mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 4,850 | T→G | 25.0% | F373V (TTC→GTC) | thrC → | threonine synthase |
| RA | 57,363 | T→C | 9.1% | intergenic (‑254/‑1) | imp ← / → djlA | exported protein required for envelope biosynthesis and integrity/DnaJ‑like protein, membrane anchored |
| RA | 58,390 | C→T | 10.5% | intergenic (+211/‑84) | djlA → / → yabP | DnaJ‑like protein, membrane anchored/hypothetical protein |
| RA | 70,434 | C→T | 93.1% | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,581 | C→T | 92.5% | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,740 | T→G | 94.1% | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,079 | C→T | 89.1% | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,082 | T→C | 88.8% | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,085 | T→C | 88.2% | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,109 | T→C | 91.0% | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,175 | A→G | 91.8% | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,214 | T→C | 93.2% | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 72,433 | A→G | 8.6% | R165R (CGT→CGC) | thiQ ← | thiamin transporter subunit |
| RA | 86,762 | T→C | 10.0% | I378T (ATC→ACC) | ilvI → | acetolactate synthase III, large subunit |
| RA | 123,736 | A→G | 11.4% | K240K (AAA→AAG) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamin‑binding |
| RA | 131,249 | A→G | 24.4% | T4T (ACT→ACC) | yacH ← | hypothetical protein |
| RA | 155,463 | A→T | 100% | *247K (TAA→AAA) | ecpD ← | predicted periplasmic pilin chaperone |
| RA | 192,898 | T→C | 25.9% | A9A (GCT→GCC) | frr → | ribosome recycling factor |
| RA | 195,303 | A→G | 13.5% | N134S (AAT→AGT) | ispU → | undecaprenyl pyrophosphate synthase |
| RA | 196,892 | A→G | 22.2% | Y116C (TAC→TGC) | yaeL → | zinc metallopeptidase |
| RA | 199,072 | T→C | 29.0% | V382A (GTC→GCC) | yaeT → | conserved hypothetical protein |
| RA | 215,801 | A→G | 16.0% | E178G (GAG→GGG) | nlpE → | lipoprotein involved with copper homeostasis and adhesion |
| RA | 236,101 | A→C | 93.7% | D12A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 236,107 | A→C | 93.7% | E14A (GAA→GCA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 237,726 | A→G | 8.2% | N131S (AAC→AGC) | yafT → | predicted aminopeptidase |
| RA | 250,268 | C→T | 24.2% | pseudogene (197/756 nt) | mbhA → | ECK0231:JW5812:b0230; flagellar system protein, promoterless fragment |
| RA | 286,496 | T→C | 15.1% | F162L (TTT→CTT) | yagH → | predicted xylosidase/arabinosidase |
| RA | 301,283 | A→C | 10.9% | V172G (GTG→GGG) | yagT ← | predicted xanthine dehydrogenase, 2Fe‑2S subunit |
| RA | 302,171 | A→G | 19.4% | intergenic (‑374/‑44) | yagT ← / → yagU | predicted xanthine dehydrogenase, 2Fe‑2S subunit/conserved inner membrane protein |
| RA | 306,593 | T→C | 26.2% | N655S (AAC→AGC) | yagX ← | predicted aromatic compound dioxygenase |
| RA | 338,000 | A→G | 12.0% | H151R (CAC→CGC) | yahG → | conserved hypothetical protein |
| RA | 338,985 | G→A | 19.6% | intergenic (+18/‑32) | yahG → / → yahH | conserved hypothetical protein/hypothetical protein |
| RA | 342,943 | T→C | 19.4% | V279A (GTT→GCT) | yahK → | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding |
| RA | 352,300 | C→T | 27.6% | T124I (ACT→ATT) | prpE → | predicted propionyl‑CoA synthetase with ATPase domain |
| RA | 370,876 | C→T | 23.1% | G143G (GGC→GGT) | mhpC → | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase |
| RA | 373,280 | A→G | 32.4% | A63A (GCA→GCG) | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 389,198 | T→C | 11.9% | M48V (ATG→GTG) | ykiB ← | hypothetical protein |
| RA | 405,632 | A→G | 9.6% | T2A (ACA→GCA) | aroL → | shikimate kinase II |
| RA | 415,058 | T→C | 9.8% | E373E (GAA→GAG) | sbcD ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 483,191 | T→C | 20.5% | D146G (GAT→GGT) | acrB ← | multidrug efflux system protein |
| RA | 500,029 | G→A | 43.2% | L227L (CTG→CTA) | gsk → | inosine/guanosine kinase |
| RA | 501,525 | A→G | 18.2% | L313P (CTG→CCG) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| RA | 516,807 | C→T | 9.8% | E233K (GAA→AAA) | ybbN ← | predicted thioredoxin domain‑containing protein |
| RA | 517,941 | A→G | 23.8% | S145P (TCA→CCA) | ybbO ← | predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| RA | 542,820 | C→T | 37.8% | A151T (GCC→ACC) | ylbA ← | conserved hypothetical protein |
| RA | 546,484 | G→T | 27.5% | G194V (GGC→GTC) | fdrA → | predicted acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain |
