intergenic (+26/‑217)	gluQ → / → PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
RA	5,343,035	A→G	8.7%	intergenic (+45/‑239)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,343,047	C→G	10.8%	intergenic (+57/‑227)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,343,050	C→G	10.2%	intergenic (+60/‑224)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,349,458:1	+C	11.2%	intergenic (+36/‑142)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,458:2	+T	11.2%	intergenic (+36/‑142)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,464	C→G	19.8%	intergenic (+42/‑136)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,468	C→T	20.3%	intergenic (+46/‑132)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,477	A→G	21.2%	intergenic (+55/‑123)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,481	C→G	23.9%	intergenic (+59/‑119)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,486	Δ1 bp	18.1%	intergenic (+64/‑114)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,487	Δ1 bp	17.4%	intergenic (+65/‑113)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,395,428	T→G	5.5%	intergenic (+520/‑202)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,423,815	G→T	5.7%	P85T (CCT→ACT)	PP_4758 ←	MFS transporter
RA	5,423,816	T→A	5.7%	V84V (GTA→GTT) ‡	PP_4758 ←	MFS transporter
RA	5,423,817	A→C	5.8%	V84G (GTA→GGA) ‡	PP_4758 ←	MFS transporter
RA	5,432,912	A→T	5.2%	L63Q (CTG→CAG)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,435,389	A→G	10.3%	intergenic (‑74/+87)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,393	A→G	10.1%	intergenic (‑78/+83)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,394:1	+A	10.2%	intergenic (‑79/+82)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,401	Δ1 bp	9.7%	intergenic (‑86/+75)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,403	C→T	9.7%	intergenic (‑88/+73)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,407	C→T	9.9%	intergenic (‑92/+69)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,451,286	T→G	12.5%	L145R (CTG→CGG)	thiE →	thiamine‑phosphate synthase
RA	5,451,292	A→C	9.5%	E147A (GAG→GCG)	thiE →	thiamine‑phosphate synthase
RA	5,451,295	A→C	13.3%	Q148P (CAG→CCG)	thiE →	thiamine‑phosphate synthase
RA	5,451,307	A→C	6.0%	Q152P (CAG→CCG)	thiE →	thiamine‑phosphate synthase
RA	5,463,889:1	+A	7.6%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,463,895	Δ1 bp	8.1%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,464,557	T→G	7.6%	intergenic (+18/‑22)	PP_4795 → / → holA	lipoprotein/DNA polymerase III subunit delta
RA	5,467,390	T→G	5.1%	intergenic (+16/+18)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,467,391	G→C	5.4%	intergenic (+17/+17)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,467,392	C→A	5.3%	intergenic (+18/+16)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,477,974	A→G	5.4%	V193A (GTG→GCG)	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,477,979	A→T	5.2%	L191L (CTT→CTA) ‡	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,477,980	A→T	5.2%	L191H (CTT→CAT) ‡	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,477,985	C→T	5.4%	T189T (ACG→ACA)	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,490,147	A→G	14.6%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,150	A→G	16.1%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,151	T→C	14.4%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,156	G→A	15.9%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,159	T→C	16.8%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,164	G→A	15.3%	intergenic (+73/‑74)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,165	C→T	14.1%	intergenic (+74/‑73)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,168	C→T	14.0%	intergenic (+77/‑70)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,508,139	C→G	5.4%	A31G (GCC→GGC)	oprC →	copper receptor OprC
RA	5,508,146	T→G	5.0%	P33P (CCT→CCG)	oprC →	copper receptor OprC
RA	5,514,893	A→C	7.8%	Q32P (CAG→CCG)	urtB →	urea ABC transporter permease
RA	5,514,902	T→G	10.0%	L35R (CTG→CGG)	urtB →	urea ABC transporter permease
RA	5,527,788	T→A	5.4%	intergenic (+25/+15)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,527,789	T→A	5.3%	intergenic (+26/+14)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,527,790	T→A	5.5%	intergenic (+27/+13)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,527,791	T→A	5.2%	intergenic (+28/+12)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,542,055	A→G	14.1%	intergenic (+35/+68)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,058	A→T	20.9%	intergenic (+38/+65)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,059	G→C	13.8%	intergenic (+39/+64)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,064	A→G	20.3%	intergenic (+44/+59)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,065	A→G	14.2%	intergenic (+45/+58)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,066	C→T	14.9%	intergenic (+46/+57)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,067	C→T	14.2%	intergenic (+47/+56)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,072	G→C	22.5%	intergenic (+52/+51)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,073	A→T	14.2%	intergenic (+53/+50)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,076	C→T	12.9%	intergenic (+56/+47)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,554,602	T→A	5.3%	intergenic (+18/‑154)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,554,603	T→A	5.4%	intergenic (+19/‑153)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,554,651	T→G	5.5%	intergenic (+67/‑105)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,557,910	T→G	11.4%	intergenic (+576/+85)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,557,911	T→A	8.2%	intergenic (+577/+84)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,557,912	C→A	15.0%	intergenic (+578/+83)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,560,601	T→A	5.2%	intergenic (‑80/+94)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,619,055	A→T	5.6%	intergenic (+37/+45)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,619,056	A→T	5.6%	intergenic (+38/+44)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,619,063	C→T	5.4%	intergenic (+45/+37)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,639,457	T→G	5.1%	intergenic (+33/+350)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,639,458	C→A	5.1%	intergenic (+34/+349)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,648,261	G→A	11.4%	intergenic (+46/‑77)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,262	C→T	11.1%	intergenic (+47/‑76)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,263	A→G	11.2%	intergenic (+48/‑75)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,267	A→C	11.1%	intergenic (+52/‑71)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,270	G→T	11.0%	intergenic (+55/‑68)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,274	C→T	10.8%	intergenic (+59/‑64)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,275	A→G	10.7%	intergenic (+60/‑63)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,276	T→C	10.2%	intergenic (+61/‑62)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,290	G→A	7.5%	intergenic (+75/‑48)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,653,980	G→A	5.6%	A29V (GCG→GTG) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,653,981	C→G	5.7%	A29P (GCG→CCG) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,653,982	C→G	6.2%	Q28H (CAG→CAC) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,653,983	T→C	5.5%	Q28R (CAG→CGG) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,657,937	T→G	8.5%	intergenic (‑38/+123)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,959	G→A	9.7%	intergenic (‑60/+101)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,960	T→G	9.2%	intergenic (‑61/+100)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,963	A→T	12.8%	intergenic (‑64/+97)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,965	T→C	9.8%	intergenic (‑66/+95)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,966	G→A	9.7%	intergenic (‑67/+94)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,968	A→T	14.4%	intergenic (‑69/+92)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,971	C→A	10.9%	intergenic (‑72/+89)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,972	T→C	10.5%	intergenic (‑73/+88)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,660,626:1	+A	20.6%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,631	T→G	27.9%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,636	C→A	29.9%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,641	Δ1 bp	25.6%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,665,182	G→T	10.0%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,665,185	A→C	10.0%	intergenic (+38/‑191)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,689,809	G→C	5.2%	R697G (CGC→GGC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,689,811	C→T	5.2%	R696H (CGC→CAC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,689,814	T→A	5.2%	D695V (GAC→GTC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,689,817	A→G	5.0%	V694A (GTG→GCG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,689,819	G→C	5.0%	A693A (GCC→GCG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
JC	5,701,573	Δ61 bp	9.8%	intergenic (+20/‑132)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,701,641	G→T	7.8%	intergenic (+88/‑124)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,703,797	G→A	5.6%	intergenic (+82/‑85)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,709,548	C→A	5.2%	intergenic (+68/+44)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,729,289	A→C	5.7%	intergenic (‑186/+108)	PP_5024 ← / ← opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
RA	5,729,306	T→G	14.5%	intergenic (‑203/+91)	PP_5024 ← / ← opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
RA	5,739,066	A→T	9.7%	intergenic (‑87/+70)	proY ← / ← hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
RA	5,739,101	C→T	6.7%	intergenic (‑122/+35)	proY ← / ← hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
RA	5,742,604	G→C	5.8%	intergenic (‑154/+48)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,742,607	G→C	6.1%	intergenic (‑157/+45)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,745,462	G→A	15.3%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,472	T→G	31.6%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,475	A→T	27.0%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,476	A→T	27.4%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,479	C→A	24.8%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,748,336	G→A	10.1%	intergenic (‑164/+83)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,340	T→C	9.6%	intergenic (‑168/+79)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,356	A→C	8.2%	intergenic (‑184/+63)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,365	C→T	7.5%	intergenic (‑193/+54)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,367	T→C	7.5%	intergenic (‑195/+52)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,368	G→A	7.0%	intergenic (‑196/+51)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,370	A→G	7.3%	intergenic (‑198/+49)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,378	A→C	5.6%	intergenic (‑206/+41)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,751,490	G→C	6.4%	intergenic (+32/+67)	PP_5042 → / ← PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
RA	5,751,493	G→C	5.9%	intergenic (+35/+64)	PP_5042 → / ← PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
RA	5,756,724	G→T	12.1%	intergenic (‑157/‑314)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,730	A→G	16.7%	intergenic (‑163/‑308)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,734	G→T	16.9%	intergenic (‑167/‑304)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,735	G→T	17.4%	intergenic (‑168/‑303)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,740	A→C	16.2%	intergenic (‑173/‑298)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,741	A→C	16.1%	intergenic (‑174/‑297)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,745	C→T	15.6%	intergenic (‑178/‑293)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,751	A→C	12.6%	intergenic (‑184/‑287)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,764,501	G→A	5.3%	intergenic (+105/+51)	trmL → / ← secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
RA	5,764,521	C→T	8.1%	intergenic (+125/+31)	trmL → / ← secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
RA	5,764,523	G→T	8.0%	intergenic (+127/+29)	trmL → / ← secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
RA	5,764,524	A→C	8.2%	intergenic (+128/+28)	trmL → / ← secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
RA	5,764,526	A→G	7.9%	intergenic (+130/+26)	trmL → / ← secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
RA	5,795,148	A→T	6.3%	intergenic (+22/+46)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,155	A→G	6.2%	intergenic (+29/+39)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,156	C→G	6.3%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,157	C→T	6.3%	intergenic (+31/+37)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,164	A→T	6.6%	intergenic (+38/+30)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,812,989	A→G	6.1%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,812,990	T→C	6.6%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,812,991	G→A	6.2%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,812,992	C→T	6.6%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,820,536	C→T	7.9%	intergenic (+15/+76)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,820,541	G→T	7.5%	intergenic (+20/+71)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,820,544	A→C	8.1%	intergenic (+23/+68)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,820,549	A→G	7.2%	intergenic (+28/+63)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,821,858	A→G	8.4%	intergenic (+39/+90)	PP_5092 → / ← pilT	NLP/P60 protein/twitching motility protein
RA	5,854,051	C→T	7.1%	intergenic (+21/‑250)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,854,052	C→G	6.6%	intergenic (+22/‑249)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,854,053	A→G	6.5%	intergenic (+23/‑248)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,862,970	C→G	5.0%	R172G (CGG→GGG)	PP_5134 →	hypothetical protein
RA	5,871,701	G→T	6.9%	intergenic (+19/+38)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,871,702	A→C	6.8%	intergenic (+20/+37)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,875,317	A→T	6.1%	intergenic (+73/+61)	PP_5144 → / ← ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
RA	5,875,332	A→T	10.1%	intergenic (+88/+46)	PP_5144 → / ← ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
RA	5,895,797	A→T	5.1%	intergenic (+80/+40)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,902,775	A→G	19.1%	intergenic (‑170/+64)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,778	G→A	17.9%	intergenic (‑173/+61)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,783	C→G	18.8%	intergenic (‑178/+56)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,784	G→C	18.8%	intergenic (‑179/+55)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,787	G→C	18.6%	intergenic (‑182/+52)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,788	C→G	18.1%	intergenic (‑183/+51)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,793	T→C	18.0%	intergenic (‑188/+46)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,796	C→T	16.9%	intergenic (‑191/+43)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,908,153	G→A	6.2%	intergenic (‑112/‑156)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,908,169	G→T	12.2%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,908,170	A→C	18.2%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,908,836	G→A	7.5%	intergenic (+87/+20)	PP_5176 → / ← spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