| RA | 547,694 | A→G | 100% | pseudogene (114/261 nt) pseudogene (114/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 547,831:1 | +G | 100% | pseudogene (251/261 nt) pseudogene (251/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 571,256 | A→G | 21.4% | T194A (ACA→GCA) | ybcM → | predicted DNA‑binding transcriptional regulator |
| RA | 579,625 | A→G | 15.4% | intergenic (+316/‑432) | ybcW → / → nohB | hypothetical protein/DNA packaging protein |
| RA | 594,454 | T→C | 29.2% | K71K (AAA→AAG) | cusR ← | DNA‑binding response regulator in two‑component regulatory system with CusS |
| RA | 633,015 | G→T | 31.6% | V69V (GTG→GTT) | ybdL → | methionine aminotransferase, PLP‑dependent |
| RA | 641,942 | C→A | 10.8% | A211E (GCG→GAG) | ybdR → | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding |
| RA | 641,944 | G→A | 10.5% | E212K (GAA→AAA) | ybdR → | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding |
| RA | 642,134 | A→G | 25.4% | E275G (GAA→GGA) | ybdR → | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding |
| MC JC | 654,214 | Δ1,199 bp | 100% | [dcuC]–[dcuC] | [dcuC], insH, [dcuC] | |
| RA | 664,084 | C→T | 16.0% | G101D (GGC→GAC) | dacA ← | D‑alanyl‑D‑alanine carboxypeptidase |
| RA | 682,913 | C→T | 17.1% | V301V (GTG→GTA) | hscC ← | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription |
| RA | 689,605 | A→G | 7.1% | intergenic (‑170/+160) | insH ← / ← lnt | IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase |
| RA | 703,662 | T→C | 8.9% | K124K (AAA→AAG) | nagB ← | glucosamine‑6‑phosphate deaminase |
| RA | 726,253 | A→G | 10.1% | R402R (CGT→CGC) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 732,330 | A→G | 6.5% | N776D (AAC→GAC) | rhsC → | rhsC element core protein RshC |
| RA | 771,768 | C→T | 15.5% | intergenic (+735/‑112) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 772,842 | G→A | 13.9% | G321G (GGG→GGA) | cydA → | cytochrome d terminal oxidase, subunit I |
| RA | 823,380 | G→A | 21.6% | P261L (CCG→CTG) | ybhO ← | cardiolipin synthase 2 |
| RA | 865,658 | A→G | 19.6% | F377L (TTT→CTT) | moeA ← | molybdopterin biosynthesis protein |
| RA | 897,644 | T→G | 8.2% | W47G (TGG→GGG) | potI → | putrescine transporter subunit |
| RA | 923,181 | C→T | 12.5% | intergenic (‑169/‑154) | cspD ← / → clpS | cold shock protein homolog/regulatory protein for ClpA substrate specificity |
| RA | 953,140 | A→C | 21.8% | R279R (CGT→CGG) | pflB ← | pyruvate formate lyase I |
| RA | 980,276 | C→T | 15.4% | P1177S (CCG→TCG) | mukB → | fused chromosome partitioning proteins |
| RA | 1,023,649 | G→A | 16.0% | L219L (CTC→CTT) | yccS ← | predicted inner membrane protein |
| RA | 1,044,904 | T→C | 20.4% | E65E (GAA→GAG) | etp ← | phosphotyrosine‑protein phosphatase |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| RA | 1,122,815 | C→G | 29.6% | intergenic (‑283/+4) | yceP ← / ← dinI | hypothetical protein/DNA damage‑inducible protein I |
| RA | 1,168,260 | G→A | 12.2% | G200D (GGT→GAT) | ndh → | respiratory NADH dehydrogenase 2/cupric reductase |
| RA | 1,171,889 | C→A | 42.8% | A21A (GCG→GCT) | ycfS ← | conserved hypothetical protein |
| RA | 1,224,639 | A→G | 8.9% | intergenic (‑143/‑403) | ymgG ← / → ymgH | hypothetical protein/hypothetical protein |
| RA | 1,280,527 | A→G | 17.6% | S332G (AGC→GGC) | narK → | nitrate/nitrite transporter |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,303,631 | C→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,303,633 | G→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,366,654 | T→C | 25.2% | Y237H (TAT→CAT) | puuB → | gamma‑Glu‑putrescine oxidase, FAD/NAD(P)‑binding |
| RA | 1,367,159 | C→T | 29.6% | T405M (ACG→ATG) | puuB → | gamma‑Glu‑putrescine oxidase, FAD/NAD(P)‑binding |
| RA | 1,389,988 | C→T | 14.3% | intergenic (+13/+31) | tyrR → / ← tpx | DNA‑binding transcriptional dual regulator, tyrosine‑binding/lipid hydroperoxide peroxidase |
| RA | 1,408,005 | T→C | 8.3% | F105L (TTT→CTT) | ydaL → | conserved hypothetical protein |
| RA | 1,413,273 | G→T | 12.7% | R130R (CGC→CGA) | ydaO ← | predicted C32 tRNA thiolase |
| RA | 1,438,971 | C→T | 25.0% | intergenic (‑364/+3) | ompN ← / ← ydbK | outer membrane pore protein N, non‑specific/fused predicted Fe‑S subunit of pyruvate‑flavodoxin oxidoreductase |
| RA | 1,473,932 | G→T | 11.9% | pseudogene (6827/8622 nt) pseudogene (1529/3324 nt) |
ydbA → ydbA → |
ECK1398:JW5802+JW1402:b4492; predicted outer membrane protein ECK1398:JW1402:b1405; predicted outer membrane protein, C‑ter fragment |
| RA | 1,487,609 | C→T | 18.2% | R926R (CGC→CGT) | hrpA → | ATP‑dependent helicase |
| RA | 1,489,179 | T→C | 21.8% | F77F (TTT→TTC) | ydcF → | conserved hypothetical protein |
| RA | 1,526,310 | A→G | 11.5% | V462A (GTT→GCT) | ansP ← | L‑asparagine transporter |
| RA | 1,557,824 | C→T | 7.0% | Q57Q (CAG→CAA) | bdm ← | biofilm‑dependent modulation protein |
| RA | 1,559,087 | T→C | 13.9% | V222V (GTA→GTG) | ddpF ← | D‑Ala‑D‑Ala transporter subunit |
| RA | 1,567,579 | T→C | 15.8% | N313D (AAT→GAT) | yddV ← | predicted diguanylate cyclase |
| RA | 1,594,973 | A→G | 11.1% | pseudogene (807/1401 nt) | ydeU ← | ECK1502:JW1502:b1509; conserved hypothetical protein |
| RA | 1,600,711 | A→G | 13.1% | S405P (TCA→CCA) | ydeV ← | predicted sugar kinase |
| RA | 1,621,163 | A→G | 24.2% | Q110Q (CAA→CAG) | marR → | DNA‑binding transcriptional repressor |
| RA | 1,639,860 | T→C | 18.7% | intergenic (‑37/+309) | ynfN ← / ← cspI | hypothetical protein/cold shock protein |
| RA | 1,649,687 | T→C | 16.8% | Y14H (TAT→CAT) | dicA → | predicted regulator for DicB |
| RA | 1,656,712 | C→A | 15.4% | Q48H (CAG→CAT) | rspA ← | predicted dehydratase |
| RA | 1,693,744 | T→C | 8.9% | E274E (GAA→GAG) | uidC ← | predicted outer membrane porin protein |
| RA | 1,696,825 | T→C | 10.1% | I321V (ATT→GTT) | uidA ← | beta‑D‑glucuronidase |
| RA | 1,698,594 | A→G | 10.9% | L58S (TTG→TCG) | uidR ← | DNA‑binding transcriptional repressor |
| RA | 1,701,562:1 | +C | 14.7% | coding (494/1593 nt) | malX → | fused maltose and glucose‑specific PTS enzyme IIBC components |
| RA | 1,706,087 | T→C | 13.6% | intergenic (‑65/‑178) | ydgJ ← / → blr | predicted oxidoreductase/beta‑lactam resistance membrane protein |
| RA | 1,713,297 | A→G | 15.4% | T21A (ACC→GCC) | nth → | DNA glycosylase and apyrimidinic (AP) lyase |
| RA | 1,779,943 | A→G | 12.3% | E345G (GAG→GGG) | ydiO → | predicted acyl‑CoA dehydrogenase |
| RA | 1,796,665 | C→T | 27.3% | A68T (GCG→ACG) | btuC ← | vitamin B12 transporter subunit |
| RA | 1,800,301 | A→C | 10.5% | F119C (TTC→TGC) | pheS ← | phenylalanine tRNA synthetase, alpha subunit |
| RA | 1,803,912 | G→T | 18.3% | H125N (CAT→AAT) | thrS ← | threonyl‑tRNA synthetase |
| RA | 1,804,377 | A→G | 22.4% | intergenic (‑93/‑431) | thrS ← / → arpB | threonyl‑tRNA synthetase/ECK1718:JW5278:b1720; hypothetical protein, N‑ter fragment |
| RA | 1,806,617 | T→G | 31.1% | pseudogene (1810/1900 nt) pseudogene (1326/1416 nt) |
arpB → arpB → |
ECK1718:JW5278+JW1710:b4494; hypothetical protein ECK1718:JW1710:b1721; hypothetical protein, C‑ter fragment |
| RA | 1,824,257 | T→C | 32.6% | F29S (TTT→TCT) | nadE → | NAD synthetase, NH3/glutamine‑dependent |
| RA | 1,828,990 | G→A | 14.3% | H328H (CAC→CAT) | astB ← | succinylarginine dihydrolase |
| RA | 1,885,888 | A→G | 17.0% | T329T (ACA→ACG) | yeaV → | predicted transporter |
| RA | 1,912,571 | T→C | 10.9% | N194N (AAT→AAC) | yebQ → | predicted transporter |
| RA | 1,940,955 | T→C | 10.5% | D318G (GAT→GGT) | lpxM ← | myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| RA | 2,002,183 | G→A | 23.2% | R114C (CGC→TGC) | fliY ← | cystine transporter subunit |
| RA | 2,081,459 | A→G | 11.3% | F36L (TTT→CTT) | yeeX ← | conserved hypothetical protein |
| RA | 2,117,348 | C→T | 44.4% | G229D (GGC→GAC) | wcaM ← | predicted colanic acid biosynthesis protein |
| RA | 2,141,886 | A→G | 7.8% | intergenic (+264/+10) | yegH → / ← asmA | fused predicted membrane proteins/predicted assembly protein |
| RA | 2,142,256 | G→A | 6.2% | T498T (ACC→ACT) | asmA ← | predicted assembly protein |
| MC JC | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| RA | 2,178,242 | G→A | 13.6% | P48S (CCT→TCT) | gatA ← | galactitol‑specific enzyme IIA component of PTS |
| RA | 2,183,814 | T→A | 9.3% | V129E (GTG→GAG) | yegU → | predicted hydrolase |
| RA | 2,196,545 | G→A | 13.6% | R320C (CGT→TGT) | mrp ← | antiporter inner membrane protein |
| RA | 2,197,153 | C→T | 27.3% | G117D (GGC→GAC) | mrp ← | antiporter inner membrane protein |
| RA | 2,213,335 | A→G | 19.7% | N301S (AAT→AGT) | yehQ → | hypothetical protein |
| RA | 2,291,258 | C→T | 23.4% | G326D (GGC→GAC) | yejO ← | predicted autotransporter outer membrane protein |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| RA | 2,329,422 | A→T | 28.2% | D215V (GAT→GTT) | atoA → | acetyl‑CoA:acetoacetyl‑CoA transferase, beta subunit |
| RA | 2,393,339 | A→G | 8.9% | N30S (AAT→AGT) | yfbO → | hypothetical protein |
| RA | 2,394,072 | A→G | 9.2% | D97G (GAT→GGT) | yfbP → | hypothetical protein |
| RA | 2,400,870 | T→G | 19.0% | D84A (GAC→GCC) | nuoI ← | NADH:ubiquinone oxidoreductase, chain I |
| RA | 2,405,008 | C→T | 22.2% | E406E (GAG→GAA) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 2,405,632 | G→A | 15.9% | R198R (CGC→CGT) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 2,413,837 | T→C | 32.3% | C277C (TGT→TGC) | yfbQ → | predicted aminotransferase |