RA	5,919,129	C→T	5.8%	intergenic (+16/+137)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,919,131	C→G	5.8%	intergenic (+18/+135)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,919,133	A→G	6.7%	intergenic (+20/+133)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,919,178	A→G	5.4%	intergenic (+65/+88)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,929,556	A→C	14.1%	intergenic (‑121/+76)	gcvP‑II ← / ← gcvH‑II	glycine dehydrogenase/glycine cleavage system protein H
RA	5,929,596	A→T	7.1%	intergenic (‑161/+36)	gcvP‑II ← / ← gcvH‑II	glycine dehydrogenase/glycine cleavage system protein H
RA	5,932,952	C→A	11.6%	intergenic (‑53/+100)	PP_5195 ← / ← fbpA	iron ABC transporter permease/iron ABC transporter substrate‑binding protein
RA	5,932,960	T→A	6.5%	intergenic (‑61/+92)	PP_5195 ← / ← fbpA	iron ABC transporter permease/iron ABC transporter substrate‑binding protein
RA	5,940,561	T→C	5.5%	S193P (TCG→CCG) ‡	fau →	5‑formyltetrahydrofolate cyclo‑ligase
RA	5,940,562	C→G	6.7%	S193W (TCG→TGG) ‡	fau →	5‑formyltetrahydrofolate cyclo‑ligase
RA	5,965,000	A→T	6.9%	noncoding (74/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,965,001	A→T	7.0%	noncoding (73/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,970,576	A→C	5.1%	intergenic (+69/+31)	had → / ← PP_5232	(S)‑2‑haloacid dehalogenase/hypothetical protein
RA	5,970,578	C→T	5.1%	intergenic (+71/+29)	had → / ← PP_5232	(S)‑2‑haloacid dehalogenase/hypothetical protein
RA	5,970,579	G→C	5.0%	intergenic (+72/+28)	had → / ← PP_5232	(S)‑2‑haloacid dehalogenase/hypothetical protein
RA	5,970,580	A→G	5.0%	intergenic (+73/+27)	had → / ← PP_5232	(S)‑2‑haloacid dehalogenase/hypothetical protein
RA	5,970,582	G→T	5.3%	intergenic (+75/+25)	had → / ← PP_5232	(S)‑2‑haloacid dehalogenase/hypothetical protein
RA	5,989,441	T→C	28.2%	intergenic (+32/+57)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,447	G→A	26.6%	intergenic (+38/+51)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,449	T→C	26.2%	intergenic (+40/+49)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,452	G→A	24.9%	intergenic (+43/+46)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,454	T→C	25.9%	intergenic (+45/+44)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,460	G→A	23.6%	intergenic (+51/+38)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,993,814	G→A	26.6%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,824	T→C	27.5%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,829	C→T	26.5%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,830	G→T	26.2%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,831	C→T	26.5%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,834	A→G	25.6%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,840	G→C	26.6%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,842	C→G	27.0%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,845	C→T	26.5%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,849	C→G	28.3%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,853	C→T	28.7%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,855	C→T	28.1%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,894	C→A	26.4%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,899	C→T	28.0%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,900	A→G	28.1%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,910	T→C	31.2%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,916	Δ1 bp	31.0%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	6,002,194:1	+G	15.8%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,002,199	Δ1 bp	15.4%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,005,926	C→A	6.4%	intergenic (+28/+81)	PP_5256 → / ← amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
RA	6,009,992	T→G	12.0%	intergenic (+25/‑151)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,009,999	G→C	16.3%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,010,002	A→T	16.2%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,010,005	G→C	15.4%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,010,012	C→A	9.3%	intergenic (+45/‑131)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,014,144:1	+G	18.7%	intergenic (+36/+46)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,148	T→C	15.0%	intergenic (+40/+42)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,149	T→C	15.1%	intergenic (+41/+41)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,154	G→A	15.9%	intergenic (+46/+36)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,155	G→A	15.7%	intergenic (+47/+35)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,018,841	G→A	20.5%	intergenic (+41/+69)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,843	A→G	20.7%	intergenic (+43/+67)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,850	G→C	20.6%	intergenic (+50/+60)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,851	T→G	24.3%	intergenic (+51/+59)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,852	C→T	21.4%	intergenic (+52/+58)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,857	A→G	19.8%	intergenic (+57/+53)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,858	C→A	20.6%	intergenic (+58/+52)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,859	G→C	20.2%	intergenic (+59/+51)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,866	C→T	18.7%	intergenic (+66/+44)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,868	T→C	19.2%	intergenic (+68/+42)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,024,284	A→C	7.2%	intergenic (‑80/+65)	dadX ← / ← dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
RA	6,028,164	G→A	6.9%	intergenic (+74/+70)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,028,165	T→C	6.9%	intergenic (+75/+69)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,037,790	C→T	6.8%	intergenic (+49/+87)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,793	Δ1 bp	5.4%	intergenic (+52/+84)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,794	C→A	5.2%	intergenic (+53/+83)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,798	G→C	5.8%	intergenic (+57/+79)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,800:1	+G	5.3%	intergenic (+59/+77)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,802	T→C	5.3%	intergenic (+61/+75)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,805	A→G	5.9%	intergenic (+64/+72)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,045,799	T→A	6.8%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein
RA	6,048,671	T→A	5.3%	intergenic (+18/+16)	gmk → / ← PP_5297	deoxyguanylate kinase/guanylate kinase/amino acid transporter
RA	6,055,789	A→G	7.8%	E549G (GAA→GGA)	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,055,795	T→A	7.4%	L551Q (CTG→CAG)	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,065,450	T→G	6.5%	intergenic (+81/+100)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,085,993	T→A	9.1%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,085,994	T→A	8.9%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,094,949	T→A	5.4%	intergenic (+19/+13)	potF‑IV → / ← PP_5342	putrescine‑binding protein/GntR family transcriptional regulator
RA	6,094,950	T→A	5.2%	intergenic (+20/+12)	potF‑IV → / ← PP_5342	putrescine‑binding protein/GntR family transcriptional regulator
RA	6,131,950	C→T	5.6%	intergenic (+36/+31)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,951	A→G	5.5%	intergenic (+37/+30)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,952	T→A	6.6%	intergenic (+38/+29)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,953	C→T	5.4%	intergenic (+39/+28)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,954	A→G	5.4%	intergenic (+40/+27)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	86750 =	154 (0.480)	26 (0.090)	13/240	NT	16.2%	intergenic (‑33/+112)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	86841 =	133 (0.470)					intergenic (‑124/+21)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	= 86765	151 (0.480)	13 (0.050)	7/240	NT	8.9%	intergenic (‑48/+97)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	= 86824	133 (0.470)					intergenic (‑107/+38)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	= 90374	205 (0.650)	35 (0.120)	17/240	NT	15.6%	intergenic (+49/+73)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