| RA | 2,449,567 | C→T | 15.8% | V17I (GTT→ATT) | yfcL ← | hypothetical protein |
| RA | 2,472,806 | C→T | 15.0% | D272D (GAC→GAT) | intS → | predicted prophage CPS‑53 integrase |
| RA | 2,485,132 | G→A | 10.9% | S162N (AGC→AAC) | dsdA → | D‑serine ammonia‑lyase |
| RA | 2,508,088 | C→A | 23.5% | G615V (GGC→GTC) | ypdD ← | fused predicted PTS enzymes Hpr component, enzyme I component, and enzyme IIA component |
| RA | 2,516,776 | G→A | 13.8% | intergenic (+3/+138) | ypeC → / ← mntH | conserved hypothetical protein/manganese/divalent cation transporter |
| RA | 2,562,915 | T→C | 10.9% | Y404C (TAC→TGC) | eutB ← | ethanolamine ammonia‑lyase, large subunit, heavy chain |
| RA | 2,611,108 | T→C | 13.0% | F185L (TTC→CTC) | hyfR → | DNA‑binding transcriptional activator, formate sensing |
| RA | 2,629,497 | C→T | 9.4% | N172N (AAC→AAT) | yfgI → | conserved hypothetical protein |
| RA | 2,629,792 | T→C | 27.6% | D467G (GAC→GGC) | guaA ← | GMP synthetase |
| RA | 2,635,048 | T→C | 12.7% | K322R (AAG→AGG) | der ← | predicted GTP‑binding protein |
| RA | 2,637,539 | A→G | 13.6% | V134A (GTT→GCT) | yfgM ← | conserved hypothetical protein |
| RA | 2,655,114 | C→T | 34.6% | intergenic (‑100/+78) | pepB ← / ← yfhJ | aminopeptidase B/conserved hypothetical protein |
| RA | 2,663,570 | Δ1 bp | 22.9% | coding (552/882 nt) | yfhR → | predicted peptidase |
| RA | 2,682,462 | C→G | 5.9% | A315G (GCC→GGC) | yphH → | predicted DNA‑binding transcriptional regulator |
| RA | 2,702,821 | A→G | 29.8% | intergenic (‑102/+170) | rnc ← / ← lepB | RNase III/leader peptidase |
| RA | 2,703,000 | G→T | 16.6% | G322G (GGC→GGA) | lepB ← | leader peptidase |
| RA | 2,703,818 | T→G | 50.0% | T50P (ACG→CCG) | lepB ← | leader peptidase |
| RA | 2,703,821 | C→G | 51.3% | A49P (GCA→CCA) | lepB ← | leader peptidase |
| RA | 2,703,823 | T→A | 52.7% | K48I (AAA→ATA) | lepB ← | leader peptidase |
| RA | 2,720,043 | A→G | 11.5% | T479A (ACG→GCG) | yfiQ → | fused predicted acyl‑CoA synthetase NAD(P)‑binding subunit and ATP‑binding subunit |
| RA | 2,720,297 | G→A | 27.5% | W563* (TGG→TGA) | yfiQ → | fused predicted acyl‑CoA synthetase NAD(P)‑binding subunit and ATP‑binding subunit |
| RA | 2,729,684 | T→C | 32.5% | noncoding (130/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 2,750,169 | C→T | 17.3% | T228M (ACG→ATG) | yfjB → | NAD kinase |
| RA | 2,764,566 | T→A | 8.3% | intergenic (‑134/‑8) | yfjM ← / → yfjN | hypothetical protein/hypothetical protein |
| RA | 2,788,749 | C→T | 23.1% | P38S (CCG→TCG) | ygaF → | hypothetical protein |
| RA | 2,809,581 | G→A | 92.1% | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator |
| RA | 2,813,784 | C→T | 8.8% | A438T (GCC→ACC) | gshA ← | gamma‑glutamate‑cysteine ligase |
| RA | 2,818,985 | A→G | 30.0% | R561R (CGT→CGC) | alaS ← | alanyl‑tRNA synthetase |
| RA | 2,829,103 | T→C | 7.5% | V212A (GTG→GCG) | gutQ → | predicted phosphosugar‑binding protein |
| RA | 2,860,149 | G→T | 10.2% | A22S (GCA→TCA) | ygbJ → | predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain |
| RA | 2,863,108 | T→C | 13.2% | L73L (TTA→CTA) | ygbM → | conserved hypothetical protein |
| RA | 2,865,292 | G→A | 19.6% | Q267* (CAG→TAG) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,110 | T→A | 100% | intergenic (‑20/+160) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein |
| RA | 2,886,205 | A→G | 17.4% | intergenic (‑330/+29) | ygcB ← / ← cysH | conserved hypothetical protein, member of DEAD box family/3'‑phosphoadenosine 5'‑phosphosulfate reductase |
| RA | 2,892,483 | A→G | 17.7% | K391E (AAA→GAA) | ygcN → | predicted oxidoreductase, FAD/NAD(P)‑binding domain |
| RA | 2,894,681:1 | +A | 6.8% | coding (531/780 nt) | ygcR ← | predicted flavoprotein |
| RA | 2,902,330 | A→T | 36.4% | intergenic (+300/+1073) | ygcE → / ← ygcF | predicted kinase/conserved hypothetical protein |
| RA | 2,939,281 | C→T | 19.4% | E207K (GAA→AAA) | ygdE ← | predicted methyltransferase |
| RA | 2,960,805 | T→C | 27.3% | K94E (AAA→GAA) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,966,285 | T→C | 21.2% | E269G (GAG→GGG) | ptsP ← | fused PEP‑protein phosphotransferase (enzyme I) of PTS system |
| RA | 2,983,818 | A→G | 17.3% | V144A (GTG→GCG) | yqeF ← | predicted acyltransferase |
| RA | 2,989,559 | G→A | 7.5% | C117Y (TGC→TAC) | ygeF → | hypothetical protein |
| RA | 2,989,682 | C→T | 16.0% | intergenic (+26/‑242) | ygeF → / → ygeG | hypothetical protein/predicted chaperone |
| RA | 2,989,906 | A→G | 21.1% | intergenic (+250/‑18) | ygeF → / → ygeG | hypothetical protein/predicted chaperone |
| RA | 3,019,020 | A→G | 16.6% | S402G (AGC→GGC) | ssnA → | predicted chlorohydrolase/aminohydrolase |
| RA | 3,031,910 | A→G | 18.2% | N64D (AAC→GAC) | idi → | isopentenyl diphosphate isomerase |
| RA | 3,047,650 | T→C | 30.0% | E16E (GAA→GAG) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
| RA | 3,053,087 | T→A | 15.9% | Y137F (TAT→TTT) | pepP ← | proline aminopeptidase P II |
| RA | 3,062,130 | A→C | 32.7% | E163A (GAA→GCA) | argK → | membrane ATPase/protein kinase |
| RA | 3,093,680 | G→A | 10.2% | H19H (CAC→CAT) | yggR ← | predicted transporter |
| RA | 3,100,981 | A→G | 15.1% | H176H (CAT→CAC) | yggH ← | tRNA (m7G46) methyltransferase, SAM‑dependent |
| RA | 3,104,160 | C→T | 36.6% | R358C (CGC→TGC) | mltC → | membrane‑bound lytic murein transglycosylase C |
| RA | 3,123,192 | A→C | 8.1% | C308W (TGT→TGG) | glcF ← | glycolate oxidase iron‑sulfur subunit |
| RA | 3,128,408 | T→C | 25.7% | D155G (GAC→GGC) | yghO ← | predicted DNA‑binding transcriptional regulator |
| RA | 3,141,409 | C→T | 12.6% | A79A (GCG→GCA) | hybC ← | hydrogenase 2, large subunit |
| RA | 3,163,647 | T→A | 9.4% | N328I (AAC→ATC) | parC ← | DNA topoisomerase IV, subunit A |
| RA | 3,204,990 | T→C | 28.1% | intergenic (‑78/‑129) | ygiP ← / → ttdA | predicted DNA‑binding transcriptional regulator/L‑tartrate dehydratase, alpha subunit |
| RA | 3,211,677 | C→T | 19.0% | intergenic (+169/‑26) | dnaG → / → rpoD | DNA primase/RNA polymerase, sigma 70 (sigma D) factor |
| MC JC | 3,261,134 | Δ1,199 bp | 100% | insH–[tdcD] | insH, [tdcD] | |
| RA | 3,272,348 | C→T | 40.5% | G89S (GGT→AGT) | garR ← | tartronate semialdehyde reductase |
| RA | 3,285,124 | C→T | 8.3% | G195G (GGC→GGT) | agaC → | N‑acetylgalactosamine‑specific enzyme IIC component of PTS |
| RA | 3,328,359 | T→C | 20.8% | N71S (AAC→AGC) | greA ← | transcription elongation factor |
| RA | 3,332,723 | A→G | 22.2% | A84A (GCT→GCC) | rpmA ← | 50S ribosomal subunit protein L27 |
| RA | 3,348,085 | G→A | 38.6% | E89K (GAA→AAA) | npr → | phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr) |
| RA | 3,359,906 | T→C | 28.8% | M285T (ATG→ACG) | gltD → | glutamate synthase, 4Fe‑4S protein, small subunit |
| RA | 3,360,083 | T→C | 27.7% | F344S (TTC→TCC) | gltD → | glutamate synthase, 4Fe‑4S protein, small subunit |
| RA | 3,383,928 | C→T | 18.4% | A66T (GCG→ACG) | mdh ← | malate dehydrogenase, NAD(P)‑binding |
| RA | 3,404,628 | A→C | 12.4% | intergenic (+315/‑663) | yhdH → / → accB | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding/acetyl CoA carboxylase, BCCP subunit |
| RA | 3,404,829 | C→G | 18.4% | intergenic (+516/‑462) | yhdH → / → accB | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding/acetyl CoA carboxylase, BCCP subunit |
| RA | 3,488,502 | C→T | 23.6% | L47L (CTG→TTG) | yijO → | predicted DNA‑binding transcriptional regulator |
| RA | 3,515,054 | A→G | 9.1% | N41D (AAC→GAC) | hslU → | molecular chaperone and ATPase component of HslUV protease |
| RA | 3,519,938 | A→G | 20.9% | E160E (GAA→GAG) | glpK → | glycerol kinase |
| RA | 3,538,437 | G→A | 16.9% | A170V (GCA→GTA) | rhaS ← | DNA‑binding transcriptional activator, L‑rhamnose‑binding |
| RA | 3,560,351 | G→A | 13.8% | P62L (CCC→CTC) | rbn ← | tRNA processing exoribonuclease BN |
| RA | 3,560,998 | A→G | 29.8% | F44S (TTT→TCT) | yihX ← | predicted hydrolase |
| RA | 3,569,811 | G→A | 5.2% | V116I (GTC→ATC) | yihP → | predicted transporter |
| RA | 3,591,039 | G→A | 37.8% | intergenic (+28/+13) | yihG → / ← yihF | predicted endonuclease/conserved hypothetical protein |
| RA | 3,602,757 | T→A | 21.9% | L260F (TTA→TTT) | trkH ← | potassium transporter |
| RA | 3,608,041 | C→T | 20.0% | L45L (CTG→TTG) | fadA → | 3‑ketoacyl‑CoA thiolase |
| RA | 3,633,778 | T→C | 14.1% | C97C (TGT→TGC) | yigG → | predicted inner membrane protein |
| RA | 3,671,661 | G→A | 29.2% | R204Q (CGG→CAG) | rhlB → | ATP‑dependent RNA helicase |
| RA | 3,678,974 | C→A | 17.8% | R38R (CGC→CGA) | ilvY → | DNA‑binding transcriptional dual regulator |
| RA | 3,699,899 | G→A | 21.2% | G169G (GGC→GGT) | rbsB ← | D‑ribose transporter subunit |
| RA | 3,701,075 | T→C | 30.4% | L107L (TTA→TTG) | rbsC ← | D‑ribose transporter subunit |
| RA | 3,712,033 | G→A | 25.4% | M328I (ATG→ATA) | gidA → | glucose‑inhibited cell‑division protein |
| RA | 3,730,340 | C→T | 12.9% | T75T (ACC→ACT) | bglG → | transcriptional antiterminator of the bgl operon |
| RA | 3,740,943 | C→T | 31.2% | R290R (CGC→CGT) | yieG → | predicted inner membrane protein |
| MC JC | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| MC JC | 3,746,913 | Δ1,199 bp | 100% | [tnaB]–[tnaB] | [tnaB], insH, [tnaB] | |
| RA | 3,748,215 | G→A | 20.4% | S256S (AGC→AGT) | tnaB ← | tryptophan transporter of low affinity |