	?	NC_002947	= 90397	199 (0.710)					intergenic (+72/+50)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
*	?	NC_002947	100443 =	205 (0.650)	13 (0.050)	5/238	NT	6.1%	intergenic (‑35/+87)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	100525 =	220 (0.790)					intergenic (‑117/+5)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
*	?	NC_002947	= 100459	210 (0.660)	15 (0.050)	8/238	NT	6.9%	intergenic (‑51/+71)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	= 100507	220 (0.790)					intergenic (‑99/+23)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
*	?	NC_002947	235331 =	173 (0.540)	35 (0.120)	18/240	NT	18.4%	intergenic (+28/+97)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235390 =	157 (0.560)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
*	?	NC_002947	= 235346	168 (0.530)	13 (0.050)	10/240	NT	7.8%	intergenic (+43/+82)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	= 235373	157 (0.560)					intergenic (+70/+55)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
*	?	NC_002947	295700 =	211 (0.660)	32 (0.110)	20/244	NT	13.6%	intergenic (+47/+95)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
	?	NC_002947	295759 =	219 (0.770)					intergenic (+106/+36)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
*	?	NC_002947	= 295713	207 (0.650)	16 (0.060)	13/244	NT	7.3%	intergenic (+60/+82)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
	?	NC_002947	= 295744	219 (0.770)					intergenic (+91/+51)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
*	?	NC_002947	= 312731	199 (0.630)	21 (0.070)	7/244	NT	10.1%	coding (483/831 nt)	fdhD	protein sulfur transferase
	?	NC_002947	= 312759	197 (0.690)					coding (455/831 nt)	fdhD	protein sulfur transferase
*	?	NC_002947	356668 =	333 (1.050)	19 (0.090) +48 bp	6/176	NT	10.8%	coding (10/1377 nt)	tdcG‑I	L‑serine dehydratase
	?	NC_002947	= 1131611	151 (0.480)					intergenic (‑111/+39)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
*	?	NC_002947	380836 =	158 (0.500)	17 (0.060)	11/226	NT	14.4%	intergenic (+23/+86)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	380916 =	71 (0.270)					intergenic (+103/+6)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 383376	218 (0.690)	20 (0.070)	10/246	NT	9.2%	intergenic (+33/‑150)	PP_0319/PP_0320	hypothetical protein/methyl‑accepting chemotaxis transducer
	?	NC_002947	= 383420	197 (0.690)					intergenic (+77/‑106)	PP_0319/PP_0320	hypothetical protein/methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 401316	NA (NA)	31 (0.110)	17/246	NT	17.3%	coding (899/1059 nt)	PP_0334	transposase
	?	NC_002947	= 401372	164 (0.520)					coding (955/1059 nt)	PP_0334	transposase
*	?	NC_002947	401317 =	106 (0.330)	35 (0.120)	13/246	NT	21.5%	coding (900/1059 nt)	PP_0334	transposase
	?	NC_002947	401373 =	160 (0.560)					coding (956/1059 nt)	PP_0334	transposase
*	?	NC_002947	401755 =	195 (0.610)	23 (0.070)	14/270	NT	9.6%	intergenic (+279/+150)	PP_0334/PP_0335	transposase/glutathione S‑transferase family protein
	?	NC_002947	401837 =	238 (0.750)					intergenic (+361/+68)	PP_0334/PP_0335	transposase/glutathione S‑transferase family protein
*	?	NC_002947	413997 =	232 (0.730)	35 (0.140)	16/216	NT	22.9%	intergenic (+14/‑189)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
	?	NC_002947	414083 =	52 (0.210)					intergenic (+100/‑103)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
*	?	NC_002947	478264 =	232 (0.730)	27 (0.110)	15/212	NT	15.8%	intergenic (+9/+101)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478359 =	108 (0.440)					intergenic (+104/+6)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
*	?	NC_002947	611395 =	NA (NA)	4 (0.010)	3/258	NT	NA	coding (289/966 nt)	PP_0526	transposase
	?	NC_002947	611483 =	NA (NA)					coding (377/966 nt)	PP_0526	transposase
*	?	NC_002947	611507 =	NA (NA)	20 (0.070)	12/258	NT	NA	coding (401/966 nt)	PP_0526	transposase
	?	NC_002947	611536 =	NA (NA)					coding (430/966 nt)	PP_0526	transposase
*	?	NC_002947	= 742614	NA (NA)	9 (0.030)	5/262	NT	NA	coding (712/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 1431801	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 742796	NA (NA)	5 (0.020)	4/258	NT	NA	coding (894/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 742822	NA (NA)					coding (920/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	742918 =	NA (NA)	25 (0.080)	15/260	NT	NA	coding (1016/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	742948 =	NA (NA)					coding (1046/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	744925 =	NA (NA)	322 (1.020)	147/270	NT	97.9%	intergenic (‑587/+44)	PP_0636/PP_0637	cold shock DNA‑binding domain‑containing protein/transposase
	?	NC_002947	2559164 =	7 (0.020)					coding (153/1881 nt)	PP_2240	ABC transporter permease/ATP‑binding protein
*	?	NC_002947	= 746421	NA (NA)	15 (0.050)	7/262	NT	NA	coding (81/1533 nt)	PP_0637	transposase
	?	NC_002947	= 746467	NA (NA)					coding (35/1533 nt)	PP_0637	transposase
*	?	NC_002947	867938 =	158 (0.500)	22 (0.080)	12/242	NT	13.2%	intergenic (+33/+144)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	867998 =	148 (0.520)					intergenic (+93/+84)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	= 867952	155 (0.490)	27 (0.100)	6/242	NT	15.9%	intergenic (+47/+130)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	= 867982	148 (0.520)					intergenic (+77/+100)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	967853 =	245 (0.770)	21 (0.070)	9/242	NT	8.5%	intergenic (‑29/+139)	PP_0830/PP_0831	acetyltransferase/hypothetical protein
	?	NC_002947	967944 =	232 (0.820)					intergenic (‑120/+48)	PP_0830/PP_0831	acetyltransferase/hypothetical protein
*	?	NC_002947	1030219 =	184 (0.580)	22 (0.090)	12/218	NT	15.6%	intergenic (‑121/+108)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1030312 =	91 (0.360)					intergenic (‑214/+15)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	= 1088096	315 (0.990)	19 (0.060)	11/256	NT	6.0%	coding (2797/3822 nt)	PP_0938	hypothetical protein
	?	NC_002947	= 1088120	301 (1.010)					coding (2821/3822 nt)	PP_0938	hypothetical protein
*	?	NC_002947	1119824 =	144 (0.450)	31 (0.120)	14/222	NT	24.6%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1119900 =	72 (0.280)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	= 1154881	241 (0.760)	13 (0.040) +C	8/270	NT	5.9%	intergenic (‑173/+84)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	2076160 =	175 (0.550)					intergenic (+120/+107)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
*	?	NC_002947	1154883 =	239 (0.750)	21 (0.070)	12/248	NT	10.3%	intergenic (‑175/+82)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	1154944 =	148 (0.510)					intergenic (‑236/+21)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
*	?	NC_002947	= 1173536	249 (0.780)	13 (0.050)	6/236	NT	5.9%	intergenic (+98/+155)	eda/leuA	KHG/KDPG aldolase/2‑isopropylmalate synthase
	?	NC_002947	= 1173609	198 (0.720)					intergenic (+171/+82)	eda/leuA	KHG/KDPG aldolase/2‑isopropylmalate synthase
*	?	NC_002947	1278205 =	226 (0.710)	13 (0.050)	11/242	NT	6.1%	intergenic (+41/+127)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	1278294 =	198 (0.700)					intergenic (+130/+38)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
*	?	NC_002947	= 1278219	233 (0.730)	15 (0.050)	11/242	NT	6.9%	intergenic (+55/+113)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	= 1278278	198 (0.700)					intergenic (+114/+54)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
*	?	NC_002947	= 1301745	NA (NA)	4 (0.010)	3/258	NT	NA	intergenic (‑543/‑23)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	= 1301769	NA (NA)					coding (2/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1303018	NA (NA)	35 (0.110)	10/264	NT	NA	coding (1251/1329 nt)	PP_1133	transposase
	?	NC_002947	= 1303052	NA (NA)					coding (1285/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1316674	132 (0.420)	10 (0.030)	7/246	NT	6.8%	intergenic (‑187/+91)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	= 1316733	154 (0.540)					intergenic (‑246/+32)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
*	?	NC_002947	1414033 =	152 (0.480)	17 (0.060)	12/236	NT	12.6%	intergenic (+22/‑253)	PP_1230/nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit
	?	NC_002947	1414095 =	103 (0.370)					intergenic (+84/‑191)	PP_1230/nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit
*	?	NC_002947	1424502 =	50 (0.160)	39 (0.160)	15/208	NT	51.9%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1424596 =	34 (0.140)					intergenic (‑130/+7)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1424533	45 (0.140)	21 (0.090)	11/208	NT	38.0%	intergenic (‑67/+70)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1424563	34 (0.140)					intergenic (‑97/+40)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1431770	NA (NA)	43 (0.140)	13/262	NT	NA	coding (712/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1431801	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	1441052 =	283 (0.890)	21 (0.070) +A	10/270	NT	7.7%	intergenic (‑133/+20)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	2962069 =	225 (0.710)					intergenic (+32/‑164)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
*	?	NC_002947	1491962 =	61 (0.190)	46 (0.190)	17/212	NT	47.8%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1492052 =	53 (0.210)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	= 1491991	58 (0.180)	15 (0.060)	13/212	NT	23.4%	intergenic (+51/+79)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	= 1492021	53 (0.210)					intergenic (+81/+49)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	1504392 =	83 (0.260)	21 (0.080)	14/226	NT	24.1%	intergenic (+13/‑153)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	1504475 =	63 (0.240)					intergenic (+96/‑70)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	= 1504414	76 (0.240)	13 (0.050)	8/226	NT	17.1%	intergenic (+35/‑131)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 1504451	63 (0.240)					intergenic (+72/‑94)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	1536737 =	83 (0.260)	21 (0.080)	15/224	NT	21.5%	coding (130/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	1536833 =	85 (0.320)					coding (34/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	= 1536760	77 (0.240)	21 (0.080)	15/224	NT	22.1%	coding (107/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	= 1536808	85 (0.320)					coding (59/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	1575392 =	157 (0.490)	29 (0.110)	17/220	NT	25.4%	intergenic (+9/‑179)	pcaF‑I/pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
	?	NC_002947	1575470 =	43 (0.170)					intergenic (+87/‑101)	pcaF‑I/pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
*	?	NC_002947	1736154 =	77 (0.240)	20 (0.080)	11/216	NT	22.2%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1736246 =	79 (0.310)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1736181	78 (0.250)	13 (0.050)	11/216	NT	15.6%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1736217	79 (0.310)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1825976	0 (0.000)	16 (0.050)	10/262	NT	100%	coding (748/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2075325	NA (NA)					coding (707/1422 nt)	PP_1846	group II intron‑encoding maturase
*	?	NC_002947	1904209 =	166 (0.520)	28 (0.100)	13/242	NT	15.1%	intergenic (+288/‑232)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1904269 =	168 (0.590)					intergenic (+348/‑172)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	= 1904223	172 (0.540)	20 (0.070)	8/242	NT	11.1%	intergenic (+302/‑218)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	= 1904253	168 (0.590)					intergenic (+332/‑188)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	1911673 =	177 (0.560)	26 (0.100)	10/220	NT	17.5%	intergenic (+22/+106)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	1911767 =	102 (0.400)					intergenic (+116/+12)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	1922213 =	326 (1.030)	16 (0.050)	9/250	NT	5.4%	coding (1003/1083 nt)	PP_1718	EAL domain‑containing diguanylate phosphodiesterase
	?	NC_002947	1922292 =	259 (0.890)					coding (924/1083 nt)	PP_1718	EAL domain‑containing diguanylate phosphodiesterase
*	?	NC_002947	1972137 =	38 (0.120)	46 (0.190)	20/206	NT	55.8%	intergenic (+15/+104)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1972233 =	44 (0.180)					intergenic (+111/+8)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	= 1972169	36 (0.110)	13 (0.050)	8/206	NT	26.7%	intergenic (+47/+72)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	= 1972199	44 (0.180)					intergenic (+77/+42)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	= 1973035	316 (0.990)	29 (0.100)	11/246	NT	8.6%	intergenic (‑54/+104)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
	?	NC_002947	= 1973094	333 (1.160)					intergenic (‑113/+45)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
*	?	NC_002947	1975712 =	164 (0.520)	33 (0.120)	19/232	NT	18.5%	intergenic (+14/‑252)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	1975814 =	151 (0.560)					intergenic (+116/‑150)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
*	?	NC_002947	= 1975731	167 (0.530)	35 (0.130)	17/232	NT	19.3%	intergenic (+33/‑233)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	= 1975793	151 (0.560)					intergenic (+95/‑171)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
*	?	NC_002947	2037802 =	NA (NA)	7 (0.020)	3/260	NT	7.0%	coding (291/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	2037827 =	98 (0.310)					coding (316/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
*	?	NC_002947	2053786 =	195 (0.610)	33 (0.120)	18/238	NT	16.8%	intergenic (+33/+106)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	2053877 =	157 (0.560)					intergenic (+124/+15)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	2055551 =	73 (0.230)	14 (0.060)	7/198	NT	21.5%	intergenic (‑52/+123)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	2055661 =	49 (0.210)					intergenic (‑162/+13)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	= 2055587	65 (0.200)	45 (0.190)	19/198	NT	48.3%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2055623	49 (0.210)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	= 2060970	182 (0.570)	23 (0.080)	11/240	NT	13.6%	intergenic (+27/‑116)	aroC/PP_1831	chorismate synthase/membrane protein
	?	NC_002947	= 2061044	131 (0.470)					intergenic (+101/‑42)	aroC/PP_1831	chorismate synthase/membrane protein
*	?	NC_002947	2062792 =	107 (0.340)	26 (0.100)	12/224	NT	21.7%	intergenic (+16/+112)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2062880 =	100 (0.380)					intergenic (+104/+24)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	= 2062815	106 (0.330)	28 (0.110)	8/224	NT	23.0%	intergenic (+39/+89)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	= 2062855	100 (0.380)					intergenic (+79/+49)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	2083224 =	173 (0.540)	10 (0.030)	6/258	NT	6.0%	intergenic (+17/+98)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein
	?	NC_002947	2083321 =	151 (0.500)					intergenic (+114/+1)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein
*	?	NC_002947	= 2090511	138 (0.430)	29 (0.100)	9/256	NT	15.9%	intergenic (+228/‑367)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	= 2092665	178 (0.600)					intergenic (+486/+432)	PP_1865/aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