| RA | 3,824,280 | T→C | 100% | pseudogene (413/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,326 | T→C | 100% | pseudogene (459/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,362 | A→T | 100% | pseudogene (495/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,368 | G→A | 100% | pseudogene (501/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,374 | C→T | 100% | pseudogene (507/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,380 | 2 bp→AA | 100% | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,410 | T→A | 100% | pseudogene (543/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,514 | T→C | 100% | pseudogene (647/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,524 | T→G | 100% | pseudogene (657/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,533:1 | +G | 100% | pseudogene (666/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,867,919 | C→T | 13.3% | G73D (GGC→GAC) | mtlA ← | fused mannitol‑specific PTS enzyme IIABC components |
| RA | 3,871,558 | T→C | 12.6% | intergenic (+1384/+221) | yibH → / ← yibG | hypothetical protein/conserved hypothetical protein |
| RA | 3,903,549 | T→C | 6.1% | S104P (TCA→CCA) | bax → | conserved hypothetical protein |
| RA | 3,916,897 | A→G | 10.6% | N293S (AAC→AGC) | glyS → | glycine tRNA synthetase, beta subunit |
| RA | 3,958,682 | C→T | 39.2% | A69V (GCC→GTC) | yhjJ → | predicted zinc‑dependent peptidase |
| RA | 3,960,751 | C→T | 33.3% | R83H (CGT→CAT) | kdgK ← | ketodeoxygluconokinase |
| RA | 3,998,196 | A→G | 10.6% | Y454H (TAT→CAT) | yhiP ← | predicted transporter |
| RA | 4,000,806 | A→T | 10.8% | D37V (GAT→GTT) | yhiO → | predicted universal stress (ethanol tolerance) protein B |
| RA | 4,051,614 | T→C | 25.9% | G126G (GGT→GGC) | ugpC → | glycerol‑3‑phosphate transporter subunit |
| RA | 4,068,392 | T→C | 29.5% | M493T (ATG→ACG) | glgB → | 1,4‑alpha‑glucan branching enzyme |
| RA | 4,085,470 | G→A | 21.0% | R622C (CGT→TGT) | malT ← | DNA‑binding transcriptional activator, maltotriose‑ATP‑binding |
| RA | 4,092,715 | G→A | 16.6% | A382V (GCG→GTG) | gntT ← | gluconate transporter, high‑affinity GNT I system |
| RA | 4,125,813 | C→T | 22.4% | P152L (CCT→CTT) | rpe → | D‑ribulose‑5‑phosphate 3‑epimerase |
| RA | 4,208,832 | A→G | 26.7% | H126R (CAC→CGC) | yrdD → | predicted DNA topoisomerase |
| RA | 4,225,730 | G→A | 18.2% | T117I (ACT→ATT) | arpA ← | regulator of acetyl CoA synthetase |
| RA | 4,229,470 | A→G | 14.3% | Q684R (CAG→CGG) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,243,626 | C→T | 5.5% | intergenic (+304/‑291) | yjbH → / → yjbA | predicted porin/predicted phosphate starvation inducible protein |
| RA | 4,249,681 | A→C | 15.3% | F111V (TTC→GTC) | malE ← | maltose transporter subunit |
| RA | 4,295,216 | G→A | 35.5% | G38D (GGC→GAC) | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| MC JC | 4,310,365 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,325,315 | T→A | 28.0% | K10M (AAG→ATG) | phnI ← | carbon‑phosphorus lyase complex subunit |
| RA | 4,326,669 | A→G | 25.0% | L145S (TTA→TCA) | phnF ← | transcriptional regulator of phosphonate uptake and biodegradation |
| RA | 4,338,560 | Δ1 bp | 17.9% | coding (71/669 nt) | basR ← | DNA‑binding response regulator in two‑component regulatory system with BasS |
| RA | 4,354,061 | C→T | 7.5% | G218G (GGG→GGA) | dcuR ← | DNA‑binding response regulator in two‑component regulatory system with DcuS |
| RA | 4,361,585 | C→T | 35.8% | P571P (CCG→CCA) | cadA ← | lysine decarboxylase 1 |
| RA | 4,362,267 | T→G | 26.2% | E344A (GAA→GCA) | cadA ← | lysine decarboxylase 1 |
| RA | 4,371,273 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,405,345 | G→A | 22.6% | intergenic (+67/‑9) | hfq → / → hflX | HF‑I, host factor for RNA phage Q beta replication/predicted GTPase |
| RA | 4,411,479 | C→T | 12.7% | G48G (GGC→GGT) | rnr → | exoribonuclease R, RNase R |
| RA | 4,440,755 | T→C | 7.1% | K165E (AAA→GAA) | cpdB ← | 2':3'‑cyclic‑nucleotide 2'‑phosphodiesterase |
| RA | 4,464,055 | A→T | 22.4% | intergenic (+62/‑180) | pmbA → / → cybC | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17/ECK4231:JW4195:b4236; cytochrome b562, truncated |
| RA | 4,482,473 | A→G | 8.5% | L174P (CTC→CCC) | argI ← | ornithine carbamoyltransferase 1 |
| RA | 4,525,729 | A→G | 6.7% | V325A (GTT→GCT) | yjhF ← | predicted transporter |
| RA | 4,526,495 | T→C | 12.9% | M70V (ATG→GTG) | yjhF ← | predicted transporter |
| RA | 4,527,342 | C→T | 8.9% | E479K (GAG→AAG) | yjhG ← | predicted dehydratase |