*	?	NC_002947	2091235 =	NA (NA)	16 (0.050)	9/256	NT	NA	coding (358/1302 nt)	PP_1865	transposase
	?	NC_002947	2091297 =	NA (NA)					coding (420/1302 nt)	PP_1865	transposase
*	?	NC_002947	2104952 =	70 (0.220)	47 (0.180)	21/226	NT	40.8%	intergenic (‑71/‑134)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2105047 =	78 (0.300)					intergenic (‑166/‑39)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	= 2104974	66 (0.210)	25 (0.090)	12/226	NT	27.3%	intergenic (‑93/‑112)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2105023	78 (0.300)					intergenic (‑142/‑63)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	2241911 =	119 (0.370)	23 (0.080)	13/240	NT	17.3%	intergenic (+14/+114)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
	?	NC_002947	2242002 =	115 (0.410)					intergenic (+105/+23)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
*	?	NC_002947	= 2241926	119 (0.370)	31 (0.110)	15/240	NT	22.0%	intergenic (+29/+99)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
	?	NC_002947	= 2241985	115 (0.410)					intergenic (+88/+40)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
*	?	NC_002947	2261161 =	228 (0.720)	19 (0.060)	4/270	NT	8.1%	intergenic (+229/‑475)	asd/PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
	?	NC_002947	2261257 =	206 (0.650)					intergenic (+325/‑379)	asd/PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
*	?	NC_002947	2300767 =	237 (0.750)	28 (0.110)	9/224	NT	15.4%	intergenic (+21/+112)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	2300852 =	113 (0.430)					intergenic (+106/+27)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
*	?	NC_002947	2362811 =	349 (1.100)	18 (0.060)	12/260	NT	5.2%	coding (492/825 nt)	PP_2072	AraC family transcriptional regulator
	?	NC_002947	2362848 =	320 (1.050)					coding (455/825 nt)	PP_2072	AraC family transcriptional regulator
*	?	NC_002947	2419814 =	299 (0.940)	15 (0.050)	11/256	NT	5.4%	coding (20/198 nt)	PP_2115	hypothetical protein
	?	NC_002947	= 4027356	242 (0.810)					intergenic (‑58/+610)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
*	?	NC_002947	2477094 =	62 (0.200)	12 (0.050)	7/194	NT	18.9%	intergenic (+6/+143)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2477218 =	59 (0.260)					intergenic (+130/+19)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
*	?	NC_002947	= 2477132	60 (0.190)	15 (0.070)	6/194	NT	22.8%	intergenic (+44/+105)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	= 2477178	59 (0.260)					intergenic (+90/+59)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
*	?	NC_002947	= 2534258	NA (NA)	9 (0.030)	5/264	NT	100%	intergenic (+393/‑14)	PP_2217/PP_2218	enoyl‑CoA hydratase/transposase
	?	NC_002947	= 2874427	0 (0.000)					coding (44/1302 nt)	PP_2522	transposase
*	?	NC_002947	= 2535772	NA (NA)	21 (0.070)	6/256	NT	8.0%	coding (19/369 nt)	PP_2219	hypothetical protein
	?	NC_002947	4027357 =	256 (0.810)					intergenic (‑59/+609)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
*	?	NC_002947	= 2559172	15 (0.050)	307 (0.970)	144/272	NT	95.3%	coding (161/1881 nt)	PP_2240	ABC transporter permease/ATP‑binding protein
	?	NC_002947	4541196 =	NA (NA)					intergenic (+730/‑85)	PP_4022/PP_4024	hypothetical protein/transposase
*	?	NC_002947	2669000 =	131 (0.410)	20 (0.080)	7/224	NT	17.6%	intergenic (+33/‑130)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
	?	NC_002947	2669081 =	80 (0.310)					intergenic (+114/‑49)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
*	?	NC_002947	= 2799914	226 (0.710)	25 (0.090)	17/246	NT	9.6%	intergenic (+30/+82)	PP_2447/puuB	hypothetical protein/gamma‑glutamylputrescine oxidase
	?	NC_002947	= 2799965	266 (0.930)					intergenic (+81/+31)	PP_2447/puuB	hypothetical protein/gamma‑glutamylputrescine oxidase
*	?	NC_002947	2837665 =	283 (0.890)	34 (0.110)	23/258	NT	11.5%	intergenic (‑21/+46)	PP_2485/PP_2486	hypothetical protein/Oye family NADH‑dependent flavin oxidoreductase
	?	NC_002947	2837713 =	255 (0.850)					coding (1123/1125 nt)	PP_2486	Oye family NADH‑dependent flavin oxidoreductase
*	?	NC_002947	2962064 =	230 (0.720)	32 (0.110)	20/242	NT	14.8%	intergenic (+27/‑169)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
	?	NC_002947	2962151 =	163 (0.580)					intergenic (+114/‑82)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
*	?	NC_002947	3324113 =	261 (0.820)	13 (0.040)	7/250	NT	5.8%	intergenic (‑85/+107)	treSA/PP_2919	trehalose synthase A/LysR family transcriptional regulator
	?	NC_002947	3324198 =	183 (0.630)					intergenic (‑170/+22)	treSA/PP_2919	trehalose synthase A/LysR family transcriptional regulator
*	?	NC_002947	3344109 =	155 (0.490)	16 (0.060)	11/228	NT	10.6%	intergenic (‑119/+124)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
	?	NC_002947	3344197 =	140 (0.530)					intergenic (‑207/+36)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
*	?	NC_002947	= 3344130	151 (0.480)	11 (0.040)	8/228	NT	7.6%	intergenic (‑140/+103)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
	?	NC_002947	= 3344174	140 (0.530)					intergenic (‑184/+59)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
*	?	NC_002947	3527694 =	230 (0.720)	26 (0.110) +36 bp	8/200	NT	12.2%	intergenic (+489/‑208)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	= 4500696	279 (0.880)					coding (13/960 nt)	PP_3987	site‑specific recombinase
*	?	NC_002947	= 3528414	NA (NA)	16 (0.050)	11/260	NT	NA	coding (135/1533 nt)	PP_3114	transposase
	?	NC_002947	= 3528442	NA (NA)					coding (163/1533 nt)	PP_3114	transposase
*	?	NC_002947	3593089 =	225 (0.710)	17 (0.060)	10/232	NT	9.9%	intergenic (+18/‑57)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	3593157 =	118 (0.440)					coding (12/1272 nt)	benE‑II	benzoate transport protein
*	?	NC_002947	3952906 =	209 (0.660)	36 (0.140)	13/216	NT	20.9%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3952991 =	107 (0.420)					coding (51/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	= 3956090	94 (0.300)	12 (0.050)	7/216	NT	11.6%	intergenic (‑61/+134)	PP_3486/PP_3487	cytochrome c/hypothetical protein
	?	NC_002947	= 3956150	108 (0.430)					intergenic (‑121/+74)	PP_3486/PP_3487	cytochrome c/hypothetical protein
*	?	NC_002947	3974576 =	NA (NA)	8 (0.030)	6/270	NT	NA	coding (218/321 nt)	PP_3499	transposase
	?	NC_002947	3974618 =	NA (NA)					coding (260/321 nt)	PP_3499	transposase
*	?	NC_002947	4084407 =	206 (0.650)	10 (0.040)	8/224	NT	6.0%	intergenic (‑218/+166)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
	?	NC_002947	4084524 =	144 (0.550)					intergenic (‑335/+49)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
*	?	NC_002947	= 4099642	257 (0.810)	31 (0.110)	16/248	NT	11.0%	intergenic (+65/+70)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
	?	NC_002947	= 4099687	268 (0.930)					intergenic (+110/+25)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
*	?	NC_002947	= 4136103	314 (0.990)	35 (0.120)	10/252	NT	10.3%	intergenic (+22/+90)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
	?	NC_002947	= 4136165	319 (1.080)					intergenic (+84/+28)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
*	?	NC_002947	4164076 =	101 (0.320)	40 (0.140)	20/240	NT	29.5%	intergenic (+31/‑178)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	4164136 =	102 (0.360)					intergenic (+91/‑118)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	= 4164091	107 (0.340)	26 (0.090)	8/240	NT	20.9%	intergenic (+46/‑163)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	= 4164119	102 (0.360)					intergenic (+74/‑135)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	= 4271522	239 (0.750)	16 (0.050)	12/258	NT	6.4%	intergenic (‑71/+75)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	= 4271595	238 (0.790)					intergenic (‑144/+2)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
*	?	NC_002947	4353217 =	NA (NA)	6 (0.020)	4/264	NT	NA	coding (412/1422 nt)	PP_3820	group II intron‑encoding maturase
	?	NC_002947	4397639 =	NA (NA)					coding (369/1422 nt)	PP_3868	group II intron‑encoding maturase
*	?	NC_002947	4538561 =	209 (0.660)	12 (0.040)	9/248	NT	6.7%	intergenic (+10/‑164)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
	?	NC_002947	4538650 =	144 (0.500)					intergenic (+99/‑75)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
*	?	NC_002947	= 4588487	143 (0.450)	16 (0.060)	14/232	NT	11.9%	intergenic (‑67/+104)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4588548	115 (0.420)					intergenic (‑128/+43)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
*	?	NC_002947	4591012 =	147 (0.460)	35 (0.150)	19/196	NT	35.9%	intergenic (+102/+115)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4591116 =	19 (0.080)					intergenic (+206/+11)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4652552 =	35 (0.110)	51 (0.230)	17/194	NT	52.9%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4652660 =	66 (0.290)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	= 4652590	32 (0.100)	22 (0.100)	12/194	NT	33.1%	intergenic (+48/+83)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	= 4652620	66 (0.290)					intergenic (+78/+53)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	4778298 =	326 (1.030)	18 (0.060)	10/262	NT	5.5%	coding (5963/10413 nt)	pvdD	non‑ribosomal peptide synthetase
	?	NC_002947	4778343 =	310 (1.010)					coding (5918/10413 nt)	pvdD	non‑ribosomal peptide synthetase
*	?	NC_002947	4813168 =	0 (0.000)	124 (0.530)	50/202	NT	61.1%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5993940	158 (0.670)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4813173	0 (0.000)	147 (0.510)	54/248	NT	56.8%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5993770 =	224 (0.770)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4857447	52 (0.160)	10 (0.050)	8/190	NT	13.7%	intergenic (‑124/+173)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
	?	NC_002947	= 4857506	90 (0.410)					intergenic (‑183/+114)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
*	?	NC_002947	4861090 =	200 (0.630)	14 (0.050)	7/244	NT	6.1%	intergenic (+68/+128)	PP_4270/PP_5670	hypothetical protein/hypothetical protein
	?	NC_002947	4861177 =	252 (0.880)					intergenic (+155/+41)	PP_4270/PP_5670	hypothetical protein/hypothetical protein
*	?	NC_002947	4865621 =	312 (0.980)	16 (0.050)	7/262	NT	5.0%	coding (423/2331 nt)	ligA	DNA ligase
	?	NC_002947	4865665 =	305 (1.000)					coding (379/2331 nt)	ligA	DNA ligase
*	?	NC_002947	4894563 =	137 (0.430)	17 (0.070)	11/218	NT	14.1%	intergenic (+15/‑138)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	4894654 =	98 (0.380)					intergenic (+106/‑47)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
*	?	NC_002947	= 4898573	162 (0.510)	21 (0.080)	9/218	NT	12.7%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4898598	160 (0.630)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	4901372 =	100 (0.310)	40 (0.150)	20/230	NT	29.5%	intergenic (+11/‑197)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	4901461 =	107 (0.400)					intergenic (+100/‑108)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4901392	88 (0.280)	29 (0.110)	14/230	NT	24.2%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4901439	107 (0.400)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	4962552 =	274 (0.860)	21 (0.070)	15/242	NT	7.3%	intergenic (‑41/+122)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein
	?	NC_002947	4962642 =	287 (1.020)					intergenic (‑131/+32)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein
*	?	NC_002947	5117556 =	174 (0.550)	17 (0.060)	10/228	NT	10.1%	intergenic (‑148/+118)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
	?	NC_002947	5117661 =	157 (0.590)					intergenic (‑253/+13)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
*	?	NC_002947	= 5117577	168 (0.530)	9 (0.030)	6/228	NT	5.7%	intergenic (‑169/+97)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
	?	NC_002947	= 5117638	157 (0.590)					intergenic (‑230/+36)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
*	?	NC_002947	5130084 =	88 (0.280)	34 (0.130)	9/220	NT	31.7%	intergenic (+61/‑121)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5130163 =	75 (0.290)					intergenic (+140/‑42)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	= 5130109	88 (0.280)	16 (0.060)	9/220	NT	18.0%	intergenic (+86/‑96)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	= 5130136	75 (0.290)					intergenic (+113/‑69)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	5167567 =	84 (0.260)	46 (0.180)	25/220	NT	39.3%	intergenic (+93/+108)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5167651 =	74 (0.290)					intergenic (+177/+24)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	5201380 =	304 (0.960)	17 (0.060)	6/252	NT	6.0%	coding (132/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	5201425 =	254 (0.860)					coding (87/690 nt)	ybgJ	allophanate hydrolase subunit 1
*	?	NC_002947	5206576 =	24 (0.080)	44 (0.190)	18/198	NT	68.5%	intergenic (‑65/‑115)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	5206671 =	23 (0.100)					intergenic (‑160/‑20)	PP_4582/PP_4583	membrane protein/putative Peptidase
*	?	NC_002947	= 5206612	22 (0.070)	32 (0.140)	15/198	NT	62.1%	intergenic (‑101/‑79)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	= 5206633	23 (0.100)					intergenic (‑122/‑58)	PP_4582/PP_4583	membrane protein/putative Peptidase
*	?	NC_002947	5215216 =	158 (0.500)	27 (0.100)	13/240	NT	14.9%	intergenic (‑85/+93)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
	?	NC_002947	5215307 =	168 (0.600)					intergenic (‑176/+2)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
*	?	NC_002947	= 5215231	157 (0.490)	17 (0.060)	12/240	NT	10.0%	intergenic (‑100/+78)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
	?	NC_002947	= 5215290	168 (0.600)					intergenic (‑159/+19)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
*	?	NC_002947	5243650 =	207 (0.650)	17 (0.060)	15/254	NT	7.2%	coding (165/204 nt)	PP_5701	hypothetical protein
	?	NC_002947	5243733 =	247 (0.830)					intergenic (+44/‑237)	PP_5701/PP_4616	hypothetical protein/hypothetical protein
*	?	NC_002947	= 5243674	221 (0.700)	18 (0.060)	10/242	NT	7.6%	coding (189/204 nt)	PP_5701	hypothetical protein
	?	NC_002947	= 5243707	241 (0.850)					intergenic (+18/‑263)	PP_5701/PP_4616	hypothetical protein/hypothetical protein
*	?	NC_002947	5293391 =	95 (0.300)	14 (0.060)	9/212	NT	15.1%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5293485 =	83 (0.340)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	= 5293420	87 (0.270)	23 (0.090)	11/212	NT	23.4%	intergenic (‑104/+80)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	= 5293454	83 (0.340)					intergenic (‑138/+46)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	5338181 =	157 (0.490)	27 (0.090)	12/254	NT	14.3%	intergenic (+16/‑227)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
	?	NC_002947	5338263 =	178 (0.600)					intergenic (+98/‑145)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
*	?	NC_002947	= 5338206	162 (0.510)	23 (0.080)	12/242	NT	12.6%	intergenic (+41/‑202)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
	?	NC_002947	= 5338236	174 (0.620)					intergenic (+71/‑172)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
*	?	NC_002947	5387395 =	46 (0.140)	23 (0.100)	12/202	NT	39.3%	intergenic (+18/+115)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	5387493 =	37 (0.160)					intergenic (+116/+17)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
*	?	NC_002947	= 5387429	35 (0.110)	22 (0.090)	12/202	NT	41.1%	intergenic (+52/+81)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	= 5387457	37 (0.160)					intergenic (+80/+53)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