| RA | 4,546,724 | T→C | 30.7% | S2S (AGT→AGC) | fimE → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,563,589 | T→A | 100% | K207M (AAG→ATG) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,581,599 | T→C | 10.9% | K348E (AAA→GAA) | mcrC ← | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| RA | 4,616,051 | T→C | 12.9% | intergenic (+366/‑27) | prfC → / → osmY | peptide chain release factor RF‑3/periplasmic protein |
| RA | 4,623,057 | C→T | 15.5% | H49H (CAC→CAT) | deoA → | thymidine phosphorylase |
| RA | 4,635,047 | G→A | 25.0% | A53V (GCG→GTG) | yjjK ← | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| RA | 4,641,490:1 | +G | 23.7% | coding (113/1425 nt) | creC → | sensory histidine kinase in two‑component regulatory system with CreB or PhoB, regulator of the CreBC regulon |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 284194 | 284262 | 69 | 13 [9] | [9] 10 | yagF | predicted dehydratase |
| * | * | ÷ | W3110S.gb | 422764 | 422798 | 35 | 11 [7] | [9] 10 | malZ | maltodextrin glucosidase |
| * | * | ÷ | W3110S.gb | 573858–575013 | 575999 | 987–2142 | 11 [9] | [0] 115 | insH–[nmpC] | insH,[nmpC] |
| * | * | ÷ | W3110S.gb | 1328290 | 1328344 | 55 | 10 [9] | [8] 10 | yciQ | predicted inner membrane protein |
| * | * | ÷ | W3110S.gb | 2569112 | 2569138 | 27 | 10 [7] | [8] 10 | eutE | predicted aldehyde dehydrogenase, ethanolamine utilization protein |
| * | * | ÷ | W3110S.gb | 4213624–4215889 | 4216719–4215891 | 3–3096 | 10 [9] | [8] 11 | rrlE–[rrfE] | rrlE,[rrfE] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 38 (0.830) | 487 (13.750) +CGCGTACAACT |
83/74 | NT | 92.5% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 65 (1.410) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
| * | ? | W3110S.gb | = 71265 | 50 (1.090) | 264 (8.110) +AGGGTCCCTAAGTC |
71/68 | NT | 91.8% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 17 (0.370) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
| * | ? | W3110S.gb | = 154878 | 46 (1.000) | 8 (0.230) +GTTTTGGTTTC |
4/74 | NT | 19.8% | coding (549/2598 nt) | htrE | predicted outer membrane usher protein |
| ? | W3110S.gb | 3275776 = | 38 (0.830) | coding (640/1572 nt) | garD | (D)‑galactarate dehydrogenase | |||||
| * | ? | W3110S.gb | 205097 = | 57 (1.240) | 62 (1.620) +TTATAACA |
18/80 | NT | 65.6% | intergenic (+8/‑29) | rnhB/dnaE | ribonuclease HII, degrades RNA of DNA‑RNA hybrids/DNA polymerase III alpha subunit |
| ? | W3110S.gb | = 467579 | 21 (0.460) | intergenic (+125/‑28) | cof/ybaO | thiamin pyrimidine pyrophosphate hydrolase/predicted DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | = 236798 | 29 (0.630) | 214 (10.650) +27 bp |
47/42 | NT | 94.3% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 30 (0.650) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 46 (1.000) | 26/96 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 48 (1.040) | 31/96 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 51 (1.110) | 31/96 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | = 606711 | 47 (1.020) | 5 (0.130) +CCCGGGTTG |
3/78 | NT | 11.6% | intergenic (‑105/‑348) | ybdK/hokE | gamma‑glutamyl:cysteine ligase/toxic polypeptide, small |
| ? | W3110S.gb | 3793220 = | 47 (1.020) | intergenic (+108/‑30) | uhpC/uhpT | membrane protein regulates uhpT expression/hexose phosphate transporter | |||||
| * | ? | W3110S.gb | = 641963 | 40 (0.870) | 15 (0.360) +AGAA |
4/88 | NT | 29.6% | coding (653/1239 nt) | ybdR | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding |
| ? | W3110S.gb | = 4186745 | 38 (0.830) | coding (255/420 nt) | pioO | part of gsp divergon involved in type II protein secretion | |||||
| * | ? | W3110S.gb | 713380 = | 38 (0.830) | 492 (11.680) | 94/88 | NT | 92.8% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 42 (1.000) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | W3110S.gb | = 713954 | 35 (0.760) | 689 (15.000) | 100/96 | NT | 93.8% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 56 (1.220) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | = 779866 | 56 (1.220) | 13 (0.370) +TGCTTCTGGGG |
5/74 | NT | 22.8% | coding (378/522 nt) | pal | peptidoglycan‑associated outer membrane lipoprotein |
| ? | W3110S.gb | = 4285736 | 58 (1.260) | coding (932/1293 nt) | yjcF | conserved hypothetical protein | |||||
| * | ? | W3110S.gb | 1116875 = | 47 (1.020) | 34 (0.930) +CATCTGTACT |
4/76 | NT | 45.2% | coding (193/1227 nt) | mdtG | predicted drug efflux system |
| ? | W3110S.gb | 1806604 = | 57 (1.240) | pseudogene (1797/1900 nt) pseudogene (1313/1416 nt) |
arpB arpB |
ECK1718:JW5278+JW1710:b4494; hypothetical protein ECK1718:JW1710:b1721; hypothetical protein, C‑ter fragment |
|||||
| * | ? | W3110S.gb | 1122802 = | 14 (0.300) | 8 (0.200) +CTCCATT |
3/82 | NT | 27.7% | intergenic (‑270/+17) | yceP/dinI | hypothetical protein/DNA damage‑inducible protein I |
| ? | W3110S.gb | = 1678185 | 35 (0.760) | coding (1433/1533 nt) | pntA | pyridine nucleotide transhydrogenase, alpha subunit | |||||
| * | ? | W3110S.gb | 1209367 = | 21 (0.460) | 15 (0.490) | 11/64 | NT | 55.6% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 10 (0.330) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | = 1209382 | 22 (0.480) | 13 (0.420) | 11/64 | NT | 51.3% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 10 (0.330) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | 1499899 = | 41 (0.890) | 26 (0.780) +CTTGTTACACCGT |
6/70 | NT | 42.6% | coding (1300/1626 nt) | mdoD | glucan biosynthesis protein, periplasmic |
| ? | W3110S.gb | 3737712 = | 55 (1.200) | coding (423/723 nt) | yieK | predicted 6‑phosphogluconolactonase | |||||
| * | ? | W3110S.gb | = 1499913 | 59 (1.280) | 21 (0.580) +ATATCACCAG |
10/76 | NT | 31.0% | coding (1314/1626 nt) | mdoD | glucan biosynthesis protein, periplasmic |
| ? | W3110S.gb | 1787483 = | 59 (1.280) | coding (1344/2379 nt) | pps | phosphoenolpyruvate synthase | |||||
| * | ? | W3110S.gb | = 1651231 | 39 (0.850) | 4 (0.100) +GGACAA |
3/84 | NT | 12.0% | intergenic (+476/‑92) | ydfC/dicB | hypothetical protein/cell division inhibition protein |
| ? | W3110S.gb | = 2993865 | 28 (0.610) | intergenic (‑117/+105) | ygeL/ygeM | hypothetical protein/hypothetical protein | |||||
| * | ? | W3110S.gb | 1686539 = | 44 (0.960) | 6 (0.150) +CAACG |
3/86 | NT | 13.0% | coding (567/930 nt) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| ? | W3110S.gb | 3346688 = | 46 (1.000) | coding (256/492 nt) | ptsN | sugar‑specific enzyme IIA component of PTS | |||||
| * | ? | W3110S.gb | 2018571 = | 4 (0.090) | 45 (1.040) | 26/90 | NT | 92.3% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
| * | ? | W3110S.gb | = 2018583 | 4 (0.090) | 41 (0.930) | 32/92 | NT | 91.4% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
| * | ? | W3110S.gb | = 2107291 | 65 (1.410) | 87 (1.930) +A |
25/94 | NT | 62.4% | coding (904/993 nt) | wbbI | conserved hypothetical protein |
| ? | W3110S.gb | = 2809956 | 42 (0.910) | coding (531/531 nt) | mprA | DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 57 (1.270) | 37/94 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 50 (1.140) | 29/92 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 62 (1.380) | 34/94 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 42 (0.910) | 23/96 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 52 (1.130) | 35/96 | NT | 85.2% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 9 (0.200) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | W3110S.gb | 2564137 = | 4 (0.090) | 11 (0.270) +ATGCG |
9/86 | NT | 42.7% | coding (1404/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase |
| ? | W3110S.gb | 4011453 = | 29 (0.630) | coding (575/2736 nt) | rbbA | fused ribosome‑associated ATPases | |||||
| * | ? | W3110S.gb | = 2672755 | 27 (0.590) | 8 (0.210) +AATAGGGA |
6/80 | NT | 26.2% | coding (590/873 nt) | yphB | conserved hypothetical protein |
| ? | W3110S.gb | 4216206 = | NA (NA) | noncoding (2572/2904 nt) | rrlE | 23S ribosomal RNA | |||||
| * | ? | W3110S.gb | 2691202 = | 49 (1.070) | 12 (0.310) +GTCAGTTC |
5/80 | NT | 19.9% | coding (2998/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase |
| ? | W3110S.gb | 2980369 = | 67 (1.460) | coding (470/1419 nt) | araE | arabinose transporter | |||||
| * | ? | W3110S.gb | = 2703833 | 9 (0.200) | 19 (0.430) +TT |
4/92 | NT | 41.0% | coding (133/975 nt) | lepB | leader peptidase |
| ? | W3110S.gb | 3121548 = | 48 (1.040) | coding (914/2172 nt) | glcB | malate synthase G | |||||
| * | ? | W3110S.gb | = 3285126 | 67 (1.460) | 7 (0.180) +CGGTTGTG |
4/80 | NT | 14.1% | coding (587/804 nt) | agaC | N‑acetylgalactosamine‑specific enzyme IIC component of PTS |
| ? | W3110S.gb | 3380815 = | 35 (0.760) | coding (218/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | W3110S.gb | 3748799 = | 2 (0.040) | 69 (1.500) | 40/96 | NT | 97.2% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
| * | ? | W3110S.gb | = 3750592 | 0 (0.000) | 40 (0.950) | 26/88 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb | 3751792 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
| * | ? | W3110S.gb | 4547364 = | 8 (0.170) | 19 (0.510) | 11/78 | NT | 81.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 2 (0.050) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | W3110S.gb | = 4547372 | 9 (0.200) | 18 (0.480) | 15/78 | NT | 79.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 2 (0.050) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||