*	?	NC_002947	= 5482127	51 (0.160)	42 (0.190)	17/190	NT	47.8%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5482144	56 (0.250)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
*	?	NC_002947	5518239 =	158 (0.500)	12 (0.050)	9/220	NT	8.0%	intergenic (+20/‑134)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	5518347 =	150 (0.580)					intergenic (+128/‑26)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	= 5518264	153 (0.480)	32 (0.120)	13/220	NT	18.9%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5518320	150 (0.580)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	5576407 =	172 (0.540)	12 (0.040)	5/244	NT	6.9%	intergenic (+29/+112)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
	?	NC_002947	5576492 =	172 (0.600)					intergenic (+114/+27)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
*	?	NC_002947	= 5576420	172 (0.540)	17 (0.060)	12/244	NT	9.4%	intergenic (+42/+99)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
	?	NC_002947	= 5576477	172 (0.600)					intergenic (+99/+42)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
*	?	NC_002947	5599092 =	100 (0.310)	27 (0.110)	15/216	NT	24.7%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5599185 =	85 (0.340)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5599119	93 (0.290)	28 (0.110)	9/216	NT	26.1%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5599156	85 (0.340)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	5676615 =	123 (0.390)	13 (0.050)	8/224	NT	11.2%	intergenic (+34/‑136)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	5676700 =	104 (0.400)					intergenic (+119/‑51)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
*	?	NC_002947	= 5676638	88 (0.280)	12 (0.050)	8/224	NT	12.0%	intergenic (+57/‑113)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	= 5676675	104 (0.400)					intergenic (+94/‑76)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
*	?	NC_002947	= 5703748	110 (0.350)	18 (0.060)	14/238	NT	14.7%	intergenic (+33/‑134)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	= 5703797	112 (0.400)					intergenic (+82/‑85)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
*	?	NC_002947	= 5739046	181 (0.570)	37 (0.130)	16/248	NT	16.9%	intergenic (‑67/+90)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
	?	NC_002947	= 5739101	199 (0.690)					intergenic (‑122/+35)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
*	?	NC_002947	5748327 =	212 (0.670)	41 (0.140)	19/254	NT	17.0%	intergenic (‑155/+92)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
	?	NC_002947	5748409 =	202 (0.680)					intergenic (‑237/+10)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
*	?	NC_002947	5764409 =	47 (0.150)	24 (0.100)	9/208	NT	42.9%	intergenic (+13/+143)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	5764501 =	28 (0.120)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	= 5764440	44 (0.140)	40 (0.160)	14/208	NT	56.5%	intergenic (+44/+112)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5764468	28 (0.120)					intergenic (+72/+84)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	5791477 =	129 (0.410)	14 (0.050)	8/224	NT	11.8%	intergenic (+15/‑116)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	5791562 =	103 (0.390)					intergenic (+100/‑31)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	= 5791500	122 (0.380)	14 (0.050)	8/224	NT	12.1%	intergenic (+38/‑93)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	= 5791537	103 (0.390)					intergenic (+75/‑56)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	= 5821876	130 (0.410)	28 (0.100)	11/236	NT	19.4%	intergenic (+57/+72)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5821903	120 (0.440)					intergenic (+84/+45)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	= 5863869	134 (0.420)	14 (0.060)	10/212	NT	11.4%	intergenic (+42/+96)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	= 5863914	113 (0.460)					intergenic (+87/+51)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
*	?	NC_002947	5875266 =	115 (0.360)	15 (0.060)	12/214	NT	16.0%	intergenic (+22/+112)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	5875359 =	67 (0.270)					intergenic (+115/+19)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	= 5875294	117 (0.370)	20 (0.080)	11/214	NT	20.1%	intergenic (+50/+84)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	= 5875329	67 (0.270)					intergenic (+85/+49)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	5879553 =	230 (0.720)	15 (0.050)	7/250	NT	6.5%	intergenic (‑40/+108)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	5879635 =	217 (0.740)					intergenic (‑122/+26)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
*	?	NC_002947	= 5879563	233 (0.730)	15 (0.050)	11/250	NT	6.5%	intergenic (‑50/+98)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	= 5879623	217 (0.740)					intergenic (‑110/+38)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
*	?	NC_002947	5881989 =	246 (0.770)	13 (0.050)	10/224	NT	7.3%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5882071 =	129 (0.490)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	5908776 =	215 (0.680)	42 (0.150)	15/240	NT	20.7%	intergenic (+27/+80)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	5908836 =	133 (0.470)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	5919162 =	78 (0.250)	25 (0.100)	15/216	NT	27.5%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5919258 =	70 (0.280)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5919189	68 (0.210)	25 (0.100)	13/216	NT	28.7%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5919229	70 (0.280)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5923347	265 (0.830)	17 (0.060)	9/238	NT	6.5%	intergenic (+32/+63)	ygiF/PP_5188	thiamine triphosphatase/AsnC/Lrp family transcriptional regulator
	?	NC_002947	= 5923387	256 (0.920)					intergenic (+72/+23)	ygiF/PP_5188	thiamine triphosphatase/AsnC/Lrp family transcriptional regulator
*	?	NC_002947	= 5932962	149 (0.470)	11 (0.040)	4/226	NT	7.5%	intergenic (‑63/+90)	PP_5195/fbpA	iron ABC transporter permease/iron ABC transporter substrate‑binding protein
	?	NC_002947	= 5932990	147 (0.560)					intergenic (‑91/+62)	PP_5195/fbpA	iron ABC transporter permease/iron ABC transporter substrate‑binding protein
*	?	NC_002947	= 5948627	149 (0.470)	12 (0.050)	5/228	NT	7.9%	intergenic (+30/+55)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
	?	NC_002947	= 5948648	156 (0.590)					intergenic (+51/+34)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
*	?	NC_002947	5952092 =	271 (0.850)	15 (0.050)	12/250	NT	5.8%	intergenic (‑79/+127)	ubiD/rho	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho
	?	NC_002947	5952197 =	239 (0.820)					intergenic (‑184/+22)	ubiD/rho	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho
*	?	NC_002947	6005908 =	72 (0.230)	25 (0.100)	11/212	NT	28.9%	intergenic (+10/+99)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6006002 =	67 (0.270)					intergenic (+104/+5)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
*	?	NC_002947	= 6005937	70 (0.220)	11 (0.040)	9/212	NT	15.3%	intergenic (+39/+70)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	= 6005971	67 (0.270)					intergenic (+73/+36)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
*	?	NC_002947	= 6024275	168 (0.530)	12 (0.050)	11/226	NT	7.0%	intergenic (‑71/+74)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6024305	177 (0.670)					intergenic (‑101/+44)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
*	?	NC_002947	6065436 =	171 (0.540)	34 (0.120)	12/244	NT	18.5%	intergenic (+67/+114)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6065523 =	146 (0.510)					intergenic (+154/+27)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	= 6082849	149 (0.470)	30 (0.110)	13/224	NT	18.1%	intergenic (‑146/+92)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
	?	NC_002947	= 6082901	148 (0.570)					intergenic (‑198/+40)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter