breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	864	A→T	5.7%	A176A (GCA→GCT)	thrA →	fused aspartate kinase/homoserine dehydrogenase 1
RA	874	C→A	5.3%	P180T (CCG→ACG)	thrA →	fused aspartate kinase/homoserine dehydrogenase 1
RA	4,139	G→A	5.2%	D136N (GAT→AAT) ‡	thrC →	threonine synthase
RA	4,140	A→T	5.3%	D136V (GAT→GTT) ‡	thrC →	threonine synthase
RA	4,141	T→C	5.2%	D136D (GAT→GAC) ‡	thrC →	threonine synthase
RA	11,127	C→G	10.6%	S77T (AGT→ACT)  L100V (CTA→GTA)	yaaW ← mbiA →	putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA
RA	11,136	C→A	8.2%	G74V (GGT→GTT)  P103T (CCA→ACA)	yaaW ← mbiA →	putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA
RA	14,116	A→G	5.8%	intergenic (+37/‑52)	dnaK → / → dnaJ	chaperone protein DnaK/chaperone protein DnaJ
RA	14,119	G→A	5.8%	intergenic (+40/‑49)	dnaK → / → dnaJ	chaperone protein DnaK/chaperone protein DnaJ
RA	14,124	T→A	5.6%	intergenic (+45/‑44)	dnaK → / → dnaJ	chaperone protein DnaK/chaperone protein DnaJ
RA	14,129	T→C	5.7%	intergenic (+50/‑39)	dnaK → / → dnaJ	chaperone protein DnaK/chaperone protein DnaJ
RA	14,132	C→T	6.5%	intergenic (+53/‑36)	dnaK → / → dnaJ	chaperone protein DnaK/chaperone protein DnaJ
RA	32,907	T→C	8.0%	A697A (GCT→GCC)	carB →	carbamoyl phosphate synthetase subunit beta
RA	32,911	G→T	8.2%	E699* (GAA→TAA) ‡	carB →	carbamoyl phosphate synthetase subunit beta
RA	32,912	A→C	8.2%	E699A (GAA→GCA) ‡	carB →	carbamoyl phosphate synthetase subunit beta
RA	32,916	G→A	8.3%	M700I (ATG→ATA)	carB →	carbamoyl phosphate synthetase subunit beta
RA	36,252	T→A	7.0%	intergenic (‑90/+19)	caiD ← / ← caiC	crotonobetainyl‑CoA hydratase/carnitine‑CoA ligase
RA	36,254	G→C	6.7%	intergenic (‑92/+17)	caiD ← / ← caiC	crotonobetainyl‑CoA hydratase/carnitine‑CoA ligase
RA	36,256	T→A	6.9%	intergenic (‑94/+15)	caiD ← / ← caiC	crotonobetainyl‑CoA hydratase/carnitine‑CoA ligase
RA	37,307	T→A	9.4%	D173V (GAC→GTC)	caiC ←	carnitine‑CoA ligase
RA	37,309	A→T	9.7%	T172T (ACT→ACA) ‡	caiC ←	carnitine‑CoA ligase
RA	37,311	T→A	9.4%	T172S (ACT→TCT) ‡	caiC ←	carnitine‑CoA ligase
RA	41,631	A→C	7.3%	S101A (TCT→GCT)	caiT ←	L‑carnitine:gamma‑butyrobetaine antiporter
RA	53,376	G→A	6.1%	P14L (CCC→CTC)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	53,379	T→C	5.9%	E13G (GAG→GGG)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	59,301	A→C	6.0%	intergenic (+22/+386)	yabQ → / ← rluA	protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase
RA	62,789	A→G	5.2%	L159P (CTC→CCC)	rapA ←	RNA polymerase‑binding ATPase and RNAP recycling factor
RA	65,808	T→A	7.4%	intergenic (‑28/+47)	polB ← / ← araD	DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase AraD
RA	65,809	G→T	7.4%	intergenic (‑29/+46)	polB ← / ← araD	DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase AraD
RA	65,811	G→C	7.1%	intergenic (‑31/+44)	polB ← / ← araD	DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase AraD
RA	65,813	A→C	7.7%	intergenic (‑33/+42)	polB ← / ← araD	DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase AraD
RA	65,814	T→A	7.7%	intergenic (‑34/+41)	polB ← / ← araD	DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase AraD
RA	72,205	T→G	8.0%	intergenic (+90/+24)	yabI → / ← thiQ	DedA family protein YabI/thiamine ABC transporter ATP binding subunit
RA	72,206	C→A	8.3%	intergenic (+91/+23)	yabI → / ← thiQ	DedA family protein YabI/thiamine ABC transporter ATP binding subunit
RA	72,212	G→T	7.2%	intergenic (+97/+17)	yabI → / ← thiQ	DedA family protein YabI/thiamine ABC transporter ATP binding subunit
RA	72,213	C→T	7.2%	intergenic (+98/+16)	yabI → / ← thiQ	DedA family protein YabI/thiamine ABC transporter ATP binding subunit
RA	75,753	A→C	6.0%	L516W (TTG→TGG)	sgrR ←	DNA‑binding transcriptional dual regulator SgrR
RA	75,756	A→T	6.0%	L515* (TTA→TAA)	sgrR ←	DNA‑binding transcriptional dual regulator SgrR
RA	75,759	G→T	5.8%	P514Q (CCA→CAA)	sgrR ←	DNA‑binding transcriptional dual regulator SgrR
RA	83,587	A→C	7.8%	intergenic (‑58/+35)	leuA ← / ← leuL	2‑isopropylmalate synthase/leu operon leader peptide
RA	83,590	G→T	7.0%	intergenic (‑61/+32)	leuA ← / ← leuL	2‑isopropylmalate synthase/leu operon leader peptide
RA	86,370	T→G	6.9%	F247L (TTT→TTG)	ilvI →	acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit
RA	86,375	C→A	6.9%	A249E (GCA→GAA)	ilvI →	acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit
RA	89,056:1	+A	5.5%	intergenic (+24/‑578)	cra → / → mraZ	DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ
RA	89,058	T→G	5.5%	intergenic (+26/‑576)	cra → / → mraZ	DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ
RA	89,062	T→A	5.3%	intergenic (+30/‑572)	cra → / → mraZ	DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ
RA	89,068	Δ1 bp	5.6%	intergenic (+36/‑566)	cra → / → mraZ	DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ
RA	95,059	A→G	8.6%	N137S (AAC→AGC)	murF →	D‑alanyl‑D‑alanine‑adding enzyme
RA	95,062	A→T	8.4%	D138V (GAC→GTC)	murF →	D‑alanyl‑D‑alanine‑adding enzyme
RA	95,070	G→A	9.7%	V141I (GTA→ATA) ‡	murF →	D‑alanyl‑D‑alanine‑adding enzyme
RA	95,071	T→C	10.6%	V141A (GTA→GCA) ‡	murF →	D‑alanyl‑D‑alanine‑adding enzyme
RA	95,079	A→T	9.6%	T144S (ACG→TCG)	murF →	D‑alanyl‑D‑alanine‑adding enzyme
RA	99,895	G→A	6.7%	W84* (TGG→TGA)	murG →	N‑acetylglucosaminyl transferase
RA	99,898	T→C	6.9%	R85R (CGT→CGC)	murG →	N‑acetylglucosaminyl transferase
RA	106,831	T→A	6.5%	I92N (ATT→AAT)	lpxC →	UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase
RA	111,013	G→A	7.2%	intergenic (+29/‑31)	secA → / → mutT	protein translocation ATPase/8‑oxo‑dGTP diphosphatase
RA	111,016	T→C	7.2%	intergenic (+32/‑28)	secA → / → mutT	protein translocation ATPase/8‑oxo‑dGTP diphosphatase
RA	114,507	A→T	6.8%	intergenic (+20/+15)	guaC → / ← hofC	GMP reductase/inner membrane protein HofC
RA	120,154	Δ1 bp	7.9%	intergenic (+19/+24)	ampE → / ← aroP	protein AmpE/aromatic amino acid:H(+) symporter AroP
RA	120,158:1	+A	8.0%	intergenic (+23/+20)	ampE → / ← aroP	protein AmpE/aromatic amino acid:H(+) symporter AroP
RA	120,999	T→C	5.5%	T185A (ACC→GCC)	aroP ←	aromatic amino acid:H(+) symporter AroP
RA	121,000	C→G	5.3%	A184A (GCG→GCC)	aroP ←	aromatic amino acid:H(+) symporter AroP
RA	121,004	T→C	5.5%	Q183R (CAG→CGG)	aroP ←	aromatic amino acid:H(+) symporter AroP
RA	121,007	G→A	5.2%	P182L (CCG→CTG)	aroP ←	aromatic amino acid:H(+) symporter AroP
RA	121,011	C→G	5.6%	G181R (GGC→CGC)	aroP ←	aromatic amino acid:H(+) symporter AroP
RA	121,012	G→A	5.6%	G180G (GGC→GGT)	aroP ←	aromatic amino acid:H(+) symporter AroP
RA	125,387	C→T	86.1%	Q791* (CAG→TAG)	aceE →	pyruvate dehydrogenase E1 component
RA	134,166	A→G	8.9%	Q851R (CAG→CGG)	acnB →	hypothetical protein
RA	134,169	A→G	9.1%	Y852C (TAC→TGC) ‡	acnB →	hypothetical protein
RA	134,170	C→T	9.2%	Y852Y (TAC→TAT) ‡	acnB →	hypothetical protein
RA	134,173	C→T	9.2%	T853T (ACC→ACT)	acnB →	hypothetical protein
RA	136,530	C→T	7.8%	intergenic (‑66/+40)	speE ← / ← yacC	spermidine synthase/putative lipoprotein YacC
RA	136,532	G→C	7.4%	intergenic (‑68/+38)	speE ← / ← yacC	spermidine synthase/putative lipoprotein YacC
RA	136,535	G→C	7.5%	intergenic (‑71/+35)	speE ← / ← yacC	spermidine synthase/putative lipoprotein YacC
RA	136,537	A→G	7.5%	intergenic (‑73/+33)	speE ← / ← yacC	spermidine synthase/putative lipoprotein YacC
RA	138,662	T→G	6.3%	intergenic (+29/+173)	cueO → / ← gcd	cuprous oxidase/multicopper oxidase with role in copper homeostasis/quinoprotein glucose dehydrogenase
RA	138,663	C→A	6.2%	intergenic (+30/+172)	cueO → / ← gcd	cuprous oxidase/multicopper oxidase with role in copper homeostasis/quinoprotein glucose dehydrogenase
RA	138,664	T→G	6.0%	intergenic (+31/+171)	cueO → / ← gcd	cuprous oxidase/multicopper oxidase with role in copper homeostasis/quinoprotein glucose dehydrogenase
RA	138,665	C→A	6.2%	intergenic (+32/+170)	cueO → / ← gcd	cuprous oxidase/multicopper oxidase with role in copper homeostasis/quinoprotein glucose dehydrogenase
RA	144,806	C→A	5.2%	S77* (TCA→TAA)	yadI →	putative PTS enzyme IIA component YadI
RA	144,809	T→A	5.4%	L78* (TTA→TAA)	yadI →	putative PTS enzyme IIA component YadI
RA	144,812	T→G	5.4%	L79* (TTA→TGA)	yadI →	putative PTS enzyme IIA component YadI
RA	146,289	G→T	6.8%	V403V (GTG→GTT)	yadE →	putative polysaccharide deacetylase lipoprotein
RA	146,291	G→C	6.9%	S404T (AGT→ACT)	yadE →	putative polysaccharide deacetylase lipoprotein
RA	146,293	A→C	7.0%	N405H (AAC→CAC)	yadE →	putative polysaccharide deacetylase lipoprotein
RA	146,733	G→A	9.9%	intergenic (‑39/‑235)	panD ← / → rpnC	aspartate 1‑decarboxylase proenzyme/recombination‑promoting nuclease RpnC
RA	146,734	A→T	9.8%	intergenic (‑40/‑234)	panD ← / → rpnC	aspartate 1‑decarboxylase proenzyme/recombination‑promoting nuclease RpnC
RA	146,735	T→C	9.9%	intergenic (‑41/‑233)	panD ← / → rpnC	aspartate 1‑decarboxylase proenzyme/recombination‑promoting nuclease RpnC
RA	151,519	A→C	7.5%	I27M (ATT→ATG)	yadK ←	putative fimbrial protein YadK
RA	151,522	G→T	8.3%	A26A (GCC→GCA)	yadK ←	putative fimbrial protein YadK
RA	153,928	G→A	5.3%	S500L (TCA→TTA)	htrE ←	putative fimbrial usher protein HtrE
RA	153,930	G→T	5.2%	Y499* (TAC→TAA)	htrE ←	putative fimbrial usher protein HtrE
RA	153,933	A→C	5.1%	N498K (AAT→AAG) ‡	htrE ←	putative fimbrial usher protein HtrE
RA	153,935	T→C	5.3%	N498D (AAT→GAT) ‡	htrE ←	putative fimbrial usher protein HtrE
RA	167,293	G→C	5.2%	intergenic (+29/‑191)	mrcB → / → fhuA	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor
RA	167,917	A→C	12.2%	Q145P (CAG→CCG) ‡	fhuA →	ferrichrome outer membrane transporter/phage receptor
RA	167,918	G→C	12.1%	Q145H (CAG→CAC) ‡	fhuA →	ferrichrome outer membrane transporter/phage receptor
RA	167,919	G→T	12.5%	G146C (GGC→TGC)	fhuA →	ferrichrome outer membrane transporter/phage receptor
RA	172,496	A→G	8.8%	Q345Q (CAA→CAG)	fhuB →	iron(III) hydroxamate ABC transporter membrane subunit
RA	172,499	T→C	8.6%	H346H (CAT→CAC)	fhuB →	iron(III) hydroxamate ABC transporter membrane subunit
RA	172,500	G→A	8.6%	V347M (GTG→ATG)	fhuB →	iron(III) hydroxamate ABC transporter membrane subunit
RA	172,503	C→T	8.5%	L348L (CTG→TTG)	fhuB →	iron(III) hydroxamate ABC transporter membrane subunit
RA	176,977	A→G	8.5%	intergenic (+23/+24)	erpA → / ← yadS	iron‑sulfur cluster insertion protein ErpA/conserved inner membrane protein YadS
RA	176,978	A→T	8.3%	intergenic (+24/+23)	erpA → / ← yadS	iron‑sulfur cluster insertion protein ErpA/conserved inner membrane protein YadS
RA	176,979	C→T	8.7%	intergenic (+25/+22)	erpA → / ← yadS	iron‑sulfur cluster insertion protein ErpA/conserved inner membrane protein YadS
RA	177,405	G→C	6.8%	L74V (CTG→GTG)	yadS ←	conserved inner membrane protein YadS
RA	177,408	T→G	6.4%	M73L (ATG→CTG)	yadS ←	conserved inner membrane protein YadS
RA	177,409	G→C	6.4%	S72R (AGC→AGG) ‡	yadS ←	conserved inner membrane protein YadS
RA	177,410	C→A	6.6%	S72I (AGC→ATC) ‡	yadS ←	conserved inner membrane protein YadS
RA	177,413	G→C	6.6%	T71S (ACC→AGC)	yadS ←	conserved inner membrane protein YadS
RA	202,259	C→A	5.2%	G53G (GGC→GGA)	fabZ →	3‑hydroxy‑acyl‑[acyl‑carrier‑protein] dehydratase
RA	202,260	C→A	5.2%	H54N (CAT→AAT)	fabZ →	3‑hydroxy‑acyl‑[acyl‑carrier‑protein] dehydratase
RA	202,263	T→G	5.2%	F55V (TTC→GTC) ‡	fabZ →	3‑hydroxy‑acyl‑[acyl‑carrier‑protein] dehydratase
RA	202,264	T→G	5.2%	F55C (TTC→TGC) ‡	fabZ →	3‑hydroxy‑acyl‑[acyl‑carrier‑protein] dehydratase
RA	207,483	A→C	6.3%	V786V (GTA→GTC)	dnaE →	DNA polymerase III subunit alpha
RA	207,486	G→T	6.7%	M787I (ATG→ATT)	dnaE →	DNA polymerase III subunit alpha
RA	209,164	G→T	6.2%	A182S (GCA→TCA)	accA →	acetyl‑CoA carboxyltransferase subunit alpha
RA	209,171	A→G	6.3%	N184S (AAC→AGC) ‡	accA →	acetyl‑CoA carboxyltransferase subunit alpha
RA	209,172	C→G	7.3%	N184K (AAC→AAG) ‡	accA →	acetyl‑CoA carboxyltransferase subunit alpha
RA	209,173	C→T	7.2%	L185L (CTG→TTG)	accA →	acetyl‑CoA carboxyltransferase subunit alpha
RA	231,007	C→A	6.8%	intergenic (‑126/‑115)	yafC ← / → yafD	putative LysR family transcriptional regulator YafC/endonuclease/exonuclease/phosphatase domain‑containing protein YafD
RA	231,008	T→G	6.7%	intergenic (‑127/‑114)	yafC ← / → yafD	putative LysR family transcriptional regulator YafC/endonuclease/exonuclease/phosphatase domain‑containing protein YafD
RA	238,141	G→A	5.6%	intergenic (+21/+116)	yafT → / ← ykfM	lipoprotein YafT/uncharacterized protein YkfM
RA	238,146	T→C	5.2%	intergenic (+26/+111)	yafT → / ← ykfM	lipoprotein YafT/uncharacterized protein YkfM
RA	242,344	C→G	5.2%	P320P (CCG→CCC)	fadE ←	acyl‑CoA dehydrogenase
RA	254,223	A→T	6.7%	intergenic (+21/+36)	prfH → / ← pepD	putative peptide chain release factor/peptidase D
RA	254,228	A→T	7.2%	intergenic (+26/+31)	prfH → / ← pepD	putative peptide chain release factor/peptidase D
RA	254,233	A→T	6.7%	intergenic (+31/+26)	prfH → / ← pepD	putative peptide chain release factor/peptidase D
RA	254,238	A→T	6.4%	intergenic (+36/+21)	prfH → / ← pepD	putative peptide chain release factor/peptidase D
RA	256,449	T→C	14.7%	intergenic (+14/‑78)	gpt → / → frsA	xanthine‑guanine phsophoribosyltransferase/fermentation‑respiration switch protein
RA	256,454	C→G	14.5%	intergenic (+19/‑73)	gpt → / → frsA	xanthine‑guanine phsophoribosyltransferase/fermentation‑respiration switch protein
RA	256,459	G→A	15.0%	intergenic (+24/‑68)	gpt → / → frsA	xanthine‑guanine phsophoribosyltransferase/fermentation‑respiration switch protein
MC JC	257,908	Δ776 bp	100%		insB9–[crl]	insB9, insA9, [crl]
RA	265,573	G→A	7.8%	intergenic (‑30/+47)	ykfF ← / ← ykfB	CP4‑6 prophage; protein YkfF/CP4‑6 prophage; protein YkfB
RA	265,578	C→T	7.8%	intergenic (‑35/+42)	ykfF ← / ← ykfB	CP4‑6 prophage; protein YkfF/CP4‑6 prophage; protein YkfB
RA	265,579	T→A	7.7%	intergenic (‑36/+41)	ykfF ← / ← ykfB	CP4‑6 prophage; protein YkfF/CP4‑6 prophage; protein YkfB
RA	265,582	T→A	8.3%	intergenic (‑39/+38)	ykfF ← / ← ykfB	CP4‑6 prophage; protein YkfF/CP4‑6 prophage; protein YkfB
RA	265,583	A→G	7.9%	intergenic (‑40/+37)	ykfF ← / ← ykfB	CP4‑6 prophage; protein YkfF/CP4‑6 prophage; protein YkfB
RA	265,588	T→C	7.8%	intergenic (‑45/+32)	ykfF ← / ← ykfB	CP4‑6 prophage; protein YkfF/CP4‑6 prophage; protein YkfB
RA	267,774	G→A	5.5%	R78C (CGT→TGT)	yafZ ←	CP4‑6 prophage; conserved protein YafZ
RA	292,302	C→G	10.5%	intergenic (+71/+20)	yagJ → / ← yagK	CP4‑6 prophage; protein YagJ/CP4‑6 prophage; uncharacterized protein YagK
RA	299,377	A→T	7.8%	Y520N (TAC→AAC)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	299,378	A→T	7.8%	V519V (GTT→GTA)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	300,689	G→T	9.4%	T82T (ACC→ACA)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	300,692	A→C	9.7%	I81M (ATT→ATG)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	300,695	G→T	9.8%	V80V (GTC→GTA)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	300,698	A→C	10.3%	A79A (GCT→GCG)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	302,225	T→A	5.8%	N117Y (AAT→TAT)	paoA ←	aldehyde dehydrogenase, Fe‑S subunit
RA	302,227	A→T	6.0%	L116H (CTT→CAT)	paoA ←	aldehyde dehydrogenase, Fe‑S subunit
RA	304,791	C→G	5.5%	E139Q (GAG→CAG)	ecpE ←	putative fimbrial chaperone EcpE
RA	304,800	C→G	5.6%	V136L (GTC→CTC)	ecpE ←	putative fimbrial chaperone EcpE
RA	312,306	A→T	6.4%	I65I (ATA→ATT)	ykgL →	uncharacterized protein YkgL
RA	312,308	A→T	6.3%	N66I (AAC→ATC)	ykgL →	uncharacterized protein YkgL
RA	314,255	T→C	9.5%	intergenic (‑450/‑102)	ykgP ← / → eaeH	putative oxidoreductase/putative porin domain‑containing protein EaeH
RA	314,258	G→A	8.8%	intergenic (‑453/‑99)	ykgP ← / → eaeH	putative oxidoreductase/putative porin domain‑containing protein EaeH
RA	318,649	T→C	6.6%	intergenic (‑82/+27)	rclB ← / ← rclA	DUF1471 domain‑containing protein RclB/putative pyridine nucleotide‑disulfide oxidoreductase RclA
RA	318,651	T→A	7.3%	intergenic (‑84/+25)	rclB ← / ← rclA	DUF1471 domain‑containing protein RclB/putative pyridine nucleotide‑disulfide oxidoreductase RclA
RA	318,652	T→A	6.7%	intergenic (‑85/+24)	rclB ← / ← rclA	DUF1471 domain‑containing protein RclB/putative pyridine nucleotide‑disulfide oxidoreductase RclA
RA	318,654	G→A	6.7%	intergenic (‑87/+22)	rclB ← / ← rclA	DUF1471 domain‑containing protein RclB/putative pyridine nucleotide‑disulfide oxidoreductase RclA
RA	321,483	C→A	6.7%	intergenic (+402/‑125)	rclR → / → ykgE	DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE
RA	321,484	A→T	6.7%	intergenic (+403/‑124)	rclR → / → ykgE	DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE
RA	321,485	T→G	6.3%	intergenic (+404/‑123)	rclR → / → ykgE	DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE
RA	324,874	T→G	9.2%	N164T (AAC→ACC) ‡	ykgH ←	uncharacterized protein YkgH
RA	324,875	T→A	9.2%	N164Y (AAC→TAC) ‡	ykgH ←	uncharacterized protein YkgH
RA	324,876	C→A	10.8%	R163S (AGG→AGT)	ykgH ←	uncharacterized protein YkgH
RA	329,503	A→G	6.2%	N14S (AAT→AGT)	betT →	choline:H(+) symporter
RA	329,509	T→C	6.1%	V16A (GTG→GCG)	betT →	choline:H(+) symporter
RA	329,512	T→A	5.7%	V17E (GTG→GAG)	betT →	choline:H(+) symporter
RA	329,514	T→G	6.1%	F18V (TTT→GTT) ‡	betT →	choline:H(+) symporter
RA	329,516	T→G	5.9%	F18L (TTT→TTG) ‡	betT →	choline:H(+) symporter
RA	329,519	C→A	6.1%	Y19* (TAC→TAA)	betT →	choline:H(+) symporter
RA	329,521	C→A	5.6%	T20N (ACC→AAC)	betT →	choline:H(+) symporter
RA	329,523	T→A	5.9%	S21T (TCC→ACC)	betT →	choline:H(+) symporter
RA	329,526	G→A	6.1%	A22T (GCC→ACC)	betT →	choline:H(+) symporter
RA	329,532	C→T	6.1%	L24L (CTG→TTG)	betT →	choline:H(+) symporter
RA	332,891	G→A	6.2%	R174H (CGC→CAC)	pdeL →	DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL
RA	335,166	T→A	6.5%	intergenic (‑144/‑114)	yahC ← / → yahD	uncharacterized protein YahC/ankyrin repeat‑containing protein YahD
RA	341,717	A→T	6.6%	N198I (AAT→ATT)	yahJ →	putative deaminase with metallo‑dependent hydrolase domain
RA	360,264	G→A	5.5%	L91L (CTG→CTA)	cynX →	cyanate transporter
RA	360,265	C→A	5.5%	L92I (CTT→ATT) ‡	cynX →	cyanate transporter
RA	360,266	T→G	6.4%	L92R (CTT→CGT) ‡	cynX →	cyanate transporter
RA	361,220	A→C	8.1%	intergenic (+74/+29)	cynX → / ← lacA	cyanate transporter/galactoside O‑acetyltransferase
RA	361,223	G→T	8.5%	intergenic (+77/+26)	cynX → / ← lacA	cyanate transporter/galactoside O‑acetyltransferase
RA	361,224	C→G	9.3%	intergenic (+78/+25)	cynX → / ← lacA	cyanate transporter/galactoside O‑acetyltransferase
RA	361,225	A→C	8.2%	intergenic (+79/+24)	cynX → / ← lacA	cyanate transporter/galactoside O‑acetyltransferase
RA	361,228	G→T	9.2%	intergenic (+82/+21)	cynX → / ← lacA	cyanate transporter/galactoside O‑acetyltransferase
RA	363,792	C→A	6.9%	T838T (ACG→ACT)	lacZ ←	beta‑galactosidase
RA	366,556:1	+T	6.2%	coding (955/1083 nt)	lacI ←	DNA‑binding transcriptional repressor LacI
RA	366,563	Δ1 bp	6.8%	coding (948/1083 nt)	lacI ←	DNA‑binding transcriptional repressor LacI
RA	374,682	C→T	7.8%	P272L (CCG→CTG) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	374,683	G→C	8.9%	P272P (CCG→CCC) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	374,688	G→C	6.6%	R274P (CGA→CCA) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	374,689	A→G	6.7%	R274R (CGA→CGG) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	374,937	G→A	6.4%	intergenic (+56/‑522)	mhpE → / → mhpT	4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter
RA	374,938	C→A	6.3%	intergenic (+57/‑521)	mhpE → / → mhpT	4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter
RA	377,499	A→G	5.4%	intergenic (+188/+36)	yaiL → / ← frmB	DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB
RA	377,500	A→C	5.4%	intergenic (+189/+35)	yaiL → / ← frmB	DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB
RA	377,506	T→G	5.7%	intergenic (+195/+29)	yaiL → / ← frmB	DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB
RA	377,507	C→A	6.8%	intergenic (+196/+28)	yaiL → / ← frmB	DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB
RA	377,513	G→T	6.1%	intergenic (+202/+22)	yaiL → / ← frmB	DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB
RA	377,514	C→T	6.1%	intergenic (+203/+21)	yaiL → / ← frmB	DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB
RA	380,105	A→C	10.9%	G246G (GGT→GGG)	yaiO ←	outer membrane protein YaiO
RA	383,897	C→T	11.6%	M13I (ATG→ATA) ‡	yaiP ←	putative glucosyltransferase
RA	383,898	A→G	11.6%	M13T (ATG→ACG) ‡	yaiP ←	putative glucosyltransferase
RA	397,273	C→T	6.2%	A212V (GCC→GTC)	sbmA →	peptide antibiotic/peptide nucleic acid transporter
RA	397,277	C→G	6.3%	I213M (ATC→ATG)	sbmA →	peptide antibiotic/peptide nucleic acid transporter
RA	397,281	A→G	6.0%	T215A (ACG→GCG)	sbmA →	peptide antibiotic/peptide nucleic acid transporter
RA	399,801	A→G	8.0%	Q70R (CAA→CGA)	yaiZ →	DUF2754 domain‑containing protein YaiZ
RA	399,806	G→T	7.7%	intergenic (+1/+23)	yaiZ → / ← ddlA	DUF2754 domain‑containing protein YaiZ/D‑alanine‑‑D‑alanine ligase A
RA	399,808	A→T	8.6%	intergenic (+3/+21)	yaiZ → / ← ddlA	DUF2754 domain‑containing protein YaiZ/D‑alanine‑‑D‑alanine ligase A
RA	399,810	A→C	8.7%	intergenic (+5/+19)	yaiZ → / ← ddlA	DUF2754 domain‑containing protein YaiZ/D‑alanine‑‑D‑alanine ligase A
RA	399,815	C→T	8.1%	intergenic (+10/+14)	yaiZ → / ← ddlA	DUF2754 domain‑containing protein YaiZ/D‑alanine‑‑D‑alanine ligase A
RA	404,115	G→C	9.4%	G138A (GGC→GCC)	dgcC →	diguanylate cyclase DgcC
RA	404,117	G→T	9.5%	G139C (GGC→TGC)	dgcC →	diguanylate cyclase DgcC
RA	414,827	A→C	6.7%	I309M (ATT→ATG)	sbcC ←	ATP dependent, structure specific DNA nuclease ‑ SbcC subunit
RA	414,832	G→T	7.2%	H308N (CAT→AAT)	sbcC ←	ATP dependent, structure specific DNA nuclease ‑ SbcC subunit
RA	417,565	A→C	6.3%	T142P (ACA→CCA)	phoB →	DNA‑binding transcriptional dual regulator PhoB
RA	417,570	T→A	6.6%	S143S (TCT→TCA)	phoB →	DNA‑binding transcriptional dual regulator PhoB
RA	417,572	A→T	6.6%	H144L (CAC→CTC)	phoB →	DNA‑binding transcriptional dual regulator PhoB
RA	417,574	C→G	6.5%	R145G (CGA→GGA) ‡	phoB →	DNA‑binding transcriptional dual regulator PhoB
RA	417,576	A→T	6.5%	R145R (CGA→CGT) ‡	phoB →	DNA‑binding transcriptional dual regulator PhoB
RA	417,578	T→A	6.4%	V146E (GTG→GAG)	phoB →	DNA‑binding transcriptional dual regulator PhoB
RA	418,803	A→G	5.1%	I305M (ATA→ATG)	phoR →	sensory histidine kinase PhoR
RA	429,553	T→A	7.4%	Y17N (TAT→AAT) ‡	secF →	Sec translocon accessory complex subunit SecF
RA	429,554	A→T	8.1%	Y17F (TAT→TTT) ‡	secF →	Sec translocon accessory complex subunit SecF
RA	429,555	T→A	7.4%	Y17* (TAT→TAA) ‡	secF →	Sec translocon accessory complex subunit SecF
RA	431,107	A→T	6.8%	intergenic (+155/+22)	yajD → / ← tsx	HNH nuclease family protein/nucleoside‑specific channel‑forming protein Tsx
RA	431,109	A→T	6.4%	intergenic (+157/+20)	yajD → / ← tsx	HNH nuclease family protein/nucleoside‑specific channel‑forming protein Tsx
RA	431,111	A→T	6.9%	intergenic (+159/+18)	yajD → / ← tsx	HNH nuclease family protein/nucleoside‑specific channel‑forming protein Tsx
RA	446,786	C→T	16.5%	intergenic (‑120/+29)	yajR ← / ← cyoE	putative major facilitator superfamily transport protein YajR/heme O synthase
RA	446,787	G→A	15.2%	intergenic (‑121/+28)	yajR ← / ← cyoE	putative major facilitator superfamily transport protein YajR/heme O synthase
RA	446,788	T→C	16.7%	intergenic (‑122/+27)	yajR ← / ← cyoE	putative major facilitator superfamily transport protein YajR/heme O synthase
RA	446,789	A→G	16.8%	intergenic (‑123/+26)	yajR ← / ← cyoE	putative major facilitator superfamily transport protein YajR/heme O synthase
RA	448,965	G→A	5.7%	H559H (CAC→CAT) ‡	cyoB ←	cytochrome bo3 ubiquinol oxidase subunit 1
RA	448,966	T→C	5.7%	H559R (CAC→CGC) ‡	cyoB ←	cytochrome bo3 ubiquinol oxidase subunit 1
RA	454,853	T→C	7.9%	intergenic (+64/‑280)	bolA → / → tig	DNA‑binding transcriptional dual regulator BolA/trigger factor
RA	454,856	G→A	7.5%	intergenic (+67/‑277)	bolA → / → tig	DNA‑binding transcriptional dual regulator BolA/trigger factor
RA	464,354	C→A	8.3%	intergenic (+46/‑48)	ybaV → / → fadM	helix‑hairpin‑helix 3 family protein/thioesterase III
RA	464,356	A→T	8.6%	intergenic (+48/‑46)	ybaV → / → fadM	helix‑hairpin‑helix 3 family protein/thioesterase III
RA	464,358	T→G	8.5%	intergenic (+50/‑44)	ybaV → / → fadM	helix‑hairpin‑helix 3 family protein/thioesterase III
RA	475,971	C→G	6.3%	intergenic (+20/+11)	ybaY → / ← atl	PF09619 family lipoprotein YbaY/DNA base‑flipping protein
RA	475,972	C→G	6.4%	intergenic (+21/+10)	ybaY → / ← atl	PF09619 family lipoprotein YbaY/DNA base‑flipping protein
RA	480,236	C→G	9.2%	E25Q (GAG→CAG)	hha ←	hemolysin expression modulating protein
RA	480,237	C→G	10.0%	L24L (CTG→CTC)	hha ←	hemolysin expression modulating protein
RA	481,225	T→G	10.2%	intergenic (‑517/+29)	tomB ← / ← acrB	protein that modulates Hha toxicity/multidrug efflux pump RND permease AcrB
RA	481,228	C→A	9.2%	intergenic (‑520/+26)	tomB ← / ← acrB	protein that modulates Hha toxicity/multidrug efflux pump RND permease AcrB
RA	485,719	C→T	7.6%	intergenic (‑100/‑42)	acrA ← / → acrR	multidrug efflux pump membrane fusion lipoprotein AcrA/DNA‑binding transcriptional repressor AcrR
RA	485,720	A→G	7.6%	intergenic (‑101/‑41)	acrA ← / → acrR	multidrug efflux pump membrane fusion lipoprotein AcrA/DNA‑binding transcriptional repressor AcrR
RA	485,721	C→T	7.6%	intergenic (‑102/‑40)	acrA ← / → acrR	multidrug efflux pump membrane fusion lipoprotein AcrA/DNA‑binding transcriptional repressor AcrR
RA	485,722	A→G	7.6%	intergenic (‑103/‑39)	acrA ← / → acrR	multidrug efflux pump membrane fusion lipoprotein AcrA/DNA‑binding transcriptional repressor AcrR
RA	495,026	A→T	6.5%	intergenic (+16/‑94)	recR → / → htpG	DNA repair protein RecR/chaperone protein HtpG
RA	495,027	T→G	6.8%	intergenic (+17/‑93)	recR → / → htpG	DNA repair protein RecR/chaperone protein HtpG
RA	495,028	C→A	7.9%	intergenic (+18/‑92)	recR → / → htpG	DNA repair protein RecR/chaperone protein HtpG
RA	495,029	A→T	6.1%	intergenic (+19/‑91)	recR → / → htpG	DNA repair protein RecR/chaperone protein HtpG
RA	501,455	A→G	8.6%	intergenic (+26/+107)	gsk → / ← ybaL	inosine/guanosine kinase/putative transporter YbaL
RA	501,456	A→C	8.6%	intergenic (+27/+106)	gsk → / ← ybaL	inosine/guanosine kinase/putative transporter YbaL
RA	501,462	T→G	9.7%	intergenic (+33/+100)	gsk → / ← ybaL	inosine/guanosine kinase/putative transporter YbaL
RA	501,463	C→A	9.7%	intergenic (+34/+99)	gsk → / ← ybaL	inosine/guanosine kinase/putative transporter YbaL
RA	501,469	G→T	11.7%	intergenic (+40/+93)	gsk → / ← ybaL	inosine/guanosine kinase/putative transporter YbaL
RA	501,470	C→T	10.3%	intergenic (+41/+92)	gsk → / ← ybaL	inosine/guanosine kinase/putative transporter YbaL
RA	514,336	A→C	5.3%	D115A (GAT→GCT)	cueR →	DNA‑binding transcriptional dual regulator CueR
RA	514,339	A→T	5.4%	D116V (GAC→GTC)	cueR →	DNA‑binding transcriptional dual regulator CueR
RA	517,379	C→A	6.8%	intergenic (+17/+46)	fetB → / ← cnoX	putative iron ABC exporter membrane subunit FetB/chaperedoxin
RA	517,380	A→T	6.8%	intergenic (+18/+45)	fetB → / ← cnoX	putative iron ABC exporter membrane subunit FetB/chaperedoxin
RA	517,383	A→T	7.2%	intergenic (+21/+42)	fetB → / ← cnoX	putative iron ABC exporter membrane subunit FetB/chaperedoxin
RA	517,384	T→G	7.1%	intergenic (+22/+41)	fetB → / ← cnoX	putative iron ABC exporter membrane subunit FetB/chaperedoxin
RA	520,901	T→A	5.5%	D162E (GAT→GAA)	ybbP →	putative ABC transporter membrane subunit YbbP
RA	531,581	A→G	8.6%	L214S (TTG→TCG)	allS ←	DNA‑binding transcriptional activator AllS
RA	531,584	C→T	8.4%	R213Q (CGA→CAA)	allS ←	DNA‑binding transcriptional activator AllS
RA	543,059	T→A	8.5%	intergenic (+26/+202)	glxK → / ← allE	glycerate 2‑kinase 2/(S)‑ureidoglycine aminohydrolase
RA	543,062	T→A	8.4%	intergenic (+29/+199)	glxK → / ← allE	glycerate 2‑kinase 2/(S)‑ureidoglycine aminohydrolase
RA	543,091	G→C	5.8%	intergenic (+58/+170)	glxK → / ← allE	glycerate 2‑kinase 2/(S)‑ureidoglycine aminohydrolase
RA	543,094	G→C	5.8%	intergenic (+61/+167)	glxK → / ← allE	glycerate 2‑kinase 2/(S)‑ureidoglycine aminohydrolase
RA	543,210	A→T	5.2%	intergenic (+177/+51)	glxK → / ← allE	glycerate 2‑kinase 2/(S)‑ureidoglycine aminohydrolase
RA	543,747	T→A	6.4%	T100T (ACA→ACT) ‡	allE ←	(S)‑ureidoglycine aminohydrolase
RA	543,748	G→C	6.3%	T100R (ACA→AGA) ‡	allE ←	(S)‑ureidoglycine aminohydrolase
RA	543,749	T→A	6.3%	T100S (ACA→TCA) ‡	allE ←	(S)‑ureidoglycine aminohydrolase
RA	551,361	G→A	6.8%	intergenic (+29/+166)	ybcF → / ← purK	putative carbamate kinase/5‑(carboxyamino)imidazole ribonucleotide synthase
RA	551,362	C→A	6.8%	intergenic (+30/+165)	ybcF → / ← purK	putative carbamate kinase/5‑(carboxyamino)imidazole ribonucleotide synthase
RA	551,368	T→G	7.7%	intergenic (+36/+159)	ybcF → / ← purK	putative carbamate kinase/5‑(carboxyamino)imidazole ribonucleotide synthase
RA	551,370	G→C	7.8%	intergenic (+38/+157)	ybcF → / ← purK	putative carbamate kinase/5‑(carboxyamino)imidazole ribonucleotide synthase
RA	551,372	C→A	7.4%	intergenic (+40/+155)	ybcF → / ← purK	putative carbamate kinase/5‑(carboxyamino)imidazole ribonucleotide synthase
RA	551,378	T→G	7.9%	intergenic (+46/+149)	ybcF → / ← purK	putative carbamate kinase/5‑(carboxyamino)imidazole ribonucleotide synthase
RA	551,379	T→C	7.9%	intergenic (+47/+148)	ybcF → / ← purK	putative carbamate kinase/5‑(carboxyamino)imidazole ribonucleotide synthase
RA	553,885	G→A	5.7%	T19I (ACC→ATC)	lpxH ←	UDP‑2,3‑diacylglucosamine diphosphatase
RA	553,887	G→C	5.6%	I18M (ATC→ATG) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine diphosphatase
RA	553,889	T→C	5.6%	I18V (ATC→GTC) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine diphosphatase
RA	557,866	G→T	5.0%	intergenic (‑125/‑346)	folD ← / → sfmA	bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/ 5,10‑methylene‑tetrahydrofolate cyclohydrolase/putative fimbrial protein SfmA
RA	584,650	T→A	5.5%	intergenic (+220/+30)	appY → / ← ompT	DNA‑binding transcriptional activator AppY/outer membrane protease VII (outer membrane protein 3b)
RA	594,946	C→A	11.8%	Q166H (CAG→CAT) ‡	cusR ←	DNA‑binding transcriptional activator CusR
RA	594,948	G→C	11.7%	Q166E (CAG→GAG) ‡	cusR ←	DNA‑binding transcriptional activator CusR
RA	594,950	T→G	11.7%	H165P (CAT→CCT)	cusR ←	DNA‑binding transcriptional activator CusR
RA	595,519	T→A	6.7%	intergenic (‑76/‑81)	cusR ← / → cusC	DNA‑binding transcriptional activator CusR/copper/silver export system outer membrane channel
RA	595,520	T→A	6.7%	intergenic (‑77/‑80)	cusR ← / → cusC	DNA‑binding transcriptional activator CusR/copper/silver export system outer membrane channel
RA	603,391	C→G	7.4%	intergenic (+56/+25)	pheP → / ← ybdG	phenylalanine:H(+) symporter PheP/miniconductance mechanosensitive channel YbdG
RA	603,393	T→A	7.1%	intergenic (+58/+23)	pheP → / ← ybdG	phenylalanine:H(+) symporter PheP/miniconductance mechanosensitive channel YbdG
RA	603,395	C→G	7.4%	intergenic (+60/+21)	pheP → / ← ybdG	phenylalanine:H(+) symporter PheP/miniconductance mechanosensitive channel YbdG
RA	604,752	G→T	7.8%	intergenic (‑89/+19)	ybdG ← / ← nfsB	miniconductance mechanosensitive channel YbdG/NAD(P)H nitroreductase NfsB
RA	604,753	A→C	7.9%	intergenic (‑90/+18)	ybdG ← / ← nfsB	miniconductance mechanosensitive channel YbdG/NAD(P)H nitroreductase NfsB
RA	621,496	T→G	6.9%	S232R (AGT→CGT)	fepD ←	ferric enterobactin ABC transporter membrane subunit FebD
RA	621,499	C→G	8.0%	G231R (GGC→CGC)	fepD ←	ferric enterobactin ABC transporter membrane subunit FebD
RA	621,501	A→T	6.6%	L230Q (CTG→CAG)	fepD ←	ferric enterobactin ABC transporter membrane subunit FebD
RA	621,503	C→G	6.9%	A229A (GCG→GCC)	fepD ←	ferric enterobactin ABC transporter membrane subunit FebD
RA	621,506	C→A	6.9%	T228T (ACG→ACT)	fepD ←	ferric enterobactin ABC transporter membrane subunit FebD
RA	622,455	G→C	5.2%	W52C (TGG→TGC)	entS →	enterobactin exporter EntS
RA	631,584	T→C	5.0%	M564T (ATG→ACG)	cstA →	carbon starvation protein A
RA	636,068	C→T	5.2%	A168T (GCG→ACG)	ybdN ←	putative PAPS reductase/DUF3440 domain‑containing protein YbdN
RA	636,069	A→G	5.2%	R167R (CGT→CGC)	ybdN ←	putative PAPS reductase/DUF3440 domain‑containing protein YbdN
RA	644,030	A→G	7.3%	intergenic (‑63/+167)	rnk ← / ← rna	nucleoside diphosphate kinase regulator/RNase I
RA	644,034	T→C	7.5%	intergenic (‑67/+163)	rnk ← / ← rna	nucleoside diphosphate kinase regulator/RNase I
RA	644,036	A→T	7.4%	intergenic (‑69/+161)	rnk ← / ← rna	nucleoside diphosphate kinase regulator/RNase I
RA	644,038	G→A	7.4%	intergenic (‑71/+159)	rnk ← / ← rna	nucleoside diphosphate kinase regulator/RNase I
RA	644,042	C→T	7.6%	intergenic (‑75/+155)	rnk ← / ← rna	nucleoside diphosphate kinase regulator/RNase I
RA	650,529	G→A	7.5%	R85R (CGC→CGT)	citD ←	citrate lyase acyl carrier protein
RA	650,532	T→C	7.4%	A84A (GCA→GCG)	citD ←	citrate lyase acyl carrier protein
RA	654,560	A→C	12.2%	intergenic (+18/+23)	dpiA → / ← dcuC	DNA‑binding transcriptional dual regulator DpiA/anaerobic C4‑dicarboxylate transporter DcuC
RA	654,563	C→G	12.0%	intergenic (+21/+20)	dpiA → / ← dcuC	DNA‑binding transcriptional dual regulator DpiA/anaerobic C4‑dicarboxylate transporter DcuC
RA	654,566	G→T	11.9%	intergenic (+24/+17)	dpiA → / ← dcuC	DNA‑binding transcriptional dual regulator DpiA/anaerobic C4‑dicarboxylate transporter DcuC
RA	657,531	T→G	7.2%	intergenic (+30/+24)	cspE → / ← crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel
RA	657,533	A→T	7.1%	intergenic (+32/+22)	cspE → / ← crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel
RA	657,535	C→A	7.4%	intergenic (+34/+20)	cspE → / ← crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel
RA	657,994	T→G	5.0%	intergenic (‑56/‑37)	crcB ← / → ybeM	F(‑) channel/deamidated glutathione amidase, N‑terminal fragment
RA	659,204	C→T	11.8%	intergenic (+54/+47)	tatE → / ← lipA	twin arginine protein translocation system ‑ TatE protein/lipoyl synthase
RA	659,205	A→T	11.1%	intergenic (+55/+46)	tatE → / ← lipA	twin arginine protein translocation system ‑ TatE protein/lipoyl synthase
RA	659,206	A→T	11.8%	intergenic (+56/+45)	tatE → / ← lipA	twin arginine protein translocation system ‑ TatE protein/lipoyl synthase
RA	659,207	A→G	12.2%	intergenic (+57/+44)	tatE → / ← lipA	twin arginine protein translocation system ‑ TatE protein/lipoyl synthase
RA	662,683	A→T	7.0%	intergenic (‑41/+69)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	662,684	G→T	6.6%	intergenic (‑42/+68)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	662,685	A→C	7.0%	intergenic (‑43/+67)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	662,686	A→T	7.0%	intergenic (‑44/+66)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	665,094	G→C	6.8%	P33A (CCT→GCT)	rlpA ←	rare lipoprotein RlpA
RA	681,694	A→G	8.1%	intergenic (+31/+29)	djlC → / ← hscC	co‑chaperone DjlC/chaperone protein HscC
RA	681,699	T→A	7.1%	intergenic (+36/+24)	djlC → / ← hscC	co‑chaperone DjlC/chaperone protein HscC
RA	681,700	T→A	7.7%	intergenic (+37/+23)	djlC → / ← hscC	co‑chaperone DjlC/chaperone protein HscC
RA	681,705	C→T	7.5%	intergenic (+42/+18)	djlC → / ← hscC	co‑chaperone DjlC/chaperone protein HscC
RA	691,390	G→C	6.9%	A132G (GCC→GGC)	ybeX ←	CorC‑HlyC family protein YbeX
RA	691,861	A→T	5.4%	intergenic (‑77/+13)	ybeX ← / ← ybeY	CorC‑HlyC family protein YbeX/endoribonuclease YbeY
RA	696,318	A→G	5.1%	intergenic (+42/+112)	ubiF → / ← glnX	2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase/tRNA‑Gln
RA	696,319	A→C	5.2%	intergenic (+43/+111)	ubiF → / ← glnX	2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase/tRNA‑Gln
RA	696,325	G→T	6.8%	intergenic (+49/+105)	ubiF → / ← glnX	2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase/tRNA‑Gln
RA	696,328	A→C	6.7%	intergenic (+52/+102)	ubiF → / ← glnX	2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase/tRNA‑Gln
RA	696,334	G→T	5.9%	intergenic (+58/+96)	ubiF → / ← glnX	2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase/tRNA‑Gln
RA	696,335	C→T	5.9%	intergenic (+59/+95)	ubiF → / ← glnX	2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase/tRNA‑Gln
RA	699,130	C→T	10.0%	E16E (GAG→GAA) ‡	asnB ←	asparagine synthetase B
RA	699,132	C→G	9.8%	E16Q (GAG→CAG) ‡	asnB ←	asparagine synthetase B
RA	699,134	A→G	9.7%	V15A (GTT→GCT)	asnB ←	asparagine synthetase B
RA	699,439	G→T	7.4%	intergenic (‑262/+135)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	699,440	A→C	7.6%	intergenic (‑263/+134)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	699,446	T→G	7.4%	intergenic (‑269/+128)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	699,447	T→C	7.4%	intergenic (‑270/+127)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	707,912	A→G	5.1%	intergenic (+155/‑422)	glnS → / → chiP	glutamine‑‑tRNA ligase/chitobiose outer membrane channel
RA	707,913	A→C	6.1%	intergenic (+156/‑421)	glnS → / → chiP	glutamine‑‑tRNA ligase/chitobiose outer membrane channel
RA	707,926	G→T	5.0%	intergenic (+169/‑408)	glnS → / → chiP	glutamine‑‑tRNA ligase/chitobiose outer membrane channel
RA	707,927	C→T	5.0%	intergenic (+170/‑407)	glnS → / → chiP	glutamine‑‑tRNA ligase/chitobiose outer membrane channel
RA	710,641	A→C	40.2%	T2T (ACT→ACG)  *29G (TGA→GGA)	fur ← uof ←	DNA‑binding transcriptional dual regulator Fur RyhB‑regulated fur leader peptide
RA	715,222	G→A	7.2%	intergenic (+24/‑190)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	715,225	G→T	8.1%	intergenic (+27/‑187)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	715,226	C→T	7.0%	intergenic (+28/‑186)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	715,227	A→G	6.9%	intergenic (+29/‑185)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	715,228	A→C	6.9%	intergenic (+30/‑184)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	715,231	T→C	6.9%	intergenic (+33/‑181)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	715,749	T→C	9.1%	V113A (GTT→GCT)	ybfP →	lipoprotein YbfP
RA	715,755	A→C	7.6%	Q115P (CAG→CCG) ‡	ybfP →	lipoprotein YbfP
RA	715,756	G→T	6.6%	Q115H (CAG→CAT) ‡	ybfP →	lipoprotein YbfP
RA	715,762	G→A	8.8%	K117K (AAG→AAA)	ybfP →	lipoprotein YbfP
RA	721,004	T→A	11.7%	intergenic (+164/+52)	ybfK → / ← kdpE	uncharacterized protein YbfK/DNA‑binding transcriptional activator KdpE
RA	721,006	T→A	12.4%	intergenic (+166/+50)	ybfK → / ← kdpE	uncharacterized protein YbfK/DNA‑binding transcriptional activator KdpE
RA	721,009	T→A	11.5%	intergenic (+169/+47)	ybfK → / ← kdpE	uncharacterized protein YbfK/DNA‑binding transcriptional activator KdpE
RA	721,011	T→A	11.4%	intergenic (+171/+45)	ybfK → / ← kdpE	uncharacterized protein YbfK/DNA‑binding transcriptional activator KdpE
RA	723,608	T→G	5.3%	A269A (GCA→GCC)	kdpD ←	sensory histidine kinase KdpD
RA	725,276	G→A	7.8%	Y587Y (TAC→TAT)	kdpB ←	K(+) transporting P‑type ATPase subunit KdpB
RA	725,279	T→C	7.9%	K586K (AAA→AAG)	kdpB ←	K(+) transporting P‑type ATPase subunit KdpB
RA	729,376	G→T	10.8%	intergenic (+36/‑207)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	729,377	A→T	11.0%	intergenic (+37/‑206)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	729,378	A→T	10.9%	intergenic (+38/‑205)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	729,379	A→C	11.2%	intergenic (+39/‑204)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	745,091	T→A	5.5%	C283* (TGT→TGA)	pxpC →	5‑oxoprolinase component C
RA	745,092	T→A	5.3%	S284T (TCA→ACA)	pxpC →	5‑oxoprolinase component C
RA	747,895	C→G	6.9%	intergenic (‑126/+26)	abrB ← / ← ybgO	putative regulator/putative fimbrial protein YbgO
RA	747,897	G→C	7.2%	intergenic (‑128/+24)	abrB ← / ← ybgO	putative regulator/putative fimbrial protein YbgO
RA	747,900	G→C	7.9%	intergenic (‑131/+21)	abrB ← / ← ybgO	putative regulator/putative fimbrial protein YbgO
RA	747,902	C→G	7.1%	intergenic (‑133/+19)	abrB ← / ← ybgO	putative regulator/putative fimbrial protein YbgO
RA	749,644	C→A	5.5%	V22L (GTG→TTG)	ybgP ←	putative fimbrial chaperone YbgP
RA	749,645	C→T	5.5%	A21A (GCG→GCA)	ybgP ←	putative fimbrial chaperone YbgP
RA	749,648	A→T	5.7%	A20A (GCT→GCA)	ybgP ←	putative fimbrial chaperone YbgP
RA	749,651	A→G	5.6%	N19N (AAT→AAC) ‡	ybgP ←	putative fimbrial chaperone YbgP
RA	749,652	T→G	5.6%	N19T (AAT→ACT) ‡	ybgP ←	putative fimbrial chaperone YbgP
RA	751,117	T→C	5.5%	P351P (CCA→CCG)	ybgQ ←	putative fimbrial usher protein YbgQ
RA	751,120	C→G	5.8%	Q350H (CAG→CAC) ‡	ybgQ ←	putative fimbrial usher protein YbgQ
RA	751,122	G→C	5.7%	Q350E (CAG→GAG) ‡	ybgQ ←	putative fimbrial usher protein YbgQ
RA	751,124	C→G	5.7%	G349A (GGT→GCT)	ybgQ ←	putative fimbrial usher protein YbgQ
RA	751,127	G→A	5.4%	A348V (GCG→GTG)	ybgQ ←	putative fimbrial usher protein YbgQ
RA	752,065	G→C	6.3%	D35E (GAC→GAG) ‡	ybgQ ←	putative fimbrial usher protein YbgQ
RA	752,066	T→G	5.6%	D35A (GAC→GCC) ‡	ybgQ ←	putative fimbrial usher protein YbgQ
RA	752,067	C→A	6.3%	D35Y (GAC→TAC) ‡	ybgQ ←	putative fimbrial usher protein YbgQ
RA	752,068	G→C	6.0%	R34R (CGC→CGG)	ybgQ ←	putative fimbrial usher protein YbgQ
RA	759,250	G→T	87.5%	R182L (CGC→CTC)	sucA →	subunit of E1(0) component of 2‑oxoglutarate dehydrogenase
RA	765,135	T→C	5.0%	intergenic (+86/+18)	sucD → / ← mngR	succinyl‑CoA synthetase subunit alpha/DNA‑binding transcriptional repressor MngR
RA	768,921	C→T	5.3%	T315M (ACG→ATG)	mngB →	alpha‑mannosidase
RA	770,679	G→T	5.7%	intergenic (+68/‑779)	mngB → / → cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I
RA	770,682	A→C	5.7%	intergenic (+71/‑776)	mngB → / → cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I
RA	770,805	G→A	6.7%	intergenic (+194/‑653)	mngB → / → cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I
RA	770,810	T→C	7.1%	intergenic (+199/‑648)	mngB → / → cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I
RA	773,138	G→A	8.3%	G33S (GGC→AGC)	cydB →	cytochrome bd‑I ubiquinol oxidase subunit II
RA	773,145	T→C	7.7%	L35P (CTC→CCC)	cydB →	cytochrome bd‑I ubiquinol oxidase subunit II
RA	775,613	T→C	5.3%	I154T (ATC→ACC)	tolQ →	Tol‑Pal system protein TolQ
RA	784,012	T→A	6.5%	Q271L (CAG→CTG)	zitB ←	Zn(2(+))/Cd(2(+))/Ni(2(+))/Cu(2(+)) exporter
RA	788,385	G→T	6.8%	T151T (ACC→ACA) ‡	galM ←	galactose‑1‑epimerase
RA	788,387	T→A	6.2%	T151S (ACC→TCC) ‡	galM ←	galactose‑1‑epimerase
RA	788,389	A→C	7.1%	L150R (CTG→CGG)	galM ←	galactose‑1‑epimerase
RA	794,939	T→C	6.5%	intergenic (+17/‑150)	acrZ → / → modA	multidrug efflux pump accessory protein AcrZ/molybdate ABC transporter periplasmic binding protein
RA	794,942	G→A	6.5%	intergenic (+20/‑147)	acrZ → / → modA	multidrug efflux pump accessory protein AcrZ/molybdate ABC transporter periplasmic binding protein
RA	794,943	T→G	6.5%	intergenic (+21/‑146)	acrZ → / → modA	multidrug efflux pump accessory protein AcrZ/molybdate ABC transporter periplasmic binding protein
RA	801,861	G→C	6.8%	intergenic (+50/‑26)	ybhH → / → ybhI	putative isomerase YbhH/putative tricarboxylate transporter
RA	805,312	G→T	11.7%	E604* (GAG→TAG) ‡	ybhJ →	putative hydratase YbhJ
RA	805,313	A→C	12.0%	E604A (GAG→GCG) ‡	ybhJ →	putative hydratase YbhJ
RA	811,157	C→T	5.1%	A259A (GCC→GCT)	bioF →	8‑amino‑7‑oxononanoate synthase
RA	824,572	T→A	8.3%	intergenic (‑75/‑58)	ybhP ← / → ybhQ	endonuclease/exonuclease/phosphatase domain‑containing protein YbhP/putative inner membrane protein
RA	824,573	T→A	6.9%	intergenic (‑76/‑57)	ybhP ← / → ybhQ	endonuclease/exonuclease/phosphatase domain‑containing protein YbhP/putative inner membrane protein
RA	824,955	T→G	8.2%	I109S (ATC→AGC)	ybhQ →	putative inner membrane protein
RA	828,746	T→C	5.2%	H79R (CAC→CGC)	ybhF ←	putative ABC exporter ATP binding subunit
RA	828,749	A→T	5.2%	L78Q (CTG→CAG)	ybhF ←	putative ABC exporter ATP binding subunit
RA	837,635	G→A	5.4%	intergenic (+199/+30)	hcxB → / ← ybiJ	hydroxycarboxylate dehydrogenase B/DUF1471 domain‑containing protein YbiJ
RA	845,575	G→A	6.4%	intergenic (‑95/+166)	ybiO ← / ← glnQ	moderate conductance mechanosensitive channel/L‑glutamine ABC transporter ATP binding subunit
RA	845,576	G→C	6.3%	intergenic (‑96/+165)	ybiO ← / ← glnQ	moderate conductance mechanosensitive channel/L‑glutamine ABC transporter ATP binding subunit
RA	845,577	G→C	6.3%	intergenic (‑97/+164)	ybiO ← / ← glnQ	moderate conductance mechanosensitive channel/L‑glutamine ABC transporter ATP binding subunit
RA	845,578	T→C	6.3%	intergenic (‑98/+163)	ybiO ← / ← glnQ	moderate conductance mechanosensitive channel/L‑glutamine ABC transporter ATP binding subunit
RA	854,790	T→C	10.2%	intergenic (+25/+34)	ybiR → / ← ldtB	putative transporter YbiR/L,D‑transpeptidase YbiS
RA	854,792	A→C	9.9%	intergenic (+27/+32)	ybiR → / ← ldtB	putative transporter YbiR/L,D‑transpeptidase YbiS
RA	854,793	T→A	8.9%	intergenic (+28/+31)	ybiR → / ← ldtB	putative transporter YbiR/L,D‑transpeptidase YbiS
RA	854,794	G→T	8.7%	intergenic (+29/+30)	ybiR → / ← ldtB	putative transporter YbiR/L,D‑transpeptidase YbiS
RA	854,796	G→A	8.8%	intergenic (+31/+28)	ybiR → / ← ldtB	putative transporter YbiR/L,D‑transpeptidase YbiS
RA	857,576	T→C	12.1%	intergenic (+21/+220)	ybiT → / ← ybiU	ABC transporter ATP‑binding protein YbiT/DUF1479 domain‑containing protein YbiU
RA	857,578	C→G	12.0%	intergenic (+23/+218)	ybiT → / ← ybiU	ABC transporter ATP‑binding protein YbiT/DUF1479 domain‑containing protein YbiU
RA	857,580	G→A	11.9%	intergenic (+25/+216)	ybiT → / ← ybiU	ABC transporter ATP‑binding protein YbiT/DUF1479 domain‑containing protein YbiU
RA	858,420	A→C	8.9%	L214L (CTT→CTG) ‡	ybiU ←	DUF1479 domain‑containing protein YbiU
RA	858,421	A→T	9.0%	L214H (CTT→CAT) ‡	ybiU ←	DUF1479 domain‑containing protein YbiU
RA	858,424	A→T	8.6%	L213Q (CTG→CAG) ‡	ybiU ←	DUF1479 domain‑containing protein YbiU
RA	858,425	G→T	8.3%	L213M (CTG→ATG) ‡	ybiU ←	DUF1479 domain‑containing protein YbiU
RA	860,151	A→G	5.8%	intergenic (‑123/+23)	ybiV ← / ← ybiW	sugar phosphatase/putative pyruvate formate lyase
RA	860,154	A→T	5.8%	intergenic (‑126/+20)	ybiV ← / ← ybiW	sugar phosphatase/putative pyruvate formate lyase
RA	860,157	C→T	5.6%	intergenic (‑129/+17)	ybiV ← / ← ybiW	sugar phosphatase/putative pyruvate formate lyase
RA	869,724	A→C	6.6%	N105T (AAC→ACC)	gsiB →	glutathione ABC transporter periplasmic binding protein
RA	871,069	G→T	5.3%	A35S (GCG→TCG)	gsiC →	glutathione ABC transporter membrane subunit GsiC
RA	886,189	A→G	6.0%	V384A (GTC→GCC)	ybjJ ←	inner membrane protein YbjJ
RA	886,191	A→T	6.0%	I383I (ATT→ATA)	ybjJ ←	inner membrane protein YbjJ
RA	886,194	A→T	6.2%	A382A (GCT→GCA) ‡	ybjJ ←	inner membrane protein YbjJ
RA	886,196	C→T	6.1%	A382T (GCT→ACT) ‡	ybjJ ←	inner membrane protein YbjJ
RA	887,392	T→A	12.6%	intergenic (‑53/‑31)	ybjJ ← / → rcdA	inner membrane protein YbjJ/DNA‑binding transcriptional regulator RcdA
RA	887,393	T→A	12.6%	intergenic (‑54/‑30)	ybjJ ← / → rcdA	inner membrane protein YbjJ/DNA‑binding transcriptional regulator RcdA
RA	892,455	G→C	6.2%	V163V (GTG→GTC)	rimK →	ribosomal protein S6 modification protein
RA	892,457	T→A	6.7%	I164N (ATT→AAT)	rimK →	ribosomal protein S6 modification protein
RA	892,459	G→C	6.4%	D165H (GAC→CAC)	rimK →	ribosomal protein S6 modification protein
RA	897,968:1	+A	6.9%	intergenic (+39/‑21)	potI → / → ybjO	putrescine ABC transporter membrane subunit PotI/putative inner membrane protein
RA	897,973	Δ1 bp	6.2%	intergenic (+44/‑16)	potI → / → ybjO	putrescine ABC transporter membrane subunit PotI/putative inner membrane protein
RA	900,707	T→C	9.3%	intergenic (‑132/+159)	artJ ← / ← artM	L‑arginine ABC transporter periplasmic binding protein/L‑arginine ABC transporter membrane subunit ArtM
RA	900,708	T→C	9.3%	intergenic (‑133/+158)	artJ ← / ← artM	L‑arginine ABC transporter periplasmic binding protein/L‑arginine ABC transporter membrane subunit ArtM
RA	900,710	G→C	9.1%	intergenic (‑135/+156)	artJ ← / ← artM	L‑arginine ABC transporter periplasmic binding protein/L‑arginine ABC transporter membrane subunit ArtM
RA	900,712	G→A	9.5%	intergenic (‑137/+154)	artJ ← / ← artM	L‑arginine ABC transporter periplasmic binding protein/L‑arginine ABC transporter membrane subunit ArtM
RA	900,713	G→A	8.7%	intergenic (‑138/+153)	artJ ← / ← artM	L‑arginine ABC transporter periplasmic binding protein/L‑arginine ABC transporter membrane subunit ArtM
RA	922,314:1	+C	9.9%	intergenic (+21/+52)	macB → / ← cspD	ABC‑type tripartite efflux pump ATP binding/membrane subunit/DNA replication inhibitor
RA	926,168	C→T	8.9%	intergenic (‑197/+57)	serW ← / ← infA	tRNA‑Ser/translation initiation factor IF‑1
RA	926,174	A→T	7.3%	intergenic (‑203/+51)	serW ← / ← infA	tRNA‑Ser/translation initiation factor IF‑1
RA	926,180	A→G	7.2%	intergenic (‑209/+45)	serW ← / ← infA	tRNA‑Ser/translation initiation factor IF‑1
RA	928,302	C→A	5.5%	T298T (ACG→ACT)	cydC ←	glutathione/L‑cysteine ABC exporter subunit CydC
RA	928,305	T→A	5.5%	V297V (GTA→GTT)	cydC ←	glutathione/L‑cysteine ABC exporter subunit CydC
RA	928,308	T→G	5.1%	P296P (CCA→CCC)	cydC ←	glutathione/L‑cysteine ABC exporter subunit CydC
RA	933,155	T→C	5.8%	intergenic (+66/‑69)	lrp → / → ftsK	DNA‑binding transcriptional dual regulator Lrp/cell division DNA translocase FtsK
RA	933,156	G→A	6.0%	intergenic (+67/‑68)	lrp → / → ftsK	DNA‑binding transcriptional dual regulator Lrp/cell division DNA translocase FtsK
RA	933,159	G→T	5.8%	intergenic (+70/‑65)	lrp → / → ftsK	DNA‑binding transcriptional dual regulator Lrp/cell division DNA translocase FtsK
RA	933,162	A→C	5.9%	intergenic (+73/‑62)	lrp → / → ftsK	DNA‑binding transcriptional dual regulator Lrp/cell division DNA translocase FtsK
RA	933,165	T→C	6.1%	intergenic (+76/‑59)	lrp → / → ftsK	DNA‑binding transcriptional dual regulator Lrp/cell division DNA translocase FtsK
RA	933,166	G→A	6.2%	intergenic (+77/‑58)	lrp → / → ftsK	DNA‑binding transcriptional dual regulator Lrp/cell division DNA translocase FtsK
RA	939,037	T→A	7.1%	A348A (GCT→GCA)	rarA →	recombination factor
RA	939,040	C→G	7.3%	V349V (GTC→GTG)	rarA →	recombination factor
RA	939,043	C→G	7.2%	Y350* (TAC→TAG)	rarA →	recombination factor
RA	939,046	T→A	6.7%	T351T (ACT→ACA)	rarA →	recombination factor
RA	940,751	T→C	7.0%	intergenic (+31/‑208)	serS → / → dmsA	serine‑‑tRNA ligase/dimethyl sulfoxide reductase subunit A
RA	940,754	G→A	7.1%	intergenic (+34/‑205)	serS → / → dmsA	serine‑‑tRNA ligase/dimethyl sulfoxide reductase subunit A
RA	950,313	C→T	6.2%	intergenic (+55/+27)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase YcaK/pyruvate formate‑lyase activating enzyme
RA	950,314	A→T	6.2%	intergenic (+56/+26)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase YcaK/pyruvate formate‑lyase activating enzyme
RA	950,317	A→T	6.6%	intergenic (+59/+23)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase YcaK/pyruvate formate‑lyase activating enzyme
RA	950,318	A→G	6.0%	intergenic (+60/+22)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase YcaK/pyruvate formate‑lyase activating enzyme
RA	953,720	A→T	6.1%	N249K (AAT→AAA)	focA ←	formate channel FocA
RA	958,769	C→G	5.9%	intergenic (+28/‑43)	serC → / → aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	958,771	A→T	5.8%	intergenic (+30/‑41)	serC → / → aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	958,773	C→G	5.8%	intergenic (+32/‑39)	serC → / → aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	961,154	A→T	7.1%	intergenic (+126/‑47)	ycaL → / → cmk	periplasmic protease YcaL/cytidylate kinase
RA	966,301	T→C	5.9%	V661A (GTA→GCA)	ycaI →	conserved inner membrane protein YcaI
RA	968,409	T→A	5.0%	L15Q (CTA→CAA)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	968,412	T→A	5.2%	L16* (TTG→TAG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	968,415	T→C	5.2%	L17P (CTG→CCG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	975,700	G→T	6.4%	D27Y (GAC→TAC) ‡	mukE →	chromosome partitioning protein MukE
RA	975,701	A→C	6.9%	D27A (GAC→GCC) ‡	mukE →	chromosome partitioning protein MukE
RA	983,560	T→C	5.0%	G162G (GGT→GGC)	ycbK →	DUF882 domain‑containing protein YcbK
RA	987,418	A→T	10.1%	intergenic (‑436/+167)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,420	A→C	10.2%	intergenic (‑438/+165)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,421	A→T	10.2%	intergenic (‑439/+164)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,422	G→T	10.9%	intergenic (‑440/+163)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,424	A→T	10.1%	intergenic (‑442/+161)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,560	G→C	11.3%	intergenic (‑578/+25)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,561	G→C	11.7%	intergenic (‑579/+24)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	993,254	A→G	8.7%	intergenic (+20/+23)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	993,255	A→C	9.5%	intergenic (+21/+22)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	993,258	G→T	8.5%	intergenic (+24/+19)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	993,259	C→T	8.6%	intergenic (+25/+18)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	1,002,700	G→T	5.8%	V298V (GTG→GTT)	elfG →	putative fimbrial‑like adhesin protein
RA	1,011,926	G→A	7.7%	intergenic (+55/‑75)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,930	T→C	6.6%	intergenic (+59/‑71)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,931	G→C	6.7%	intergenic (+60/‑70)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,932	G→A	6.7%	intergenic (+61/‑69)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,936	T→C	6.8%	intergenic (+65/‑65)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,015,912	T→A	6.1%	intergenic (+30/+40)	rmf → / ← fabA	ribosome modulation factor/beta‑hydroxyacyl‑acyl carrier protein dehydratase/isomerase
RA	1,018,254	C→A	5.7%	D16Y (GAT→TAT)	ycbZ ←	putative ATP‑dependent protease YcbZ
RA	1,018,256	G→C	5.2%	T15S (ACC→AGC)	ycbZ ←	putative ATP‑dependent protease YcbZ
RA	1,019,715	G→C	9.9%	D113E (GAC→GAG)	ompA ←	outer membrane porin A
RA	1,021,696	C→T	5.2%	R187C (CGC→TGC)	sxy →	transcriptional coactivator for CRP
RA	1,021,911:1	+A	6.2%	coding (1973/2154 nt)	yccS ←	putative transporter YccS
RA	1,021,913	T→A	5.6%	E657D (GAA→GAT)	yccS ←	putative transporter YccS
RA	1,021,920	G→A	5.9%	A655V (GCT→GTT)	yccS ←	putative transporter YccS
RA	1,021,922	A→C	6.0%	P654P (CCT→CCG) ‡	yccS ←	putative transporter YccS
RA	1,021,923	G→T	6.0%	P654H (CCT→CAT) ‡	yccS ←	putative transporter YccS
RA	1,021,925	T→C	5.6%	Q653Q (CAA→CAG)	yccS ←	putative transporter YccS
RA	1,021,932	T→A	5.7%	H651L (CAT→CTT)	yccS ←	putative transporter YccS
RA	1,021,934	Δ1 bp	5.5%	coding (1950/2154 nt)	yccS ←	putative transporter YccS
RA	1,030,720	C→T	8.1%	intergenic (‑52/+39)	tusE ← / ← yccA	sulfur transfer protein TusE/modulator of FtsH protease
RA	1,030,724	A→T	8.2%	intergenic (‑56/+35)	tusE ← / ← yccA	sulfur transfer protein TusE/modulator of FtsH protease
RA	1,030,726	A→T	8.1%	intergenic (‑58/+33)	tusE ← / ← yccA	sulfur transfer protein TusE/modulator of FtsH protease
RA	1,030,728	A→T	8.1%	intergenic (‑60/+31)	tusE ← / ← yccA	sulfur transfer protein TusE/modulator of FtsH protease
RA	1,030,732	A→G	8.2%	intergenic (‑64/+27)	tusE ← / ← yccA	sulfur transfer protein TusE/modulator of FtsH protease
RA	1,036,090	G→A	5.8%	A107A (GCG→GCA)	hyaD →	putative hydrogenase 1 maturation protease HyaD
RA	1,036,094	A→G	6.0%	I109V (ATC→GTC)	hyaD →	putative hydrogenase 1 maturation protease HyaD
RA	1,036,103	C→T	6.3%	H112Y (CAT→TAT)	hyaD →	putative hydrogenase 1 maturation protease HyaD
RA	1,036,107	T→C	6.0%	L113P (CTG→CCG)	hyaD →	putative hydrogenase 1 maturation protease HyaD
RA	1,041,937	T→G	5.4%	intergenic (+22/+93)	appA → / ← etk	periplasmic phosphoanhydride phosphatase/multiple inositol‑polyphosphate phosphatase/protein‑tyrosine kinase Etk
RA	1,041,940	C→A	6.1%	intergenic (+25/+90)	appA → / ← etk	periplasmic phosphoanhydride phosphatase/multiple inositol‑polyphosphate phosphatase/protein‑tyrosine kinase Etk
RA	1,069,747	C→T	6.6%	Q31Q (CAG→CAA)	rutG ←	pyrimidine:H(+) symporter
RA	1,069,750	A→C	6.4%	A30A (GCT→GCG) ‡	rutG ←	pyrimidine:H(+) symporter
RA	1,069,751	G→T	7.0%	A30D (GCT→GAT) ‡	rutG ←	pyrimidine:H(+) symporter
RA	1,069,754	A→G	6.5%	F29S (TTT→TCT)	rutG ←	pyrimidine:H(+) symporter
RA	1,074,894	G→T	8.1%	intergenic (+14/+26)	rutR → / ← putA	DNA‑binding transcriptional dual regulator RutR/fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA
RA	1,102,195	T→A	7.0%	Q116L (CAG→CTG)	csgE ←	curli transport specificity factor
RA	1,102,199	T→A	7.1%	N115Y (AAT→TAT)	csgE ←	curli transport specificity factor
RA	1,102,200	T→A	8.2%	I114I (ATA→ATT)	csgE ←	curli transport specificity factor
RA	1,102,204	T→A	8.2%	Q113L (CAG→CTG)	csgE ←	curli transport specificity factor
RA	1,107,468	A→G	5.1%	T372A (ACC→GCC) ‡	clsC →	cardiolipin synthase C
RA	1,107,469	C→G	5.0%	T372S (ACC→AGC) ‡	clsC →	cardiolipin synthase C
RA	1,107,470	C→T	5.0%	T372T (ACC→ACT) ‡	clsC →	cardiolipin synthase C
RA	1,113,544	G→A	6.0%	intergenic (+138/‑35)	opgH → / → yceK	osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK
RA	1,113,546	T→A	5.7%	intergenic (+140/‑33)	opgH → / → yceK	osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK
RA	1,113,548	T→C	5.9%	intergenic (+142/‑31)	opgH → / → yceK	osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK
RA	1,118,637	T→G	6.5%	Q137P (CAG→CCG)	yceJ ←	putative cytochrome b561
RA	1,125,734	G→C	6.7%	G58A (GGC→GCC)	rimJ →	ribosomal‑protein‑S5‑alanine N‑acetyltransferase
RA	1,125,740	A→C	5.8%	Q60P (CAG→CCG) ‡	rimJ →	ribosomal‑protein‑S5‑alanine N‑acetyltransferase
RA	1,125,741	G→T	5.8%	Q60H (CAG→CAT) ‡	rimJ →	ribosomal‑protein‑S5‑alanine N‑acetyltransferase
RA	1,127,799	C→A	9.6%	intergenic (+70/‑40)	yceM → / → murJ	putative oxidoreductase YceM/putative lipid II flippase MurJ
RA	1,127,800	T→A	9.7%	intergenic (+71/‑39)	yceM → / → murJ	putative oxidoreductase YceM/putative lipid II flippase MurJ
RA	1,127,801	T→G	9.5%	intergenic (+72/‑38)	yceM → / → murJ	putative oxidoreductase YceM/putative lipid II flippase MurJ
RA	1,129,394	G→C	12.1%	intergenic (+20/+20)	murJ → / ← flgN	putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN
RA	1,131,310	A→T	5.2%	N98I (AAT→ATT)	flgB →	flagellar basal‑body rod protein FlgB
RA	1,133,864	A→T	7.6%	V21V (GTA→GTT)	flgF →	flagellar basal‑body rod protein FlgF
RA	1,134,661	A→G	6.5%	intergenic (+104/‑68)	flgF → / → flgG	flagellar basal‑body rod protein FlgF/flagellar basal‑body rod protein FlgG
RA	1,134,662	A→C	6.4%	intergenic (+105/‑67)	flgF → / → flgG	flagellar basal‑body rod protein FlgF/flagellar basal‑body rod protein FlgG
RA	1,134,668	T→A	6.8%	intergenic (+111/‑61)	flgF → / → flgG	flagellar basal‑body rod protein FlgF/flagellar basal‑body rod protein FlgG
RA	1,134,669	T→A	6.8%	intergenic (+112/‑60)	flgF → / → flgG	flagellar basal‑body rod protein FlgF/flagellar basal‑body rod protein FlgG
RA	1,134,675	G→T	6.9%	intergenic (+118/‑54)	flgF → / → flgG	flagellar basal‑body rod protein FlgF/flagellar basal‑body rod protein FlgG
RA	1,134,676	C→T	6.8%	intergenic (+119/‑53)	flgF → / → flgG	flagellar basal‑body rod protein FlgF/flagellar basal‑body rod protein FlgG
RA	1,136,026	G→T	5.9%	V155L (GTA→TTA) ‡	flgH →	flagellar L‑ring protein
RA	1,136,027	T→A	6.0%	V155E (GTA→GAA) ‡	flgH →	flagellar L‑ring protein
RA	1,136,028	A→C	6.0%	V155V (GTA→GTC) ‡	flgH →	flagellar L‑ring protein
RA	1,138,419	G→C	6.1%	A14A (GCG→GCC)	flgK →	flagellar hook‑filament junction protein 1
RA	1,138,423	C→T	6.1%	Q16* (CAG→TAG) ‡	flgK →	flagellar hook‑filament junction protein 1
RA	1,138,424	A→G	6.1%	Q16R (CAG→CGG) ‡	flgK →	flagellar hook‑filament junction protein 1
RA	1,138,428	G→C	6.3%	A17A (GCG→GCC)	flgK →	flagellar hook‑filament junction protein 1
RA	1,139,787	C→G	7.0%	D470E (GAC→GAG)	flgK →	flagellar hook‑filament junction protein 1
RA	1,139,790	T→A	6.6%	A471A (GCT→GCA)	flgK →	flagellar hook‑filament junction protein 1
RA	1,139,793	T→A	6.9%	Y472* (TAT→TAA)	flgK →	flagellar hook‑filament junction protein 1
RA	1,139,796	C→G	7.0%	A473A (GCC→GCG)	flgK →	flagellar hook‑filament junction protein 1
RA	1,141,148	C→T	9.8%	intergenic (+162/+34)	flgL → / ← rne	flagellar hook‑filament junction protein 2/ribonuclease E
RA	1,141,150	G→A	9.5%	intergenic (+164/+32)	flgL → / ← rne	flagellar hook‑filament junction protein 2/ribonuclease E
RA	1,141,151	T→C	9.5%	intergenic (+165/+31)	flgL → / ← rne	flagellar hook‑filament junction protein 2/ribonuclease E
RA	1,141,153	A→G	9.9%	intergenic (+167/+29)	flgL → / ← rne	flagellar hook‑filament junction protein 2/ribonuclease E
RA	1,141,654	G→C	7.1%	P905R (CCG→CGG)	rne ←	ribonuclease E
RA	1,141,656	T→A	6.5%	E904D (GAA→GAT) ‡	rne ←	ribonuclease E
RA	1,141,657	T→A	6.7%	E904V (GAA→GTA) ‡	rne ←	ribonuclease E
RA	1,141,659	G→C	7.3%	A903A (GCC→GCG)	rne ←	ribonuclease E
RA	1,141,666	T→G	5.6%	Q901P (CAG→CCG)	rne ←	ribonuclease E
RA	1,145,939	A→G	5.0%	intergenic (+40/+72)	rluC → / ← yceF	23S rRNA pseudouridine(955/2504/2580) synthase/m(7)GTP pyrophosphatase
RA	1,145,940	A→C	5.1%	intergenic (+41/+71)	rluC → / ← yceF	23S rRNA pseudouridine(955/2504/2580) synthase/m(7)GTP pyrophosphatase
RA	1,145,953	G→T	5.5%	intergenic (+54/+58)	rluC → / ← yceF	23S rRNA pseudouridine(955/2504/2580) synthase/m(7)GTP pyrophosphatase
RA	1,145,954	C→T	5.5%	intergenic (+55/+57)	rluC → / ← yceF	23S rRNA pseudouridine(955/2504/2580) synthase/m(7)GTP pyrophosphatase
RA	1,146,736	A→G	12.9%	noncoding (148/169 nt)	sraB →	small RNA SraB
RA	1,146,739	A→T	10.7%	noncoding (151/169 nt)	sraB →	small RNA SraB
RA	1,146,740	C→G	10.9%	noncoding (152/169 nt)	sraB →	small RNA SraB
RA	1,146,741	A→T	10.7%	noncoding (153/169 nt)	sraB →	small RNA SraB
RA	1,146,744	C→T	10.3%	noncoding (156/169 nt)	sraB →	small RNA SraB
RA	1,147,980	G→T	9.5%	K120N (AAG→AAT)	plsX →	putative phosphate acyltransferase
RA	1,149,985	A→C	8.8%	A86A (GCA→GCC)	fabD →	[acyl‑carrier‑protein] S‑malonyltransferase
RA	1,149,988	G→C	9.2%	M87I (ATG→ATC)	fabD →	[acyl‑carrier‑protein] S‑malonyltransferase
RA	1,149,991	G→T	9.2%	M88I (ATG→ATT)	fabD →	[acyl‑carrier‑protein] S‑malonyltransferase
RA	1,150,621	C→G	7.4%	N298K (AAC→AAG)	fabD →	[acyl‑carrier‑protein] S‑malonyltransferase
RA	1,150,623	A→T	7.4%	E299V (GAA→GTA) ‡	fabD →	[acyl‑carrier‑protein] S‑malonyltransferase
RA	1,150,624	A→T	7.3%	E299D (GAA→GAT) ‡	fabD →	[acyl‑carrier‑protein] S‑malonyltransferase
RA	1,150,626	C→G	7.5%	P300R (CCT→CGT)	fabD →	[acyl‑carrier‑protein] S‑malonyltransferase
RA	1,155,322	G→C	5.3%	D67H (GAT→CAT)	tmk →	hypothetical protein
RA	1,157,629	G→C	6.6%	intergenic (+55/‑240)	ycfH → / → ptsG	putative metal‑dependent hydrolase YcfH/glucose‑specific PTS enzyme IIBC component
RA	1,157,632	A→T	6.4%	intergenic (+58/‑237)	ycfH → / → ptsG	putative metal‑dependent hydrolase YcfH/glucose‑specific PTS enzyme IIBC component
RA	1,157,633	A→T	6.4%	intergenic (+59/‑236)	ycfH → / → ptsG	putative metal‑dependent hydrolase YcfH/glucose‑specific PTS enzyme IIBC component
RA	1,157,636	G→C	7.6%	intergenic (+62/‑233)	ycfH → / → ptsG	putative metal‑dependent hydrolase YcfH/glucose‑specific PTS enzyme IIBC component
RA	1,158,513	C→A	8.2%	N215K (AAC→AAA)	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,515	T→G	8.2%	V216G (GTA→GGA) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,516	A→T	8.1%	V216V (GTA→GTT) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,517	C→A	8.2%	P217T (CCT→ACT) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,519	T→G	8.4%	P217P (CCT→CCG) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,159,335	G→T	8.7%	intergenic (+33/+27)	ptsG → / ← fhuE	glucose‑specific PTS enzyme IIBC component/ferric coprogen/ferric rhodotorulic acid outer membrane transporter
RA	1,159,336	A→C	9.0%	intergenic (+34/+26)	ptsG → / ← fhuE	glucose‑specific PTS enzyme IIBC component/ferric coprogen/ferric rhodotorulic acid outer membrane transporter
RA	1,168,996	C→T	5.1%	intergenic (‑164/‑77)	comR ← / → bhsA	DNA‑binding transcriptional repressor ComR/DUF1471 domain‑containing multiple stress resistance outer membrane protein BhsA
RA	1,174,077	G→A	12.2%	intergenic (‑113/+15)	mfd ← / ← ycfT	transcription‑repair coupling factor/inner membrane protein YcfT
RA	1,174,080	T→C	11.4%	intergenic (‑116/+12)	mfd ← / ← ycfT	transcription‑repair coupling factor/inner membrane protein YcfT
RA	1,181,760	A→G	6.8%	intergenic (‑35/+23)	ymfA ← / ← potD	putative inner membrane protein/spermidine preferential ABC transporter periplasmic binding protein
RA	1,181,761	A→G	6.9%	intergenic (‑36/+22)	ymfA ← / ← potD	putative inner membrane protein/spermidine preferential ABC transporter periplasmic binding protein
RA	1,181,764	C→T	7.0%	intergenic (‑39/+19)	ymfA ← / ← potD	putative inner membrane protein/spermidine preferential ABC transporter periplasmic binding protein
RA	1,181,765	C→T	6.9%	intergenic (‑40/+18)	ymfA ← / ← potD	putative inner membrane protein/spermidine preferential ABC transporter periplasmic binding protein
RA	1,186,030	C→G	5.6%	P63A (CCG→GCG) ‡	pepT →	peptidase T
RA	1,186,032	G→C	5.6%	P63P (CCG→CCC) ‡	pepT →	peptidase T
RA	1,186,034	C→G	5.5%	A64G (GCT→GGT)	pepT →	peptidase T
RA	1,192,685	A→C	5.7%	R363R (CGT→CGG)	mnmA ←	tRNA‑specific 2‑thiouridylase
RA	1,194,645:1	+A	7.7%	coding (307/654 nt)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,194,650	G→A	7.7%	P101L (CCG→CTG)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,194,653	T→C	7.7%	Q100R (CAG→CGG)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,194,657	Δ1 bp	7.7%	coding (295/654 nt)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,196,803	A→C	7.3%	intergenic (+430/+64)	icd → / ← ymfD	isocitrate dehydrogenase/e14 prophage; putative SAM‑dependent methyltransferase
RA	1,196,804	G→T	6.1%	intergenic (+431/+63)	icd → / ← ymfD	isocitrate dehydrogenase/e14 prophage; putative SAM‑dependent methyltransferase
RA	1,200,910	T→A	6.0%	Q41H (CAA→CAT)	xisE ←	e14 prophage; putative excisionase
RA	1,200,913	T→A	6.1%	K40N (AAA→AAT) ‡	xisE ←	e14 prophage; putative excisionase
RA	1,200,914	T→A	6.1%	K40I (AAA→ATA) ‡	xisE ←	e14 prophage; putative excisionase
RA	1,200,915	T→A	6.0%	K40* (AAA→TAA) ‡	xisE ←	e14 prophage; putative excisionase
RA	1,200,918	T→A	6.1%	M39L (ATG→TTG)	xisE ←	e14 prophage; putative excisionase
RA	1,202,274	G→A	6.6%	Y220Y (TAC→TAT)	ymfK ←	e14 prophage; putative repressor protein YmfK
RA	1,202,957	G→T	5.9%	intergenic (‑24/‑67)	ymfK ← / → ymfT	e14 prophage; putative repressor protein YmfK/e14 prophage; putative DNA‑binding transcriptional regulator YmfT
RA	1,202,959	T→A	5.8%	intergenic (‑26/‑65)	ymfK ← / → ymfT	e14 prophage; putative repressor protein YmfK/e14 prophage; putative DNA‑binding transcriptional regulator YmfT
RA	1,202,961	A→C	5.7%	intergenic (‑28/‑63)	ymfK ← / → ymfT	e14 prophage; putative repressor protein YmfK/e14 prophage; putative DNA‑binding transcriptional regulator YmfT
RA	1,205,327	C→T	6.0%	D386D (GAC→GAT)  pseudogene (927/1137 nt)	ymfN → aaaE →	e14 prophage; chimeric replication protein/phage terminase YmfN phage terminase
RA	1,205,330	C→G	6.0%	G387G (GGC→GGG)  pseudogene (930/1137 nt)	ymfN → aaaE →	e14 prophage; chimeric replication protein/phage terminase YmfN phage terminase
RA	1,205,332	A→T	6.0%	N388I (AAT→ATT)  pseudogene (932/1137 nt)	ymfN → aaaE →	e14 prophage; chimeric replication protein/phage terminase YmfN phage terminase
RA	1,205,334	C→G	6.0%	P389A (CCC→GCC)  pseudogene (934/1137 nt)	ymfN → aaaE →	e14 prophage; chimeric replication protein/phage terminase YmfN phage terminase
RA	1,205,337	A→G	5.7%	I390V (ATC→GTC)  pseudogene (937/1137 nt)	ymfN → aaaE →	e14 prophage; chimeric replication protein/phage terminase YmfN phage terminase
RA	1,205,787	A→T	7.5%	A19A (GCA→GCT)	beeE →	e14 prophage; putative protein BeeE
RA	1,205,788	G→C	6.4%	E20Q (GAG→CAG) ‡	beeE →	e14 prophage; putative protein BeeE
RA	1,205,789	A→T	7.2%	E20V (GAG→GTG) ‡	beeE →	e14 prophage; putative protein BeeE
RA	1,206,629	C→G	6.1%	pseudogene (499/792 nt)	jayE →	e14 prophage; putative protein JayE
RA	1,208,925	A→C	9.2%	S65S (TCT→TCG) ‡	tfaE ←	e14 prophage; putative tail fiber assembly protein TfaE
RA	1,208,927	A→T	9.2%	S65T (TCT→ACT) ‡	tfaE ←	e14 prophage; putative tail fiber assembly protein TfaE
RA	1,208,928	A→T	8.6%	R64R (CGT→CGA) ‡	tfaE ←	e14 prophage; putative tail fiber assembly protein TfaE
RA	1,208,930	G→T	8.8%	R64S (CGT→AGT) ‡	tfaE ←	e14 prophage; putative tail fiber assembly protein TfaE
RA	1,211,610	A→G	16.9%	intergenic (+33/+70)	icdC → / ← iraM	protein IcdC/anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis
RA	1,211,612	A→T	16.9%	intergenic (+35/+68)	icdC → / ← iraM	protein IcdC/anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis
RA	1,211,614	C→T	16.3%	intergenic (+37/+66)	icdC → / ← iraM	protein IcdC/anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis
RA	1,212,470	A→C	7.7%	intergenic (‑166/+70)	ymgK ← / ← ymgL	protein YmgK/protein YmgL
RA	1,212,475	T→C	7.8%	intergenic (‑171/+65)	ymgK ← / ← ymgL	protein YmgK/protein YmgL
RA	1,212,476	G→C	7.6%	intergenic (‑172/+64)	ymgK ← / ← ymgL	protein YmgK/protein YmgL
RA	1,212,477	G→A	7.7%	intergenic (‑173/+63)	ymgK ← / ← ymgL	protein YmgK/protein YmgL
RA	1,212,482	G→T	7.5%	intergenic (‑178/+58)	ymgK ← / ← ymgL	protein YmgK/protein YmgL
RA	1,214,511	G→C	6.2%	P322R (CCT→CGT)	bluF ←	blue light‑responsive regulator of BluR
RA	1,214,515	G→T	5.9%	Q321K (CAG→AAG)	bluF ←	blue light‑responsive regulator of BluR
RA	1,214,516	G→C	6.7%	F320L (TTC→TTG) ‡	bluF ←	blue light‑responsive regulator of BluR
RA	1,214,517	A→C	5.9%	F320C (TTC→TGC) ‡	bluF ←	blue light‑responsive regulator of BluR
RA	1,214,521	G→C	5.8%	R319G (CGC→GGC)	bluF ←	blue light‑responsive regulator of BluR
RA	1,217,117	C→A	5.2%	intergenic (+121/‑211)	ymgC → / → pdeG	protein YmgC/putative c‑di‑GMP phosphodiesterase PdeG
RA	1,224,239	A→T	12.1%	intergenic (+332/+40)	ycgI → / ← minE	protein YcgI/Z‑ring positioning protein MinE
RA	1,224,242	A→T	11.3%	intergenic (+335/+37)	ycgI → / ← minE	protein YcgI/Z‑ring positioning protein MinE
RA	1,226,114	C→G	8.5%	intergenic (‑34/‑486)	minC ← / → ycgJ	Z‑ring positioning protein MinC/PF05666 family protein YcgJ
RA	1,226,115	A→C	8.4%	intergenic (‑35/‑485)	minC ← / → ycgJ	Z‑ring positioning protein MinC/PF05666 family protein YcgJ
RA	1,226,118	G→T	8.6%	intergenic (‑38/‑482)	minC ← / → ycgJ	Z‑ring positioning protein MinC/PF05666 family protein YcgJ
RA	1,226,119	C→G	8.6%	intergenic (‑39/‑481)	minC ← / → ycgJ	Z‑ring positioning protein MinC/PF05666 family protein YcgJ
RA	1,226,832	T→G	5.6%	F78C (TTT→TGT)	ycgJ →	PF05666 family protein YcgJ
RA	1,226,835	C→A	5.5%	T79K (ACA→AAA)	ycgJ →	PF05666 family protein YcgJ
RA	1,231,956:1	+G	6.9%	coding (771/1269 nt)	umuC →	DNA polymerase V catalytic protein
RA	1,231,963	T→A	9.2%	Y260N (TAT→AAT)	umuC →	DNA polymerase V catalytic protein
RA	1,231,970	Δ1 bp	7.8%	coding (785/1269 nt)	umuC →	DNA polymerase V catalytic protein
RA	1,233,154	T→A	10.4%	intergenic (‑124/+22)	dsbB ← / ← nhaB	protein thiol:quinone oxidoreductase DsbB/Na(+):H(+) antiporter NhaB
RA	1,233,157	T→A	9.6%	intergenic (‑127/+19)	dsbB ← / ← nhaB	protein thiol:quinone oxidoreductase DsbB/Na(+):H(+) antiporter NhaB
RA	1,233,782	C→A	5.3%	A312A (GCG→GCT)	nhaB ←	Na(+):H(+) antiporter NhaB
RA	1,235,686	A→G	16.0%	intergenic (+29/+23)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,235,687	A→T	16.0%	intergenic (+30/+22)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,235,688	A→T	15.8%	intergenic (+31/+21)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,235,689	C→T	16.2%	intergenic (+32/+20)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,260,901	C→T	5.5%	intergenic (‑98/+27)	dauA ← / ← prs	aerobic C4‑dicarboxylate transporter DauA/ribose‑phosphate diphosphokinase
RA	1,260,904	A→G	6.6%	intergenic (‑101/+24)	dauA ← / ← prs	aerobic C4‑dicarboxylate transporter DauA/ribose‑phosphate diphosphokinase
RA	1,263,006	A→G	6.6%	N165N (AAT→AAC)	lolB ←	outer membrane lipoprotein LolB
RA	1,270,717	C→T	8.8%	intergenic (+257/+32)	rdlC → / ← chaA	small regulatory antisense RNA RdlC/Na(+)/K(+):H(+) antiporter ChaA
RA	1,270,723	T→G	8.5%	intergenic (+263/+26)	rdlC → / ← chaA	small regulatory antisense RNA RdlC/Na(+)/K(+):H(+) antiporter ChaA
RA	1,270,726	C→G	9.5%	intergenic (+266/+23)	rdlC → / ← chaA	small regulatory antisense RNA RdlC/Na(+)/K(+):H(+) antiporter ChaA
RA	1,270,729	C→A	8.4%	intergenic (+269/+20)	rdlC → / ← chaA	small regulatory antisense RNA RdlC/Na(+)/K(+):H(+) antiporter ChaA
RA	1,272,541	G→T	6.0%	C12F (TGT→TTT) ‡	chaC →	glutathione‑specific gamma‑glutamylcyclotransferase
RA	1,272,542	T→A	6.0%	C12* (TGT→TGA) ‡	chaC →	glutathione‑specific gamma‑glutamylcyclotransferase
RA	1,272,543	A→C	6.1%	K13Q (AAA→CAA)	chaC →	glutathione‑specific gamma‑glutamylcyclotransferase
RA	1,272,546	A→T	6.9%	T14S (ACG→TCG)	chaC →	glutathione‑specific gamma‑glutamylcyclotransferase
RA	1,273,229	A→T	7.6%	intergenic (+27/+17)	chaC → / ← ychN	glutathione‑specific gamma‑glutamylcyclotransferase/DsrE/F sulfur relay family protein YchN
RA	1,286,768	C→A	5.6%	C20* (TGC→TGA)	ychS →	putative uncharacterized protein YchS
RA	1,287,024	G→A	12.2%	intergenic (+40/+42)	ychS → / ← rttR	putative uncharacterized protein YchS/small RNA RttR
RA	1,287,161	G→A	6.6%	noncoding (76/171 nt) Q6* (CAA→TAA)	rttR ← tpr ←	small RNA RttR protamine‑like protein
RA	1,287,673	A→G	6.1%	intergenic (‑51/+109)	tyrT ← / ← purU	tRNA‑Tyr/formyltetrahydrofolate deformylase
RA	1,287,678	A→T	5.9%	intergenic (‑56/+104)	tyrT ← / ← purU	tRNA‑Tyr/formyltetrahydrofolate deformylase
RA	1,287,680	C→G	5.6%	intergenic (‑58/+102)	tyrT ← / ← purU	tRNA‑Tyr/formyltetrahydrofolate deformylase
RA	1,287,682	A→T	5.5%	intergenic (‑60/+100)	tyrT ← / ← purU	tRNA‑Tyr/formyltetrahydrofolate deformylase
RA	1,292,472	G→A	6.5%	intergenic (+107/+37)	galU → / ← hns	UTP‑‑glucose‑1‑phosphate uridylyltransferase/DNA‑binding transcriptional dual regulator H‑NS
RA	1,292,473	C→G	6.2%	intergenic (+108/+36)	galU → / ← hns	UTP‑‑glucose‑1‑phosphate uridylyltransferase/DNA‑binding transcriptional dual regulator H‑NS
RA	1,292,474	T→C	6.2%	intergenic (+109/+35)	galU → / ← hns	UTP‑‑glucose‑1‑phosphate uridylyltransferase/DNA‑binding transcriptional dual regulator H‑NS
JC JC	1,293,032	IS1 (–) +8 bp	94.6%	intergenic (‑110/‑488)	hns ← / → tdk	DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase
RA	1,297,267	A→G	13.2%	V285V (GTT→GTC) ‡	adhE ←	aldehyde‑alcohol dehydrogenase
RA	1,297,268	A→T	13.1%	V285D (GTT→GAT) ‡	adhE ←	aldehyde‑alcohol dehydrogenase
RA	1,297,269	C→T	13.2%	V285I (GTT→ATT) ‡	adhE ←	aldehyde‑alcohol dehydrogenase
RA	1,299,267:1	+A	7.8%	intergenic (+22/‑264)	ychE → / → insH21	putative inner membrane protein/IS5 transposase and trans‑activator
RA	1,299,270	C→G	7.8%	intergenic (+25/‑261)	ychE → / → insH21	putative inner membrane protein/IS5 transposase and trans‑activator
RA	1,299,273	Δ1 bp	7.7%	intergenic (+28/‑258)	ychE → / → insH21	putative inner membrane protein/IS5 transposase and trans‑activator
RA	1,302,827	G→A	7.9%	intergenic (+14/‑72)	oppA → / → oppB	oligopeptide ABC transporter periplasmic binding protein/murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,302,834	G→C	8.7%	intergenic (+21/‑65)	oppA → / → oppB	oligopeptide ABC transporter periplasmic binding protein/murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,302,835	T→A	8.7%	intergenic (+22/‑64)	oppA → / → oppB	oligopeptide ABC transporter periplasmic binding protein/murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,302,836	G→C	8.7%	intergenic (+23/‑63)	oppA → / → oppB	oligopeptide ABC transporter periplasmic binding protein/murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,302,843	T→C	8.5%	intergenic (+30/‑56)	oppA → / → oppB	oligopeptide ABC transporter periplasmic binding protein/murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,306,787	G→A	11.6%	intergenic (+19/+34)	oppF → / ← yciU	murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF/DUF440 domain‑containing protein YciU
RA	1,306,788	T→C	10.7%	intergenic (+20/+33)	oppF → / ← yciU	murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF/DUF440 domain‑containing protein YciU
RA	1,311,830	A→G	12.0%	intergenic (+22/+18)	tonB → / ← yciA	Ton complex subunit TonB/acyl‑CoA thioesterase
RA	1,311,831	C→T	12.1%	intergenic (+23/+17)	tonB → / ← yciA	Ton complex subunit TonB/acyl‑CoA thioesterase
RA	1,314,683	T→A	8.1%	intergenic (+25/+35)	ompW → / ← yciE	outer membrane protein W/DUF892 domain‑containing protein YciE
RA	1,314,684	A→T	8.1%	intergenic (+26/+34)	ompW → / ← yciE	outer membrane protein W/DUF892 domain‑containing protein YciE
RA	1,321,427	A→T	5.9%	L507Q (CTG→CAG)	trpE ←	anthranilate synthase subunit TrpE
RA	1,321,432	A→T	5.7%	A505A (GCT→GCA)	trpE ←	anthranilate synthase subunit TrpE
RA	1,322,394	C→G	5.1%	D185H (GAC→CAC)	trpE ←	anthranilate synthase subunit TrpE
RA	1,322,396	A→T	5.0%	I184N (ATT→AAT)	trpE ←	anthranilate synthase subunit TrpE
RA	1,324,837	A→C	9.8%	Y31S (TAT→TCT) ‡	yciQ →	DUF2207 domain‑containing protein YciQ
RA	1,324,838	T→A	10.4%	Y31* (TAT→TAA) ‡	yciQ →	DUF2207 domain‑containing protein YciQ
RA	1,324,839	G→T	10.1%	E32* (GAA→TAA)	yciQ →	DUF2207 domain‑containing protein YciQ
RA	1,344,033	A→G	7.9%	L105P (CTG→CCG)	yciT ←	putative DNA‑binding transcriptional regulator YciT
RA	1,344,036	G→C	7.9%	T104S (ACT→AGT)	yciT ←	putative DNA‑binding transcriptional regulator YciT
RA	1,344,039	C→T	8.0%	R103Q (CGG→CAG)	yciT ←	putative DNA‑binding transcriptional regulator YciT
RA	1,346,951	C→T	12.0%	intergenic (+51/+27)	ymiB → / ← rnb	putative protein YmiB/RNase II
RA	1,346,953	A→C	12.0%	intergenic (+53/+25)	ymiB → / ← rnb	putative protein YmiB/RNase II
RA	1,346,955	G→C	11.1%	intergenic (+55/+23)	ymiB → / ← rnb	putative protein YmiB/RNase II
RA	1,346,957	G→T	11.3%	intergenic (+57/+21)	ymiB → / ← rnb	putative protein YmiB/RNase II
RA	1,346,959	A→G	11.2%	intergenic (+59/+19)	ymiB → / ← rnb	putative protein YmiB/RNase II
RA	1,347,040	C→T	6.3%	D625N (GAC→AAC)	rnb ←	RNase II
RA	1,347,042	A→T	6.1%	I624N (ATT→AAT)	rnb ←	RNase II
RA	1,347,044	A→G	6.3%	V623V (GTT→GTC)	rnb ←	RNase II
RA	1,349,053	A→T	8.9%	I352N (ATT→AAT)	yciW ←	putative oxidoreductase
RA	1,351,774	G→A	5.4%	intergenic (‑14/+54)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,776	T→G	5.6%	intergenic (‑16/+52)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,777	T→A	5.5%	intergenic (‑17/+51)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,779	A→T	6.1%	intergenic (‑19/+49)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,781	T→A	5.1%	intergenic (‑21/+47)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,782	C→A	5.7%	intergenic (‑22/+46)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,784	T→C	5.7%	intergenic (‑24/+44)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,354,220	C→A	5.7%	G100V (GGT→GTT)	sapC ←	putrescine ABC exporter membrane protein SapC
RA	1,354,223	A→G	5.8%	V99A (GTG→GCG) ‡	sapC ←	putrescine ABC exporter membrane protein SapC
RA	1,354,224	C→T	5.7%	V99M (GTG→ATG) ‡	sapC ←	putrescine ABC exporter membrane protein SapC
RA	1,354,227	T→G	6.4%	T98P (ACC→CCC)	sapC ←	putrescine ABC exporter membrane protein SapC
RA	1,355,187	A→G	5.4%	V95A (GTG→GCG) ‡	sapB ←	putrescine ABC exporter membrane subunit SapB
RA	1,355,188	C→T	5.4%	V95M (GTG→ATG) ‡	sapB ←	putrescine ABC exporter membrane subunit SapB
RA	1,375,088	G→C	7.2%	V42V (GTG→GTC)	ycjQ →	putative zinc‑binding dehydrogenase YcjQ
RA	1,375,090	T→A	6.6%	V43D (GTC→GAC)	ycjQ →	putative zinc‑binding dehydrogenase YcjQ
RA	1,375,092	G→C	7.1%	D44H (GAC→CAC)	ycjQ →	putative zinc‑binding dehydrogenase YcjQ
RA	1,376,944	T→C	6.5%	V38A (GTG→GCG)	ycjS →	putative oxidoreductase YcjS
RA	1,376,952	T→A	10.2%	C41S (TGT→AGT) ‡	ycjS →	putative oxidoreductase YcjS
RA	1,376,953	G→C	10.1%	C41S (TGT→TCT) ‡	ycjS →	putative oxidoreductase YcjS
RA	1,376,954	T→A	10.2%	C41* (TGT→TGA) ‡	ycjS →	putative oxidoreductase YcjS
RA	1,388,283	C→T	6.6%	intergenic (+22/+22)	tyrR → / ← tpx	DNA‑binding transcriptional dual regulator TyrR/lipid hydroperoxide peroxidase
RA	1,388,284	A→T	6.7%	intergenic (+23/+21)	tyrR → / ← tpx	DNA‑binding transcriptional dual regulator TyrR/lipid hydroperoxide peroxidase
RA	1,388,285	A→G	6.8%	intergenic (+24/+20)	tyrR → / ← tpx	DNA‑binding transcriptional dual regulator TyrR/lipid hydroperoxide peroxidase
RA	1,406,093	A→G	5.7%	I39V (ATC→GTC)	smrA →	DNA endonuclease SmrA
RA	1,406,098	C→T	5.8%	D40D (GAC→GAT)	smrA →	DNA endonuclease SmrA
RA	1,408,285	T→A	8.8%	V79D (GTC→GAC)	zntB →	Zn(2(+)):H(+) symporter
RA	1,408,287	A→G	8.7%	S80G (AGC→GGC)	zntB →	Zn(2(+)):H(+) symporter
RA	1,408,290	C→T	8.8%	R81C (CGT→TGT) ‡	zntB →	Zn(2(+)):H(+) symporter
RA	1,408,292	T→A	8.9%	R81R (CGT→CGA) ‡	zntB →	Zn(2(+)):H(+) symporter
RA	1,408,537	A→T	6.1%	E163V (GAG→GTG)	zntB →	Zn(2(+)):H(+) symporter
RA	1,408,546	A→T	6.0%	H166L (CAC→CTC)	zntB →	Zn(2(+)):H(+) symporter
RA	1,410,986	A→G	7.8%	intergenic (+102/+27)	dbpA → / ← ttcA	ATP‑dependent RNA helicase DbpA/tRNA cytosine(32) 2‑sulfurtransferase TtcA
RA	1,410,990	T→A	7.5%	intergenic (+106/+23)	dbpA → / ← ttcA	ATP‑dependent RNA helicase DbpA/tRNA cytosine(32) 2‑sulfurtransferase TtcA
RA	1,410,991	T→A	7.5%	intergenic (+107/+22)	dbpA → / ← ttcA	ATP‑dependent RNA helicase DbpA/tRNA cytosine(32) 2‑sulfurtransferase TtcA
RA	1,410,995	C→T	7.5%	intergenic (+111/+18)	dbpA → / ← ttcA	ATP‑dependent RNA helicase DbpA/tRNA cytosine(32) 2‑sulfurtransferase TtcA
RA	1,413,029	G→C	6.3%	S69R (AGC→AGG) ‡	intR ←	Rac prophage; putative integrase
RA	1,413,031	T→A	6.7%	S69C (AGC→TGC) ‡	intR ←	Rac prophage; putative integrase
RA	1,413,033	G→C	6.7%	S68C (TCC→TGC)	intR ←	Rac prophage; putative integrase
RA	1,413,966	T→A	5.0%	intergenic (‑39/+18)	ralR ← / ← recT	Rac prophage; endodeoxyribonuclease toxin RalR/Rac prophage; recombinase, DNA renaturation
RA	1,413,968	A→G	5.3%	intergenic (‑41/+16)	ralR ← / ← recT	Rac prophage; endodeoxyribonuclease toxin RalR/Rac prophage; recombinase, DNA renaturation
RA	1,426,178	A→T	13.7%	intergenic (+198/‑276)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,417	T→C	10.0%	intergenic (+437/‑37)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,418	T→G	9.8%	intergenic (+438/‑36)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,421	C→A	10.5%	intergenic (+441/‑33)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,422	G→A	10.1%	intergenic (+442/‑32)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,441,534	A→T	6.4%	F70L (TTT→TTA) ‡	hslJ ←	lipoprotein implicated in Novobiocin resistance
RA	1,441,535	A→T	6.3%	F70Y (TTT→TAT) ‡	hslJ ←	lipoprotein implicated in Novobiocin resistance
RA	1,441,833	G→C	10.2%	intergenic (‑90/+21)	hslJ ← / ← ldhA	lipoprotein implicated in Novobiocin resistance/D‑lactate dehydrogenase
RA	1,441,835	A→T	10.6%	intergenic (‑92/+19)	hslJ ← / ← ldhA	lipoprotein implicated in Novobiocin resistance/D‑lactate dehydrogenase
RA	1,441,837	G→C	10.6%	intergenic (‑94/+17)	hslJ ← / ← ldhA	lipoprotein implicated in Novobiocin resistance/D‑lactate dehydrogenase
RA	1,446,357:1	+T	6.0%	intergenic (+151/+21)	ydbL → / ← feaR	DUF1318 domain‑containing protein YdbL/DNA‑binding transcriptional activator FeaR
RA	1,446,362	Δ1 bp	5.9%	intergenic (+156/+16)	ydbL → / ← feaR	DUF1318 domain‑containing protein YdbL/DNA‑binding transcriptional activator FeaR
RA	1,446,785	T→A	8.0%	T167S (ACA→TCA)	feaR ←	DNA‑binding transcriptional activator FeaR
RA	1,446,786	T→A	8.2%	E166D (GAA→GAT) ‡	feaR ←	DNA‑binding transcriptional activator FeaR
RA	1,446,787	T→A	8.2%	E166V (GAA→GTA) ‡	feaR ←	DNA‑binding transcriptional activator FeaR
RA	1,449,050	T→A	10.8%	intergenic (+32/+26)	feaB → / ← tynA	phenylacetaldehyde dehydrogenase/copper‑containing amine oxidase
RA	1,449,799	C→G	6.3%	T517T (ACG→ACC)	tynA ←	copper‑containing amine oxidase
RA	1,449,802	A→G	6.4%	A516A (GCT→GCC) ‡	tynA ←	copper‑containing amine oxidase
RA	1,449,803	G→C	6.4%	A516G (GCT→GGT) ‡	tynA ←	copper‑containing amine oxidase
RA	1,449,804	C→T	6.3%	A516T (GCT→ACT) ‡	tynA ←	copper‑containing amine oxidase
RA	1,449,807	C→G	6.1%	G515R (GGT→CGT)	tynA ←	copper‑containing amine oxidase
RA	1,457,528	G→A	8.8%	R11Q (CGA→CAA)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,530	G→T	8.2%	V12L (GTA→TTA) ‡	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,531	T→A	8.6%	V12E (GTA→GAA) ‡	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,532	A→C	8.5%	V12V (GTA→GTC) ‡	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,534	T→C	8.7%	L13S (TTG→TCG)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,976	A→T	10.3%	G160G (GGA→GGT)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,979	A→T	10.2%	E161D (GAA→GAT)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,981	G→C	10.4%	S162T (AGT→ACT)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,983	A→T	10.6%	I163F (ATC→TTC)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,986	A→T	10.8%	T164S (ACC→TCC)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,461,488	G→C	8.5%	G199A (GGC→GCC)	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,491	T→G	8.5%	I200S (ATT→AGT) ‡	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,492	T→A	8.4%	I200I (ATT→ATA) ‡	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,493	C→A	8.4%	L201M (CTG→ATG)	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,496	G→C	8.9%	A202P (GCT→CCT)	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,462,028	G→A	6.4%	G379D (GGT→GAT) ‡	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,462,029	T→C	6.5%	G379G (GGT→GGC) ‡	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,463,240	T→A	6.0%	S372S (TCT→TCA)	paaK →	phenylacetate‑CoA ligase
RA	1,463,241	G→C	6.1%	V373L (GTG→CTG) ‡	paaK →	phenylacetate‑CoA ligase
RA	1,463,242	T→A	6.0%	V373E (GTG→GAG) ‡	paaK →	phenylacetate‑CoA ligase
RA	1,482,222	A→T	6.0%	intergenic (+21/+33)	ynbD → / ← azoR	putative phosphatase/FMN dependent NADH:quinone oxidoreductase
RA	1,482,224	T→G	6.1%	intergenic (+23/+31)	ynbD → / ← azoR	putative phosphatase/FMN dependent NADH:quinone oxidoreductase
RA	1,482,227	C→A	6.0%	intergenic (+26/+28)	ynbD → / ← azoR	putative phosphatase/FMN dependent NADH:quinone oxidoreductase
RA	1,482,229	A→T	5.9%	intergenic (+28/+26)	ynbD → / ← azoR	putative phosphatase/FMN dependent NADH:quinone oxidoreductase
RA	1,491,904	A→T	6.0%	intergenic (+54/+18)	ydcA → / ← hokB	protein YdcA/toxin HokB
RA	1,491,905	A→T	6.6%	intergenic (+55/+17)	ydcA → / ← hokB	protein YdcA/toxin HokB
RA	1,491,906	A→T	6.1%	intergenic (+56/+16)	ydcA → / ← hokB	protein YdcA/toxin HokB
RA	1,499,361	A→G	9.6%	N142D (AAC→GAC)	rimL →	ribosomal‑protein‑L12‑serine acetyltransferase
RA	1,499,365	A→T	9.4%	Q143L (CAG→CTG)	rimL →	ribosomal‑protein‑L12‑serine acetyltransferase
RA	1,499,369	C→T	9.4%	V144V (GTC→GTT)	rimL →	ribosomal‑protein‑L12‑serine acetyltransferase
RA	1,502,080	C→T	5.3%	G173G (GGC→GGT)	tehB →	tellurite methyltransferase
RA	1,502,082	A→C	6.3%	E174A (GAG→GCG)	tehB →	tellurite methyltransferase
RA	1,502,084	C→G	5.4%	L175V (CTG→GTG)	tehB →	tellurite methyltransferase
RA	1,502,089	C→G	5.7%	H176Q (CAC→CAG)	tehB →	tellurite methyltransferase
RA	1,502,091	G→T	5.7%	R177L (CGC→CTC)	tehB →	tellurite methyltransferase
RA	1,502,093	A→G	5.6%	T178A (ACC→GCC)	tehB →	tellurite methyltransferase
RA	1,504,884	T→C	7.1%	intergenic (+19/+21)	insQ → / ← ydcO	putative insertion element transposase InsQ/putative transport protein YdcO
RA	1,504,888	T→G	6.2%	intergenic (+23/+17)	insQ → / ← ydcO	putative insertion element transposase InsQ/putative transport protein YdcO
RA	1,504,889	C→A	6.2%	intergenic (+24/+16)	insQ → / ← ydcO	putative insertion element transposase InsQ/putative transport protein YdcO
RA	1,504,893	G→A	6.2%	intergenic (+28/+12)	insQ → / ← ydcO	putative insertion element transposase InsQ/putative transport protein YdcO
RA	1,517,055	C→A	6.9%	intergenic (+53/+44)	patD → / ← yncL	gamma‑aminobutyraldehyde dehydrogenase/uncharacterized protein YncL
RA	1,517,057	C→A	7.3%	intergenic (+55/+42)	patD → / ← yncL	gamma‑aminobutyraldehyde dehydrogenase/uncharacterized protein YncL
RA	1,517,059	G→C	6.7%	intergenic (+57/+40)	patD → / ← yncL	gamma‑aminobutyraldehyde dehydrogenase/uncharacterized protein YncL
RA	1,517,061	T→G	7.0%	intergenic (+59/+38)	patD → / ← yncL	gamma‑aminobutyraldehyde dehydrogenase/uncharacterized protein YncL
RA	1,517,063	T→G	7.0%	intergenic (+61/+36)	patD → / ← yncL	gamma‑aminobutyraldehyde dehydrogenase/uncharacterized protein YncL
RA	1,517,481	C→G	5.3%	R31R (CGC→CGG)	ortT →	orphan toxin OrtT
RA	1,520,584	A→G	6.7%	D108G (GAC→GGC) ‡	mcbR →	DNA‑binding transcriptional dual regulator McbR
RA	1,520,585	C→T	6.8%	D108D (GAC→GAT) ‡	mcbR →	DNA‑binding transcriptional dual regulator McbR
RA	1,523,242	C→T	5.9%	intergenic (‑177/‑65)	yncD ← / → yncE	putative TonB‑dependent outer membrane receptor/PQQ‑like domain‑containing protein YncE
RA	1,523,243	G→C	6.7%	intergenic (‑178/‑64)	yncD ← / → yncE	putative TonB‑dependent outer membrane receptor/PQQ‑like domain‑containing protein YncE
RA	1,523,246	G→C	5.9%	intergenic (‑181/‑61)	yncD ← / → yncE	putative TonB‑dependent outer membrane receptor/PQQ‑like domain‑containing protein YncE
RA	1,523,247	A→G	5.9%	intergenic (‑182/‑60)	yncD ← / → yncE	putative TonB‑dependent outer membrane receptor/PQQ‑like domain‑containing protein YncE
RA	1,530,490	T→C	14.9%	T5T (ACA→ACG)	yncO ←	protein YncO
RA	1,530,496	G→T	14.9%	Y3* (TAC→TAA)	yncO ←	protein YncO
RA	1,530,499	A→C	15.2%	I2M (ATT→ATG)	yncO ←	protein YncO
RA	1,530,505	G→A	15.3%	intergenic (‑1/‑81)	yncO ← / → yncI	protein YncO/putative transposase YncI
RA	1,533,707	G→T	7.1%	P49T (CCT→ACT)	yddH ←	flavin reductase‑like protein YddH
RA	1,533,710	C→G	6.7%	E48Q (GAA→CAA)	yddH ←	flavin reductase‑like protein YddH
RA	1,533,713	A→C	6.0%	F47V (TTT→GTT)	yddH ←	flavin reductase‑like protein YddH
RA	1,534,890	G→A	8.7%	intergenic (+21/+75)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,534,891	C→A	8.7%	intergenic (+22/+74)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,534,897	A→T	9.6%	intergenic (+28/+68)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,534,898	A→T	9.2%	intergenic (+29/+67)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,534,904	T→G	10.0%	intergenic (+35/+61)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,534,905	T→C	10.1%	intergenic (+36/+60)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,540,645	G→C	6.4%	A649G (GCC→GGC) ‡	narZ ←	nitrate reductase Z subunit alpha
RA	1,540,646	C→G	6.4%	A649P (GCC→CCC) ‡	narZ ←	nitrate reductase Z subunit alpha
RA	1,540,647	G→C	6.4%	R648R (CGC→CGG)	narZ ←	nitrate reductase Z subunit alpha
RA	1,552,905	C→T	6.5%	A312T (GCG→ACG)	adhP ←	ethanol dehydrogenase/alcohol dehydrogenase
RA	1,552,908	A→G	6.7%	L311L (TTA→CTA)	adhP ←	ethanol dehydrogenase/alcohol dehydrogenase
RA	1,557,343	C→T	10.1%	T232T (ACG→ACA) ‡	ddpF ←	putative D,D‑dipeptide ABC transporter ATP‑binding subunit DdpF
RA	1,557,345	T→A	9.8%	T232S (ACG→TCG) ‡	ddpF ←	putative D,D‑dipeptide ABC transporter ATP‑binding subunit DdpF
RA	1,557,347	A→G	10.3%	L231P (CTG→CCG)	ddpF ←	putative D,D‑dipeptide ABC transporter ATP‑binding subunit DdpF
RA	1,560,803	C→T	8.3%	D43N (GAC→AAC)	ddpB ←	putative D,D‑dipeptide ABC transporter membrane subunit DdpB
RA	1,560,806	C→T	8.2%	G42S (GGT→AGT)	ddpB ←	putative D,D‑dipeptide ABC transporter membrane subunit DdpB
RA	1,560,807	C→G	8.2%	A41A (GCG→GCC)	ddpB ←	putative D,D‑dipeptide ABC transporter membrane subunit DdpB
RA	1,560,810	C→G	7.9%	L40L (CTG→CTC) ‡	ddpB ←	putative D,D‑dipeptide ABC transporter membrane subunit DdpB
RA	1,560,811	A→G	7.9%	L40P (CTG→CCG) ‡	ddpB ←	putative D,D‑dipeptide ABC transporter membrane subunit DdpB
RA	1,560,814	A→G	8.1%	L39S (TTA→TCA)	ddpB ←	putative D,D‑dipeptide ABC transporter membrane subunit DdpB
RA	1,567,466	G→C	7.4%	intergenic (‑247/+38)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,467	G→T	7.4%	intergenic (‑248/+37)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,469	A→T	7.4%	intergenic (‑250/+35)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,471	A→C	7.5%	intergenic (‑252/+33)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,472	G→C	7.4%	intergenic (‑253/+32)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,568,915	G→A	8.7%	intergenic (‑92/+39)	yddW ← / ← gadC	putative lipoprotein YddW/L‑glutamate:4‑aminobutyrate antiporter
RA	1,568,917	A→T	8.8%	intergenic (‑94/+37)	yddW ← / ← gadC	putative lipoprotein YddW/L‑glutamate:4‑aminobutyrate antiporter
RA	1,568,919	T→C	8.8%	intergenic (‑96/+35)	yddW ← / ← gadC	putative lipoprotein YddW/L‑glutamate:4‑aminobutyrate antiporter
RA	1,575,215	C→T	5.6%	intergenic (‑13/+32)	pqqL ← / ← yddB	putative zinc peptidase/putative TonB‑dependent receptor
RA	1,575,216	G→A	5.6%	intergenic (‑14/+31)	pqqL ← / ← yddB	putative zinc peptidase/putative TonB‑dependent receptor
RA	1,575,221	T→C	5.8%	intergenic (‑19/+26)	pqqL ← / ← yddB	putative zinc peptidase/putative TonB‑dependent receptor
RA	1,575,222	A→G	5.7%	intergenic (‑20/+25)	pqqL ← / ← yddB	putative zinc peptidase/putative TonB‑dependent receptor
RA	1,586,948	C→A	6.2%	V263F (GTC→TTC)	ydeQ ←	putative fimbrial adhesin protein YdeQ
RA	1,586,950	T→A	6.5%	N262I (AAT→ATT)	ydeQ ←	putative fimbrial adhesin protein YdeQ
RA	1,586,952	T→G	6.5%	E261D (GAA→GAC)	ydeQ ←	putative fimbrial adhesin protein YdeQ
RA	1,588,479	T→A	5.6%	N121Y (AAT→TAT)	ydeS ←	putative fimbrial protein YdeS
RA	1,590,603	G→C	5.8%	intergenic (‑67/+251)	yneL ← / ← hipA	putative HTH‑type transcriptional regulator YneL/serine/threonine kinase HipA
RA	1,590,605	C→T	5.0%	intergenic (‑69/+249)	yneL ← / ← hipA	putative HTH‑type transcriptional regulator YneL/serine/threonine kinase HipA
RA	1,596,499	C→A	9.8%	pseudogene (1588/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,596,501	T→A	9.5%	pseudogene (1586/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,596,503	T→G	10.0%	pseudogene (1584/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,596,510	A→G	6.5%	pseudogene (1577/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,597,272	T→A	5.6%	pseudogene (815/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,602,236	A→T	8.3%	Q249H (CAA→CAT)	lsrA →	Autoinducer‑2 ABC transporter ATP binding subunit
RA	1,602,239	A→T	8.7%	K250N (AAA→AAT)	lsrA →	Autoinducer‑2 ABC transporter ATP binding subunit
RA	1,602,242	A→T	8.4%	L251F (TTA→TTT)	lsrA →	Autoinducer‑2 ABC transporter ATP binding subunit
RA	1,603,724	A→C	12.8%	T236P (ACC→CCC)	lsrC →	Autoinducer‑2 ABC transporter membrane subunit LsrC
RA	1,603,735	G→T	10.1%	G239G (GGG→GGT)	lsrC →	Autoinducer‑2 ABC transporter membrane subunit LsrC
RA	1,620,224	C→G	8.5%	intergenic (+17/+14)	marB → / ← eamA	multiple antibiotic resistance protein/cysteine/O‑acetylserine exporter EamA
RA	1,620,227	C→G	8.7%	intergenic (+20/+11)	marB → / ← eamA	multiple antibiotic resistance protein/cysteine/O‑acetylserine exporter EamA
RA	1,625,304	Δ1 bp	6.2%	intergenic (+13/+31)	ydeJ → / ← dcp	conserved protein YdeJ/peptidyl‑dipeptidase Dcp
RA	1,625,306	C→A	6.2%	intergenic (+15/+29)	ydeJ → / ← dcp	conserved protein YdeJ/peptidyl‑dipeptidase Dcp
RA	1,625,312:1	+G	6.5%	intergenic (+21/+23)	ydeJ → / ← dcp	conserved protein YdeJ/peptidyl‑dipeptidase Dcp
RA	1,625,313	T→C	5.5%	intergenic (+22/+22)	ydeJ → / ← dcp	conserved protein YdeJ/peptidyl‑dipeptidase Dcp
RA	1,627,704	A→C	10.0%	E63A (GAG→GCG)	ydfG →	3‑hydroxy acid dehydrogenase
RA	1,627,710	T→C	9.9%	L65P (CTG→CCG) ‡	ydfG →	3‑hydroxy acid dehydrogenase
RA	1,627,711	G→A	10.3%	L65L (CTG→CTA) ‡	ydfG →	3‑hydroxy acid dehydrogenase
RA	1,627,717	G→T	10.4%	S67S (TCG→TCT)	ydfG →	3‑hydroxy acid dehydrogenase
RA	1,629,435	G→A	18.1%	intergenic (+17/+18)	ydfZ → / ← ydfI	putative selenoprotein YdfZ/putative oxidoreductase YdfI
RA	1,629,436	A→T	17.2%	intergenic (+18/+17)	ydfZ → / ← ydfI	putative selenoprotein YdfZ/putative oxidoreductase YdfI
RA	1,629,437	T→C	17.7%	intergenic (+19/+16)	ydfZ → / ← ydfI	putative selenoprotein YdfZ/putative oxidoreductase YdfI
RA	1,643,110	T→A	11.7%	K44N (AAA→AAT) ‡	ydfT ←	Qin prophage; putative antitermination protein Q
RA	1,643,111	T→G	10.9%	K44T (AAA→ACA) ‡	ydfT ←	Qin prophage; putative antitermination protein Q
RA	1,643,116	C→A	11.0%	Q42H (CAG→CAT) ‡	ydfT ←	Qin prophage; putative antitermination protein Q
RA	1,643,117	T→A	11.4%	Q42L (CAG→CTG) ‡	ydfT ←	Qin prophage; putative antitermination protein Q
RA	1,647,873	C→T	7.6%	intergenic (‑23/‑61)	dicC ← / → dicA	Qin prophage; DNA‑binding transcriptional regulator for DicB/DNA‑binding transcriptional dual regulator DicA
RA	1,647,876	A→G	7.9%	intergenic (‑26/‑58)	dicC ← / → dicA	Qin prophage; DNA‑binding transcriptional regulator for DicB/DNA‑binding transcriptional dual regulator DicA
RA	1,657,895	A→T	7.1%	intergenic (+25/‑174)	ynfD → / → ynfE	DUF1161 domain‑containing protein YnfD/putative selenate reductase YnfE
RA	1,657,898	A→T	7.1%	intergenic (+28/‑171)	ynfD → / → ynfE	DUF1161 domain‑containing protein YnfD/putative selenate reductase YnfE
RA	1,657,901	A→T	7.0%	intergenic (+31/‑168)	ynfD → / → ynfE	DUF1161 domain‑containing protein YnfD/putative selenate reductase YnfE
RA	1,664,584	Δ1 bp	7.1%	coding (79/615 nt)	dmsD →	redox enzyme maturation protein DmsD
RA	1,664,591	A→C	7.2%	E29A (GAA→GCA) ‡	dmsD →	redox enzyme maturation protein DmsD
RA	1,664,592	A→T	7.2%	E29D (GAA→GAT) ‡	dmsD →	redox enzyme maturation protein DmsD
RA	1,664,593	G→T	7.1%	A30S (GCC→TCC)	dmsD →	redox enzyme maturation protein DmsD
RA	1,673,540	T→G	5.9%	intergenic (‑39/‑373)	mdtJ ← / → tqsA	multidrug/spermidine efflux pump membrane subunit MdtJ/autoinducer 2 exporter
RA	1,673,545	C→A	6.0%	intergenic (‑44/‑368)	mdtJ ← / → tqsA	multidrug/spermidine efflux pump membrane subunit MdtJ/autoinducer 2 exporter
RA	1,679,398	T→A	7.9%	intergenic (+27/‑159)	ydgH → / → ydgI	DUF1471 domain‑containing protein YdgH/putative arginine:ornithine antiporter
RA	1,679,400	G→C	6.6%	intergenic (+29/‑157)	ydgH → / → ydgI	DUF1471 domain‑containing protein YdgH/putative arginine:ornithine antiporter
RA	1,679,402	T→A	6.9%	intergenic (+31/‑155)	ydgH → / → ydgI	DUF1471 domain‑containing protein YdgH/putative arginine:ornithine antiporter
RA	1,681,614	G→A	12.5%	V213V (GTG→GTA)	folM →	dihydromonapterin reductase
RA	1,681,622	T→A	10.8%	L216Q (CTG→CAG)	folM →	dihydromonapterin reductase
RA	1,684,016	A→G	6.6%	S379G (AGC→GGC)	rstB →	sensory histidine kinase RstB
RA	1,684,019	C→T	6.5%	R380W (CGG→TGG)	rstB →	sensory histidine kinase RstB
RA	1,693,416	A→G	7.4%	L283P (CTG→CCG) ‡	uidB ←	glucuronide:H(+) symporter
RA	1,693,417	G→C	7.4%	L283V (CTG→GTG) ‡	uidB ←	glucuronide:H(+) symporter
RA	1,698,585	T→G	11.0%	E199A (GAA→GCA)	malI ←	DNA‑binding transcriptional repressor MalI
RA	1,698,587	T→A	10.7%	A198A (GCA→GCT) ‡	malI ←	DNA‑binding transcriptional repressor MalI
RA	1,698,589	C→A	10.6%	A198S (GCA→TCA) ‡	malI ←	DNA‑binding transcriptional repressor MalI
RA	1,703,251	A→T	8.8%	intergenic (+17/+17)	add → / ← ydgJ	adenosine deaminase/putative oxidoreductase YdgJ
RA	1,703,252	A→T	9.0%	intergenic (+18/+16)	add → / ← ydgJ	adenosine deaminase/putative oxidoreductase YdgJ
RA	1,707,028	T→G	7.7%	V37G (GTA→GGA) ‡	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,707,029	A→G	7.6%	V37V (GTA→GTG) ‡	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,707,030	C→T	8.0%	P38S (CCC→TCC) ‡	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,707,031	C→A	8.0%	P38H (CCC→CAC) ‡	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,707,755	T→A	10.8%	A279A (GCT→GCA)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,707,758	T→A	10.1%	Y280* (TAT→TAA)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,708,758	G→C	54.7%	E614Q (GAA→CAA)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,708,973	T→C	12.9%	A685A (GCT→GCC)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,712,337	A→T	8.0%	intergenic (+179/‑432)	nth → / → dtpA	endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA
RA	1,712,338	A→T	8.0%	intergenic (+180/‑431)	nth → / → dtpA	endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA
RA	1,715,020	G→T	8.9%	intergenic (+38/+6)	gstA → / ← pdxY	glutathione S‑transferase GstA/pyridoxal kinase 2
RA	1,715,919	T→G	7.7%	intergenic (‑30/+29)	pdxY ← / ← tyrS	pyridoxal kinase 2/tyrosine‑‑tRNA ligase
RA	1,715,920	T→A	6.8%	intergenic (‑31/+28)	pdxY ← / ← tyrS	pyridoxal kinase 2/tyrosine‑‑tRNA ligase
RA	1,715,921	T→A	8.0%	intergenic (‑32/+27)	pdxY ← / ← tyrS	pyridoxal kinase 2/tyrosine‑‑tRNA ligase
RA	1,715,922	C→A	6.7%	intergenic (‑33/+26)	pdxY ← / ← tyrS	pyridoxal kinase 2/tyrosine‑‑tRNA ligase
RA	1,720,364	G→T	7.9%	intergenic (+21/+26)	slyB → / ← slyA	outer membrane lipoprotein SlyB/DNA‑binding transcriptional dual regulator SlyA
RA	1,720,365	T→A	6.4%	intergenic (+22/+25)	slyB → / ← slyA	outer membrane lipoprotein SlyB/DNA‑binding transcriptional dual regulator SlyA
RA	1,720,366	T→A	6.4%	intergenic (+23/+24)	slyB → / ← slyA	outer membrane lipoprotein SlyB/DNA‑binding transcriptional dual regulator SlyA
RA	1,720,367	A→C	8.6%	intergenic (+24/+23)	slyB → / ← slyA	outer membrane lipoprotein SlyB/DNA‑binding transcriptional dual regulator SlyA
RA	1,724,279	T→A	6.3%	D126V (GAT→GTT) ‡	sodC ←	superoxide dismutase (Cu‑Zn)
RA	1,724,280	C→A	6.0%	D126Y (GAT→TAT) ‡	sodC ←	superoxide dismutase (Cu‑Zn)
RA	1,724,282	G→C	7.1%	T125S (ACC→AGC)	sodC ←	superoxide dismutase (Cu‑Zn)
RA	1,724,285	G→C	6.9%	A124G (GCT→GGT)	sodC ←	superoxide dismutase (Cu‑Zn)
RA	1,724,287	T→G	6.3%	K123N (AAA→AAC) ‡	sodC ←	superoxide dismutase (Cu‑Zn)
RA	1,724,288	T→A	6.6%	K123I (AAA→ATA) ‡	sodC ←	superoxide dismutase (Cu‑Zn)
RA	1,724,610	C→T	11.7%	G16S (GGC→AGC)	sodC ←	superoxide dismutase (Cu‑Zn)
RA	1,724,616	C→T	16.5%	A14T (GCA→ACA)	sodC ←	superoxide dismutase (Cu‑Zn)
RA	1,724,617	A→T	12.6%	V13V (GTT→GTA) ‡	sodC ←	superoxide dismutase (Cu‑Zn)
RA	1,724,618	A→G	12.6%	V13A (GTT→GCT) ‡	sodC ←	superoxide dismutase (Cu‑Zn)
RA	1,724,624	A→G	12.3%	L11P (CTG→CCG)	sodC ←	superoxide dismutase (Cu‑Zn)
RA	1,737,434	A→C	8.0%	intergenic (‑144/+22)	ydhP ← / ← ynhF	putative transporter YdhP/stress response membrane protein YnhF
RA	1,737,435	A→G	7.7%	intergenic (‑145/+21)	ydhP ← / ← ynhF	putative transporter YdhP/stress response membrane protein YnhF
RA	1,737,438	C→T	7.9%	intergenic (‑148/+18)	ydhP ← / ← ynhF	putative transporter YdhP/stress response membrane protein YnhF
RA	1,737,439	G→T	7.9%	intergenic (‑149/+17)	ydhP ← / ← ynhF	putative transporter YdhP/stress response membrane protein YnhF
RA	1,740,110	G→A	6.7%	R67H (CGT→CAT)	ydhC →	putative transporter YdhC
RA	1,740,112	T→A	7.2%	Y68N (TAT→AAT) ‡	ydhC →	putative transporter YdhC
RA	1,740,114	T→C	6.7%	Y68Y (TAT→TAC) ‡	ydhC →	putative transporter YdhC
RA	1,757,688	T→A	7.8%	intergenic (+31/+33)	lpp → / ← ldtE	murein lipoprotein/L,D‑transpeptidase LdtE
RA	1,764,687	T→C	7.1%	intergenic (‑301/+26)	sufA ← / ← rydB	iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB
RA	1,764,693	C→T	7.2%	intergenic (‑307/+20)	sufA ← / ← rydB	iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB
RA	1,764,694	G→C	7.2%	intergenic (‑308/+19)	sufA ← / ← rydB	iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB
RA	1,764,695	A→G	7.4%	intergenic (‑309/+18)	sufA ← / ← rydB	iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB
RA	1,764,701	G→A	8.8%	intergenic (‑315/+12)	sufA ← / ← rydB	iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB
RA	1,788,336	A→T	5.3%	intergenic (+58/‑99)	ppsR → / → aroH	posphoenolpyruvate synthetase regulatory protein/3‑deoxy‑7‑phosphoheptulonate synthase, Trp‑sensitive
RA	1,789,082	G→T	6.0%	Q216H (CAG→CAT)	aroH →	3‑deoxy‑7‑phosphoheptulonate synthase, Trp‑sensitive
RA	1,789,083	A→C	5.9%	M217L (ATG→CTG)	aroH →	3‑deoxy‑7‑phosphoheptulonate synthase, Trp‑sensitive
RA	1,792,240	T→A	11.3%	intergenic (‑220/+27)	ydiV ← / ← nlpC	anti‑FlhDC factor/NlpC/P60 family lipoprotein NlpC
RA	1,792,241	A→T	10.5%	intergenic (‑221/+26)	ydiV ← / ← nlpC	anti‑FlhDC factor/NlpC/P60 family lipoprotein NlpC
RA	1,792,242	T→A	10.4%	intergenic (‑222/+25)	ydiV ← / ← nlpC	anti‑FlhDC factor/NlpC/P60 family lipoprotein NlpC
RA	1,795,227	A→T	6.7%	intergenic (‑75/+26)	btuC ← / ← ihfA	vitamin B12 ABC transporter membrane subunit/integration host factor subunit alpha
RA	1,795,228	G→C	6.7%	intergenic (‑76/+25)	btuC ← / ← ihfA	vitamin B12 ABC transporter membrane subunit/integration host factor subunit alpha
RA	1,795,229	A→T	6.7%	intergenic (‑77/+24)	btuC ← / ← ihfA	vitamin B12 ABC transporter membrane subunit/integration host factor subunit alpha
RA	1,797,368	C→A	7.4%	V193F (GTT→TTT)	pheT ←	phenylalanine‑‑tRNA ligase subunit beta
RA	1,797,369	G→T	7.5%	I192I (ATC→ATA) ‡	pheT ←	phenylalanine‑‑tRNA ligase subunit beta
RA	1,797,370	A→C	7.4%	I192S (ATC→AGC) ‡	pheT ←	phenylalanine‑‑tRNA ligase subunit beta
RA	1,797,371	T→G	7.3%	I192L (ATC→CTC) ‡	pheT ←	phenylalanine‑‑tRNA ligase subunit beta
RA	1,797,388	G→T	6.9%	P186Q (CCG→CAG)	pheT ←	phenylalanine‑‑tRNA ligase subunit beta
RA	1,797,391	A→C	6.2%	L185R (CTG→CGG)	pheT ←	phenylalanine‑‑tRNA ligase subunit beta
RA	1,807,316	G→A	6.4%	intergenic (+17/‑84)	pfkB → / → ydiZ	6‑phosphofructokinase II/protein YdiZ
RA	1,807,317	C→T	7.3%	intergenic (+18/‑83)	pfkB → / → ydiZ	6‑phosphofructokinase II/protein YdiZ
RA	1,807,318	A→G	6.4%	intergenic (+19/‑82)	pfkB → / → ydiZ	6‑phosphofructokinase II/protein YdiZ
RA	1,807,319	T→C	6.4%	intergenic (+20/‑81)	pfkB → / → ydiZ	6‑phosphofructokinase II/protein YdiZ
RA	1,808,680	T→A	6.9%	intergenic (+24/+17)	yniA → / ← yniB	putative kinase YniA/uncharacterized protein YniB
RA	1,808,682	C→G	7.3%	intergenic (+26/+15)	yniA → / ← yniB	putative kinase YniA/uncharacterized protein YniB
RA	1,808,684	T→A	7.1%	intergenic (+28/+13)	yniA → / ← yniB	putative kinase YniA/uncharacterized protein YniB
RA	1,811,688	C→A	5.9%	S252Y (TCT→TAT)	tcyP →	cystine/sulfocysteine:cation symporter
RA	1,814,742	C→G	6.7%	H292Q (CAC→CAG)	katE →	catalase II
RA	1,816,192	G→A	6.5%	intergenic (+64/+194)	katE → / ← chbG	catalase II/chitin disaccharide deacetylase
RA	1,816,193	C→A	6.5%	intergenic (+65/+193)	katE → / ← chbG	catalase II/chitin disaccharide deacetylase
RA	1,816,199	G→T	6.4%	intergenic (+71/+187)	katE → / ← chbG	catalase II/chitin disaccharide deacetylase
RA	1,816,200	A→C	6.3%	intergenic (+72/+186)	katE → / ← chbG	catalase II/chitin disaccharide deacetylase
RA	1,816,206	T→G	6.4%	intergenic (+78/+180)	katE → / ← chbG	catalase II/chitin disaccharide deacetylase
RA	1,816,207	T→C	6.4%	intergenic (+79/+179)	katE → / ← chbG	catalase II/chitin disaccharide deacetylase
RA	1,821,241	T→A	5.0%	intergenic (‑27/+58)	chbC ← / ← chbB	N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component/N,N'‑diacetylchitobiose‑specific PTS enzyme IIB component
RA	1,821,244	A→T	5.0%	intergenic (‑30/+55)	chbC ← / ← chbB	N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component/N,N'‑diacetylchitobiose‑specific PTS enzyme IIB component
RA	1,822,071	G→A	7.2%	I62I (ATC→ATT) ‡	osmE ←	osmotically‑inducible lipoprotein OsmE
RA	1,822,072	A→T	7.0%	I62N (ATC→AAC) ‡	osmE ←	osmotically‑inducible lipoprotein OsmE
RA	1,822,073	T→C	7.0%	I62V (ATC→GTC) ‡	osmE ←	osmotically‑inducible lipoprotein OsmE
RA	1,823,335	G→C	9.0%	intergenic (+50/‑180)	nadE → / → cho	NAD synthetase, NH3‑dependent/endonuclease of nucleotide excision repair
RA	1,823,338	G→C	9.4%	intergenic (+53/‑177)	nadE → / → cho	NAD synthetase, NH3‑dependent/endonuclease of nucleotide excision repair
RA	1,827,811	T→G	8.5%	K150T (AAA→ACA)	astB ←	N‑succinylarginine dihydrolase
RA	1,827,816	C→A	8.5%	L148L (CTG→CTT)	astB ←	N‑succinylarginine dihydrolase
RA	1,829,322	A→C	9.6%	L138R (CTG→CGG)	astD ←	aldehyde dehydrogenase
RA	1,829,328	C→G	9.9%	G136A (GGC→GCC)	astD ←	aldehyde dehydrogenase
RA	1,829,334	G→T	8.7%	P134Q (CCG→CAG)	astD ←	aldehyde dehydrogenase
RA	1,839,619	T→A	5.1%	Y51* (TAT→TAA)	ynjE →	molybdopterin synthase sulfurtransferase
RA	1,840,795	G→A	10.9%	L203L (CTC→CTT)	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,798	C→T	11.0%	S202S (TCG→TCA) ‡	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,799	G→C	11.1%	S202W (TCG→TGG) ‡	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,800	A→G	11.1%	S202P (TCG→CCG) ‡	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,803	T→C	11.6%	K201E (AAG→GAG)	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,846,253	A→T	5.1%	F236L (TTT→TTA) ‡	topB ←	DNA topoisomerase III
RA	1,846,254	A→T	5.1%	F236Y (TTT→TAT) ‡	topB ←	DNA topoisomerase III
RA	1,850,715	Δ1 bp	5.3%	intergenic (+22/‑145)	sppA → / → ansA	protease IV, a signal peptide peptidase/L‑asparaginase 1
RA	1,850,719:1	+T	5.1%	intergenic (+26/‑141)	sppA → / → ansA	protease IV, a signal peptide peptidase/L‑asparaginase 1
RA	1,852,038	A→C	6.2%	Q51P (CAG→CCG) ‡	pncA →	nicotinamidase
RA	1,852,039	G→T	6.2%	Q51H (CAG→CAT) ‡	pncA →	nicotinamidase
RA	1,856,333	T→G	6.1%	E199A (GAG→GCG) ‡	ydjH ←	putative sugar kinase YdjH
RA	1,856,334	C→A	6.2%	E199* (GAG→TAG) ‡	ydjH ←	putative sugar kinase YdjH
RA	1,861,428	G→T	5.5%	intergenic (‑96/+274)	ydjL ← / ← yeaC	putative zinc‑binding dehydrogenase YdjL/conserved protein YeaC
RA	1,863,800	T→C	8.0%	intergenic (+34/‑50)	gapA → / → yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/putative aldose 1‑epimerase YeaD
RA	1,863,801	T→G	8.0%	intergenic (+35/‑49)	gapA → / → yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/putative aldose 1‑epimerase YeaD
RA	1,863,802	C→A	8.2%	intergenic (+36/‑48)	gapA → / → yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/putative aldose 1‑epimerase YeaD
RA	1,863,803	G→A	8.2%	intergenic (+37/‑47)	gapA → / → yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/putative aldose 1‑epimerase YeaD
RA	1,864,758	G→A	8.2%	intergenic (+24/+24)	yeaD → / ← yeaE	putative aldose 1‑epimerase YeaD/methylglyoxal reductase YeaE
RA	1,864,763	A→T	9.0%	intergenic (+29/+19)	yeaD → / ← yeaE	putative aldose 1‑epimerase YeaD/methylglyoxal reductase YeaE
RA	1,864,768	T→C	8.6%	intergenic (+34/+14)	yeaD → / ← yeaE	putative aldose 1‑epimerase YeaD/methylglyoxal reductase YeaE
RA	1,868,859	Δ1 bp	8.6%	intergenic (+17/‑96)	yeaG → / → yeaH	protein kinase YeaG/DUF444 domain‑containing protein YeaH
RA	1,868,865:1	+G	8.2%	intergenic (+23/‑90)	yeaG → / → yeaH	protein kinase YeaG/DUF444 domain‑containing protein YeaH
RA	1,880,851	T→A	9.7%	intergenic (‑92/+35)	leuE ← / ← dmlR	leucine exporter/DNA‑binding transcriptional regulator DmlR
RA	1,880,852	T→A	9.8%	intergenic (‑93/+34)	leuE ← / ← dmlR	leucine exporter/DNA‑binding transcriptional regulator DmlR
RA	1,883,027	C→G	5.9%	intergenic (+30/‑161)	dmlA → / → yeaV	D‑malate/3‑isopropylmalate dehydrogenase (decarboxylating)/putative transporter YeaV
RA	1,885,805	T→A	9.4%	intergenic (+16/‑40)	yeaW → / → yeaX	carnitine monooxygenase subunit YeaW/carnitine monooxygenase subunit YeaX
RA	1,885,807	T→A	8.7%	intergenic (+18/‑38)	yeaW → / → yeaX	carnitine monooxygenase subunit YeaW/carnitine monooxygenase subunit YeaX
RA	1,885,808	T→A	8.7%	intergenic (+19/‑37)	yeaW → / → yeaX	carnitine monooxygenase subunit YeaW/carnitine monooxygenase subunit YeaX
RA	1,885,810	T→A	8.7%	intergenic (+21/‑35)	yeaW → / → yeaX	carnitine monooxygenase subunit YeaW/carnitine monooxygenase subunit YeaX
RA	1,888,030	A→T	6.2%	intergenic (‑39/+31)	rnd ← / ← fadD	RNase D/fatty acyl‑CoA synthetase
RA	1,888,032	T→A	6.6%	intergenic (‑41/+29)	rnd ← / ← fadD	RNase D/fatty acyl‑CoA synthetase
RA	1,888,034	A→T	6.1%	intergenic (‑43/+27)	rnd ← / ← fadD	RNase D/fatty acyl‑CoA synthetase
RA	1,889,915	A→C	5.7%	intergenic (‑169/+36)	fadD ← / ← yeaY	fatty acyl‑CoA synthetase/Slp family lipoprotein YeaY
RA	1,889,916	C→T	5.7%	intergenic (‑170/+35)	fadD ← / ← yeaY	fatty acyl‑CoA synthetase/Slp family lipoprotein YeaY
RA	1,889,917	C→G	5.8%	intergenic (‑171/+34)	fadD ← / ← yeaY	fatty acyl‑CoA synthetase/Slp family lipoprotein YeaY
RA	1,889,918	A→G	5.8%	intergenic (‑172/+33)	fadD ← / ← yeaY	fatty acyl‑CoA synthetase/Slp family lipoprotein YeaY
RA	1,889,919	G→T	5.6%	intergenic (‑173/+32)	fadD ← / ← yeaY	fatty acyl‑CoA synthetase/Slp family lipoprotein YeaY
RA	1,891,841	A→G	6.2%	G465G (GGT→GGC) ‡	yoaA ←	putative 5' to 3' DNA helicase implicated in DNA repair
RA	1,891,842	C→T	6.2%	G465D (GGT→GAT) ‡	yoaA ←	putative 5' to 3' DNA helicase implicated in DNA repair
RA	1,892,358	C→T	6.2%	G293D (GGT→GAT)	yoaA ←	putative 5' to 3' DNA helicase implicated in DNA repair
RA	1,892,363	A→G	6.2%	Y291Y (TAT→TAC)	yoaA ←	putative 5' to 3' DNA helicase implicated in DNA repair
RA	1,897,780	T→C	5.9%	T283T (ACT→ACC)	sdaA →	L‑serine deaminase I
RA	1,898,316	T→C	6.0%	intergenic (+20/‑111)	sdaA → / → pdeD	L‑serine deaminase I/putative c‑di‑GMP phosphodiesterase PdeD
RA	1,898,318	C→T	6.0%	intergenic (+22/‑109)	sdaA → / → pdeD	L‑serine deaminase I/putative c‑di‑GMP phosphodiesterase PdeD
RA	1,898,319	A→T	6.0%	intergenic (+23/‑108)	sdaA → / → pdeD	L‑serine deaminase I/putative c‑di‑GMP phosphodiesterase PdeD
RA	1,898,320	A→G	6.2%	intergenic (+24/‑107)	sdaA → / → pdeD	L‑serine deaminase I/putative c‑di‑GMP phosphodiesterase PdeD
RA	1,898,322	G→A	6.2%	intergenic (+26/‑105)	sdaA → / → pdeD	L‑serine deaminase I/putative c‑di‑GMP phosphodiesterase PdeD
RA	1,901,790	A→G	6.6%	intergenic (‑8/‑258)	yoaL ← / → manX	protein YoaL/mannose‑specific PTS enzyme IIAB component
RA	1,901,793	C→T	6.7%	intergenic (‑11/‑255)	yoaL ← / → manX	protein YoaL/mannose‑specific PTS enzyme IIAB component
RA	1,910,363	C→A	6.3%	L30I (CTT→ATT)	yebQ →	putative transporter YebQ
RA	1,915,455	G→C	7.4%	A27G (GCG→GGG)	proQ ←	RNA chaperone ProQ
RA	1,926,882	C→A	10.5%	G653V (GGC→GTC)	ptrB ←	oligopeptidase B
RA	1,926,888	C→A	10.1%	G651V (GGC→GTC)	ptrB ←	oligopeptidase B
RA	1,926,891	G→C	10.6%	S650* (TCA→TGA)	ptrB ←	oligopeptidase B
RA	1,926,894	T→G	10.9%	D649A (GAC→GCC)	ptrB ←	oligopeptidase B
RA	1,926,900	T→G	10.9%	D647A (GAC→GCC)	ptrB ←	oligopeptidase B
RA	1,928,799	A→C	6.2%	L14R (CTT→CGT)	ptrB ←	oligopeptidase B
RA	1,928,802	G→T	5.6%	T13K (ACG→AAG)	ptrB ←	oligopeptidase B
RA	1,940,282	T→G	8.7%	intergenic (‑89/+31)	lpxM ← / ← mepM	myristoyl‑acyl carrier protein‑dependent acyltransferase/peptidoglycan DD‑endopeptidase MepM
RA	1,940,283	G→C	8.3%	intergenic (‑90/+30)	lpxM ← / ← mepM	myristoyl‑acyl carrier protein‑dependent acyltransferase/peptidoglycan DD‑endopeptidase MepM
RA	1,940,285	C→G	8.6%	intergenic (‑92/+28)	lpxM ← / ← mepM	myristoyl‑acyl carrier protein‑dependent acyltransferase/peptidoglycan DD‑endopeptidase MepM
RA	1,940,287	G→C	9.5%	intergenic (‑94/+26)	lpxM ← / ← mepM	myristoyl‑acyl carrier protein‑dependent acyltransferase/peptidoglycan DD‑endopeptidase MepM
RA	1,940,288	C→A	8.9%	intergenic (‑95/+25)	lpxM ← / ← mepM	myristoyl‑acyl carrier protein‑dependent acyltransferase/peptidoglycan DD‑endopeptidase MepM
RA	1,944,226	G→A	8.1%	intergenic (+27/+120)	znuB → / ← ruvB	Zn(2(+)) ABC transporter membrane subunit/Holliday junction branch migration complex subunit RuvB
RA	1,944,227	C→A	8.1%	intergenic (+28/+119)	znuB → / ← ruvB	Zn(2(+)) ABC transporter membrane subunit/Holliday junction branch migration complex subunit RuvB
RA	1,944,233	G→T	8.1%	intergenic (+34/+113)	znuB → / ← ruvB	Zn(2(+)) ABC transporter membrane subunit/Holliday junction branch migration complex subunit RuvB
RA	1,944,234	A→C	8.1%	intergenic (+35/+112)	znuB → / ← ruvB	Zn(2(+)) ABC transporter membrane subunit/Holliday junction branch migration complex subunit RuvB
RA	1,944,240	T→G	7.8%	intergenic (+41/+106)	znuB → / ← ruvB	Zn(2(+)) ABC transporter membrane subunit/Holliday junction branch migration complex subunit RuvB
RA	1,944,241	T→C	7.8%	intergenic (+42/+105)	znuB → / ← ruvB	Zn(2(+)) ABC transporter membrane subunit/Holliday junction branch migration complex subunit RuvB
RA	1,946,035	G→T	13.2%	intergenic (‑59/+80)	ruvA ← / ← yobI	Holliday junction branch migration complex subunit RuvA/uncharacterized protein YobI
RA	1,946,036	A→C	11.9%	intergenic (‑60/+79)	ruvA ← / ← yobI	Holliday junction branch migration complex subunit RuvA/uncharacterized protein YobI
RA	1,948,179	T→A	10.4%	intergenic (‑28/+1)	yebC ← / ← nudB	putative transcriptional regulator YebC/dihydroneopterin triphosphate diphosphatase
RA	1,948,180	T→A	11.2%	*151C (TGA→TGT)	nudB ←	dihydroneopterin triphosphate diphosphatase
RA	1,950,292	C→G	10.3%	A77A (GCG→GCC)	aspS ←	aspartate‑‑tRNA ligase
RA	1,950,295:1	+C	9.2%	coding (228/1773 nt)	aspS ←	aspartate‑‑tRNA ligase
RA	1,950,301	Δ1 bp	10.5%	coding (222/1773 nt)	aspS ←	aspartate‑‑tRNA ligase
RA	1,950,306	C→G	10.8%	G73R (GGC→CGC)	aspS ←	aspartate‑‑tRNA ligase
RA	1,950,954	Δ1 bp	6.2%	coding (123/567 nt)	yecD →	putative hydrolase
RA	1,950,965:1	+C	6.3%	coding (134/567 nt)	yecD →	putative hydrolase
RA	1,954,256	T→A	6.2%	I272N (ATT→AAT)	cmoB →	tRNA U34 carboxymethyltransferase
RA	1,954,996	T→A	5.2%	Q671L (CAG→CTG)	torZ ←	trimethylamine N‑oxide reductase 2
RA	1,965,904	A→G	8.6%	I96I (ATT→ATC)	flhB ←	flagellar biosynthesis protein FlhB
RA	1,965,907	C→T	8.6%	L95L (CTG→CTA)	flhB ←	flagellar biosynthesis protein FlhB
RA	1,966,360	A→G	6.5%	intergenic (‑169/+33)	flhB ← / ← cheZ	flagellar biosynthesis protein FlhB/chemotaxis protein CheZ
RA	1,966,363	A→G	6.5%	intergenic (‑172/+30)	flhB ← / ← cheZ	flagellar biosynthesis protein FlhB/chemotaxis protein CheZ
RA	1,966,368	G→A	6.5%	intergenic (‑177/+25)	flhB ← / ← cheZ	flagellar biosynthesis protein FlhB/chemotaxis protein CheZ
RA	1,966,369	T→C	6.5%	intergenic (‑178/+24)	flhB ← / ← cheZ	flagellar biosynthesis protein FlhB/chemotaxis protein CheZ
RA	1,966,374	C→T	6.2%	intergenic (‑183/+19)	flhB ← / ← cheZ	flagellar biosynthesis protein FlhB/chemotaxis protein CheZ
RA	1,971,920	G→T	15.7%	Q258K (CAA→AAA)	tar ←	methyl‑accepting chemotaxis protein Tar
RA	1,971,923	T→C	14.7%	M257V (ATG→GTG)	tar ←	methyl‑accepting chemotaxis protein Tar
RA	1,971,926	G→A	15.2%	H256Y (CAT→TAT)	tar ←	methyl‑accepting chemotaxis protein Tar
RA	1,971,929	A→C	13.4%	S255A (TCA→GCA)	tar ←	methyl‑accepting chemotaxis protein Tar
RA	1,977,223:1	+A	9.4%	intergenic (‑84/+43)	motA ← / ← flhC	motility protein A/DNA‑binding transcriptional dual regulator FlhC
RA	1,977,227	T→A	8.9%	intergenic (‑88/+39)	motA ← / ← flhC	motility protein A/DNA‑binding transcriptional dual regulator FlhC
RA	1,977,230	Δ1 bp	10.0%	intergenic (‑91/+36)	motA ← / ← flhC	motility protein A/DNA‑binding transcriptional dual regulator FlhC
MC JC	1,978,503	Δ776 bp	100%		insB‑5–insA‑5	insB‑5, insA‑5
JC JC	1,979,486	IS5 (+) +4 bp	93.5%	intergenic (‑271/‑264)	insA‑5 ← / → uspC	IS1 protein InsA/universal stress protein C
RA	1,980,103:1	+C	9.6%	coding (351/429 nt)	uspC →	universal stress protein C
RA	1,980,110	T→G	9.7%	S120A (TCC→GCC) ‡	uspC →	universal stress protein C
RA	1,980,111	C→G	9.4%	S120C (TCC→TGC) ‡	uspC →	universal stress protein C
RA	1,980,112	C→A	10.5%	S120S (TCC→TCA) ‡	uspC →	universal stress protein C
RA	1,980,118	Δ1 bp	7.0%	coding (366/429 nt)	uspC →	universal stress protein C
RA	1,982,500	T→C	5.9%	intergenic (‑113/+54)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,982,501	T→C	5.9%	intergenic (‑114/+53)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,982,504	G→A	6.0%	intergenic (‑117/+50)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,982,505	G→A	6.0%	intergenic (‑118/+49)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,985,112	C→G	11.0%	intergenic (‑43/+27)	araG ← / ← araF	arabinose ABC transporter ATP binding subunit/arabinose ABC transporter periplasmic binding protein
RA	1,987,450:1	+A	5.7%	intergenic (+22/+57)	ftnB → / ← yecJ	putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ
RA	1,987,857	C→T	11.9%	intergenic (‑99/+16)	yecJ ← / ← azuC	DUF2766 domain‑containing protein YecJ/uncharacterized protein AzuC
RA	1,987,858	G→C	11.7%	intergenic (‑100/+15)	yecJ ← / ← azuC	DUF2766 domain‑containing protein YecJ/uncharacterized protein AzuC
RA	1,987,859	G→C	12.0%	intergenic (‑101/+14)	yecJ ← / ← azuC	DUF2766 domain‑containing protein YecJ/uncharacterized protein AzuC
RA	1,987,860	A→G	12.0%	intergenic (‑102/+13)	yecJ ← / ← azuC	DUF2766 domain‑containing protein YecJ/uncharacterized protein AzuC
RA	1,990,922	C→T	7.6%	intergenic (+30/+32)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,990,926	A→C	7.5%	intergenic (+34/+28)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,990,927	A→G	7.4%	intergenic (+35/+27)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,990,932	C→T	7.4%	intergenic (+40/+22)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,990,933	G→T	7.4%	intergenic (+41/+21)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,990,937	A→G	7.4%	intergenic (+45/+17)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,992,083	G→C	6.0%	noncoding (35/76 nt)	glyW ←	tRNA‑Gly
RA	1,996,734	C→T	5.1%	Q33Q (CAG→CAA) ‡	sdiA ←	DNA‑binding transcriptional dual regulator SdiA
RA	1,996,736	G→C	5.1%	Q33E (CAG→GAG) ‡	sdiA ←	DNA‑binding transcriptional dual regulator SdiA
RA	2,001,989	T→G	5.4%	intergenic (‑200/+121)	fliA ← / ← fliC	RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein
RA	2,001,990	T→C	5.3%	intergenic (‑201/+120)	fliA ← / ← fliC	RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein
RA	2,008,814	G→C	6.0%	V180L (GTT→CTT)	yedE →	putative selenium transporter YedE
RA	2,009,731	A→G	7.1%	intergenic (+19/‑90)	yedF → / → yedK	putative sulfurtransferase YedF/putative SOS response‑associated peptidase YedK
RA	2,009,732	C→G	7.3%	intergenic (+20/‑89)	yedF → / → yedK	putative sulfurtransferase YedF/putative SOS response‑associated peptidase YedK
RA	2,009,733	C→T	7.3%	intergenic (+21/‑88)	yedF → / → yedK	putative sulfurtransferase YedF/putative SOS response‑associated peptidase YedK
RA	2,012,854	G→A	5.7%	T54M (ACG→ATG) ‡	fliE ←	flagellar basal‑body protein FliE
RA	2,012,855	T→C	5.7%	T54A (ACG→GCG) ‡	fliE ←	flagellar basal‑body protein FliE
RA	2,024,609	T→G	7.1%	intergenic (+18/+26)	rcsA → / ← dsrB	DNA‑binding transcriptional activator RcsA/protein DsrB
RA	2,024,612	C→A	6.4%	intergenic (+21/+23)	rcsA → / ← dsrB	DNA‑binding transcriptional activator RcsA/protein DsrB
RA	2,028,158	G→C	6.2%	intergenic (‑141/+30)	dgcQ ← / ← yodC	putative diguanylate cyclase DgcQ/protein YodC
RA	2,028,159	T→A	6.3%	intergenic (‑142/+29)	dgcQ ← / ← yodC	putative diguanylate cyclase DgcQ/protein YodC
RA	2,028,160	G→C	6.8%	intergenic (‑143/+28)	dgcQ ← / ← yodC	putative diguanylate cyclase DgcQ/protein YodC
RA	2,032,336	G→C	10.3%	intergenic (‑19/+48)	dcm ← / ← yedJ	DNA‑cytosine methyltransferase/putative HD superfamily phosphohydrolase YedJ
RA	2,041,159	G→A	8.3%	intergenic (+41/‑216)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,041,160	T→G	8.3%	intergenic (+42/‑215)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,041,166	G→T	9.7%	intergenic (+48/‑209)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,041,167	A→C	10.0%	intergenic (+49/‑208)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,041,173	C→A	10.4%	intergenic (+55/‑202)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,041,174	T→C	9.6%	intergenic (+56/‑201)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,044,721	G→A	7.0%	intergenic (+97/‑217)	asnT → / → yeeJ	tRNA‑Asn/inverse autotransporter adhesin
RA	2,044,725	T→A	6.9%	intergenic (+101/‑213)	asnT → / → yeeJ	tRNA‑Asn/inverse autotransporter adhesin
RA	2,044,727	T→A	6.9%	intergenic (+103/‑211)	asnT → / → yeeJ	tRNA‑Asn/inverse autotransporter adhesin
RA	2,044,729	T→A	6.6%	intergenic (+105/‑209)	asnT → / → yeeJ	tRNA‑Asn/inverse autotransporter adhesin
RA	2,044,733	T→C	7.2%	intergenic (+109/‑205)	asnT → / → yeeJ	tRNA‑Asn/inverse autotransporter adhesin
RA	2,055,844	G→T	5.8%	A262S (GCA→TCA) ‡	amn →	AMP nucleosidase
RA	2,055,845	C→G	6.0%	A262G (GCA→GGA) ‡	amn →	AMP nucleosidase
RA	2,055,846	A→C	6.0%	A262A (GCA→GCC) ‡	amn →	AMP nucleosidase
RA	2,056,907	G→T	6.2%	G17V (GGT→GTT)	yeeN →	putative transcriptional regulator YeeN
RA	2,056,912	A→C	6.1%	T19P (ACG→CCG)	yeeN →	putative transcriptional regulator YeeN
RA	2,057,595	T→C	5.3%	intergenic (+21/+432)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,597	T→G	5.3%	intergenic (+23/+430)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,599	T→A	5.3%	intergenic (+25/+428)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,601	C→A	5.5%	intergenic (+27/+426)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,603	G→A	5.3%	intergenic (+29/+424)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,060,265	A→C	5.5%	L217R (CTG→CGG)	cbl ←	DNA‑binding transcriptional activator Cbl
RA	2,060,271	C→G	5.6%	G215A (GGT→GCT) ‡	cbl ←	DNA‑binding transcriptional activator Cbl
RA	2,060,272	C→G	5.5%	G215R (GGT→CGT) ‡	cbl ←	DNA‑binding transcriptional activator Cbl
RA	2,060,278	G→T	5.4%	R213S (CGC→AGC)	cbl ←	DNA‑binding transcriptional activator Cbl
RA	2,062,354	T→A	11.3%	intergenic (+19/+37)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,062,355	T→G	11.0%	intergenic (+20/+36)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,062,356	C→A	11.4%	intergenic (+21/+35)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,062,357	T→A	11.6%	intergenic (+22/+34)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,068,407	A→G	5.2%	intergenic (‑1086/‑228)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,408	T→A	5.2%	intergenic (‑1087/‑227)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,409	G→C	5.3%	intergenic (‑1088/‑226)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,410	T→A	5.3%	intergenic (‑1089/‑225)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,411	C→T	5.2%	intergenic (‑1090/‑224)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,071,485	T→C	8.8%	noncoding (169/195 nt)	isrC →	small RNA IsrC
RA	2,071,490	G→A	8.6%	noncoding (174/195 nt)	isrC →	small RNA IsrC
RA	2,071,491	T→A	9.2%	noncoding (175/195 nt)	isrC →	small RNA IsrC
RA	2,071,492	T→A	9.0%	noncoding (176/195 nt)	isrC →	small RNA IsrC
RA	2,071,493	T→C	9.0%	noncoding (177/195 nt)	isrC →	small RNA IsrC
RA	2,071,498	G→A	10.2%	noncoding (182/195 nt)	isrC →	small RNA IsrC
RA	2,074,691	C→G	6.5%	intergenic (+33/‑88)	flu → / → yeeR	CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter/CP4‑44 prophage; inner membrane protein YeeR
RA	2,074,810	Δ1 bp	5.2%	coding (32/1533 nt)	yeeR →	CP4‑44 prophage; inner membrane protein YeeR
RA	2,074,814:1	+A	5.2%	coding (36/1533 nt)	yeeR →	CP4‑44 prophage; inner membrane protein YeeR
RA	2,078,297	Δ1 bp	5.3%	intergenic (+163/‑278)	yeeW → / → yoeF	CP4‑44 prophage; putative uncharacterized protein YeeW/CP4‑44 prophage; putative uncharacterized protein YoeF
RA	2,078,301	A→T	5.3%	intergenic (+167/‑274)	yeeW → / → yoeF	CP4‑44 prophage; putative uncharacterized protein YeeW/CP4‑44 prophage; putative uncharacterized protein YoeF
RA	2,078,304	A→T	5.3%	intergenic (+170/‑271)	yeeW → / → yoeF	CP4‑44 prophage; putative uncharacterized protein YeeW/CP4‑44 prophage; putative uncharacterized protein YoeF
RA	2,078,306:1	+G	5.4%	intergenic (+172/‑269)	yeeW → / → yoeF	CP4‑44 prophage; putative uncharacterized protein YeeW/CP4‑44 prophage; putative uncharacterized protein YoeF
RA	2,079,004	G→C	7.1%	intergenic (+73/+28)	yoeF → / ← yeeX	CP4‑44 prophage; putative uncharacterized protein YoeF/DUF496 domain‑containing protein YeeX
RA	2,081,057	A→G	10.7%	V69A (GTG→GCG) ‡	sbmC ←	DNA gyrase inhibitor
RA	2,081,058	C→T	10.4%	V69M (GTG→ATG) ‡	sbmC ←	DNA gyrase inhibitor
RA	2,081,349	C→G	8.2%	intergenic (‑87/+32)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,081,353	C→G	8.4%	intergenic (‑91/+28)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,081,354	T→G	9.2%	intergenic (‑92/+27)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,081,355	C→A	8.2%	intergenic (‑93/+26)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,081,356	C→G	8.2%	intergenic (‑94/+25)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,081,360	C→G	8.3%	intergenic (‑98/+21)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,085,662	C→T	7.8%	intergenic (‑137/+42)	yeeE ← / ← plaP	inner membrane protein YeeE/putrescine:H(+) symporter PlaP
RA	2,085,664	A→G	9.0%	intergenic (‑139/+40)	yeeE ← / ← plaP	inner membrane protein YeeE/putrescine:H(+) symporter PlaP
RA	2,085,669	T→A	8.9%	intergenic (‑144/+35)	yeeE ← / ← plaP	inner membrane protein YeeE/putrescine:H(+) symporter PlaP
RA	2,085,670	T→A	8.9%	intergenic (‑145/+34)	yeeE ← / ← plaP	inner membrane protein YeeE/putrescine:H(+) symporter PlaP
RA	2,085,675	C→T	8.8%	intergenic (‑150/+29)	yeeE ← / ← plaP	inner membrane protein YeeE/putrescine:H(+) symporter PlaP
RA	2,085,677	A→G	9.1%	intergenic (‑152/+27)	yeeE ← / ← plaP	inner membrane protein YeeE/putrescine:H(+) symporter PlaP
RA	2,089,854	A→T	6.5%	intergenic (‑141/‑142)	yefM ← / → hisL	YefM antitoxin of the YoeB‑YefM toxin‑antitoxin pair and DNA binding transcriptional repressor/his operon leader peptide
RA	2,090,122	A→G	9.7%	intergenic (+76/‑70)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,090,124	C→G	9.8%	intergenic (+78/‑68)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,090,126	C→T	9.8%	intergenic (+80/‑66)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,099,249	C→T	5.8%	G122D (GGT→GAT)	ugd ←	UDP‑glucose 6‑dehydrogenase
RA	2,099,256	G→T	6.9%	P120T (CCC→ACC)	ugd ←	UDP‑glucose 6‑dehydrogenase
RA	2,099,257	A→T	6.3%	V119V (GTT→GTA) ‡	ugd ←	UDP‑glucose 6‑dehydrogenase
RA	2,099,258	A→C	6.3%	V119G (GTT→GGT) ‡	ugd ←	UDP‑glucose 6‑dehydrogenase
RA	2,103,105	C→A	6.8%	pseudogene (285/446 nt)	wbbL ←	interrupted rhamnosyltransferase WbbL
RA	2,103,106	T→A	6.0%	pseudogene (284/446 nt)	wbbL ←	interrupted rhamnosyltransferase WbbL
RA	2,103,107	T→G	6.1%	pseudogene (283/446 nt)	wbbL ←	interrupted rhamnosyltransferase WbbL
RA	2,106,959	A→T	9.5%	Y90N (TAT→AAT)	wbbH ←	putative O‑antigen polymerase
RA	2,106,960	A→T	9.2%	I89I (ATT→ATA)	wbbH ←	putative O‑antigen polymerase
RA	2,115,847	G→T	11.0%	A17E (GCG→GAG)	wcaM ←	putative colanic acid biosynthesis protein WcaM
RA	2,115,849	C→G	10.4%	S16S (TCG→TCC) ‡	wcaM ←	putative colanic acid biosynthesis protein WcaM
RA	2,115,851	A→C	10.4%	S16A (TCG→GCG) ‡	wcaM ←	putative colanic acid biosynthesis protein WcaM
RA	2,121,583	Δ1 bp	5.2%	intergenic (‑29/+26)	wcaJ ← / ← cpsG	undecaprenyl‑phosphate glucose phosphotransferase/phosphomannomutase
RA	2,121,588:1	+C	5.3%	intergenic (‑34/+21)	wcaJ ← / ← cpsG	undecaprenyl‑phosphate glucose phosphotransferase/phosphomannomutase
RA	2,129,903	T→A	7.3%	N326Y (AAT→TAT)	wcaD ←	putative colanic acid polymerase
RA	2,129,905	T→A	7.2%	D325V (GAC→GTC)	wcaD ←	putative colanic acid polymerase
RA	2,129,907	T→A	7.1%	I324I (ATA→ATT)	wcaD ←	putative colanic acid polymerase
RA	2,132,787	A→C	100%	I204S (ATC→AGC)	wcaA ←	putative colanic acid biosynthesis glycosyl transferase
RA	2,139,709	G→A	8.0%	intergenic (+224/+50)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,139,710	C→A	7.9%	intergenic (+225/+49)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,139,716	T→G	6.9%	intergenic (+231/+43)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,139,718	T→A	6.9%	intergenic (+233/+41)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,139,720	C→A	6.2%	intergenic (+235/+39)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,140,400	G→A	5.0%	R405W (CGG→TGG)	asmA ←	putative assembly protein AsmA
RA	2,140,401	T→C	5.1%	P404P (CCA→CCG)	asmA ←	putative assembly protein AsmA
RA	2,142,505	G→C	6.9%	R148R (CGC→CGG)	udk ←	uridine/cytidine kinase
RA	2,147,478	G→T	5.8%	A21A (GCC→GCA)	alkA ←	DNA‑3‑methyladenine glycosylase 2
RA	2,151,969	T→A	7.4%	R168S (AGA→AGT)	pphC ←	protein‑serine/threonine phosphatase PphC
RA	2,165,143	C→T	9.0%	intergenic (+145/‑46)	baeR → / → yegP	DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP
RA	2,165,146	T→A	7.7%	intergenic (+148/‑43)	baeR → / → yegP	DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP
RA	2,165,147	T→A	7.7%	intergenic (+149/‑42)	baeR → / → yegP	DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP
RA	2,165,150	A→G	7.6%	intergenic (+152/‑39)	baeR → / → yegP	DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP
RA	2,165,264	A→G	7.6%	T26A (ACT→GCT) ‡	yegP →	DUF1508 domain‑containing protein YegP
RA	2,165,265	C→A	7.6%	T26N (ACT→AAT) ‡	yegP →	DUF1508 domain‑containing protein YegP
RA	2,165,268	T→G	7.6%	I27S (ATC→AGC) ‡	yegP →	DUF1508 domain‑containing protein YegP
RA	2,165,269	C→T	7.8%	I27I (ATC→ATT) ‡	yegP →	DUF1508 domain‑containing protein YegP
RA	2,167,914	T→A	5.0%	intergenic (‑94/+75)	yegZ ← / ← yegR	phage protein D/uncharacterized protein YegR
RA	2,168,420	A→T	7.4%	intergenic (‑114/‑292)	yegR ← / → yegS	uncharacterized protein YegR/lipid kinase
RA	2,168,423	A→T	7.7%	intergenic (‑117/‑289)	yegR ← / → yegS	uncharacterized protein YegR/lipid kinase
RA	2,169,657	G→A	6.0%	intergenic (+46/+36)	yegS → / ← gatR	lipid kinase/DNA‑binding transcriptional repressor GatR, N‑terminal fragment
RA	2,169,658	C→A	6.0%	intergenic (+47/+35)	yegS → / ← gatR	lipid kinase/DNA‑binding transcriptional repressor GatR, N‑terminal fragment
RA	2,169,664	A→T	6.5%	intergenic (+53/+29)	yegS → / ← gatR	lipid kinase/DNA‑binding transcriptional repressor GatR, N‑terminal fragment
RA	2,169,665	A→T	6.8%	intergenic (+54/+28)	yegS → / ← gatR	lipid kinase/DNA‑binding transcriptional repressor GatR, N‑terminal fragment
RA	2,169,671	T→G	7.1%	intergenic (+60/+22)	yegS → / ← gatR	lipid kinase/DNA‑binding transcriptional repressor GatR, N‑terminal fragment
RA	2,169,672	T→C	6.9%	intergenic (+61/+21)	yegS → / ← gatR	lipid kinase/DNA‑binding transcriptional repressor GatR, N‑terminal fragment
RA	2,172,350	A→T	9.0%	L175Q (CTG→CAG)	gatD ←	galactitol‑1‑phosphate 5‑dehydrogenase
RA	2,172,353	A→T	9.0%	L174Q (CTG→CAG)	gatD ←	galactitol‑1‑phosphate 5‑dehydrogenase
RA	2,173,361	Δ2 bp	100%	pseudogene (917‑918/1358 nt)	gatC ←	galactitol‑specific PTS enzyme IIC component
RA	2,174,406	A→T	6.9%	I54K (ATA→AAA)	gatB ←	galactitol‑specific PTS enzyme IIB component
RA	2,174,408	C→G	7.6%	L53F (TTG→TTC) ‡	gatB ←	galactitol‑specific PTS enzyme IIB component
RA	2,174,410	A→T	7.7%	L53M (TTG→ATG) ‡	gatB ←	galactitol‑specific PTS enzyme IIB component
RA	2,187,314	C→G	5.6%	intergenic (+16/+66)	rcnB → / ← yehA	periplasmic protein involved in nickel/cobalt export/putative fimbrial adhesin YehA
RA	2,205,650	A→G	5.1%	Q352R (CAG→CGG)	yehL →	putative AAA(+) MoxR family ATPase YehL
RA	2,211,703	C→T	8.5%	intergenic (+17/+23)	yehR → / ← yehS	DUF1307 domain‑containing lipoprotein YehR/conserved protein YehS
RA	2,211,705	C→T	8.4%	intergenic (+19/+21)	yehR → / ← yehS	DUF1307 domain‑containing lipoprotein YehR/conserved protein YehS
RA	2,211,706	T→A	8.4%	intergenic (+20/+20)	yehR → / ← yehS	DUF1307 domain‑containing lipoprotein YehR/conserved protein YehS
RA	2,211,707	A→G	8.1%	intergenic (+21/+19)	yehR → / ← yehS	DUF1307 domain‑containing lipoprotein YehR/conserved protein YehS
RA	2,211,709	A→G	8.1%	intergenic (+23/+17)	yehR → / ← yehS	DUF1307 domain‑containing lipoprotein YehR/conserved protein YehS
RA	2,219,639	G→T	6.2%	intergenic (‑158/+53)	osmF ← / ← bglX	glycine betaine ABC transporter periplasmic binding protein OsmF/beta‑D‑glucoside glucohydrolase, periplasmic
RA	2,242,213	T→C	5.0%	Q252R (CAA→CGA)	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,216	A→C	5.8%	L251R (CTG→CGG) ‡	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,217	G→C	5.7%	L251V (CTG→GTG) ‡	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,218	G→T	5.2%	A250A (GCC→GCA)	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,221	G→A	5.2%	I249I (ATC→ATT)	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,569	A→T	7.6%	N133K (AAT→AAA) ‡	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,571	T→A	7.8%	N133Y (AAT→TAT) ‡	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,573	A→T	7.3%	F132Y (TTT→TAT)	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,247,030	G→A	8.0%	intergenic (‑261/+33)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,247,031	G→A	8.0%	intergenic (‑262/+32)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,247,032	T→C	8.3%	intergenic (‑263/+31)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,247,033	T→C	8.5%	intergenic (‑264/+30)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,252,803	G→A	8.1%	intergenic (+15/+92)	yeiI → / ← nupX	putative sugar kinase YeiI/putative nucleoside transporter
RA	2,252,804	C→A	8.1%	intergenic (+16/+91)	yeiI → / ← nupX	putative sugar kinase YeiI/putative nucleoside transporter
RA	2,252,810	T→G	11.5%	intergenic (+22/+85)	yeiI → / ← nupX	putative sugar kinase YeiI/putative nucleoside transporter
RA	2,252,812	A→T	11.5%	intergenic (+24/+83)	yeiI → / ← nupX	putative sugar kinase YeiI/putative nucleoside transporter
RA	2,252,814	C→A	11.4%	intergenic (+26/+81)	yeiI → / ← nupX	putative sugar kinase YeiI/putative nucleoside transporter
RA	2,252,820	T→G	7.9%	intergenic (+32/+75)	yeiI → / ← nupX	putative sugar kinase YeiI/putative nucleoside transporter
RA	2,252,821	T→C	8.0%	intergenic (+33/+74)	yeiI → / ← nupX	putative sugar kinase YeiI/putative nucleoside transporter
RA	2,259,549	A→T	9.7%	intergenic (‑253/+170)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
RA	2,259,550	A→T	9.8%	intergenic (‑254/+169)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
RA	2,259,553	A→T	9.8%	intergenic (‑257/+166)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
RA	2,259,554	A→T	10.3%	intergenic (‑258/+165)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
RA	2,263,235	C→T	5.5%	W87* (TGG→TGA) ‡	fruB ←	fructose‑specific PTS multiphosphoryl transfer protein FruB
RA	2,263,236	C→G	5.5%	W87S (TGG→TCG) ‡	fruB ←	fructose‑specific PTS multiphosphoryl transfer protein FruB
RA	2,263,237	A→G	5.2%	W87R (TGG→CGG) ‡	fruB ←	fructose‑specific PTS multiphosphoryl transfer protein FruB
RA	2,267,734	T→C	7.7%	intergenic (+23/‑95)	yeiQ → / → yeiR	putative dehydrogenase, NAD‑dependent/zinc‑binding GTPase YeiR
RA	2,267,739	C→G	7.7%	intergenic (+28/‑90)	yeiQ → / → yeiR	putative dehydrogenase, NAD‑dependent/zinc‑binding GTPase YeiR
RA	2,267,741	C→G	8.1%	intergenic (+30/‑88)	yeiQ → / → yeiR	putative dehydrogenase, NAD‑dependent/zinc‑binding GTPase YeiR
RA	2,267,743	C→G	8.2%	intergenic (+32/‑86)	yeiQ → / → yeiR	putative dehydrogenase, NAD‑dependent/zinc‑binding GTPase YeiR
RA	2,267,748	G→A	8.3%	intergenic (+37/‑81)	yeiQ → / → yeiR	putative dehydrogenase, NAD‑dependent/zinc‑binding GTPase YeiR
RA	2,268,132	C→G	8.4%	L102V (CTC→GTC) ‡	yeiR →	zinc‑binding GTPase YeiR
RA	2,268,133	T→A	9.5%	L102H (CTC→CAC) ‡	yeiR →	zinc‑binding GTPase YeiR
RA	2,268,134	C→G	8.5%	L102L (CTC→CTG) ‡	yeiR →	zinc‑binding GTPase YeiR
RA	2,270,602	T→C	8.9%	intergenic (+57/‑124)	mepS → / → pdeN	peptidoglycan DD‑endopeptidase/peptidoglycan LD‑carboxypeptidase/putative c‑di‑GMP phosphodiesterase PdeN
RA	2,270,605	G→A	8.6%	intergenic (+60/‑121)	mepS → / → pdeN	peptidoglycan DD‑endopeptidase/peptidoglycan LD‑carboxypeptidase/putative c‑di‑GMP phosphodiesterase PdeN
RA	2,284,790	T→A	6.2%	F139I (TTC→ATC) ‡	yejM →	putative cardiolipin transport protein
RA	2,284,791	T→A	6.4%	F139Y (TTC→TAC) ‡	yejM →	putative cardiolipin transport protein
RA	2,286,139	A→T	10.6%	intergenic (+3/‑72)	yejM → / → proL	putative cardiolipin transport protein/tRNA‑Pro
RA	2,286,142	T→A	11.6%	intergenic (+6/‑69)	yejM → / → proL	putative cardiolipin transport protein/tRNA‑Pro
RA	2,286,145	A→T	10.4%	intergenic (+9/‑66)	yejM → / → proL	putative cardiolipin transport protein/tRNA‑Pro
RA	2,286,311	C→G	11.7%	intergenic (+24/+79)	proL → / ← yejO	tRNA‑Pro/adhesin‑like autotransporter YejO
RA	2,286,313	T→A	11.5%	intergenic (+26/+77)	proL → / ← yejO	tRNA‑Pro/adhesin‑like autotransporter YejO
RA	2,286,315	C→G	12.3%	intergenic (+28/+75)	proL → / ← yejO	tRNA‑Pro/adhesin‑like autotransporter YejO
RA	2,311,616	C→T	5.9%	intergenic (‑82/+30)	ftp ← / ← ompC	FAD:protein FMN transferase/outer membrane porin C
RA	2,311,619	A→G	5.9%	intergenic (‑85/+27)	ftp ← / ← ompC	FAD:protein FMN transferase/outer membrane porin C
RA	2,312,170	G→C	7.2%	L194V (CTG→GTG)	ompC ←	outer membrane porin C
RA	2,313,153	G→A	6.7%	noncoding (70/93 nt)	micF →	small regulatory RNA MicF
RA	2,313,158	C→G	6.9%	noncoding (75/93 nt)	micF →	small regulatory RNA MicF
RA	2,313,159	T→A	7.3%	noncoding (76/93 nt)	micF →	small regulatory RNA MicF
RA	2,313,160	C→G	6.5%	noncoding (77/93 nt)	micF →	small regulatory RNA MicF
RA	2,313,165	T→C	6.6%	noncoding (82/93 nt)	micF →	small regulatory RNA MicF
RA	2,314,800	A→C	8.2%	Q438P (CAG→CCG) ‡	rcsD →	RcsD phosphotransferase
RA	2,314,801	G→T	8.5%	Q438H (CAG→CAT) ‡	rcsD →	RcsD phosphotransferase
RA	2,316,658	T→C	5.6%	L161P (CTG→CCG)	rcsB →	DNA‑binding transcriptional activator RcsB
RA	2,323,286	C→T	5.4%	intergenic (+35/‑161)	atoC → / → atoD	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha
RA	2,325,037:1	+T	9.8%	coding (282/1323 nt)	atoE →	short chain fatty acid transporter
RA	2,325,042	Δ1 bp	9.2%	coding (287/1323 nt)	atoE →	short chain fatty acid transporter
RA	2,326,750	C→G	6.8%	F214L (TTC→TTG)	atoB →	acetyl‑CoA acetyltransferase
RA	2,326,752	G→C	7.1%	S215T (AGT→ACT)	atoB →	acetyl‑CoA acetyltransferase
RA	2,326,754	C→G	7.0%	Q216E (CAA→GAA)	atoB →	acetyl‑CoA acetyltransferase
RA	2,327,313	G→A	5.7%	intergenic (+20/+54)	atoB → / ← yfaP	acetyl‑CoA acetyltransferase/DUF2135 domain‑containing protein YfaP
RA	2,327,315	G→T	5.7%	intergenic (+22/+52)	atoB → / ← yfaP	acetyl‑CoA acetyltransferase/DUF2135 domain‑containing protein YfaP
RA	2,327,317	A→T	5.6%	intergenic (+24/+50)	atoB → / ← yfaP	acetyl‑CoA acetyltransferase/DUF2135 domain‑containing protein YfaP
RA	2,327,318	A→C	5.6%	intergenic (+25/+49)	atoB → / ← yfaP	acetyl‑CoA acetyltransferase/DUF2135 domain‑containing protein YfaP
RA	2,327,320	T→C	5.7%	intergenic (+27/+47)	atoB → / ← yfaP	acetyl‑CoA acetyltransferase/DUF2135 domain‑containing protein YfaP
RA	2,328,969	T→G	5.7%	T277P (ACG→CCG)	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,329,708	A→G	5.6%	G30G (GGT→GGC)	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,356,734	G→C	9.8%	intergenic (+23/‑170)	glpC → / → rpnE	anaerobic glycerol‑3‑phosphate dehydrogenase subunit C/inactive recombination‑promoting nuclease‑like protein RpnE
RA	2,356,737	T→C	10.0%	intergenic (+26/‑167)	glpC → / → rpnE	anaerobic glycerol‑3‑phosphate dehydrogenase subunit C/inactive recombination‑promoting nuclease‑like protein RpnE
RA	2,356,738	G→A	10.0%	intergenic (+27/‑166)	glpC → / → rpnE	anaerobic glycerol‑3‑phosphate dehydrogenase subunit C/inactive recombination‑promoting nuclease‑like protein RpnE
RA	2,356,741	G→C	10.1%	intergenic (+30/‑163)	glpC → / → rpnE	anaerobic glycerol‑3‑phosphate dehydrogenase subunit C/inactive recombination‑promoting nuclease‑like protein RpnE
RA	2,357,653	A→G	9.8%	L250L (CTA→CTG)	rpnE →	inactive recombination‑promoting nuclease‑like protein RpnE
RA	2,357,665	G→A	11.6%	G254G (GGG→GGA)	rpnE →	inactive recombination‑promoting nuclease‑like protein RpnE
JC	2,357,874	Δ12 bp	6.7%	pseudogene (59‑70/186 nt)	ypaA →	protein YpaA
RA	2,364,995	T→G	7.9%	intergenic (+16/+23)	nudI → / ← ais	pyrimidine deoxynucleotide diphosphatase NudI/putative lipopolysaccharide core heptose(II)‑phosphate phosphatase
RA	2,364,998	C→A	7.6%	intergenic (+19/+20)	nudI → / ← ais	pyrimidine deoxynucleotide diphosphatase NudI/putative lipopolysaccharide core heptose(II)‑phosphate phosphatase
RA	2,375,483	A→T	6.0%	L160L (CTT→CTA) ‡	menC ←	o‑succinylbenzoate synthase
RA	2,375,484	A→T	6.3%	L160H (CTT→CAT) ‡	menC ←	o‑succinylbenzoate synthase
RA	2,376,933	C→A	5.2%	L220L (CTG→CTT) ‡	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,935	G→A	5.2%	L220L (CTG→TTG) ‡	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,942	C→G	6.2%	A217A (GCG→GCC)	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,946	A→T	5.8%	L216Q (CTG→CAG)	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,949	G→C	5.9%	A215G (GCC→GGC)	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,957	T→C	5.1%	K212K (AAA→AAG) ‡	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,959	T→G	5.1%	K212Q (AAA→CAA) ‡	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,378,144	C→A	8.5%	L372L (CTG→CTT) ‡	menD ←	2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase
RA	2,378,146	G→C	9.1%	L372V (CTG→GTG) ‡	menD ←	2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase
RA	2,378,148	T→G	9.2%	Q371P (CAA→CCA)	menD ←	2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase
RA	2,378,153	T→A	7.2%	E369D (GAA→GAT)	menD ←	2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase
RA	2,383,956	A→T	5.0%	intergenic (+32/+39)	elaD → / ← yfbK	protease ElaD/IPR002035/DUF3520 domain‑containing protein YfbK
RA	2,390,012	Δ1 bp	5.9%	intergenic (+48/+36)	yfbP → / ← nuoN	uncharacterized protein YfbP/NADH:quinone oxidoreductase subunit N
RA	2,390,016:1	+C	5.8%	intergenic (+52/+32)	yfbP → / ← nuoN	uncharacterized protein YfbP/NADH:quinone oxidoreductase subunit N
RA	2,391,723	A→T	5.7%	L440* (TTA→TAA)	nuoM ←	NADH:quinone oxidoreductase subunit M
RA	2,392,498	C→G	5.9%	G182R (GGC→CGC)	nuoM ←	NADH:quinone oxidoreductase subunit M
RA	2,392,500	C→G	5.7%	S181T (AGT→ACT)	nuoM ←	NADH:quinone oxidoreductase subunit M
RA	2,392,502	C→G	5.6%	A180A (GCG→GCC)	nuoM ←	NADH:quinone oxidoreductase subunit M
RA	2,395,802	A→C	5.0%	L32R (CTG→CGG)	nuoJ ←	NADH:quinone oxidoreductase subunit J
RA	2,395,808:1	+C	5.3%	coding (89/555 nt)	nuoJ ←	NADH:quinone oxidoreductase subunit J
RA	2,395,812	G→C	5.3%	L29V (CTG→GTG)	nuoJ ←	NADH:quinone oxidoreductase subunit J
RA	2,400,191	A→T	13.1%	intergenic (‑26/+27)	nuoG ← / ← nuoF	NADH:quinone oxidoreductase subunit G/NADH:quinone oxidoreductase subunit F
RA	2,400,192	G→C	13.2%	intergenic (‑27/+26)	nuoG ← / ← nuoF	NADH:quinone oxidoreductase subunit G/NADH:quinone oxidoreductase subunit F
RA	2,400,193	A→T	12.1%	intergenic (‑28/+25)	nuoG ← / ← nuoF	NADH:quinone oxidoreductase subunit G/NADH:quinone oxidoreductase subunit F
RA	2,406,376	C→G	9.7%	C89S (TGC→TCC) ‡	lrhA ←	DNA‑binding transcriptional dual regulator LrhA
RA	2,406,377	A→C	9.7%	C89G (TGC→GGC) ‡	lrhA ←	DNA‑binding transcriptional dual regulator LrhA
RA	2,406,378	G→C	9.7%	A88A (GCC→GCG) ‡	lrhA ←	DNA‑binding transcriptional dual regulator LrhA
RA	2,406,379	G→T	9.6%	A88D (GCC→GAC) ‡	lrhA ←	DNA‑binding transcriptional dual regulator LrhA
RA	2,406,380	C→G	9.6%	A88P (GCC→CCC) ‡	lrhA ←	DNA‑binding transcriptional dual regulator LrhA
RA	2,407,890	Δ1 bp	7.6%	coding (330/1218 nt)	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,407,898	A→C	11.8%	Q113P (CAG→CCG) ‡	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,407,899	G→T	11.8%	Q113H (CAG→CAT) ‡	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,407,905:1	+C	11.1%	coding (345/1218 nt)	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,412,639	T→A	8.7%	intergenic (‑45/+38)	yfbU ← / ← yfbV	UPF0304 family protein YfbU/UPF0208 membrane protein YfbV
RA	2,412,640	G→T	9.0%	intergenic (‑46/+37)	yfbU ← / ← yfbV	UPF0304 family protein YfbU/UPF0208 membrane protein YfbV
RA	2,412,642	G→C	8.1%	intergenic (‑48/+35)	yfbU ← / ← yfbV	UPF0304 family protein YfbU/UPF0208 membrane protein YfbV
RA	2,412,644	A→C	8.1%	intergenic (‑50/+33)	yfbU ← / ← yfbV	UPF0304 family protein YfbU/UPF0208 membrane protein YfbV
RA	2,412,645	T→A	8.0%	intergenic (‑51/+32)	yfbU ← / ← yfbV	UPF0304 family protein YfbU/UPF0208 membrane protein YfbV
RA	2,412,914	A→C	5.1%	V73V (GTT→GTG)	yfbV ←	UPF0208 membrane protein YfbV
RA	2,413,004	C→T	5.5%	M43I (ATG→ATA)	yfbV ←	UPF0208 membrane protein YfbV
RA	2,413,008	T→A	5.8%	K42M (AAG→ATG) ‡	yfbV ←	UPF0208 membrane protein YfbV
RA	2,413,009	T→A	5.5%	K42* (AAG→TAG) ‡	yfbV ←	UPF0208 membrane protein YfbV
RA	2,413,013	A→G	5.6%	V40V (GTT→GTC)	yfbV ←	UPF0208 membrane protein YfbV
RA	2,414,689	C→G	9.3%	intergenic (+17/‑58)	ackA → / → pta	acetate kinase/phosphate acetyltransferase
RA	2,415,725	C→A	7.6%	L327M (CTG→ATG)	pta →	phosphate acetyltransferase
RA	2,425,968	T→G	5.4%	intergenic (‑52/+38)	hisQ ← / ← hisJ	lysine/arginine/ornithine ABC transporter/histidine ABC transporter, membrane subunit HisQ/histidine ABC transporter periplasmic binding protein
RA	2,425,971	C→A	5.5%	intergenic (‑55/+35)	hisQ ← / ← hisJ	lysine/arginine/ornithine ABC transporter/histidine ABC transporter, membrane subunit HisQ/histidine ABC transporter periplasmic binding protein
RA	2,428,038	A→T	11.8%	intergenic (‑247/+19)	argT ← / ← ubiX	lysine/arginine/ornithine ABC transporter periplasmic binding protein/flavin prenyltransferase
RA	2,428,039	A→T	11.9%	intergenic (‑248/+18)	argT ← / ← ubiX	lysine/arginine/ornithine ABC transporter periplasmic binding protein/flavin prenyltransferase
RA	2,428,040	A→T	11.7%	intergenic (‑249/+17)	argT ← / ← ubiX	lysine/arginine/ornithine ABC transporter periplasmic binding protein/flavin prenyltransferase
RA	2,430,144	G→C	6.2%	A32G (GCC→GGC)	purF ←	amidophosphoribosyltransferase
RA	2,432,985	A→G	7.2%	intergenic (‑43/+27)	folC ← / ← accD	bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase/acetyl‑CoA carboxyltransferase subunit beta
RA	2,432,990	G→C	6.8%	intergenic (‑48/+22)	folC ← / ← accD	bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase/acetyl‑CoA carboxyltransferase subunit beta
RA	2,434,094	G→A	12.6%	R216R (CGC→CGT)	dedA ←	DedA family protein DedA
RA	2,434,097	T→C	12.9%	A215A (GCA→GCG)	dedA ←	DedA family protein DedA
RA	2,438,862	A→G	6.2%	T305A (ACG→GCG)	flk →	putative flagella assembly protein
RA	2,438,869	A→C	7.4%	Q307P (CAA→CCA)	flk →	putative flagella assembly protein
RA	2,438,871	A→T	7.4%	N308Y (AAT→TAT)	flk →	putative flagella assembly protein
RA	2,438,874	A→T	7.3%	M309L (ATG→TTG) ‡	flk →	putative flagella assembly protein
RA	2,438,876	G→T	8.6%	M309I (ATG→ATT) ‡	flk →	putative flagella assembly protein
RA	2,438,883	C→T	6.0%	R312C (CGT→TGT)	flk →	putative flagella assembly protein
RA	2,440,295	A→T	8.7%	intergenic (‑175/+90)	yfcJ ← / ← fabB	putative transporter YfcJ/beta‑ketoacyl‑[acyl carrier protein] synthase I
RA	2,440,296	T→G	8.6%	intergenic (‑176/+89)	yfcJ ← / ← fabB	putative transporter YfcJ/beta‑ketoacyl‑[acyl carrier protein] synthase I
RA	2,440,297	C→A	8.6%	intergenic (‑177/+88)	yfcJ ← / ← fabB	putative transporter YfcJ/beta‑ketoacyl‑[acyl carrier protein] synthase I
RA	2,440,298	A→T	8.3%	intergenic (‑178/+87)	yfcJ ← / ← fabB	putative transporter YfcJ/beta‑ketoacyl‑[acyl carrier protein] synthase I
RA	2,440,865	C→T	7.4%	L247L (CTG→CTA) ‡	fabB ←	beta‑ketoacyl‑[acyl carrier protein] synthase I
RA	2,440,866	A→G	7.4%	L247P (CTG→CCG) ‡	fabB ←	beta‑ketoacyl‑[acyl carrier protein] synthase I
RA	2,445,973	G→C	6.9%	P138A (CCG→GCG)	mepA ←	peptidoglycan DD‑endopeptidase/peptidoglycan LD‑endopeptidase
RA	2,445,974	G→C	7.0%	R137R (CGC→CGG)	mepA ←	peptidoglycan DD‑endopeptidase/peptidoglycan LD‑endopeptidase
RA	2,449,200	G→A	10.8%	intergenic (+43/+28)	smrB → / ← yfcO	putative endonuclease SmrB/DUF2544 domain‑containing protein YfcO
RA	2,449,201	A→T	10.6%	intergenic (+44/+27)	smrB → / ← yfcO	putative endonuclease SmrB/DUF2544 domain‑containing protein YfcO
RA	2,449,202	A→T	10.5%	intergenic (+45/+26)	smrB → / ← yfcO	putative endonuclease SmrB/DUF2544 domain‑containing protein YfcO
RA	2,449,203	T→C	10.6%	intergenic (+46/+25)	smrB → / ← yfcO	putative endonuclease SmrB/DUF2544 domain‑containing protein YfcO
RA	2,449,607:1	+G	5.7%	coding (443/822 nt)	yfcO ←	DUF2544 domain‑containing protein YfcO
RA	2,449,615	C→G	5.6%	G145G (GGG→GGC) ‡	yfcO ←	DUF2544 domain‑containing protein YfcO
RA	2,449,616	C→G	5.6%	G145A (GGG→GCG) ‡	yfcO ←	DUF2544 domain‑containing protein YfcO
RA	2,449,624	Δ1 bp	5.5%	coding (426/822 nt)	yfcO ←	DUF2544 domain‑containing protein YfcO
RA	2,457,128	T→A	6.8%	M678L (ATG→TTG)	fadJ ←	3‑hydroxyacyl‑CoA dehydrogenase FadJ
RA	2,457,131	T→A	6.8%	I677L (ATA→TTA)	fadJ ←	3‑hydroxyacyl‑CoA dehydrogenase FadJ
RA	2,457,138	C→G	6.7%	V674V (GTG→GTC)	fadJ ←	3‑hydroxyacyl‑CoA dehydrogenase FadJ
RA	2,460,614	C→T	5.2%	intergenic (‑145/+36)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,618	C→T	5.1%	intergenic (‑149/+32)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,619	A→T	5.1%	intergenic (‑150/+31)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,620	A→G	5.2%	intergenic (‑151/+30)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,624	A→G	5.5%	intergenic (‑155/+26)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,462,677	A→T	7.9%	intergenic (+31/‑335)	fadL → / → yfdF	long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF
RA	2,462,678	T→A	8.0%	intergenic (+32/‑334)	fadL → / → yfdF	long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF
RA	2,462,679	A→T	7.7%	intergenic (+33/‑333)	fadL → / → yfdF	long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF
RA	2,470,480	A→T	7.5%	intergenic (+18/+597)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
RA	2,470,481	T→G	7.4%	intergenic (+19/+596)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
RA	2,470,482	C→A	7.9%	intergenic (+20/+595)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
RA	2,470,483	A→T	6.8%	intergenic (+21/+594)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
RA	2,474,878	T→C	6.3%	intergenic (+22/‑106)	yfdQ → / → yfdR	CPS‑53 (KpLE1) prophage; protein YfdQ/CPS‑53 (KpLE1) prophage; 5'‑deoxynucleotidase
RA	2,474,881	G→A	6.8%	intergenic (+25/‑103)	yfdQ → / → yfdR	CPS‑53 (KpLE1) prophage; protein YfdQ/CPS‑53 (KpLE1) prophage; 5'‑deoxynucleotidase
RA	2,483,900	T→A	6.9%	V49D (GTC→GAC)	evgA →	DNA‑binding transcriptional activator EvgA
RA	2,483,906	T→A	7.2%	I51N (ATT→AAT)	evgA →	DNA‑binding transcriptional activator EvgA
RA	2,483,912	T→A	6.7%	V53D (GTC→GAC)	evgA →	DNA‑binding transcriptional activator EvgA
RA	2,491,257	Δ1 bp	5.5%	coding (694/1695 nt)	oxc ←	oxalyl‑CoA decarboxylase
RA	2,491,264	T→A	7.6%	E229D (GAA→GAT) ‡	oxc ←	oxalyl‑CoA decarboxylase
RA	2,491,266	C→G	7.8%	E229Q (GAA→CAA) ‡	oxc ←	oxalyl‑CoA decarboxylase
RA	2,491,268	T→A	7.7%	D228V (GAT→GTT)	oxc ←	oxalyl‑CoA decarboxylase
RA	2,491,274:1	+C	6.5%	coding (677/1695 nt)	oxc ←	oxalyl‑CoA decarboxylase
RA	2,493,563	T→A	5.3%	intergenic (‑309/+204)	frc ← / ← yfdX	formyl‑CoA transferase/protein YfdX
RA	2,496,611	T→A	5.7%	intergenic (+46/‑310)	lpxP → / → ypdK	palmitoleoyl acyltransferase/putative membrane protein YpdK
RA	2,496,612	C→T	5.6%	intergenic (+47/‑309)	lpxP → / → ypdK	palmitoleoyl acyltransferase/putative membrane protein YpdK
RA	2,496,613	A→G	5.6%	intergenic (+48/‑308)	lpxP → / → ypdK	palmitoleoyl acyltransferase/putative membrane protein YpdK
RA	2,496,614	T→A	5.5%	intergenic (+49/‑307)	lpxP → / → ypdK	palmitoleoyl acyltransferase/putative membrane protein YpdK
RA	2,496,619	T→A	5.3%	intergenic (+54/‑302)	lpxP → / → ypdK	palmitoleoyl acyltransferase/putative membrane protein YpdK
RA	2,508,433	Δ1 bp	10.0%	intergenic (‑191/+28)	fryB ← / ← glk	putative PTS enzyme IIB component FryB/glucokinase
RA	2,508,436	T→A	9.6%	intergenic (‑194/+25)	fryB ← / ← glk	putative PTS enzyme IIB component FryB/glucokinase
RA	2,508,438:1	+T	9.8%	intergenic (‑196/+23)	fryB ← / ← glk	putative PTS enzyme IIB component FryB/glucokinase
RA	2,511,417	A→G	5.1%	intergenic (+90/+51)	ypeC → / ← mntH	DUF2502 domain‑containing protein YpeC/Mn(2(+))/Fe(2(+)): H(+) symporter MntH
RA	2,511,418	A→C	5.1%	intergenic (+91/+50)	ypeC → / ← mntH	DUF2502 domain‑containing protein YpeC/Mn(2(+))/Fe(2(+)): H(+) symporter MntH
RA	2,511,424	T→A	5.5%	intergenic (+97/+44)	ypeC → / ← mntH	DUF2502 domain‑containing protein YpeC/Mn(2(+))/Fe(2(+)): H(+) symporter MntH
RA	2,511,425	T→A	5.4%	intergenic (+98/+43)	ypeC → / ← mntH	DUF2502 domain‑containing protein YpeC/Mn(2(+))/Fe(2(+)): H(+) symporter MntH
RA	2,512,728	C→A	10.0%	intergenic (‑22/‑314)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,512,729	T→A	9.9%	intergenic (‑23/‑313)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,512,730	T→A	9.9%	intergenic (‑24/‑312)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,512,731	T→G	9.9%	intergenic (‑25/‑311)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,517,521	T→C	5.4%	L104L (TTA→TTG)	pdeA ←	putative c‑di‑GMP phosphodiesterase PdeA
RA	2,517,528	G→A	5.6%	A102V (GCA→GTA)	pdeA ←	putative c‑di‑GMP phosphodiesterase PdeA
RA	2,517,532	A→T	5.3%	C101S (TGC→AGC)	pdeA ←	putative c‑di‑GMP phosphodiesterase PdeA
RA	2,518,082	C→G	8.1%	noncoding (35/76 nt)	alaX ←	tRNA‑Ala
RA	2,532,268	T→C	5.9%	intergenic (+44/‑141)	cysZ → / → cysK	sulfate:H(+) symporter/O‑acetylserine sulfhydrylase A
RA	2,532,272	T→A	6.0%	intergenic (+48/‑137)	cysZ → / → cysK	sulfate:H(+) symporter/O‑acetylserine sulfhydrylase A
RA	2,532,275	T→A	6.0%	intergenic (+51/‑134)	cysZ → / → cysK	sulfate:H(+) symporter/O‑acetylserine sulfhydrylase A
RA	2,532,279	G→A	6.1%	intergenic (+55/‑130)	cysZ → / → cysK	sulfate:H(+) symporter/O‑acetylserine sulfhydrylase A
RA	2,533,415	T→A	7.6%	intergenic (+35/‑349)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,533,416	T→A	7.4%	intergenic (+36/‑348)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,533,417	T→A	7.5%	intergenic (+37/‑347)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,533,418	T→A	7.5%	intergenic (+38/‑346)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,538,736	C→T	6.0%	G283D (GGC→GAC) ‡	cysM ←	cysteine synthase B
RA	2,538,737	C→G	6.1%	G283R (GGC→CGC) ‡	cysM ←	cysteine synthase B
RA	2,538,738	A→G	7.2%	R282R (CGT→CGC)	cysM ←	cysteine synthase B
RA	2,542,928	C→T	6.0%	A201T (GCG→ACG)	cysP ←	thiosulfate/sulfate ABC transporter periplasmic binding protein CysP
RA	2,542,930	C→G	6.0%	G200A (GGC→GCC)	cysP ←	thiosulfate/sulfate ABC transporter periplasmic binding protein CysP
RA	2,542,932	A→G	6.0%	R199R (CGT→CGC)	cysP ←	thiosulfate/sulfate ABC transporter periplasmic binding protein CysP
RA	2,549,601	T→G	8.4%	intergenic (+195/+45)	yfeW → / ← yfeX	penicillin binding protein 4B/porphyrinogen peroxidase
RA	2,549,608	T→C	7.7%	intergenic (+202/+38)	yfeW → / ← yfeX	penicillin binding protein 4B/porphyrinogen peroxidase
RA	2,549,609	G→A	7.7%	intergenic (+203/+37)	yfeW → / ← yfeX	penicillin binding protein 4B/porphyrinogen peroxidase
RA	2,549,616	C→A	7.4%	intergenic (+210/+30)	yfeW → / ← yfeX	penicillin binding protein 4B/porphyrinogen peroxidase
RA	2,550,574	C→G	12.2%	intergenic (‑29/+67)	yfeX ← / ← yfeY	porphyrinogen peroxidase/DUF1131 domain‑containing lipoprotein YfeY
RA	2,550,576	A→T	12.4%	intergenic (‑31/+65)	yfeX ← / ← yfeY	porphyrinogen peroxidase/DUF1131 domain‑containing lipoprotein YfeY
RA	2,550,578	C→G	12.6%	intergenic (‑33/+63)	yfeX ← / ← yfeY	porphyrinogen peroxidase/DUF1131 domain‑containing lipoprotein YfeY
RA	2,555,201	T→C	6.0%	intergenic (‑19/+27)	eutR ← / ← eutK	putative AraC‑type transcriptional regulator EutR/putative structural protein, ethanolamine utilization microcompartment
RA	2,555,202	G→C	6.0%	intergenic (‑20/+26)	eutR ← / ← eutK	putative AraC‑type transcriptional regulator EutR/putative structural protein, ethanolamine utilization microcompartment
RA	2,555,205	G→C	5.8%	intergenic (‑23/+23)	eutR ← / ← eutK	putative AraC‑type transcriptional regulator EutR/putative structural protein, ethanolamine utilization microcompartment
RA	2,555,206	G→A	5.8%	intergenic (‑24/+22)	eutR ← / ← eutK	putative AraC‑type transcriptional regulator EutR/putative structural protein, ethanolamine utilization microcompartment
RA	2,560,317	A→C	5.4%	N21H (AAT→CAT)	yffL →	CPZ‑55 prophage; uncharacterized protein YffL
RA	2,560,321	C→T	6.3%	A22V (GCT→GTT)	yffL →	CPZ‑55 prophage; uncharacterized protein YffL
RA	2,560,326	A→G	6.1%	T24A (ACA→GCA)	yffL →	CPZ‑55 prophage; uncharacterized protein YffL
RA	2,560,330	G→T	5.9%	C25F (TGC→TTC)	yffL →	CPZ‑55 prophage; uncharacterized protein YffL
RA	2,563,261	T→G	6.3%	intergenic (+144/‑331)	yffP → / → yffQ	CPZ‑55 prophage; uncharacterized protein YffP/CPZ‑55 prophage; uncharacterized protein YffQ
RA	2,566,490	C→T	7.3%	G132D (GGT→GAT)	eutA ←	reactivating factor for ethanolamine ammonia‑lyase EutBC
RA	2,566,493	G→C	7.3%	A131G (GCC→GGC)	eutA ←	reactivating factor for ethanolamine ammonia‑lyase EutBC
RA	2,566,496	A→G	7.4%	I130T (ATC→ACC)	eutA ←	reactivating factor for ethanolamine ammonia‑lyase EutBC
RA	2,579,154	A→C	9.3%	A163A (GCA→GCC)	talA →	transaldolase A
RA	2,579,157	G→T	9.0%	R164R (CGG→CGT)	talA →	transaldolase A
RA	2,582,852	G→C	6.0%	intergenic (‑75/+51)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,582,855	T→C	6.3%	intergenic (‑78/+48)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,582,856	T→A	6.4%	intergenic (‑79/+47)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,582,857	T→A	6.4%	intergenic (‑80/+46)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,582,858	G→A	6.1%	intergenic (‑81/+45)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,582,861	G→C	6.1%	intergenic (‑84/+42)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,585,760	T→A	5.3%	S10R (AGT→AGA)	narQ →	sensory histidine kinase NarQ
RA	2,587,006	A→C	5.2%	T426P (ACG→CCG) ‡	narQ →	sensory histidine kinase NarQ
RA	2,587,007	C→T	5.2%	T426M (ACG→ATG) ‡	narQ →	sensory histidine kinase NarQ
RA	2,587,010	T→A	5.3%	L427Q (CTG→CAG)	narQ →	sensory histidine kinase NarQ
RA	2,587,013	A→G	5.3%	Q428R (CAG→CGG) ‡	narQ →	sensory histidine kinase NarQ
RA	2,587,014	G→T	5.3%	Q428H (CAG→CAT) ‡	narQ →	sensory histidine kinase NarQ
RA	2,590,767	T→C	6.2%	intergenic (+59/+40)	acrD → / ← ypfM	multidrug efflux pump RND permease AcrD/uncharacterized protein YpfM
RA	2,590,771	C→G	6.1%	intergenic (+63/+36)	acrD → / ← ypfM	multidrug efflux pump RND permease AcrD/uncharacterized protein YpfM
RA	2,590,775	G→A	5.9%	intergenic (+67/+32)	acrD → / ← ypfM	multidrug efflux pump RND permease AcrD/uncharacterized protein YpfM
RA	2,596,873	Δ1 bp	11.0%	intergenic (‑136/+32)	ypfJ ← / ← purC	uncharacterized protein YpfJ/phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	2,596,878:1	+G	11.1%	intergenic (‑141/+27)	ypfJ ← / ← purC	uncharacterized protein YpfJ/phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	2,597,699	G→T	5.8%	intergenic (‑81/+132)	purC ← / ← bamC	phosphoribosylaminoimidazole‑succinocarboxamide synthase/outer membrane protein assembly factor BamC
RA	2,597,700	A→C	5.9%	intergenic (‑82/+131)	purC ← / ← bamC	phosphoribosylaminoimidazole‑succinocarboxamide synthase/outer membrane protein assembly factor BamC
RA	2,597,706	T→G	5.9%	intergenic (‑88/+125)	purC ← / ← bamC	phosphoribosylaminoimidazole‑succinocarboxamide synthase/outer membrane protein assembly factor BamC
RA	2,597,707	T→C	5.9%	intergenic (‑89/+124)	purC ← / ← bamC	phosphoribosylaminoimidazole‑succinocarboxamide synthase/outer membrane protein assembly factor BamC
RA	2,612,823	T→C	8.1%	A308A (GCT→GCC)	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,830	G→A	7.9%	V311I (GTT→ATT) ‡	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,831	T→A	8.1%	V311D (GTT→GAT) ‡	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,832	T→C	8.1%	V311V (GTT→GTC) ‡	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,839	G→A	6.8%	A314T (GCC→ACC) ‡	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,840	C→G	7.0%	A314G (GCC→GGC) ‡	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,973	C→G	9.2%	L358L (CTC→CTG)	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,974	C→G	9.8%	Q359E (CAG→GAG)	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,620,216	C→T	6.3%	intergenic (‑56/+30)	uraA ← / ← upp	hypothetical protein/uracil phosphoribosyltransferase
RA	2,620,218	T→A	6.0%	intergenic (‑58/+28)	uraA ← / ← upp	hypothetical protein/uracil phosphoribosyltransferase
RA	2,620,220	A→G	5.9%	intergenic (‑60/+26)	uraA ← / ← upp	hypothetical protein/uracil phosphoribosyltransferase
RA	2,621,555	C→A	6.1%	S120* (TCA→TAA)	purM →	phosphoribosylformylglycinamide cyclo‑ligase
RA	2,635,339	C→T	6.0%	R370C (CGT→TGT)	xseA →	exodeoxyribonuclease VII subunit XseA
RA	2,638,584	A→T	7.7%	F23L (TTT→TTA)	bamB ←	outer membrane protein assembly factor BamB
RA	2,650,465	A→C	7.4%	I608S (ATC→AGC)	yfhM ←	alpha2‑macroglobulin
RA	2,652,131	G→T	9.2%	P53T (CCG→ACG)	yfhM ←	alpha2‑macroglobulin
RA	2,652,132	C→G	8.3%	V52V (GTG→GTC) ‡	yfhM ←	alpha2‑macroglobulin
RA	2,652,133	A→C	8.2%	V52G (GTG→GGG) ‡	yfhM ←	alpha2‑macroglobulin
RA	2,653,104	G→C	7.0%	W204S (TGG→TCG) ‡	sseA →	3‑mercaptopyruvate sulfurtransferase
RA	2,653,105	G→C	6.9%	W204C (TGG→TGC) ‡	sseA →	3‑mercaptopyruvate sulfurtransferase
RA	2,654,142	T→A	6.5%	noncoding (288/304 nt)	ryfA →	small regulatory RNA RyfA
RA	2,654,143	T→A	5.5%	noncoding (289/304 nt)	ryfA →	small regulatory RNA RyfA
RA	2,654,144	T→A	5.3%	noncoding (290/304 nt)	ryfA →	small regulatory RNA RyfA
RA	2,660,611	G→T	12.6%	Y307* (TAC→TAA) ‡	iscS ←	cysteine desulfurase
RA	2,660,612	T→A	12.6%	Y307F (TAC→TTC) ‡	iscS ←	cysteine desulfurase
RA	2,660,613	A→C	12.5%	Y307D (TAC→GAC) ‡	iscS ←	cysteine desulfurase
RA	2,660,621	C→G	9.3%	S304T (AGC→ACC)	iscS ←	cysteine desulfurase
RA	2,662,316	G→A	6.0%	intergenic (‑185/+267)	iscR ← / ← trmJ	DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase
RA	2,662,317	C→T	5.9%	intergenic (‑186/+266)	iscR ← / ← trmJ	DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase
RA	2,662,323	G→T	6.3%	intergenic (‑192/+260)	iscR ← / ← trmJ	DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase
RA	2,662,324	A→C	6.7%	intergenic (‑193/+259)	iscR ← / ← trmJ	DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase
RA	2,662,330	A→G	6.0%	intergenic (‑199/+253)	iscR ← / ← trmJ	DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase
RA	2,662,331	T→C	6.0%	intergenic (‑200/+252)	iscR ← / ← trmJ	DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase
RA	2,662,556	A→G	7.1%	intergenic (‑425/+27)	iscR ← / ← trmJ	DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase
RA	2,662,558	T→A	7.1%	intergenic (‑427/+25)	iscR ← / ← trmJ	DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase
RA	2,662,560	C→T	7.1%	intergenic (‑429/+23)	iscR ← / ← trmJ	DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase
RA	2,662,566	G→T	6.0%	intergenic (‑435/+17)	iscR ← / ← trmJ	DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase
RA	2,662,567	C→T	5.9%	intergenic (‑436/+16)	iscR ← / ← trmJ	DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase
RA	2,663,466	G→T	7.3%	V9L (GTG→TTG)	suhB →	inositol‑phosphate phosphatase
RA	2,663,474	A→T	6.7%	A11A (GCA→GCT)	suhB →	inositol‑phosphate phosphatase
RA	2,663,482	A→C	6.2%	K14T (AAG→ACG)	suhB →	inositol‑phosphate phosphatase
RA	2,672,639	A→C	6.7%	Q198P (CAG→CCG) ‡	hcaD →	putative 3‑phenylpropionate/cinnamate dioxygenase ferredoxin reductase subunit
RA	2,672,640	G→T	6.6%	Q198H (CAG→CAT) ‡	hcaD →	putative 3‑phenylpropionate/cinnamate dioxygenase ferredoxin reductase subunit
RA	2,673,783	G→A	12.0%	intergenic (+15/+33)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,673,784	C→A	11.8%	intergenic (+16/+32)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,673,790	G→T	13.7%	intergenic (+22/+26)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,673,791	A→C	14.4%	intergenic (+23/+25)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,673,797	T→G	14.7%	intergenic (+29/+19)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,673,798	T→C	14.8%	intergenic (+30/+18)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,679,430	Δ1 bp	6.1%	intergenic (‑63/+34)	yphF ← / ← yphG	putative ABC transporter periplasmic binding protein YphF/DUF5107 domain‑containing protein YphG
RA	2,679,434:1	+C	6.2%	intergenic (‑67/+30)	yphF ← / ← yphG	putative ABC transporter periplasmic binding protein YphF/DUF5107 domain‑containing protein YphG
RA	2,680,639	T→C	6.2%	S703G (AGC→GGC)	yphG ←	DUF5107 domain‑containing protein YphG
RA	2,680,640	G→A	6.3%	A702A (GCC→GCT)	yphG ←	DUF5107 domain‑containing protein YphG
RA	2,681,967	T→C	5.3%	Y260C (TAC→TGC)	yphG ←	DUF5107 domain‑containing protein YphG
RA	2,681,969	C→G	5.2%	Q259H (CAG→CAC)	yphG ←	DUF5107 domain‑containing protein YphG
RA	2,687,043	G→T	10.7%	intergenic (+18/+27)	hmp → / ← glnB	nitric oxide dioxygenase/nitrogen regulatory protein PII‑1
RA	2,687,044	A→T	10.4%	intergenic (+19/+26)	hmp → / ← glnB	nitric oxide dioxygenase/nitrogen regulatory protein PII‑1
RA	2,687,045	A→T	10.6%	intergenic (+20/+25)	hmp → / ← glnB	nitric oxide dioxygenase/nitrogen regulatory protein PII‑1
RA	2,687,046	A→C	10.7%	intergenic (+21/+24)	hmp → / ← glnB	nitric oxide dioxygenase/nitrogen regulatory protein PII‑1
RA	2,691,169	A→T	9.4%	noncoding (172/184 nt)	glmY ←	small regulatory RNA GlmY
RA	2,691,171	T→A	9.4%	noncoding (170/184 nt)	glmY ←	small regulatory RNA GlmY
RA	2,691,173	A→T	9.4%	noncoding (168/184 nt)	glmY ←	small regulatory RNA GlmY
RA	2,692,286	G→C	7.1%	H1086Q (CAC→CAG)	purL ←	phosphoribosylformylglycinamide synthetase
RA	2,692,292	A→G	7.0%	D1084D (GAT→GAC) ‡	purL ←	phosphoribosylformylglycinamide synthetase
RA	2,692,293	T→A	7.1%	D1084V (GAT→GTT) ‡	purL ←	phosphoribosylformylglycinamide synthetase
RA	2,692,294	C→T	7.0%	D1084N (GAT→AAT) ‡	purL ←	phosphoribosylformylglycinamide synthetase
RA	2,692,300	G→C	7.2%	L1082V (CTG→GTG)	purL ←	phosphoribosylformylglycinamide synthetase
RA	2,700,862	G→A	8.1%	P46L (CCG→CTG) ‡	acpS ←	holo‑[acyl‑carrier‑protein] synthase
RA	2,700,863	G→C	8.0%	P46A (CCG→GCG) ‡	acpS ←	holo‑[acyl‑carrier‑protein] synthase
RA	2,700,865	T→A	8.2%	Q45L (CAG→CTG)	acpS ←	holo‑[acyl‑carrier‑protein] synthase
RA	2,700,867	G→C	8.4%	H44Q (CAC→CAG) ‡	acpS ←	holo‑[acyl‑carrier‑protein] synthase
RA	2,700,868	T→C	8.5%	H44R (CAC→CGC) ‡	acpS ←	holo‑[acyl‑carrier‑protein] synthase
RA	2,704,304	A→G	6.0%	intergenic (‑241/+31)	rnc ← / ← lepB	RNase III/signal peptidase I
RA	2,704,306	A→T	5.5%	intergenic (‑243/+29)	rnc ← / ← lepB	RNase III/signal peptidase I
RA	2,704,308	C→T	5.8%	intergenic (‑245/+27)	rnc ← / ← lepB	RNase III/signal peptidase I
RA	2,705,868	A→T	9.6%	I419I (ATT→ATA)	lepA ←	elongation factor 4
RA	2,705,871	A→T	9.6%	V418V (GTT→GTA)	lepA ←	elongation factor 4
RA	2,712,128	C→G	6.9%	A213P (GCG→CCG)	yfiC ←	tRNA m(6)A37 methyltransferase
RA	2,712,130	T→A	7.9%	Q212L (CAG→CTG)	yfiC ←	tRNA m(6)A37 methyltransferase
RA	2,712,133	G→C	6.8%	P211R (CCG→CGG)	yfiC ←	tRNA m(6)A37 methyltransferase
RA	2,716,030	T→G	6.4%	intergenic (+20/+36)	eamB → / ← grcA	cysteine/O‑acetylserine exporter EamB/stress‑induced alternate pyruvate formate‑lyase subunit
RA	2,717,169	T→G	5.8%	L139R (CTC→CGC) ‡	ung →	uracil‑DNA glycosylase
RA	2,717,170	C→A	5.7%	L139L (CTC→CTA) ‡	ung →	uracil‑DNA glycosylase
RA	2,724,095	C→A	5.8%	intergenic (+13/‑33)	pssA → / → yfiM	phosphatidylserine synthase/protein YfiM
RA	2,724,097	T→A	5.4%	intergenic (+15/‑31)	pssA → / → yfiM	phosphatidylserine synthase/protein YfiM
RA	2,724,099	T→G	5.4%	intergenic (+17/‑29)	pssA → / → yfiM	phosphatidylserine synthase/protein YfiM
RA	2,736,911	C→T	8.2%	intergenic (+28/‑243)	bamD → / → raiA	outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor
RA	2,736,913	T→A	7.6%	intergenic (+30/‑241)	bamD → / → raiA	outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor
RA	2,736,914	T→A	7.8%	intergenic (+31/‑240)	bamD → / → raiA	outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor
RA	2,736,916	A→G	8.3%	intergenic (+33/‑238)	bamD → / → raiA	outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor
RA	2,737,703	A→G	5.0%	intergenic (+57/‑42)	pheL → / → pheA	phe operon leader peptide/fused chorismate mutase/prephenate dehydratase
RA	2,737,705	A→T	5.1%	intergenic (+59/‑40)	pheL → / → pheA	phe operon leader peptide/fused chorismate mutase/prephenate dehydratase
RA	2,737,707	C→T	5.1%	intergenic (+61/‑38)	pheL → / → pheA	phe operon leader peptide/fused chorismate mutase/prephenate dehydratase
RA	2,737,711	G→A	5.4%	intergenic (+65/‑34)	pheL → / → pheA	phe operon leader peptide/fused chorismate mutase/prephenate dehydratase
RA	2,745,019	T→A	5.9%	K107N (AAA→AAT) ‡	trmD ←	tRNA m(1)G37 methyltransferase
RA	2,745,020	T→A	6.0%	K107I (AAA→ATA) ‡	trmD ←	tRNA m(1)G37 methyltransferase
RA	2,745,021	T→A	5.9%	K107* (AAA→TAA) ‡	trmD ←	tRNA m(1)G37 methyltransferase
RA	2,750,073	G→T	12.6%	intergenic (+13/+42)	yfjD → / ← grpE	putative inner membrane protein/nucleotide exchange factor GrpE
RA	2,750,078	T→G	12.4%	intergenic (+18/+37)	yfjD → / ← grpE	putative inner membrane protein/nucleotide exchange factor GrpE
RA	2,750,081	C→A	11.6%	intergenic (+21/+34)	yfjD → / ← grpE	putative inner membrane protein/nucleotide exchange factor GrpE
RA	2,750,086	A→C	13.6%	intergenic (+26/+29)	yfjD → / ← grpE	putative inner membrane protein/nucleotide exchange factor GrpE
RA	2,752,758	T→A	6.2%	L322M (TTG→ATG)	recN →	DNA repair protein RecN
RA	2,753,986	A→T	8.7%	intergenic (+40/+22)	bamE → / ← yfjF	outer membrane protein assembly factor BamE/putative component of the Rsx system
RA	2,757,418	C→A	7.7%	intergenic (+18/+226)	intA → / ← yfjH	CP4‑57 prophage; integrase/CP4‑57 prophage; protein YfjH
RA	2,757,419	T→G	7.8%	intergenic (+19/+225)	intA → / ← yfjH	CP4‑57 prophage; integrase/CP4‑57 prophage; protein YfjH
RA	2,757,420	C→A	8.6%	intergenic (+20/+224)	intA → / ← yfjH	CP4‑57 prophage; integrase/CP4‑57 prophage; protein YfjH
RA	2,757,421	T→G	8.5%	intergenic (+21/+223)	intA → / ← yfjH	CP4‑57 prophage; integrase/CP4‑57 prophage; protein YfjH
RA	2,761,620	T→G	10.3%	K641Q (AAG→CAG)	abpB ←	CP4‑57 prophage; putative helicase YfjK
RA	2,761,623	C→A	10.3%	V640L (GTA→TTA)	abpB ←	CP4‑57 prophage; putative helicase YfjK
RA	2,762,823	G→A	7.3%	L240L (CTG→TTG)	abpB ←	CP4‑57 prophage; putative helicase YfjK
RA	2,762,824	T→A	7.1%	K239N (AAA→AAT) ‡	abpB ←	CP4‑57 prophage; putative helicase YfjK
RA	2,762,825	T→C	7.1%	K239R (AAA→AGA) ‡	abpB ←	CP4‑57 prophage; putative helicase YfjK
RA	2,768,609	T→C	5.5%	intergenic (+36/‑56)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,768,614	A→C	5.4%	intergenic (+41/‑51)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,768,615	G→T	5.3%	intergenic (+42/‑50)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,768,620	G→A	6.1%	intergenic (+47/‑45)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,771,180	G→T	7.4%	L11L (CTG→CTT)	yfjT →	CP4‑57 prophage; uncharacterized protein YfjT
RA	2,771,183	A→C	7.7%	A12A (GCA→GCC)	yfjT →	CP4‑57 prophage; uncharacterized protein YfjT
RA	2,772,226	C→T	9.3%	pseudogene (957/1016 nt)	yfjV ←	CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment
RA	2,772,227	A→T	9.3%	pseudogene (956/1016 nt)	yfjV ←	CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment
RA	2,772,236	A→T	9.5%	pseudogene (947/1016 nt)	yfjV ←	CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment
RA	2,772,237	A→G	9.5%	pseudogene (946/1016 nt)	yfjV ←	CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment
RA	2,794,087	T→A	5.9%	intergenic (+72/‑166)	gabT → / → gabP	4‑aminobutyrate aminotransferase GabT/4‑aminobutyrate:H(+) symporter
RA	2,794,088	T→A	5.8%	intergenic (+73/‑165)	gabT → / → gabP	4‑aminobutyrate aminotransferase GabT/4‑aminobutyrate:H(+) symporter
RA	2,794,094	G→T	6.2%	intergenic (+79/‑159)	gabT → / → gabP	4‑aminobutyrate aminotransferase GabT/4‑aminobutyrate:H(+) symporter
RA	2,794,095	C→T	6.2%	intergenic (+80/‑158)	gabT → / → gabP	4‑aminobutyrate aminotransferase GabT/4‑aminobutyrate:H(+) symporter
RA	2,796,375	T→A	7.3%	I138F (ATT→TTT)	kbp ←	K(+) binding protein
RA	2,799,634	A→G	7.1%	intergenic (+21/+16)	alaE → / ← ygaC	L‑alanine exporter/protein YgaC
RA	2,799,635	T→A	7.1%	intergenic (+22/+15)	alaE → / ← ygaC	L‑alanine exporter/protein YgaC
RA	2,799,636	C→T	6.9%	intergenic (+23/+14)	alaE → / ← ygaC	L‑alanine exporter/protein YgaC
RA	2,800,519	T→G	5.5%	intergenic (+44/‑204)	ygaM → / → nrdH	DUF883 domain‑containing protein YgaM/glutaredoxin‑like protein
RA	2,801,056	A→T	6.7%	N31I (AAT→ATT)	nrdI →	dimanganese‑tyrosyl radical cofactor maintenance flavodoxin NrdI
RA	2,802,651	T→C	5.2%	V435A (GTA→GCA)	nrdE →	ribonucleoside‑diphosphate reductase 2 subunit alpha
RA	2,802,655	G→C	5.4%	E436D (GAG→GAC)	nrdE →	ribonucleoside‑diphosphate reductase 2 subunit alpha
RA	2,802,656	A→T	5.4%	T437S (ACT→TCT)	nrdE →	ribonucleoside‑diphosphate reductase 2 subunit alpha
RA	2,807,091	T→C	8.8%	intergenic (+17/‑41)	proW → / → proX	glycine betaine ABC transporter membrane subunit ProW/glycine betaine ABC transporter periplasmic binding protein ProX
RA	2,807,093	A→T	9.3%	intergenic (+19/‑39)	proW → / → proX	glycine betaine ABC transporter membrane subunit ProW/glycine betaine ABC transporter periplasmic binding protein ProX
RA	2,807,095	G→A	8.7%	intergenic (+21/‑37)	proW → / → proX	glycine betaine ABC transporter membrane subunit ProW/glycine betaine ABC transporter periplasmic binding protein ProX
RA	2,810,872	C→T	9.7%	H35Y (CAC→TAC) ‡	mprA →	DNA‑binding transcriptional repressor MprA
RA	2,810,873	A→G	9.6%	H35R (CAC→CGC) ‡	mprA →	DNA‑binding transcriptional repressor MprA
RA	2,814,174	T→A	12.6%	intergenic (+20/+44)	emrB → / ← luxS	multidrug efflux pump membrane subunit EmrB/S‑ribosylhomocysteine lyase
RA	2,814,175	T→A	12.3%	intergenic (+21/+43)	emrB → / ← luxS	multidrug efflux pump membrane subunit EmrB/S‑ribosylhomocysteine lyase
RA	2,822,673	C→T	6.3%	intergenic (‑34/+35)	recX ← / ← recA	RecA inhibitor RecX/DNA recombination/repair protein RecA
RA	2,822,678	G→T	5.4%	intergenic (‑39/+30)	recX ← / ← recA	RecA inhibitor RecX/DNA recombination/repair protein RecA
RA	2,822,679	A→C	6.6%	intergenic (‑40/+29)	recX ← / ← recA	RecA inhibitor RecX/DNA recombination/repair protein RecA
RA	2,822,684	A→G	6.4%	intergenic (‑45/+24)	recX ← / ← recA	RecA inhibitor RecX/DNA recombination/repair protein RecA
RA	2,823,838	C→A	6.2%	intergenic (‑69/+11)	recA ← / ← pncC	DNA recombination/repair protein RecA/NMN aminohydrolase
RA	2,823,839	T→G	6.2%	intergenic (‑70/+10)	recA ← / ← pncC	DNA recombination/repair protein RecA/NMN aminohydrolase
RA	2,828,569	C→A	9.0%	intergenic (+53/‑52)	srlD → / → gutM	sorbitol‑6‑phosphate 2‑dehydrogenase/DNA‑binding transcriptional activator GutM
RA	2,828,572	T→G	9.1%	intergenic (+56/‑49)	srlD → / → gutM	sorbitol‑6‑phosphate 2‑dehydrogenase/DNA‑binding transcriptional activator GutM
RA	2,828,573	A→T	8.9%	intergenic (+57/‑48)	srlD → / → gutM	sorbitol‑6‑phosphate 2‑dehydrogenase/DNA‑binding transcriptional activator GutM
RA	2,828,574	C→A	9.0%	intergenic (+58/‑47)	srlD → / → gutM	sorbitol‑6‑phosphate 2‑dehydrogenase/DNA‑binding transcriptional activator GutM
RA	2,828,577	T→G	9.1%	intergenic (+61/‑44)	srlD → / → gutM	sorbitol‑6‑phosphate 2‑dehydrogenase/DNA‑binding transcriptional activator GutM
RA	2,829,723	A→G	5.7%	D226G (GAT→GGT)	srlR →	DNA‑binding transcriptional repressor SrlR
RA	2,829,727	G→T	5.6%	K227N (AAG→AAT)	srlR →	DNA‑binding transcriptional repressor SrlR
RA	2,829,729	T→A	5.7%	L228Q (CTG→CAG)	srlR →	DNA‑binding transcriptional repressor SrlR
RA	2,829,731	A→C	5.6%	I229L (ATT→CTT)	srlR →	DNA‑binding transcriptional repressor SrlR
RA	2,829,735	C→T	5.6%	T230I (ACC→ATC)	srlR →	DNA‑binding transcriptional repressor SrlR
RA	2,838,222	A→T	6.3%	intergenic (‑117/+32)	hydN ← / ← ascG	putative electron transport protein HydN/DNA‑binding transcriptional repressor AscG
RA	2,838,231	A→T	8.0%	intergenic (‑126/+23)	hydN ← / ← ascG	putative electron transport protein HydN/DNA‑binding transcriptional repressor AscG
RA	2,839,321	C→G	6.9%	intergenic (‑57/‑203)	ascG ← / → ascF	DNA‑binding transcriptional repressor AscG/beta‑glucoside specific PTS enzyme IIBC component
RA	2,839,323	T→A	6.2%	intergenic (‑59/‑201)	ascG ← / → ascF	DNA‑binding transcriptional repressor AscG/beta‑glucoside specific PTS enzyme IIBC component
RA	2,839,324	T→A	6.2%	intergenic (‑60/‑200)	ascG ← / → ascF	DNA‑binding transcriptional repressor AscG/beta‑glucoside specific PTS enzyme IIBC component
RA	2,839,326	C→G	6.2%	intergenic (‑62/‑198)	ascG ← / → ascF	DNA‑binding transcriptional repressor AscG/beta‑glucoside specific PTS enzyme IIBC component
RA	2,851,049	G→T	12.4%	D17Y (GAT→TAT)	hypB →	hydrogenase isoenzymes nickel incorporation protein HypB
RA	2,851,053	A→T	11.6%	E18V (GAA→GTA) ‡	hypB →	hydrogenase isoenzymes nickel incorporation protein HypB
RA	2,851,054	A→T	11.8%	E18D (GAA→GAT) ‡	hypB →	hydrogenase isoenzymes nickel incorporation protein HypB
RA	2,851,058	A→C	11.6%	N20H (AAC→CAC)	hypB →	hydrogenase isoenzymes nickel incorporation protein HypB
RA	2,854,362	C→G	6.7%	L9V (CTC→GTC)	fhlA →	DNA‑binding transcriptional activator FhlA
RA	2,854,366	G→A	6.3%	G10E (GGA→GAA)	fhlA →	DNA‑binding transcriptional activator FhlA
RA	2,854,373	A→C	5.5%	Q12H (CAA→CAC)	fhlA →	DNA‑binding transcriptional activator FhlA
RA	2,854,374	G→T	5.3%	G13W (GGG→TGG) ‡	fhlA →	DNA‑binding transcriptional activator FhlA
RA	2,854,375	G→T	5.4%	G13V (GGG→GTG) ‡	fhlA →	DNA‑binding transcriptional activator FhlA
RA	2,854,381	T→C	5.7%	F15S (TTC→TCC)	fhlA →	DNA‑binding transcriptional activator FhlA
RA	2,854,385	C→G	5.6%	D16E (GAC→GAG)	fhlA →	DNA‑binding transcriptional activator FhlA
RA	2,856,257	G→C	7.5%	L640L (CTG→CTC)	fhlA →	DNA‑binding transcriptional activator FhlA
RA	2,856,258	G→C	7.7%	E641Q (GAG→CAG)	fhlA →	DNA‑binding transcriptional activator FhlA
RA	2,859,332	T→G	6.4%	L747R (CTC→CGC) ‡	mutS →	DNA mismatch repair protein MutS
RA	2,859,333	C→A	5.0%	L747L (CTC→CTA) ‡	mutS →	DNA mismatch repair protein MutS
RA	2,859,831	T→C	5.2%	H24H (CAT→CAC)	pphB →	phosphoprotein phosphatase 2
RA	2,859,832	G→C	5.2%	G25R (GGT→CGT) ‡	pphB →	phosphoprotein phosphatase 2
RA	2,859,833	G→A	5.2%	G25D (GGT→GAT) ‡	pphB →	phosphoprotein phosphatase 2
RA	2,866,487	G→C	8.5%	intergenic (+22/+72)	ygbN → / ← rpoS	putative transporter YgbN/RNA polymerase, sigma S (sigma 38) factor
RA	2,866,488	G→C	9.1%	intergenic (+23/+71)	ygbN → / ← rpoS	putative transporter YgbN/RNA polymerase, sigma S (sigma 38) factor
RA	2,866,940	C→A	7.7%	K204N (AAG→AAT) ‡	rpoS ←	RNA polymerase, sigma S (sigma 38) factor
RA	2,866,942	T→A	7.7%	K204* (AAG→TAG) ‡	rpoS ←	RNA polymerase, sigma S (sigma 38) factor
RA	2,866,944	T→G	7.6%	D203A (GAT→GCT)	rpoS ←	RNA polymerase, sigma S (sigma 38) factor
RA	2,870,870	T→A	5.4%	E145D (GAA→GAT) ‡	truD ←	tRNA pseudouridine(13) synthase
RA	2,870,871	T→A	5.4%	E145V (GAA→GTA) ‡	truD ←	tRNA pseudouridine(13) synthase
RA	2,872,913	A→G	6.7%	intergenic (‑93/+101)	ftsB ← / ← ygbE	cell division protein FtsB/conserved inner membrane protein YgbE
RA	2,872,914	C→G	6.8%	intergenic (‑94/+100)	ftsB ← / ← ygbE	cell division protein FtsB/conserved inner membrane protein YgbE
RA	2,872,915	C→T	6.9%	intergenic (‑95/+99)	ftsB ← / ← ygbE	cell division protein FtsB/conserved inner membrane protein YgbE
RA	2,879,137	A→C	7.6%	P212P (CCT→CCG) ‡	cas1 ←	multifunctional nuclease Cas1
RA	2,879,138	G→C	8.2%	P212R (CCT→CGT) ‡	cas1 ←	multifunctional nuclease Cas1
RA	2,879,139	G→T	7.2%	P212T (CCT→ACT) ‡	cas1 ←	multifunctional nuclease Cas1
RA	2,889,691	G→C	6.4%	L137V (CTG→GTG)	cysI ←	sulfite reductase, hemoprotein subunit
RA	2,889,694	T→G	6.2%	M136L (ATG→CTG)	cysI ←	sulfite reductase, hemoprotein subunit
RA	2,889,695	C→A	6.2%	Q135H (CAG→CAT)	cysI ←	sulfite reductase, hemoprotein subunit
RA	2,889,698	G→C	6.3%	H134Q (CAC→CAG)	cysI ←	sulfite reductase, hemoprotein subunit
RA	2,897,629	A→T	5.4%	I81N (ATT→AAT)	ygcS ←	putative transporter YgcS
RA	2,900,322	C→T	5.9%	intergenic (‑49/‑270)	ygcW ← / → yqcE	putative deoxygluconate dehydrogenase/putative transport protein YqcE
RA	2,900,324	G→T	5.8%	intergenic (‑51/‑268)	ygcW ← / → yqcE	putative deoxygluconate dehydrogenase/putative transport protein YqcE
RA	2,900,327	A→C	5.7%	intergenic (‑54/‑265)	ygcW ← / → yqcE	putative deoxygluconate dehydrogenase/putative transport protein YqcE
RA	2,902,494	G→T	11.4%	G200V (GGA→GTA) ‡	ygcE →	putative sugar kinase YgcE
RA	2,902,495	A→C	12.1%	G200G (GGA→GGC) ‡	ygcE →	putative sugar kinase YgcE
RA	2,906,607	C→T	7.7%	intergenic (+24/+36)	ygcG → / ← eno	protein YgcG/enolase
RA	2,906,608	G→C	7.8%	intergenic (+25/+35)	ygcG → / ← eno	protein YgcG/enolase
RA	2,906,609	G→C	7.8%	intergenic (+26/+34)	ygcG → / ← eno	protein YgcG/enolase
RA	2,907,998	A→T	10.8%	intergenic (‑57/+31)	eno ← / ← pyrG	enolase/CTP synthetase
RA	2,908,486	G→C	6.8%	A394G (GCC→GGC)	pyrG ←	CTP synthetase
RA	2,909,856	A→T	5.4%	intergenic (‑190/+38)	pyrG ← / ← mazG	CTP synthetase/nucleoside triphosphate pyrophosphohydrolase
RA	2,909,857	A→T	5.5%	intergenic (‑191/+37)	pyrG ← / ← mazG	CTP synthetase/nucleoside triphosphate pyrophosphohydrolase
RA	2,909,858	A→T	5.5%	intergenic (‑192/+36)	pyrG ← / ← mazG	CTP synthetase/nucleoside triphosphate pyrophosphohydrolase
RA	2,911,007	G→A	12.3%	R29C (CGT→TGT)	mazF ←	endoribonuclease toxin MazF
RA	2,911,008	A→T	12.5%	H28Q (CAT→CAA) ‡	mazF ←	endoribonuclease toxin MazF
RA	2,911,009	T→C	12.7%	H28R (CAT→CGT) ‡	mazF ←	endoribonuclease toxin MazF
RA	2,917,895	G→A	7.2%	intergenic (+82/+150)	barA → / ← gudD	sensory histidine kinase BarA/D‑glucarate dehydratase
RA	2,917,896	C→A	7.2%	intergenic (+83/+149)	barA → / ← gudD	sensory histidine kinase BarA/D‑glucarate dehydratase
RA	2,917,909	T→G	7.8%	intergenic (+96/+136)	barA → / ← gudD	sensory histidine kinase BarA/D‑glucarate dehydratase
RA	2,917,910	T→C	7.8%	intergenic (+97/+135)	barA → / ← gudD	sensory histidine kinase BarA/D‑glucarate dehydratase
RA	2,918,017	C→T	5.5%	intergenic (+204/+28)	barA → / ← gudD	sensory histidine kinase BarA/D‑glucarate dehydratase
RA	2,918,019	G→T	5.3%	intergenic (+206/+26)	barA → / ← gudD	sensory histidine kinase BarA/D‑glucarate dehydratase
RA	2,918,020	A→C	6.1%	intergenic (+207/+25)	barA → / ← gudD	sensory histidine kinase BarA/D‑glucarate dehydratase
RA	2,918,022	A→G	5.4%	intergenic (+209/+23)	barA → / ← gudD	sensory histidine kinase BarA/D‑glucarate dehydratase
RA	2,919,899	A→G	10.5%	L283S (TTG→TCG)	gudX ←	glucarate dehydratase‑related protein
RA	2,919,901	G→C	10.5%	G282G (GGC→GGG) ‡	gudX ←	glucarate dehydratase‑related protein
RA	2,919,903	C→G	10.2%	G282R (GGC→CGC) ‡	gudX ←	glucarate dehydratase‑related protein
RA	2,919,905	G→C	10.4%	T281S (ACC→AGC)	gudX ←	glucarate dehydratase‑related protein
RA	2,919,907	C→T	10.4%	A280A (GCG→GCA)	gudX ←	glucarate dehydratase‑related protein
RA	2,923,969	C→G	9.0%	E49Q (GAG→CAG)	yqcC ←	DUF446 domain‑containing protein YqcC
RA	2,923,970	C→G	9.0%	L48L (CTG→CTC)	yqcC ←	DUF446 domain‑containing protein YqcC
RA	2,926,036	A→C	7.3%	E230A (GAA→GCA)	queF →	7‑cyano‑7‑deazaguanine reductase
RA	2,926,039	A→T	6.2%	Q231L (CAG→CTG)	queF →	7‑cyano‑7‑deazaguanine reductase
RA	2,926,042	G→T	6.0%	C232F (TGC→TTC)	queF →	7‑cyano‑7‑deazaguanine reductase
RA	2,933,395	G→T	5.2%	C98* (TGC→TGA)	fucA ←	L‑fuculose‑phosphate aldolase
RA	2,933,398	A→T	6.0%	H97Q (CAT→CAA)	fucA ←	L‑fuculose‑phosphate aldolase
RA	2,933,401	A→C	6.4%	V96V (GTT→GTG)	fucA ←	L‑fuculose‑phosphate aldolase
RA	2,936,359	T→A	5.4%	V259D (GTT→GAT) ‡	fucI →	L‑fucose isomerase
RA	2,936,360	T→A	6.2%	V259V (GTT→GTA) ‡	fucI →	L‑fucose isomerase
RA	2,939,331	A→G	6.5%	intergenic (+21/‑37)	fucU → / → fucR	L‑fucose mutarotase/DNA‑binding transcriptional activator FucR
RA	2,939,333	G→C	6.8%	intergenic (+23/‑35)	fucU → / → fucR	L‑fucose mutarotase/DNA‑binding transcriptional activator FucR
RA	2,939,335	C→T	6.6%	intergenic (+25/‑33)	fucU → / → fucR	L‑fucose mutarotase/DNA‑binding transcriptional activator FucR
RA	2,945,970	A→G	5.1%	intergenic (‑128/+111)	tcdA ← / ← mltA	tRNA threonylcarbamoyladenosine dehydratase/membrane‑bound lytic murein transglycosylase A
RA	2,945,977	T→G	5.1%	intergenic (‑135/+104)	tcdA ← / ← mltA	tRNA threonylcarbamoyladenosine dehydratase/membrane‑bound lytic murein transglycosylase A
RA	2,945,984	G→T	5.0%	intergenic (‑142/+97)	tcdA ← / ← mltA	tRNA threonylcarbamoyladenosine dehydratase/membrane‑bound lytic murein transglycosylase A
RA	2,945,985	C→T	5.2%	intergenic (‑143/+96)	tcdA ← / ← mltA	tRNA threonylcarbamoyladenosine dehydratase/membrane‑bound lytic murein transglycosylase A
RA	2,960,926	G→C	7.0%	G501G (GGC→GGG) ‡	recC ←	exodeoxyribonuclease V subunit RecC
RA	2,960,928	C→G	6.8%	G501R (GGC→CGC) ‡	recC ←	exodeoxyribonuclease V subunit RecC
RA	2,960,930	G→C	6.7%	S500C (TCC→TGC)	recC ←	exodeoxyribonuclease V subunit RecC
RA	2,961,248	A→T	8.3%	L394Q (CTG→CAG)	recC ←	exodeoxyribonuclease V subunit RecC
RA	2,961,251	A→T	8.3%	L393Q (CTG→CAG)	recC ←	exodeoxyribonuclease V subunit RecC
RA	2,962,561	G→A	7.6%	N68N (AAC→AAT) ‡	ppdC ←	putative YgdA
RA	2,962,562	T→C	7.8%	N68S (AAC→AGC) ‡	ppdC ←	putative YgdA
RA	2,971,146	T→C	7.4%	intergenic (+13/‑125)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,971,151	T→C	7.9%	intergenic (+18/‑120)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,971,154	G→A	6.9%	intergenic (+21/‑117)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,971,159	G→A	8.0%	intergenic (+26/‑112)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,976,320	T→G	5.0%	noncoding (66/82 nt)	omrB ←	small regulatory RNA OmrB
RA	2,976,321	C→A	5.8%	noncoding (65/82 nt)	omrB ←	small regulatory RNA OmrB
RA	2,980,742	A→G	11.2%	intergenic (‑107/+22)	ygeA ← / ← araE	amino acid racemase/arabinose:H(+) symporter
RA	2,980,744	A→T	12.4%	intergenic (‑109/+20)	ygeA ← / ← araE	amino acid racemase/arabinose:H(+) symporter
RA	2,980,746	C→T	12.0%	intergenic (‑111/+18)	ygeA ← / ← araE	amino acid racemase/arabinose:H(+) symporter
RA	2,987,103	C→T	11.9%	intergenic (+27/‑433)	yqeG → / → yqeH	putative transporter YqeG/putative LuxR family transcriptional regulator YqeH
RA	2,987,104	T→A	10.9%	intergenic (+28/‑432)	yqeG → / → yqeH	putative transporter YqeG/putative LuxR family transcriptional regulator YqeH
RA	2,987,105	A→G	10.9%	intergenic (+29/‑431)	yqeG → / → yqeH	putative transporter YqeG/putative LuxR family transcriptional regulator YqeH
RA	2,993,896	T→A	5.9%	intergenic (+40/‑43)	ygeI → / → pbl	protein YgeI/transglycosylase domain‑containing protein Pbl
RA	3,005,888	C→T	6.3%	intergenic (‑102/‑374)	ygeV ← / → ygeW	putative sigma(54)‑dependent transcriptional regulator YgeV/putative carbamoyltransferase YgeW
RA	3,005,889	A→C	6.5%	intergenic (‑103/‑373)	ygeV ← / → ygeW	putative sigma(54)‑dependent transcriptional regulator YgeV/putative carbamoyltransferase YgeW
RA	3,005,891	A→T	6.6%	intergenic (‑105/‑371)	ygeV ← / → ygeW	putative sigma(54)‑dependent transcriptional regulator YgeV/putative carbamoyltransferase YgeW
RA	3,005,893	G→T	6.5%	intergenic (‑107/‑369)	ygeV ← / → ygeW	putative sigma(54)‑dependent transcriptional regulator YgeV/putative carbamoyltransferase YgeW
RA	3,005,894	A→G	6.6%	intergenic (‑108/‑368)	ygeV ← / → ygeW	putative sigma(54)‑dependent transcriptional regulator YgeV/putative carbamoyltransferase YgeW
RA	3,007,466	T→C	7.5%	intergenic (+14/‑44)	ygeW → / → ygeX	putative carbamoyltransferase YgeW/2,3‑diaminopropionate ammonia‑lyase
RA	3,007,473	G→A	7.8%	intergenic (+21/‑37)	ygeW → / → ygeX	putative carbamoyltransferase YgeW/2,3‑diaminopropionate ammonia‑lyase
RA	3,008,626	G→A	6.2%	V373I (GTT→ATT) ‡	ygeX →	2,3‑diaminopropionate ammonia‑lyase
RA	3,008,628	T→A	6.3%	V373V (GTT→GTA) ‡	ygeX →	2,3‑diaminopropionate ammonia‑lyase
RA	3,008,630	T→C	6.8%	I374T (ATC→ACC)	ygeX →	2,3‑diaminopropionate ammonia‑lyase
RA	3,020,510	G→T	8.7%	intergenic (+21/‑30)	ssnA → / → ygfM	putative aminohydrolase/putative oxidoreductase
RA	3,020,511	C→G	8.7%	intergenic (+22/‑29)	ssnA → / → ygfM	putative aminohydrolase/putative oxidoreductase
RA	3,020,512	A→C	8.6%	intergenic (+23/‑28)	ssnA → / → ygfM	putative aminohydrolase/putative oxidoreductase
RA	3,033,269	C→T	5.0%	H69Y (CAC→TAC) ‡	idi →	isopentenyl‑diphosphate Delta‑isomerase
RA	3,033,270	A→G	5.1%	H69R (CAC→CGC) ‡	idi →	isopentenyl‑diphosphate Delta‑isomerase
RA	3,033,624	A→G	7.9%	intergenic (+11/+33)	idi → / ← lysS	isopentenyl‑diphosphate Delta‑isomerase/lysine‑‑tRNA ligase, constitutive
RA	3,033,627	T→A	7.7%	intergenic (+14/+30)	idi → / ← lysS	isopentenyl‑diphosphate Delta‑isomerase/lysine‑‑tRNA ligase, constitutive
RA	3,033,628	T→A	7.3%	intergenic (+15/+29)	idi → / ← lysS	isopentenyl‑diphosphate Delta‑isomerase/lysine‑‑tRNA ligase, constitutive
RA	3,033,631	C→T	7.6%	intergenic (+18/+26)	idi → / ← lysS	isopentenyl‑diphosphate Delta‑isomerase/lysine‑‑tRNA ligase, constitutive
RA	3,036,655	C→T	5.2%	L484L (CTG→CTA)	recJ ←	ssDNA‑specific exonuclease RecJ
RA	3,038,277	A→C	5.4%	S182R (AGT→AGG) ‡	dsbC ←	protein disulfide isomerase DsbC
RA	3,038,279	T→A	5.4%	S182C (AGT→TGT) ‡	dsbC ←	protein disulfide isomerase DsbC
RA	3,038,283	T→A	5.4%	P180P (CCA→CCT) ‡	dsbC ←	protein disulfide isomerase DsbC
RA	3,038,285	G→T	5.4%	P180T (CCA→ACA) ‡	dsbC ←	protein disulfide isomerase DsbC
RA	3,041,632	T→A	92.6%	V107E (GTG→GAG)	ygfZ →	folate‑binding protein
RA	3,041,974	G→T	10.8%	G221V (GGT→GTT)	ygfZ →	folate‑binding protein
RA	3,042,317	T→A	6.1%	intergenic (+24/+172)	ygfZ → / ← yqfA	folate‑binding protein/hemolysin‑III family protein
RA	3,044,327	C→G	5.5%	S222R (AGC→AGG)	bglA →	6‑phospho‑beta‑glucosidase A
RA	3,044,330	C→G	6.3%	A223A (GCC→GCG)	bglA →	6‑phospho‑beta‑glucosidase A
RA	3,045,124	T→C	9.3%	intergenic (+23/+34)	bglA → / ← ygfF	6‑phospho‑beta‑glucosidase A/putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
RA	3,045,126	C→A	9.3%	intergenic (+25/+32)	bglA → / ← ygfF	6‑phospho‑beta‑glucosidase A/putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
RA	3,045,127	T→G	9.7%	intergenic (+26/+31)	bglA → / ← ygfF	6‑phospho‑beta‑glucosidase A/putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
RA	3,045,129	G→A	9.9%	intergenic (+28/+29)	bglA → / ← ygfF	6‑phospho‑beta‑glucosidase A/putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
RA	3,045,994	G→T	7.4%	intergenic (‑93/+174)	ygfF ← / ← gcvP	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase
RA	3,045,999	T→G	6.4%	intergenic (‑98/+169)	ygfF ← / ← gcvP	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase
RA	3,046,000	T→A	6.4%	intergenic (‑99/+168)	ygfF ← / ← gcvP	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase
RA	3,046,001	C→A	6.1%	intergenic (‑100/+167)	ygfF ← / ← gcvP	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase
RA	3,046,006	A→C	7.7%	intergenic (‑105/+162)	ygfF ← / ← gcvP	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase
RA	3,050,713	A→T	8.3%	intergenic (‑46/‑245)	gcvT ← / → yqfI	aminomethyltransferase/protein YqfI
RA	3,052,886	C→G	6.1%	A211A (GCG→GCC)	ubiH ←	2‑octaprenyl‑6‑methoxyphenol hydroxylase
RA	3,052,890	A→C	6.2%	L210R (CTG→CGG)	ubiH ←	2‑octaprenyl‑6‑methoxyphenol hydroxylase
RA	3,052,893	G→T	7.0%	P209Q (CCG→CAG)	ubiH ←	2‑octaprenyl‑6‑methoxyphenol hydroxylase
RA	3,052,897	C→G	6.1%	G208R (GGC→CGC)	ubiH ←	2‑octaprenyl‑6‑methoxyphenol hydroxylase
RA	3,057,140	A→G	6.9%	intergenic (+149/+38)	sibC → / ← serA	small RNA SibC/phosphoglycerate dehydrogenase
RA	3,057,145	G→C	7.0%	intergenic (+154/+33)	sibC → / ← serA	small RNA SibC/phosphoglycerate dehydrogenase
RA	3,057,150	C→T	7.0%	intergenic (+159/+28)	sibC → / ← serA	small RNA SibC/phosphoglycerate dehydrogenase
RA	3,059,703	A→T	7.3%	intergenic (‑92/‑50)	yqfE ← / → argP	conserved protein YqfE/DNA‑binding transcriptional dual regulator ArgP
RA	3,059,704	A→T	7.4%	intergenic (‑93/‑49)	yqfE ← / → argP	conserved protein YqfE/DNA‑binding transcriptional dual regulator ArgP
RA	3,066,308	A→T	5.9%	I289N (ATT→AAT) ‡	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI
RA	3,066,309	T→A	5.8%	I289F (ATT→TTT) ‡	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI
RA	3,066,310	A→T	6.8%	H288Q (CAT→CAA)	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI
RA	3,068,922	G→T	8.6%	intergenic (‑114/+25)	argO ← / ← mscS	L‑arginine exporter/small conductance mechanosensitive channel MscS
RA	3,068,924	G→A	8.6%	intergenic (‑116/+23)	argO ← / ← mscS	L‑arginine exporter/small conductance mechanosensitive channel MscS
RA	3,068,927	T→C	8.8%	intergenic (‑119/+20)	argO ← / ← mscS	L‑arginine exporter/small conductance mechanosensitive channel MscS
RA	3,068,929	A→C	8.6%	intergenic (‑121/+18)	argO ← / ← mscS	L‑arginine exporter/small conductance mechanosensitive channel MscS
RA	3,072,800	C→T	6.6%	D298N (GAT→AAT)	epd ←	D‑erythrose‑4‑phosphate dehydrogenase
RA	3,072,802	A→T	6.5%	V297D (GTC→GAC)	epd ←	D‑erythrose‑4‑phosphate dehydrogenase
RA	3,072,804	A→G	6.7%	I296I (ATT→ATC)	epd ←	D‑erythrose‑4‑phosphate dehydrogenase
RA	3,079,615	C→T	10.9%	intergenic (‑285/+29)	cmtB ← / ← tktA	mannitol‑specific PTS enzyme IIA component CmtB/transketolase 1
RA	3,079,616	G→T	10.7%	intergenic (‑286/+28)	cmtB ← / ← tktA	mannitol‑specific PTS enzyme IIA component CmtB/transketolase 1
RA	3,079,617	A→C	10.7%	intergenic (‑287/+27)	cmtB ← / ← tktA	mannitol‑specific PTS enzyme IIA component CmtB/transketolase 1
RA	3,079,618	A→G	10.8%	intergenic (‑288/+26)	cmtB ← / ← tktA	mannitol‑specific PTS enzyme IIA component CmtB/transketolase 1
RA	3,084,161	G→T	5.1%	A584E (GCG→GAG) ‡	speA ←	arginine decarboxylase, biosynthetic
RA	3,084,162	C→G	5.1%	A584P (GCG→CCG) ‡	speA ←	arginine decarboxylase, biosynthetic
RA	3,084,169	A→G	5.2%	D581D (GAT→GAC) ‡	speA ←	arginine decarboxylase, biosynthetic
RA	3,084,170	T→A	5.3%	D581V (GAT→GTT) ‡	speA ←	arginine decarboxylase, biosynthetic
RA	3,084,171	C→T	5.2%	D581N (GAT→AAT) ‡	speA ←	arginine decarboxylase, biosynthetic
RA	3,084,178	C→G	5.3%	L578L (CTG→CTC) ‡	speA ←	arginine decarboxylase, biosynthetic
RA	3,084,179	A→C	5.3%	L578R (CTG→CGG) ‡	speA ←	arginine decarboxylase, biosynthetic
RA	3,090,226	T→C	9.8%	C158R (TGC→CGC)	yggI →	conserved protein YggI
RA	3,090,229	G→A	10.4%	G159S (GGT→AGT)	yggI →	conserved protein YggI
RA	3,090,272	C→A	5.2%	intergenic (+20/‑75)	yggI → / → endA	conserved protein YggI/DNA‑specific endonuclease I
RA	3,090,273	T→G	5.3%	intergenic (+21/‑74)	yggI → / → endA	conserved protein YggI/DNA‑specific endonuclease I
RA	3,098,515	G→C	9.0%	intergenic (+112/+43)	yggW → / ← yggM	putative coproporphyrinogen‑III oxidase‑like protein YggW/DUF1202 domain‑containing protein YggM
RA	3,098,518	C→T	8.8%	intergenic (+115/+40)	yggW → / ← yggM	putative coproporphyrinogen‑III oxidase‑like protein YggW/DUF1202 domain‑containing protein YggM
RA	3,098,519	A→G	8.7%	intergenic (+116/+39)	yggW → / ← yggM	putative coproporphyrinogen‑III oxidase‑like protein YggW/DUF1202 domain‑containing protein YggM
RA	3,098,522	G→C	10.1%	intergenic (+119/+36)	yggW → / ← yggM	putative coproporphyrinogen‑III oxidase‑like protein YggW/DUF1202 domain‑containing protein YggM
RA	3,100,874	A→T	5.6%	intergenic (‑146/+30)	ansB ← / ← yggN	L‑asparaginase 2/putative EcfF
RA	3,106,997	A→C	5.5%	intergenic (+27/+23)	nupG → / ← speC	nucleoside:H(+) symporter NupG/ornithine decarboxylase, biosynthetic
RA	3,107,875	A→G	7.1%	I427I (ATT→ATC) ‡	speC ←	ornithine decarboxylase, biosynthetic
RA	3,107,876	A→C	7.2%	I427S (ATT→AGT) ‡	speC ←	ornithine decarboxylase, biosynthetic
RA	3,107,879	G→T	7.0%	A426D (GCT→GAT) ‡	speC ←	ornithine decarboxylase, biosynthetic
RA	3,107,880	C→T	6.8%	A426T (GCT→ACT) ‡	speC ←	ornithine decarboxylase, biosynthetic
RA	3,119,574	A→T	7.2%	intergenic (‑462/+23)	yghJ ← / ← glcA	putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA
RA	3,119,576	C→A	7.3%	intergenic (‑464/+21)	yghJ ← / ← glcA	putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA
RA	3,119,577	G→T	7.4%	intergenic (‑465/+20)	yghJ ← / ← glcA	putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA
RA	3,136,628	T→G	10.7%	intergenic (‑257/+35)	pitB ← / ← gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
RA	3,136,629	C→A	10.6%	intergenic (‑258/+34)	pitB ← / ← gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
RA	3,136,630	T→A	10.6%	intergenic (‑259/+33)	pitB ← / ← gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
RA	3,136,631	T→G	10.5%	intergenic (‑260/+32)	pitB ← / ← gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
RA	3,136,632	C→A	10.6%	intergenic (‑261/+31)	pitB ← / ← gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
RA	3,139,633	A→C	7.8%	intergenic (+40/+83)	yghU → / ← hybG	disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein
RA	3,139,639	T→G	6.5%	intergenic (+46/+77)	yghU → / ← hybG	disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein
RA	3,140,351	C→T	10.0%	R150H (CGC→CAC) ‡	hybE ←	hydrogenase 2‑specific chaperone
RA	3,140,352	G→C	9.9%	R150G (CGC→GGC) ‡	hybE ←	hydrogenase 2‑specific chaperone
RA	3,140,353	A→G	9.8%	R149R (CGT→CGC)	hybE ←	hydrogenase 2‑specific chaperone
RA	3,144,160	C→G	9.4%	S2T (AGT→ACT)  E327D (GAG→GAC)	hybB ← hybA ←	hydrogenase 2 membrane subunit hydrogenase 2 iron‑sulfur protein
RA	3,146,761	T→G	6.0%	intergenic (‑24/+95)	yghW ← / ← yghX	DUF2623 domain‑containing protein YghW/putative hydrolase fragment
RA	3,146,762	G→A	6.0%	intergenic (‑25/+94)	yghW ← / ← yghX	DUF2623 domain‑containing protein YghW/putative hydrolase fragment
RA	3,146,763	T→C	5.9%	intergenic (‑26/+93)	yghW ← / ← yghX	DUF2623 domain‑containing protein YghW/putative hydrolase fragment
RA	3,146,764	C→A	5.9%	intergenic (‑27/+92)	yghW ← / ← yghX	DUF2623 domain‑containing protein YghW/putative hydrolase fragment
RA	3,155,227	C→A	9.2%	intergenic (‑9/‑128)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,155,228	A→G	9.1%	intergenic (‑10/‑127)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,155,229	C→T	10.1%	intergenic (‑11/‑126)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,155,230	T→G	9.1%	intergenic (‑12/‑125)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,156,590	C→A	15.5%	intergenic (+72/‑33)	yqhD → / → dkgA	NADPH‑dependent aldehyde reductase YqhD/methylglyoxal reductase DkgA
RA	3,156,591	T→G	15.7%	intergenic (+73/‑32)	yqhD → / → dkgA	NADPH‑dependent aldehyde reductase YqhD/methylglyoxal reductase DkgA
RA	3,161,237	T→G	9.1%	intergenic (‑91/+20)	ygiQ ← / ← ftsP	radical SAM superfamily protein YgiQ/cell division protein required during stress conditions
RA	3,161,238	C→A	9.1%	intergenic (‑92/+19)	ygiQ ← / ← ftsP	radical SAM superfamily protein YgiQ/cell division protein required during stress conditions
RA	3,161,239	C→G	9.1%	intergenic (‑93/+18)	ygiQ ← / ← ftsP	radical SAM superfamily protein YgiQ/cell division protein required during stress conditions
RA	3,161,240	T→G	9.1%	intergenic (‑94/+17)	ygiQ ← / ← ftsP	radical SAM superfamily protein YgiQ/cell division protein required during stress conditions
RA	3,161,241	C→A	9.1%	intergenic (‑95/+16)	ygiQ ← / ← ftsP	radical SAM superfamily protein YgiQ/cell division protein required during stress conditions
RA	3,165,154	T→A	7.5%	M274L (ATG→TTG)	parC ←	DNA topoisomerase IV subunit A
RA	3,165,155	T→A	6.7%	Q273H (CAA→CAT)	parC ←	DNA topoisomerase IV subunit A
RA	3,167,881	C→A	6.6%	K122N (AAG→AAT)	mqsA ←	antitoxin of the MqsRA toxin‑antitoxin system/DNA‑binding transcriptional repressor MqsA
RA	3,169,260	Δ1 bp	8.1%	intergenic (‑29/+24)	ygiV ← / ← ygiW	DNA‑binding transcriptional repressor YgiV/BOF family protein YgiW
RA	3,169,265:1	+T	8.4%	intergenic (‑34/+19)	ygiV ← / ← ygiW	DNA‑binding transcriptional repressor YgiV/BOF family protein YgiW
RA	3,171,852	C→T	11.0%	intergenic (+19/+27)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,171,857	A→T	10.6%	intergenic (+24/+22)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,171,858	A→T	10.6%	intergenic (+25/+21)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,171,863	A→G	11.3%	intergenic (+30/+16)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,180,505	G→T	8.3%	E29* (GAG→TAG) ‡	ygiC →	putative enzyme with ATPase activity
RA	3,180,506	A→C	7.9%	E29A (GAG→GCG) ‡	ygiC →	putative enzyme with ATPase activity
RA	3,180,690	G→A	5.5%	W90* (TGG→TGA)	ygiC →	putative enzyme with ATPase activity
RA	3,180,694	A→G	6.4%	T92A (ACG→GCG)	ygiC →	putative enzyme with ATPase activity
RA	3,181,290	A→T	5.8%	E290D (GAA→GAT)	ygiC →	putative enzyme with ATPase activity
RA	3,181,294	G→C	6.2%	D292H (GAT→CAT)	ygiC →	putative enzyme with ATPase activity
RA	3,181,298	A→T	6.1%	H293L (CAT→CTT)	ygiC →	putative enzyme with ATPase activity
RA	3,192,129	T→A	7.7%	intergenic (‑190/‑79)	glgS ← / → yqiJ	surface composition regulator/putative inner membrane protein
RA	3,192,132	T→A	7.3%	intergenic (‑193/‑76)	glgS ← / → yqiJ	surface composition regulator/putative inner membrane protein
RA	3,193,582	C→A	6.8%	S240* (TCG→TAG)	yqiK →	protein YqiK
RA	3,194,790	A→G	5.7%	noncoding (76/145 nt) I9V (ATT→GTT)	sibD ← ibsD →	small RNA SibD putative toxic peptide IbsD
RA	3,202,693	C→G	6.3%	P268R (CCG→CGG)	cca →	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
RA	3,206,179	T→G	8.9%	A26A (GCA→GCC)	ttdR ←	DNA‑binding transcriptional activator Dan
RA	3,206,183	G→A	9.3%	A25V (GCC→GTC)	ttdR ←	DNA‑binding transcriptional activator Dan
RA	3,215,695	A→T	5.3%	intergenic (+22/+32)	ileX → / ← nfeF	tRNA‑Ile/NADPH‑dependent ferric chelate reductase
RA	3,215,696	A→T	6.1%	intergenic (+23/+31)	ileX → / ← nfeF	tRNA‑Ile/NADPH‑dependent ferric chelate reductase
RA	3,215,697	A→C	5.8%	intergenic (+24/+30)	ileX → / ← nfeF	tRNA‑Ile/NADPH‑dependent ferric chelate reductase
RA	3,215,989	G→C	10.5%	P168R (CCG→CGG)	nfeF ←	NADPH‑dependent ferric chelate reductase
RA	3,215,993	T→A	10.5%	K167* (AAA→TAA)	nfeF ←	NADPH‑dependent ferric chelate reductase
RA	3,215,997	G→C	10.1%	A165A (GCC→GCG)	nfeF ←	NADPH‑dependent ferric chelate reductase
RA	3,216,652	G→A	5.9%	intergenic (‑161/‑127)	nfeF ← / → nfeR	NADPH‑dependent ferric chelate reductase/DNA‑binding transcriptional repressor NfeR
RA	3,216,653	C→A	5.1%	intergenic (‑162/‑126)	nfeF ← / → nfeR	NADPH‑dependent ferric chelate reductase/DNA‑binding transcriptional repressor NfeR
RA	3,216,659	G→T	5.0%	intergenic (‑168/‑120)	nfeF ← / → nfeR	NADPH‑dependent ferric chelate reductase/DNA‑binding transcriptional repressor NfeR
RA	3,216,660	A→C	5.1%	intergenic (‑169/‑119)	nfeF ← / → nfeR	NADPH‑dependent ferric chelate reductase/DNA‑binding transcriptional repressor NfeR
RA	3,221,149	G→A	7.4%	I33I (ATC→ATT) ‡	ygjH ←	putative tRNA‑binding protein YgjH
RA	3,221,150	A→T	7.2%	I33N (ATC→AAC) ‡	ygjH ←	putative tRNA‑binding protein YgjH
RA	3,221,151	T→C	7.1%	I33V (ATC→GTC) ‡	ygjH ←	putative tRNA‑binding protein YgjH
RA	3,221,158	C→G	6.2%	K30N (AAG→AAC)	ygjH ←	putative tRNA‑binding protein YgjH
RA	3,231,266	A→T	5.8%	intergenic (+27/‑399)	ygjK → / → fadH	glycoside hydrolase/2,4‑dienoyl‑CoA reductase
RA	3,231,267	A→T	5.8%	intergenic (+28/‑398)	ygjK → / → fadH	glycoside hydrolase/2,4‑dienoyl‑CoA reductase
RA	3,231,273	T→G	5.8%	intergenic (+34/‑392)	ygjK → / → fadH	glycoside hydrolase/2,4‑dienoyl‑CoA reductase
RA	3,231,274	T→C	5.8%	intergenic (+35/‑391)	ygjK → / → fadH	glycoside hydrolase/2,4‑dienoyl‑CoA reductase
RA	3,231,459	G→A	8.2%	intergenic (+220/‑206)	ygjK → / → fadH	glycoside hydrolase/2,4‑dienoyl‑CoA reductase
RA	3,231,460	C→A	8.1%	intergenic (+221/‑205)	ygjK → / → fadH	glycoside hydrolase/2,4‑dienoyl‑CoA reductase
RA	3,231,466	G→C	11.2%	intergenic (+227/‑199)	ygjK → / → fadH	glycoside hydrolase/2,4‑dienoyl‑CoA reductase
RA	3,231,467	G→C	9.3%	intergenic (+228/‑198)	ygjK → / → fadH	glycoside hydrolase/2,4‑dienoyl‑CoA reductase
RA	3,231,473	T→G	8.4%	intergenic (+234/‑192)	ygjK → / → fadH	glycoside hydrolase/2,4‑dienoyl‑CoA reductase
RA	3,231,474	T→C	8.4%	intergenic (+235/‑191)	ygjK → / → fadH	glycoside hydrolase/2,4‑dienoyl‑CoA reductase
RA	3,234,506	G→A	9.0%	intergenic (‑51/+233)	higB ← / ← rlmG	ribosome‑dependent mRNA interferase toxin HigB/23S rRNA m(2)G1835 methyltransferase
RA	3,234,507	A→T	9.6%	intergenic (‑52/+232)	higB ← / ← rlmG	ribosome‑dependent mRNA interferase toxin HigB/23S rRNA m(2)G1835 methyltransferase
RA	3,234,508	T→C	8.8%	intergenic (‑53/+231)	higB ← / ← rlmG	ribosome‑dependent mRNA interferase toxin HigB/23S rRNA m(2)G1835 methyltransferase
RA	3,241,443	A→G	6.5%	I101T (ATC→ACC)	ygjV ←	inner membrane protein
RA	3,241,445	A→T	7.8%	V100V (GTT→GTA) ‡	ygjV ←	inner membrane protein
RA	3,241,447	C→T	6.7%	V100I (GTT→ATT) ‡	ygjV ←	inner membrane protein
RA	3,243,915	T→C	5.2%	K276R (AAA→AGA) ‡	uxaC ←	D‑glucoronate/D‑galacturonate isomerase
RA	3,243,916	T→A	5.2%	K276* (AAA→TAA) ‡	uxaC ←	D‑glucoronate/D‑galacturonate isomerase
RA	3,243,917	G→A	5.1%	F275F (TTC→TTT)	uxaC ←	D‑glucoronate/D‑galacturonate isomerase
RA	3,246,561	T→G	5.5%	intergenic (+39/‑91)	exuT → / → exuR	hexuronate transporter/DNA‑binding transcriptional repressor ExuR
RA	3,246,562	C→A	5.5%	intergenic (+40/‑90)	exuT → / → exuR	hexuronate transporter/DNA‑binding transcriptional repressor ExuR
RA	3,246,563	T→G	5.5%	intergenic (+41/‑89)	exuT → / → exuR	hexuronate transporter/DNA‑binding transcriptional repressor ExuR
RA	3,246,564	C→A	5.5%	intergenic (+42/‑88)	exuT → / → exuR	hexuronate transporter/DNA‑binding transcriptional repressor ExuR
RA	3,250,460	T→C	5.7%	intergenic (+84/‑102)	yqjK → / → yqjF	conserved protein YqjK/DoxX family protein
RA	3,250,989	G→C	9.6%	intergenic (+35/‑35)	yqjF → / → yqjG	DoxX family protein/glutathionyl‑hydroquinone reductase YqjG
RA	3,250,990	A→T	9.5%	intergenic (+36/‑34)	yqjF → / → yqjG	DoxX family protein/glutathionyl‑hydroquinone reductase YqjG
RA	3,250,991	A→T	9.0%	intergenic (+37/‑33)	yqjF → / → yqjG	DoxX family protein/glutathionyl‑hydroquinone reductase YqjG
RA	3,250,992	G→C	9.2%	intergenic (+38/‑32)	yqjF → / → yqjG	DoxX family protein/glutathionyl‑hydroquinone reductase YqjG
RA	3,253,285	T→A	9.4%	intergenic (+18/+33)	yhaI → / ← yhaJ	putative inner membrane protein/DNA‑binding transcriptional activator YhaJ
RA	3,253,288	T→A	9.4%	intergenic (+21/+30)	yhaI → / ← yhaJ	putative inner membrane protein/DNA‑binding transcriptional activator YhaJ
RA	3,256,441	T→G	7.5%	T71P (ACG→CCG)	cyuA ←	putative L‑cysteine desulfidase CyuA
RA	3,256,442	G→C	7.5%	G70G (GGC→GGG) ‡	cyuA ←	putative L‑cysteine desulfidase CyuA
RA	3,256,443	C→A	7.7%	G70V (GGC→GTC) ‡	cyuA ←	putative L‑cysteine desulfidase CyuA
RA	3,256,450	C→T	7.7%	V68I (GTT→ATT)	cyuA ←	putative L‑cysteine desulfidase CyuA
RA	3,258,251	T→A	5.6%	intergenic (‑241/+34)	cyuP ← / ← tdcG	putative D/L‑serine transporter/L‑serine deaminase III
RA	3,263,500	G→A	13.7%	P54L (CCG→CTG) ‡	tdcD ←	propionate kinase
RA	3,263,501	G→C	13.6%	P54A (CCG→GCG) ‡	tdcD ←	propionate kinase
RA	3,263,502	T→C	14.2%	A53A (GCA→GCG)	tdcD ←	propionate kinase
RA	3,270,193	C→T	8.9%	intergenic (+591/+23)	yhaC → / ← rnpB	uncharacterized protein YhaC/RNase P catalytic RNA component
RA	3,270,195	A→C	12.7%	intergenic (+593/+21)	yhaC → / ← rnpB	uncharacterized protein YhaC/RNase P catalytic RNA component
RA	3,270,196	A→G	8.3%	intergenic (+594/+20)	yhaC → / ← rnpB	uncharacterized protein YhaC/RNase P catalytic RNA component
RA	3,276,886	C→A	7.8%	intergenic (+33/‑116)	garD → / → prlF	galactarate dehydratase/antitoxin PrlF
RA	3,276,887	T→C	7.6%	intergenic (+34/‑115)	garD → / → prlF	galactarate dehydratase/antitoxin PrlF
RA	3,276,890	G→A	7.3%	intergenic (+37/‑112)	garD → / → prlF	galactarate dehydratase/antitoxin PrlF
RA	3,276,891	T→G	8.3%	intergenic (+38/‑111)	garD → / → prlF	galactarate dehydratase/antitoxin PrlF
RA	3,295,238	C→T	6.7%	N613N (AAC→AAT)	lpoA →	outer membrane lipoprotein ‑ activator of MrcA activity
RA	3,295,239	G→C	6.9%	D614H (GAT→CAT) ‡	lpoA →	outer membrane lipoprotein ‑ activator of MrcA activity
RA	3,295,240	A→G	6.8%	D614G (GAT→GGT) ‡	lpoA →	outer membrane lipoprotein ‑ activator of MrcA activity
RA	3,298,432	G→C	5.1%	P139A (CCG→GCG)	yraR ←	putative nucleoside‑diphosphate‑sugar epimerase
RA	3,298,437	T→A	5.1%	N137I (AAC→ATC) ‡	yraR ←	putative nucleoside‑diphosphate‑sugar epimerase
RA	3,298,438	T→A	5.1%	N137Y (AAC→TAC) ‡	yraR ←	putative nucleoside‑diphosphate‑sugar epimerase
RA	3,298,443	G→C	5.1%	A135G (GCC→GGC)	yraR ←	putative nucleoside‑diphosphate‑sugar epimerase
RA	3,313,207	G→A	6.2%	intergenic (‑29/+135)	rbfA ← / ← infB	30S ribosome binding factor/translation initiation factor IF‑2
RA	3,313,208	T→A	7.1%	intergenic (‑30/+134)	rbfA ← / ← infB	30S ribosome binding factor/translation initiation factor IF‑2
RA	3,313,209	T→C	7.1%	intergenic (‑31/+133)	rbfA ← / ← infB	30S ribosome binding factor/translation initiation factor IF‑2
RA	3,313,756	A→T	8.4%	S753S (TCT→TCA)	infB ←	translation initiation factor IF‑2
RA	3,313,759	G→T	8.6%	A752A (GCC→GCA)	infB ←	translation initiation factor IF‑2
RA	3,313,762	A→C	8.0%	D751E (GAT→GAG)	infB ←	translation initiation factor IF‑2
RA	3,313,765	A→T	7.9%	A750A (GCT→GCA)	infB ←	translation initiation factor IF‑2
RA	3,322,040	A→G	7.9%	intergenic (‑427/+32)	yhbX ← / ← leuU	putative hydrolase, inner membrane/tRNA‑Leu
RA	3,322,048	T→G	8.7%	intergenic (‑435/+24)	yhbX ← / ← leuU	putative hydrolase, inner membrane/tRNA‑Leu
RA	3,322,049	T→A	8.7%	intergenic (‑436/+23)	yhbX ← / ← leuU	putative hydrolase, inner membrane/tRNA‑Leu
RA	3,322,050	T→A	8.6%	intergenic (‑437/+22)	yhbX ← / ← leuU	putative hydrolase, inner membrane/tRNA‑Leu
RA	3,322,051	C→A	9.3%	intergenic (‑438/+21)	yhbX ← / ← leuU	putative hydrolase, inner membrane/tRNA‑Leu
RA	3,324,952	A→G	10.7%	intergenic (‑41/+49)	folP ← / ← ftsH	dihydropteroate synthase/ATP‑dependent zinc metalloprotease FtsH
RA	3,324,955	A→G	10.8%	intergenic (‑44/+46)	folP ← / ← ftsH	dihydropteroate synthase/ATP‑dependent zinc metalloprotease FtsH
RA	3,324,956	C→T	9.9%	intergenic (‑45/+45)	folP ← / ← ftsH	dihydropteroate synthase/ATP‑dependent zinc metalloprotease FtsH
RA	3,324,959	C→T	10.9%	intergenic (‑48/+42)	folP ← / ← ftsH	dihydropteroate synthase/ATP‑dependent zinc metalloprotease FtsH
RA	3,328,182	A→T	8.0%	intergenic (+99/+57)	yhbY → / ← greA	ribosome assembly factor YhbY/transcription elongation factor GreA
RA	3,328,183	T→A	7.8%	intergenic (+100/+56)	yhbY → / ← greA	ribosome assembly factor YhbY/transcription elongation factor GreA
RA	3,328,184	A→T	7.8%	intergenic (+101/+55)	yhbY → / ← greA	ribosome assembly factor YhbY/transcription elongation factor GreA
RA	3,332,822	G→A	5.5%	intergenic (‑87/+40)	yhbE ← / ← rpmA	inner membrane protein YhbE/50S ribosomal subunit protein L27
RA	3,332,823	T→C	5.5%	intergenic (‑88/+39)	yhbE ← / ← rpmA	inner membrane protein YhbE/50S ribosomal subunit protein L27
RA	3,334,703	A→G	9.1%	intergenic (+22/‑206)	ispB → / → sfsB	all‑trans‑octaprenyl‑diphosphate synthase/putative transcriptional regulator SfsB
RA	3,334,704	G→C	9.0%	intergenic (+23/‑205)	ispB → / → sfsB	all‑trans‑octaprenyl‑diphosphate synthase/putative transcriptional regulator SfsB
RA	3,334,705	C→T	9.0%	intergenic (+24/‑204)	ispB → / → sfsB	all‑trans‑octaprenyl‑diphosphate synthase/putative transcriptional regulator SfsB
RA	3,350,316	A→G	6.1%	V48V (GTT→GTC) ‡	elbB ←	low activity glyoxalase ElbB
RA	3,350,317	A→T	6.6%	V48D (GTT→GAT) ‡	elbB ←	low activity glyoxalase ElbB
RA	3,350,318	C→T	5.9%	V48I (GTT→ATT) ‡	elbB ←	low activity glyoxalase ElbB
RA	3,360,643	T→A	7.7%	intergenic (+27/‑533)	gltD → / → gltF	glutamate synthase subunit GltD/periplasmic protein GltF
RA	3,360,644	G→C	7.8%	intergenic (+28/‑532)	gltD → / → gltF	glutamate synthase subunit GltD/periplasmic protein GltF
RA	3,360,645	T→A	7.8%	intergenic (+29/‑531)	gltD → / → gltF	glutamate synthase subunit GltD/periplasmic protein GltF
RA	3,361,697	C→G	6.0%	H174Q (CAC→CAG)	gltF →	periplasmic protein GltF
RA	3,368,142	A→T	7.9%	M106L (ATG→TTG)	yhcG →	DUF1016 domain‑containing protein YhcG
RA	3,368,219	G→A	5.7%	T131T (ACG→ACA)	yhcG →	DUF1016 domain‑containing protein YhcG
RA	3,368,220	C→G	5.7%	L132V (CTG→GTG) ‡	yhcG →	DUF1016 domain‑containing protein YhcG
RA	3,368,221	T→C	5.8%	L132P (CTG→CCG) ‡	yhcG →	DUF1016 domain‑containing protein YhcG
RA	3,370,703	G→A	7.8%	P112S (CCG→TCG)	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,370,704	A→C	7.8%	R111R (CGT→CGG)	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,370,708	G→C	8.0%	P110R (CCG→CGG) ‡	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,370,709	G→C	8.0%	P110A (CCG→GCG) ‡	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,370,713	G→T	8.6%	D108E (GAC→GAA) ‡	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,370,714	T→C	8.5%	D108G (GAC→GGC) ‡	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,371,064	A→C	9.3%	intergenic (‑28/+20)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑phosphate epimerase/N‑acetylneuraminate:H(+) symporter
RA	3,371,065	C→T	9.4%	intergenic (‑29/+19)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑phosphate epimerase/N‑acetylneuraminate:H(+) symporter
RA	3,371,068	A→G	9.0%	intergenic (‑32/+16)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑phosphate epimerase/N‑acetylneuraminate:H(+) symporter
RA	3,371,069	G→T	9.0%	intergenic (‑33/+15)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑phosphate epimerase/N‑acetylneuraminate:H(+) symporter
RA	3,376,262	C→A	5.4%	intergenic (+26/+17)	dcuD → / ← sspB	putative transporter DcuD/ClpXP protease specificity‑enhancing factor
RA	3,376,263	C→G	6.6%	intergenic (+27/+16)	dcuD → / ← sspB	putative transporter DcuD/ClpXP protease specificity‑enhancing factor
RA	3,376,264	T→G	5.6%	intergenic (+28/+15)	dcuD → / ← sspB	putative transporter DcuD/ClpXP protease specificity‑enhancing factor
RA	3,376,265	G→C	6.9%	intergenic (+29/+14)	dcuD → / ← sspB	putative transporter DcuD/ClpXP protease specificity‑enhancing factor
RA	3,377,768	C→T	5.0%	intergenic (‑348/+47)	sspA ← / ← rpsI	stringent starvation protein A/30S ribosomal subunit protein S9
RA	3,378,284	T→G	6.5%	K123T (AAA→ACA) ‡	rplM ←	50S ribosomal subunit protein L13
RA	3,378,285	T→A	6.6%	K123* (AAA→TAA) ‡	rplM ←	50S ribosomal subunit protein L13
RA	3,378,286	C→A	6.6%	L122L (CTG→CTT)	rplM ←	50S ribosomal subunit protein L13
RA	3,405,885	G→C	5.4%	E150D (GAG→GAC)	accB →	biotin carboxyl carrier protein
RA	3,407,293	T→A	6.5%	intergenic (+27/‑82)	accC → / → yhdT	biotin carboxylase/DUF997 domain‑containing protein YhdT
RA	3,407,294	T→A	6.5%	intergenic (+28/‑81)	accC → / → yhdT	biotin carboxylase/DUF997 domain‑containing protein YhdT
RA	3,407,295	T→A	6.5%	intergenic (+29/‑80)	accC → / → yhdT	biotin carboxylase/DUF997 domain‑containing protein YhdT
RA	3,423,229	T→G	7.6%	intergenic (+35/+194)	yhdZ → / ← rrfF	putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA
RA	3,423,230	T→A	7.6%	intergenic (+36/+193)	yhdZ → / ← rrfF	putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA
RA	3,423,231	T→A	7.6%	intergenic (+37/+192)	yhdZ → / ← rrfF	putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA
RA	3,423,232	C→A	7.1%	intergenic (+38/+191)	yhdZ → / ← rrfF	putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA
RA	3,423,620	A→G	8.0%	noncoding (36/76 nt)	thrV ←	tRNA‑Thr
RA	3,423,621	C→G	8.0%	noncoding (35/76 nt)	thrV ←	tRNA‑Thr
RA	3,423,622	C→T	8.0%	noncoding (34/76 nt)	thrV ←	tRNA‑Thr
RA	3,437,908	T→A	5.9%	intergenic (+14/‑116)	trkA → / → mscL	NAD‑binding component of Trk potassium transporters/large conductance mechanosensitive channel
RA	3,437,909	A→T	5.8%	intergenic (+15/‑115)	trkA → / → mscL	NAD‑binding component of Trk potassium transporters/large conductance mechanosensitive channel
RA	3,437,910	A→T	5.7%	intergenic (+16/‑114)	trkA → / → mscL	NAD‑binding component of Trk potassium transporters/large conductance mechanosensitive channel
RA	3,437,911	T→A	5.8%	intergenic (+17/‑113)	trkA → / → mscL	NAD‑binding component of Trk potassium transporters/large conductance mechanosensitive channel
RA	3,439,588	G→C	6.9%	intergenic (‑79/+28)	yhdN ← / ← rplQ	conserved protein YhdN/50S ribosomal subunit protein L17
RA	3,439,589	G→C	6.8%	intergenic (‑80/+27)	yhdN ← / ← rplQ	conserved protein YhdN/50S ribosomal subunit protein L17
RA	3,441,060	T→C	7.9%	K206E (AAG→GAG)	rpsD ←	30S ribosomal subunit protein S4
RA	3,441,061	G→C	7.6%	S205S (TCC→TCG) ‡	rpsD ←	30S ribosomal subunit protein S4
RA	3,441,062	G→A	8.0%	S205F (TCC→TTC) ‡	rpsD ←	30S ribosomal subunit protein S4
RA	3,442,572	A→G	6.2%	intergenic (‑101/+46)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,442,573	T→A	6.1%	intergenic (‑102/+45)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,442,574	C→T	6.1%	intergenic (‑103/+44)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,443,592	A→C	10.8%	M169R (ATG→AGG) ‡	secY ←	Sec translocon subunit SecY
RA	3,443,593	T→A	11.0%	M169L (ATG→TTG) ‡	secY ←	Sec translocon subunit SecY
RA	3,443,594	G→T	11.8%	T168T (ACC→ACA)	secY ←	Sec translocon subunit SecY
RA	3,458,416	T→A	7.6%	I26I (ATT→ATA)	gspE →	Type II secretion system protein GspE
RA	3,458,418	T→A	8.0%	I27N (ATT→AAT)	gspE →	Type II secretion system protein GspE
RA	3,458,420	T→A	8.0%	Y28N (TAT→AAT)	gspE →	Type II secretion system protein GspE
RA	3,470,058	T→A	5.2%	intergenic (‑205/+87)	chiA ← / ← tufA	endochitinase/translation elongation factor Tu 1
RA	3,470,106	C→T	5.6%	intergenic (‑253/+39)	chiA ← / ← tufA	endochitinase/translation elongation factor Tu 1
RA	3,470,107	G→T	5.6%	intergenic (‑254/+38)	chiA ← / ← tufA	endochitinase/translation elongation factor Tu 1
RA	3,470,108	A→C	5.6%	intergenic (‑255/+37)	chiA ← / ← tufA	endochitinase/translation elongation factor Tu 1
RA	3,470,109	A→G	5.6%	intergenic (‑256/+36)	chiA ← / ← tufA	endochitinase/translation elongation factor Tu 1
RA	3,476,585	G→A	10.5%	intergenic (‑145/+22)	yheO ← / ← fkpA	putative DNA‑binding transcriptional regulator YheO/peptidyl‑prolyl cis‑trans isomerase FkpA
RA	3,476,586	T→C	10.7%	intergenic (‑146/+21)	yheO ← / ← fkpA	putative DNA‑binding transcriptional regulator YheO/peptidyl‑prolyl cis‑trans isomerase FkpA
RA	3,477,340	T→G	5.1%	E27A (GAA→GCA) ‡	fkpA ←	peptidyl‑prolyl cis‑trans isomerase FkpA
RA	3,477,341	C→A	5.4%	E27* (GAA→TAA) ‡	fkpA ←	peptidyl‑prolyl cis‑trans isomerase FkpA
RA	3,477,345	A→T	5.1%	A25A (GCT→GCA)	fkpA ←	peptidyl‑prolyl cis‑trans isomerase FkpA
RA	3,480,662	T→A	10.3%	H167L (CAC→CTC)	kefG ←	protein required for KefB activity
RA	3,480,664	G→C	10.5%	S166R (AGC→AGG) ‡	kefG ←	protein required for KefB activity
RA	3,480,666	T→A	10.0%	S166C (AGC→TGC) ‡	kefG ←	protein required for KefB activity
RA	3,488,983	C→A	6.9%	V400L (GTG→TTG)	argD ←	N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase
RA	3,488,989	G→T	10.4%	H398N (CAC→AAC)	argD ←	N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase
RA	3,491,704	G→T	9.0%	intergenic (‑84/+21)	yhfG ← / ← ppiA	DUF2559 domain‑containing protein YhfG/peptidyl‑prolyl cis‑trans isomerase A
RA	3,491,705	A→C	10.6%	intergenic (‑85/+20)	yhfG ← / ← ppiA	DUF2559 domain‑containing protein YhfG/peptidyl‑prolyl cis‑trans isomerase A
RA	3,512,306	G→C	10.5%	I13M (ATC→ATG)	yhfZ ←	putative DNA‑binding transcriptional regulator YhfZ
RA	3,512,309	G→C	10.6%	V12V (GTC→GTG)	yhfZ ←	putative DNA‑binding transcriptional regulator YhfZ
RA	3,515,785	G→T	6.8%	L43L (CTC→CTA) ‡	dam ←	DNA adenine methyltransferase
RA	3,515,786	A→C	7.2%	L43R (CTC→CGC) ‡	dam ←	DNA adenine methyltransferase
RA	3,515,787	G→T	7.4%	L43I (CTC→ATC) ‡	dam ←	DNA adenine methyltransferase
RA	3,515,788	A→C	7.5%	F42L (TTT→TTG)	dam ←	DNA adenine methyltransferase
RA	3,522,778	C→G	6.6%	intergenic (‑27/‑93)	hofM ← / → mrcA	DNA utilization protein HofM/peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA
RA	3,522,779	T→A	7.0%	intergenic (‑28/‑92)	hofM ← / → mrcA	DNA utilization protein HofM/peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA
RA	3,522,780	C→G	7.0%	intergenic (‑29/‑91)	hofM ← / → mrcA	DNA utilization protein HofM/peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA
RA	3,530,671	A→C	10.6%	intergenic (+19/+44)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,530,672	G→C	11.0%	intergenic (+20/+43)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,530,673	G→C	10.8%	intergenic (+21/+42)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,530,674	G→T	11.0%	intergenic (+22/+41)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,537,322	T→A	5.3%	intergenic (+34/‑63)	greB → / → yhgF	transcription elongation factor GreB/putative RNA‑binding protein YhgF
RA	3,537,323	T→A	5.3%	intergenic (+35/‑62)	greB → / → yhgF	transcription elongation factor GreB/putative RNA‑binding protein YhgF
RA	3,537,324	T→A	5.3%	intergenic (+36/‑61)	greB → / → yhgF	transcription elongation factor GreB/putative RNA‑binding protein YhgF
RA	3,544,689	A→T	6.4%	R52R (CGT→CGA)	bioH ←	pimeloyl‑acyl carrier protein methyl ester esterase
RA	3,544,692	C→G	6.5%	G51G (GGG→GGC) ‡	bioH ←	pimeloyl‑acyl carrier protein methyl ester esterase
RA	3,544,693	C→G	6.5%	G51A (GGG→GCG) ‡	bioH ←	pimeloyl‑acyl carrier protein methyl ester esterase
RA	3,544,696	A→T	6.2%	F50Y (TTC→TAC)	bioH ←	pimeloyl‑acyl carrier protein methyl ester esterase
RA	3,546,228	T→A	7.9%	intergenic (+29/‑331)	nfuA → / → gntT	iron‑sulfur cluster carrier protein NfuA/high‑affinity gluconate transporter
RA	3,560,455:1	+G	100%	pseudogene (151/758 nt)	glpR ←	DNA‑binding transcriptional repressor GlpR
RA	3,561,969	A→T	5.3%	intergenic (‑146/‑44)	glpE ← / → glpD	thiosulfate sulfurtransferase GlpE/aerobic glycerol 3‑phosphate dehydrogenase
RA	3,561,972	A→T	5.2%	intergenic (‑149/‑41)	glpE ← / → glpD	thiosulfate sulfurtransferase GlpE/aerobic glycerol 3‑phosphate dehydrogenase
RA	3,570,878	A→G	5.3%	W148R (TGG→CGG)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,880	G→C	5.4%	P147R (CCG→CGG)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,884	T→C	5.4%	T146A (ACG→GCG)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,885	G→A	5.2%	R145R (CGC→CGT)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,889	G→C	5.4%	P144R (CCG→CGG)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,891	C→T	5.4%	P143P (CCG→CCA)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,577,657	A→G	6.0%	intergenic (‑65/+74)	gntK ← / ← gntR	D‑gluconate kinase, thermostable/DNA‑binding transcriptional repressor GntR
RA	3,577,660	C→T	6.0%	intergenic (‑68/+71)	gntK ← / ← gntR	D‑gluconate kinase, thermostable/DNA‑binding transcriptional repressor GntR
RA	3,578,609	T→G	9.1%	I40L (ATT→CTT)	gntR ←	DNA‑binding transcriptional repressor GntR
RA	3,578,610	C→A	9.0%	K39N (AAG→AAT)	gntR ←	DNA‑binding transcriptional repressor GntR
RA	3,585,060	C→G	6.3%	intergenic (+17/+21)	yrhB → / ← ggt	putative heat shock chaperone/glutathione hydrolase proenzyme
RA	3,585,061	C→T	6.2%	intergenic (+18/+20)	yrhB → / ← ggt	putative heat shock chaperone/glutathione hydrolase proenzyme
RA	3,585,062	A→G	6.1%	intergenic (+19/+19)	yrhB → / ← ggt	putative heat shock chaperone/glutathione hydrolase proenzyme
RA	3,585,063	C→G	6.1%	intergenic (+20/+18)	yrhB → / ← ggt	putative heat shock chaperone/glutathione hydrolase proenzyme
RA	3,594,070	G→A	6.5%	T46M (ACG→ATG) ‡	livG ←	branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivG
RA	3,594,071	T→C	6.5%	T46A (ACG→GCG) ‡	livG ←	branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivG
RA	3,598,473	A→G	5.2%	intergenic (+106/+82)	panZ → / ← livJ	PanD maturation factor/branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein
RA	3,598,474	A→C	5.2%	intergenic (+107/+81)	panZ → / ← livJ	PanD maturation factor/branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein
RA	3,598,480	T→A	5.3%	intergenic (+113/+75)	panZ → / ← livJ	PanD maturation factor/branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein
RA	3,598,481	T→A	5.3%	intergenic (+114/+74)	panZ → / ← livJ	PanD maturation factor/branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein
RA	3,598,487	G→T	6.5%	intergenic (+120/+68)	panZ → / ← livJ	PanD maturation factor/branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein
RA	3,598,488	C→T	6.5%	intergenic (+121/+67)	panZ → / ← livJ	PanD maturation factor/branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein
RA	3,601,505	A→C	8.3%	R194R (CGT→CGG) ‡	ftsX ←	cell division protein FtsX
RA	3,601,506	C→G	8.3%	R194P (CGT→CCT) ‡	ftsX ←	cell division protein FtsX
RA	3,601,507	G→T	8.4%	R194S (CGT→AGT) ‡	ftsX ←	cell division protein FtsX
RA	3,601,824	G→C	5.7%	P88R (CCC→CGC) ‡	ftsX ←	cell division protein FtsX
RA	3,601,825	G→C	5.7%	P88A (CCC→GCC) ‡	ftsX ←	cell division protein FtsX
RA	3,610,537	A→C	5.8%	P399P (CCT→CCG)	yhhS ←	putative transporter YhhS
RA	3,610,540	G→A	5.9%	V398V (GTC→GTT)	yhhS ←	putative transporter YhhS
RA	3,610,550	G→T	5.5%	P395Q (CCG→CAG)	yhhS ←	putative transporter YhhS
RA	3,614,830	G→A	8.5%	Q388Q (CAG→CAA)	nikA →	Ni(2(+)) ABC transporter periplasmic binding protein
RA	3,614,831	A→T	8.5%	I389F (ATT→TTT) ‡	nikA →	Ni(2(+)) ABC transporter periplasmic binding protein
RA	3,614,832	T→C	8.7%	I389T (ATT→ACT) ‡	nikA →	Ni(2(+)) ABC transporter periplasmic binding protein
RA	3,617,375	G→T	6.4%	A121S (GCC→TCC) ‡	nikD →	Ni(2(+)) ABC transporter ATP binding subunit NikD
RA	3,617,377	C→T	5.0%	A121A (GCC→GCT) ‡	nikD →	Ni(2(+)) ABC transporter ATP binding subunit NikD
RA	3,617,380	A→G	5.9%	I122M (ATA→ATG)	nikD →	Ni(2(+)) ABC transporter ATP binding subunit NikD
RA	3,617,382	A→C	7.0%	E123A (GAA→GCA)	nikD →	Ni(2(+)) ABC transporter ATP binding subunit NikD
RA	3,632,764	G→A	5.3%	intergenic (‑174/+88)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,632,766	C→G	5.3%	intergenic (‑176/+86)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,632,767	A→T	5.4%	intergenic (‑177/+85)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,632,770	A→T	5.3%	intergenic (‑180/+82)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,632,773	A→T	5.2%	intergenic (‑183/+79)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,632,774	C→G	5.5%	intergenic (‑184/+78)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,636,004	C→T	7.7%	intergenic (+111/+204)	yhiM → / ← yhiN	inner membrane protein with a role in acid resistance/putative oxidoreductase YhiN
RA	3,636,007	A→C	7.8%	intergenic (+114/+201)	yhiM → / ← yhiN	inner membrane protein with a role in acid resistance/putative oxidoreductase YhiN
RA	3,636,008	G→T	7.8%	intergenic (+115/+200)	yhiM → / ← yhiN	inner membrane protein with a role in acid resistance/putative oxidoreductase YhiN
RA	3,636,011	A→G	7.6%	intergenic (+118/+197)	yhiM → / ← yhiN	inner membrane protein with a role in acid resistance/putative oxidoreductase YhiN
RA	3,636,747	T→C	8.8%	T222A (ACC→GCC)	yhiN ←	putative oxidoreductase YhiN
RA	3,636,748	G→A	6.6%	G221G (GGC→GGT)	yhiN ←	putative oxidoreductase YhiN
RA	3,637,645:1	+T	90.7%	coding (4/1500 nt)	pitA →	metal phosphate:H(+) symporter PitA
RA	3,639,224	A→C	5.3%	intergenic (+83/+161)	pitA → / ← uspB	metal phosphate:H(+) symporter PitA/putative universal stress (ethanol tolerance) protein B
RA	3,639,230	T→G	5.3%	intergenic (+89/+155)	pitA → / ← uspB	metal phosphate:H(+) symporter PitA/putative universal stress (ethanol tolerance) protein B
RA	3,639,231	T→C	5.3%	intergenic (+90/+154)	pitA → / ← uspB	metal phosphate:H(+) symporter PitA/putative universal stress (ethanol tolerance) protein B
RA	3,647,670	T→C	8.7%	intergenic (+19/+35)	gor → / ← dinQ	glutathione reductase (NADPH)/UV inducible membrane toxin DinQ
RA	3,647,672	G→C	9.4%	intergenic (+21/+33)	gor → / ← dinQ	glutathione reductase (NADPH)/UV inducible membrane toxin DinQ
RA	3,647,673	T→A	8.6%	intergenic (+22/+32)	gor → / ← dinQ	glutathione reductase (NADPH)/UV inducible membrane toxin DinQ
RA	3,647,674	G→C	9.3%	intergenic (+23/+31)	gor → / ← dinQ	glutathione reductase (NADPH)/UV inducible membrane toxin DinQ
RA	3,647,676	G→A	8.5%	intergenic (+25/+29)	gor → / ← dinQ	glutathione reductase (NADPH)/UV inducible membrane toxin DinQ
RA	3,648,128	G→T	5.7%	noncoding (66/84 nt)	agrA →	small RNA AgrA
RA	3,648,129	C→T	5.7%	noncoding (67/84 nt)	agrA →	small RNA AgrA
RA	3,648,130	A→T	5.6%	noncoding (68/84 nt)	agrA →	small RNA AgrA
RA	3,648,131	A→G	5.6%	noncoding (69/84 nt)	agrA →	small RNA AgrA
RA	3,648,132	A→C	5.4%	noncoding (70/84 nt)	agrA →	small RNA AgrA
RA	3,654,551	T→G	7.5%	intergenic (+24/‑132)	slp → / → dctR	starvation lipoprotein/putative DNA‑binding transcriptional regulator DctR
RA	3,654,552	T→A	7.5%	intergenic (+25/‑131)	slp → / → dctR	starvation lipoprotein/putative DNA‑binding transcriptional regulator DctR
RA	3,654,553	C→G	7.5%	intergenic (+26/‑130)	slp → / → dctR	starvation lipoprotein/putative DNA‑binding transcriptional regulator DctR
RA	3,654,554	T→A	7.5%	intergenic (+27/‑129)	slp → / → dctR	starvation lipoprotein/putative DNA‑binding transcriptional regulator DctR
RA	3,654,555	C→A	8.5%	intergenic (+28/‑128)	slp → / → dctR	starvation lipoprotein/putative DNA‑binding transcriptional regulator DctR
RA	3,657,599	T→A	7.2%	intergenic (+32/+387)	hdeD → / ← arrS	acid‑resistance membrane protein/small regulatory RNA ArrS
RA	3,657,601	G→C	7.2%	intergenic (+34/+385)	hdeD → / ← arrS	acid‑resistance membrane protein/small regulatory RNA ArrS
RA	3,657,603	T→A	7.4%	intergenic (+36/+383)	hdeD → / ← arrS	acid‑resistance membrane protein/small regulatory RNA ArrS
RA	3,658,002	C→T	10.5%	noncoding (53/69 nt)	arrS ←	small regulatory RNA ArrS
RA	3,658,003	C→G	10.5%	noncoding (52/69 nt)	arrS ←	small regulatory RNA ArrS
RA	3,658,004	A→G	10.4%	noncoding (51/69 nt)	arrS ←	small regulatory RNA ArrS
RA	3,667,459	A→C	6.8%	V41G (GTC→GGC) ‡	gadA ←	glutamate decarboxylase A
RA	3,667,460	C→G	6.8%	V41L (GTC→CTC) ‡	gadA ←	glutamate decarboxylase A
RA	3,667,463	C→G	7.4%	D40H (GAT→CAT)	gadA ←	glutamate decarboxylase A
RA	3,667,466	C→G	6.7%	D39H (GAT→CAT)	gadA ←	glutamate decarboxylase A
RA	3,667,467	G→T	6.8%	R38R (CGC→CGA)	gadA ←	glutamate decarboxylase A
RA	3,667,762	A→G	5.1%	intergenic (‑182/+29)	gadA ← / ← ccp	glutamate decarboxylase A/cytochrome c peroxidase
RA	3,667,768	T→C	5.1%	intergenic (‑188/+23)	gadA ← / ← ccp	glutamate decarboxylase A/cytochrome c peroxidase
RA	3,667,769	G→A	5.1%	intergenic (‑189/+22)	gadA ← / ← ccp	glutamate decarboxylase A/cytochrome c peroxidase
RA	3,667,770	C→A	6.0%	intergenic (‑190/+21)	gadA ← / ← ccp	glutamate decarboxylase A/cytochrome c peroxidase
RA	3,667,775	C→T	5.3%	intergenic (‑195/+16)	gadA ← / ← ccp	glutamate decarboxylase A/cytochrome c peroxidase
RA	3,668,181	C→T	5.4%	T336T (ACG→ACA)	ccp ←	cytochrome c peroxidase
RA	3,668,185	A→G	5.5%	L335P (CTG→CCG)	ccp ←	cytochrome c peroxidase
RA	3,672,986	T→G	5.5%	R191R (CGT→CGG)	yhjC →	putative DNA‑binding transcriptional regulator YhjC
RA	3,672,988	A→G	5.6%	Y192C (TAT→TGT)	yhjC →	putative DNA‑binding transcriptional regulator YhjC
RA	3,672,991	C→T	5.5%	T193I (ACA→ATA)	yhjC →	putative DNA‑binding transcriptional regulator YhjC
RA	3,672,993	C→A	5.2%	P194T (CCG→ACG)	yhjC →	putative DNA‑binding transcriptional regulator YhjC
RA	3,674,389	C→A	5.6%	intergenic (+14/‑397)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,674,395	A→T	7.4%	intergenic (+20/‑391)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,674,396	A→T	7.4%	intergenic (+21/‑390)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,674,402	T→G	7.9%	intergenic (+27/‑384)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,674,403	T→C	7.9%	intergenic (+28/‑383)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,677,828	T→G	6.4%	I175L (ATT→CTT)	yhjG ←	AsmA family protein YhjG
RA	3,677,833	A→G	6.3%	I173T (ATC→ACC) ‡	yhjG ←	AsmA family protein YhjG
RA	3,677,834	T→A	6.2%	I173F (ATC→TTC) ‡	yhjG ←	AsmA family protein YhjG
RA	3,677,835	C→T	6.3%	R172R (CGG→CGA)	yhjG ←	AsmA family protein YhjG
RA	3,677,840	C→A	6.3%	G171W (GGG→TGG)	yhjG ←	AsmA family protein YhjG
RA	3,681,133	C→G	5.0%	V270L (GTG→CTG)	yhjJ ←	peptidase M16 family protein
RA	3,681,134	C→T	5.1%	A269A (GCG→GCA)	yhjJ ←	peptidase M16 family protein
RA	3,689,724	G→C	5.5%	P180A (CCC→GCC)	bcsZ ←	endo‑1,4‑D‑glucanase
RA	3,692,676	C→A	5.7%	R854L (CGC→CTC)	bcsA ←	cellulose synthase catalytic subunit
RA	3,700,416	T→C	9.8%	intergenic (+217/‑147)	rdlD → / → yhjV	antisense regulatory RNA RdlD/putative transporter YhjV
RA	3,700,418	G→A	9.9%	intergenic (+219/‑145)	rdlD → / → yhjV	antisense regulatory RNA RdlD/putative transporter YhjV
RA	3,700,419	T→C	10.0%	intergenic (+220/‑144)	rdlD → / → yhjV	antisense regulatory RNA RdlD/putative transporter YhjV
RA	3,700,421	G→A	10.1%	intergenic (+222/‑142)	rdlD → / → yhjV	antisense regulatory RNA RdlD/putative transporter YhjV
RA	3,702,835	G→A	7.1%	L12L (CTG→TTG)	dppF ←	dipeptide ABC transporter ATP binding subunit DppF
RA	3,702,837	G→C	7.1%	P11R (CCG→CGG)	dppF ←	dipeptide ABC transporter ATP binding subunit DppF
RA	3,702,839	T→C	7.6%	Q10Q (CAA→CAG)	dppF ←	dipeptide ABC transporter ATP binding subunit DppF
RA	3,710,703	G→A	5.5%	intergenic (‑228/+96)	eptB ← / ← yhjX	Kdo2‑lipid A phosphoethanolamine 7''‑transferase/putative pyruvate transporter
RA	3,710,708	T→C	5.4%	intergenic (‑233/+91)	eptB ← / ← yhjX	Kdo2‑lipid A phosphoethanolamine 7''‑transferase/putative pyruvate transporter
RA	3,714,163:1	+T	9.7%	coding (2232/2334 nt)	bisC ←	biotin sulfoxide reductase
RA	3,714,168	Δ1 bp	9.2%	coding (2227/2334 nt)	bisC ←	biotin sulfoxide reductase
RA	3,720,294	T→C	5.6%	intergenic (+33/+154)	cspA → / ← hokA	cold shock protein CspA/small toxic polypeptide
RA	3,720,299	T→A	5.6%	intergenic (+38/+149)	cspA → / ← hokA	cold shock protein CspA/small toxic polypeptide
RA	3,720,300	T→A	6.1%	intergenic (+39/+148)	cspA → / ← hokA	cold shock protein CspA/small toxic polypeptide
RA	3,720,305	G→A	5.7%	intergenic (+44/+143)	cspA → / ← hokA	cold shock protein CspA/small toxic polypeptide
RA	3,728,215	T→A	10.5%	K386I (AAA→ATA)	xylB ←	xylulokinase
RA	3,728,217	A→T	10.0%	I385I (ATT→ATA) ‡	xylB ←	xylulokinase
RA	3,728,219	T→A	10.0%	I385F (ATT→TTT) ‡	xylB ←	xylulokinase
RA	3,732,136	A→C	9.3%	intergenic (+13/‑65)	xylF → / → xylG	xylose ABC transporter periplasmic binding protein/xylose ABC transporter ATP binding subunit
RA	3,732,139	G→T	9.4%	intergenic (+16/‑62)	xylF → / → xylG	xylose ABC transporter periplasmic binding protein/xylose ABC transporter ATP binding subunit
RA	3,732,141	G→C	9.1%	intergenic (+18/‑60)	xylF → / → xylG	xylose ABC transporter periplasmic binding protein/xylose ABC transporter ATP binding subunit
RA	3,732,143	A→C	9.0%	intergenic (+20/‑58)	xylF → / → xylG	xylose ABC transporter periplasmic binding protein/xylose ABC transporter ATP binding subunit
RA	3,732,146	G→T	8.3%	intergenic (+23/‑55)	xylF → / → xylG	xylose ABC transporter periplasmic binding protein/xylose ABC transporter ATP binding subunit
RA	3,741,089	G→T	5.7%	intergenic (+131/+20)	avtA → / ← ysaA	valine‑‑pyruvate aminotransferase/putative electron transport protein YsaA
RA	3,741,090	A→C	5.7%	intergenic (+132/+19)	avtA → / ← ysaA	valine‑‑pyruvate aminotransferase/putative electron transport protein YsaA
RA	3,741,091	G→T	5.7%	intergenic (+133/+18)	avtA → / ← ysaA	valine‑‑pyruvate aminotransferase/putative electron transport protein YsaA
RA	3,741,092	A→C	5.7%	intergenic (+134/+17)	avtA → / ← ysaA	valine‑‑pyruvate aminotransferase/putative electron transport protein YsaA
RA	3,747,168:1	+C	6.5%	coding (85/1497 nt)	lyxK →	L‑xylulose kinase
RA	3,747,173	Δ1 bp	6.7%	coding (90/1497 nt)	lyxK →	L‑xylulose kinase
RA	3,748,110	C→A	5.9%	L343M (CTG→ATG) ‡	lyxK →	L‑xylulose kinase
RA	3,748,111	T→G	5.9%	L343R (CTG→CGG) ‡	lyxK →	L‑xylulose kinase
RA	3,748,113	T→A	6.0%	Y344N (TAC→AAC)	lyxK →	L‑xylulose kinase
RA	3,752,107:1	+G	5.9%	coding (116/975 nt)	yiaU →	putative LysR‑type DNA‑binding transcriptional regulator YiaU
RA	3,752,112	Δ1 bp	5.8%	coding (121/975 nt)	yiaU →	putative LysR‑type DNA‑binding transcriptional regulator YiaU
RA	3,758,650	A→G	5.2%	I404I (ATT→ATC)	selB ←	selenocysteyl‑tRNA‑specific translation elongation factor
RA	3,758,656	A→T	5.9%	G402G (GGT→GGA) ‡	selB ←	selenocysteyl‑tRNA‑specific translation elongation factor
RA	3,758,657	C→T	5.2%	G402D (GGT→GAT) ‡	selB ←	selenocysteyl‑tRNA‑specific translation elongation factor
RA	3,770,646	G→T	13.4%	P245Q (CCG→CAG)	yibH ←	inner membrane protein YibH
RA	3,770,649	A→C	12.2%	L244W (TTG→TGG) ‡	yibH ←	inner membrane protein YibH
RA	3,770,650	A→T	12.2%	L244M (TTG→ATG) ‡	yibH ←	inner membrane protein YibH
RA	3,770,651	G→T	13.3%	A243A (GCC→GCA)	yibH ←	inner membrane protein YibH
RA	3,770,654	A→C	12.8%	A242A (GCT→GCG)	yibH ←	inner membrane protein YibH
RA	3,776,262	G→T	6.9%	S40Y (TCC→TAC) ‡	yibT ←	protein YibT
RA	3,776,263	A→C	6.9%	S40A (TCC→GCC) ‡	yibT ←	protein YibT
RA	3,781,126	G→T	8.2%	intergenic (+109/‑89)	lldD → / → trmL	L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase
RA	3,781,131	T→G	9.6%	intergenic (+114/‑84)	lldD → / → trmL	L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase
RA	3,781,132	C→G	7.1%	intergenic (+115/‑83)	lldD → / → trmL	L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase
RA	3,781,133	C→A	7.0%	intergenic (+116/‑82)	lldD → / → trmL	L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase
RA	3,781,138	A→C	8.9%	intergenic (+121/‑77)	lldD → / → trmL	L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase
RA	3,788,856	T→G	7.5%	A252A (GCT→GCG)	yibQ →	divergent polysaccharide deacetylase domain‑containing protein YibQ
RA	3,788,861	C→A	7.4%	P254H (CCT→CAT)	yibQ →	divergent polysaccharide deacetylase domain‑containing protein YibQ
RA	3,788,863	G→C	7.4%	D255H (GAT→CAT) ‡	yibQ →	divergent polysaccharide deacetylase domain‑containing protein YibQ
RA	3,788,865	T→G	7.5%	D255E (GAT→GAG) ‡	yibQ →	divergent polysaccharide deacetylase domain‑containing protein YibQ
RA	3,788,870	C→A	7.3%	P257Q (CCG→CAG)	yibQ →	divergent polysaccharide deacetylase domain‑containing protein YibQ
RA	3,790,300	A→T	10.1%	intergenic (‑219/+20)	waaH ← / ← tdh	UDP‑glucuronate:LPS(HepIII) glycosyltransferase/threonine dehydrogenase
RA	3,790,303	A→T	10.1%	intergenic (‑222/+17)	waaH ← / ← tdh	UDP‑glucuronate:LPS(HepIII) glycosyltransferase/threonine dehydrogenase
RA	3,796,006	T→C	6.0%	S10P (TCG→CCG) ‡	waaC →	ADP‑heptose:LPS heptosyltransferase 1
RA	3,796,008	G→C	5.9%	S10S (TCG→TCC) ‡	waaC →	ADP‑heptose:LPS heptosyltransferase 1
RA	3,796,011	G→C	6.1%	M11I (ATG→ATC)	waaC →	ADP‑heptose:LPS heptosyltransferase 1
RA	3,796,013	G→A	6.0%	G12D (GGC→GAC)	waaC →	ADP‑heptose:LPS heptosyltransferase 1
RA	3,798,234	A→T	7.7%	intergenic (+27/+5)	waaL → / ← waaU	O‑antigen ligase/putative ADP‑heptose:LPS heptosyltransferase 4
RA	3,798,235	A→T	8.0%	intergenic (+28/+4)	waaL → / ← waaU	O‑antigen ligase/putative ADP‑heptose:LPS heptosyltransferase 4
RA	3,802,105	T→A	7.2%	K318N (AAA→AAT) ‡	waaO ←	UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase
RA	3,802,106	T→A	7.3%	K318I (AAA→ATA) ‡	waaO ←	UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase
RA	3,802,107	T→A	7.3%	K318* (AAA→TAA) ‡	waaO ←	UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase
RA	3,815,106	C→A	8.2%	intergenic (+16/+21)	slmA → / ← pyrE	nucleoid occlusion factor SlmA/orotate phosphoribosyltransferase
RA	3,815,107	T→A	8.1%	intergenic (+17/+20)	slmA → / ← pyrE	nucleoid occlusion factor SlmA/orotate phosphoribosyltransferase
RA	3,815,108	T→A	8.1%	intergenic (+18/+19)	slmA → / ← pyrE	nucleoid occlusion factor SlmA/orotate phosphoribosyltransferase
RA	3,815,109	T→G	7.9%	intergenic (+19/+18)	slmA → / ← pyrE	nucleoid occlusion factor SlmA/orotate phosphoribosyltransferase
RA	3,815,816	C→G	11.8%	intergenic (‑48/+47)	pyrE ← / ← rph	orotate phosphoribosyltransferase/truncated RNase PH
RA	3,815,819	C→G	13.0%	intergenic (‑51/+44)	pyrE ← / ← rph	orotate phosphoribosyltransferase/truncated RNase PH
MC JC	3,815,859	Δ82 bp	100%		[rph]	[rph]
RA	3,817,705	A→T	6.5%	intergenic (+166/‑55)	yicC → / → dinD	UPF0701 family protein YicC/DNA damage‑inducible protein D
RA	3,817,708	A→T	6.5%	intergenic (+169/‑52)	yicC → / → dinD	UPF0701 family protein YicC/DNA damage‑inducible protein D
RA	3,820,243:1	+T	5.6%	coding (928/1683 nt)	ligB ←	DNA ligase B
RA	3,820,248	Δ1 bp	5.7%	coding (923/1683 nt)	ligB ←	DNA ligase B
RA	3,827,593	T→A	5.4%	Q358L (CAG→CTG) ‡	gltS ←	glutamate:sodium symporter
RA	3,827,594	G→A	5.4%	Q358* (CAG→TAG) ‡	gltS ←	glutamate:sodium symporter
RA	3,827,599	T→C	5.3%	N356S (AAC→AGC) ‡	gltS ←	glutamate:sodium symporter
RA	3,827,600	T→A	5.3%	N356Y (AAC→TAC) ‡	gltS ←	glutamate:sodium symporter
RA	3,832,188	A→T	8.4%	intergenic (+22/+31)	yicH → / ← yicI	AsmA famly protein YicH/alpha‑D‑xyloside xylohydrolase
RA	3,832,191	C→G	8.3%	intergenic (+25/+28)	yicH → / ← yicI	AsmA famly protein YicH/alpha‑D‑xyloside xylohydrolase
RA	3,832,194	A→T	8.2%	intergenic (+28/+25)	yicH → / ← yicI	AsmA famly protein YicH/alpha‑D‑xyloside xylohydrolase
RA	3,832,797	T→G	7.4%	N581H (AAC→CAC)	yicI ←	alpha‑D‑xyloside xylohydrolase
RA	3,832,800	C→A	7.3%	A580S (GCG→TCG)	yicI ←	alpha‑D‑xyloside xylohydrolase
RA	3,845,746	G→A	6.0%	intergenic (+16/+30)	adeD → / ← uhpT	adenine deaminase/hexose‑6‑phosphate:phosphate antiporter
RA	3,845,748	C→G	6.0%	intergenic (+18/+28)	adeD → / ← uhpT	adenine deaminase/hexose‑6‑phosphate:phosphate antiporter
RA	3,845,750	T→C	6.1%	intergenic (+20/+26)	adeD → / ← uhpT	adenine deaminase/hexose‑6‑phosphate:phosphate antiporter
RA	3,846,197	C→A	5.4%	G324V (GGT→GTT)	uhpT ←	hexose‑6‑phosphate:phosphate antiporter
RA	3,846,200	T→G	6.2%	N323T (AAC→ACC)	uhpT ←	hexose‑6‑phosphate:phosphate antiporter
RA	3,850,763	C→T	6.3%	intergenic (‑37/+39)	uhpA ← / ← ilvN	DNA‑binding transcriptional activator UhpA/acetohydroxy acid synthase I subunit IlvN
RA	3,850,765	T→G	6.3%	intergenic (‑39/+37)	uhpA ← / ← ilvN	DNA‑binding transcriptional activator UhpA/acetohydroxy acid synthase I subunit IlvN
RA	3,850,767	A→T	6.7%	intergenic (‑41/+35)	uhpA ← / ← ilvN	DNA‑binding transcriptional activator UhpA/acetohydroxy acid synthase I subunit IlvN
RA	3,850,769	C→A	6.1%	intergenic (‑43/+33)	uhpA ← / ← ilvN	DNA‑binding transcriptional activator UhpA/acetohydroxy acid synthase I subunit IlvN
RA	3,850,771	A→G	6.1%	intergenic (‑45/+31)	uhpA ← / ← ilvN	DNA‑binding transcriptional activator UhpA/acetohydroxy acid synthase I subunit IlvN
RA	3,852,553	C→A	5.2%	A78S (GCG→TCG)	ilvB ←	acetohydroxy acid synthase I subunit IlvB
RA	3,852,558	T→A	6.7%	K76I (AAA→ATA) ‡	ilvB ←	acetohydroxy acid synthase I subunit IlvB
RA	3,852,559	T→A	6.3%	K76* (AAA→TAA) ‡	ilvB ←	acetohydroxy acid synthase I subunit IlvB
RA	3,852,564	T→G	6.8%	D74A (GAC→GCC)	ilvB ←	acetohydroxy acid synthase I subunit IlvB
RA	3,853,675	A→T	5.2%	intergenic (+33/‑247)	tisB → / → emrD	membrane‑depolarizing toxin TisB/multidrug efflux pump EmrD
RA	3,853,676	A→T	5.2%	intergenic (+34/‑246)	tisB → / → emrD	membrane‑depolarizing toxin TisB/multidrug efflux pump EmrD
RA	3,853,677	A→C	5.2%	intergenic (+35/‑245)	tisB → / → emrD	membrane‑depolarizing toxin TisB/multidrug efflux pump EmrD
RA	3,874,048	T→G	5.9%	K143Q (AAA→CAA)	dgoK ←	2‑dehydro‑3‑deoxygalactonokinase
RA	3,874,049	G→C	5.8%	C142W (TGC→TGG) ‡	dgoK ←	2‑dehydro‑3‑deoxygalactonokinase
RA	3,874,050	C→A	5.8%	C142F (TGC→TTC) ‡	dgoK ←	2‑dehydro‑3‑deoxygalactonokinase
RA	3,882,514	G→T	5.7%	P406T (CCG→ACG)	dnaA ←	chromosomal replication initiator protein DnaA
RA	3,882,515	A→C	5.5%	R405R (CGT→CGG)	dnaA ←	chromosomal replication initiator protein DnaA
RA	3,888,212	Δ1 bp	8.4%	intergenic (+20/‑223)	mnmE → / → tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
RA	3,888,219	T→A	8.7%	intergenic (+27/‑216)	mnmE → / → tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
RA	3,888,224:1	+A	8.6%	intergenic (+32/‑211)	mnmE → / → tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
RA	3,897,613	G→A	10.3%	P36P (CCG→CCA)	cbrB →	putative inner membrane protein
RA	3,897,614	C→G	10.2%	L37V (CTG→GTG) ‡	cbrB →	putative inner membrane protein
RA	3,897,615	T→C	10.3%	L37P (CTG→CCG) ‡	cbrB →	putative inner membrane protein
RA	3,900,542	A→T	10.0%	I12I (ATT→ATA)	yieL ←	putative hydrolase YieL
RA	3,900,545	A→T	9.3%	A11A (GCT→GCA)	yieL ←	putative hydrolase YieL
RA	3,906,256	A→T	6.0%	F104L (TTT→TTA)	bglG ←	transcriptional antiterminator BglG
RA	3,906,262	G→A	6.1%	C102C (TGC→TGT) ‡	bglG ←	transcriptional antiterminator BglG
RA	3,906,264	A→C	6.2%	C102G (TGC→GGC) ‡	bglG ←	transcriptional antiterminator BglG
RA	3,906,267	G→T	6.2%	H101N (CAT→AAT)	bglG ←	transcriptional antiterminator BglG
RA	3,906,269	T→C	6.1%	D100G (GAC→GGC)	bglG ←	transcriptional antiterminator BglG
RA	3,906,275	A→T	7.1%	L98Q (CTA→CAA)	bglG ←	transcriptional antiterminator BglG
RA	3,911,816	C→T	5.5%	intergenic (‑291/+23)	pstS ← / ← glmS	phosphate ABC transporter periplasmic binding protein/L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase
RA	3,911,819	T→G	5.8%	intergenic (‑294/+20)	pstS ← / ← glmS	phosphate ABC transporter periplasmic binding protein/L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase
RA	3,911,822	C→A	5.8%	intergenic (‑297/+17)	pstS ← / ← glmS	phosphate ABC transporter periplasmic binding protein/L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase
RA	3,911,825	A→G	6.0%	intergenic (‑300/+14)	pstS ← / ← glmS	phosphate ABC transporter periplasmic binding protein/L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase
RA	3,913,989	A→T	5.2%	G404G (GGT→GGA)	glmU ←	fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase
RA	3,915,373	C→T	6.3%	intergenic (‑173/+180)	glmU ← / ← atpC	fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase/ATP synthase F1 complex subunit epsilon
RA	3,915,375	G→C	6.3%	intergenic (‑175/+178)	glmU ← / ← atpC	fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase/ATP synthase F1 complex subunit epsilon
RA	3,915,377	A→G	6.4%	intergenic (‑177/+176)	glmU ← / ← atpC	fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase/ATP synthase F1 complex subunit epsilon
RA	3,917,695	A→C	7.0%	L191V (TTA→GTA)	atpG ←	ATP synthase F1 complex subunit gamma
RA	3,917,781	T→A	5.3%	E162V (GAA→GTA)	atpG ←	ATP synthase F1 complex subunit gamma
RA	3,917,784	T→A	6.0%	D161V (GAC→GTC)	atpG ←	ATP synthase F1 complex subunit gamma
RA	3,917,787	T→A	5.3%	Y160F (TAC→TTC)	atpG ←	ATP synthase F1 complex subunit gamma
RA	3,918,291	C→T	5.4%	intergenic (‑26/+25)	atpG ← / ← atpA	ATP synthase F1 complex subunit gamma/ATP synthase F1 complex subunit alpha
RA	3,918,296	C→T	5.4%	intergenic (‑31/+20)	atpG ← / ← atpA	ATP synthase F1 complex subunit gamma/ATP synthase F1 complex subunit alpha
RA	3,918,299	A→G	5.1%	intergenic (‑34/+17)	atpG ← / ← atpA	ATP synthase F1 complex subunit gamma/ATP synthase F1 complex subunit alpha
RA	3,918,304	A→G	6.4%	intergenic (‑39/+12)	atpG ← / ← atpA	ATP synthase F1 complex subunit gamma/ATP synthase F1 complex subunit alpha
RA	3,918,916	T→A	8.0%	K314N (AAA→AAT) ‡	atpA ←	ATP synthase F1 complex subunit alpha
RA	3,918,917	T→A	7.9%	K314I (AAA→ATA) ‡	atpA ←	ATP synthase F1 complex subunit alpha
RA	3,918,918	T→A	8.0%	K314* (AAA→TAA) ‡	atpA ←	ATP synthase F1 complex subunit alpha
RA	3,920,796	T→C	6.0%	A31A (GCA→GCG)	atpF ←	ATP synthase Fo complex subunit b
RA	3,920,809	G→A	5.2%	P27L (CCG→CTG)	atpF ←	ATP synthase Fo complex subunit b
RA	3,923,717	G→A	5.9%	intergenic (‑37/+27)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,923,718	G→C	5.7%	intergenic (‑38/+26)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,923,719	G→C	5.9%	intergenic (‑39/+25)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,923,720	T→C	5.9%	intergenic (‑40/+24)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,927,123	A→T	11.0%	intergenic (‑120/‑32)	asnC ← / → asnA	DNA‑binding transcriptional dual regulator AsnC/asparagine synthetase A
RA	3,927,124	T→G	10.0%	intergenic (‑121/‑31)	asnC ← / → asnA	DNA‑binding transcriptional dual regulator AsnC/asparagine synthetase A
RA	3,927,125	C→A	10.1%	intergenic (‑122/‑30)	asnC ← / → asnA	DNA‑binding transcriptional dual regulator AsnC/asparagine synthetase A
RA	3,927,126	A→T	11.0%	intergenic (‑123/‑29)	asnC ← / → asnA	DNA‑binding transcriptional dual regulator AsnC/asparagine synthetase A
RA	3,947,048	G→T	5.5%	intergenic (+16/+80)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,947,049	A→T	5.5%	intergenic (+17/+79)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,947,050	A→T	5.5%	intergenic (+18/+78)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,947,051	A→C	5.4%	intergenic (+19/+77)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,959,924	A→T	5.5%	intergenic (‑111/+88)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C/putative toxin YifN
RA	3,959,925	A→T	6.2%	intergenic (‑112/+87)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C/putative toxin YifN
RA	3,959,926	A→T	5.5%	intergenic (‑113/+86)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C/putative toxin YifN
RA	3,963,415	A→C	6.1%	L272R (CTG→CGG)	gpp ←	guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase
RA	3,966,768	G→T	10.0%	E118* (GAA→TAA) ‡	rho →	transcription termination factor Rho
RA	3,966,769	A→T	10.1%	E118V (GAA→GTA) ‡	rho →	transcription termination factor Rho
RA	3,966,770	A→C	10.2%	E118D (GAA→GAC) ‡	rho →	transcription termination factor Rho
RA	3,969,429	A→C	7.0%	K133N (AAA→AAC)	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,434	A→C	7.3%	D135A (GAT→GCT) ‡	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,435	T→A	7.1%	D135E (GAT→GAA) ‡	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,436	G→T	7.1%	A136S (GCG→TCG)	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,441	G→T	5.7%	A137A (GCG→GCT)	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,970,813	Δ1 bp	7.3%	coding (681/1131 nt)	wecB →	UDP‑N‑acetylglucosamine 2‑epimerase
RA	3,970,817:1	+G	7.4%	coding (685/1131 nt)	wecB →	UDP‑N‑acetylglucosamine 2‑epimerase
RA	3,971,439	T→C	5.6%	T60T (ACT→ACC)	wecC →	UDP‑N‑acetyl‑D‑mannosamine dehydrogenase
RA	3,971,443	G→T	5.5%	V62L (GTA→TTA)	wecC →	UDP‑N‑acetyl‑D‑mannosamine dehydrogenase
RA	3,971,446	G→T	5.1%	E63* (GAA→TAA) ‡	wecC →	UDP‑N‑acetyl‑D‑mannosamine dehydrogenase
RA	3,971,448	A→C	5.3%	E63D (GAA→GAC) ‡	wecC →	UDP‑N‑acetyl‑D‑mannosamine dehydrogenase
RA	3,971,452	G→A	5.1%	G65S (GGT→AGT)	wecC →	UDP‑N‑acetyl‑D‑mannosamine dehydrogenase
RA	3,972,673	A→C	6.0%	E51A (GAG→GCG) ‡	rffG →	dTDP‑glucose 4,6‑dehydratase 2
RA	3,972,674	G→T	5.6%	E51D (GAG→GAT) ‡	rffG →	dTDP‑glucose 4,6‑dehydratase 2
RA	3,973,857	G→T	5.3%	D84Y (GAC→TAC) ‡	rffH →	dTDP‑glucose pyrophosphorylase 2
RA	3,973,858	A→C	5.3%	D84A (GAC→GCC) ‡	rffH →	dTDP‑glucose pyrophosphorylase 2
RA	3,973,862	T→G	5.3%	G85G (GGT→GGG)	rffH →	dTDP‑glucose pyrophosphorylase 2
RA	3,980,726	G→A	9.3%	intergenic (+30/‑161)	rffM → / → yifK	UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative transporter YifK
RA	3,980,727	T→C	9.5%	intergenic (+31/‑160)	rffM → / → yifK	UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative transporter YifK
RA	3,987,174	C→G	11.4%	D237H (GAT→CAT)	hemY ←	protein HemY
RA	3,987,175	C→G	11.4%	M236I (ATG→ATC)	hemY ←	protein HemY
RA	3,989,188	A→T	6.4%	V214D (GTC→GAC)	hemD ←	uroporphyrinogen‑III synthase
RA	3,989,197	A→G	5.1%	L211P (CTA→CCA)	hemD ←	uroporphyrinogen‑III synthase
RA	3,989,202	A→T	5.1%	C209* (TGT→TGA)	hemD ←	uroporphyrinogen‑III synthase
RA	4,000,230	A→G	7.8%	intergenic (+85/+62)	uvrD → / ← yigE	ssDNA translocase and dsDNA helicase ‑ DNA helicase II/DUF2233 domain‑containing protein YigE
RA	4,000,231	G→C	8.0%	intergenic (+86/+61)	uvrD → / ← yigE	ssDNA translocase and dsDNA helicase ‑ DNA helicase II/DUF2233 domain‑containing protein YigE
RA	4,000,237	T→A	7.9%	intergenic (+92/+55)	uvrD → / ← yigE	ssDNA translocase and dsDNA helicase ‑ DNA helicase II/DUF2233 domain‑containing protein YigE
RA	4,000,238	T→A	7.9%	intergenic (+93/+54)	uvrD → / ← yigE	ssDNA translocase and dsDNA helicase ‑ DNA helicase II/DUF2233 domain‑containing protein YigE
RA	4,000,244	G→C	8.7%	intergenic (+99/+48)	uvrD → / ← yigE	ssDNA translocase and dsDNA helicase ‑ DNA helicase II/DUF2233 domain‑containing protein YigE
RA	4,000,245	C→T	7.9%	intergenic (+100/+47)	uvrD → / ← yigE	ssDNA translocase and dsDNA helicase ‑ DNA helicase II/DUF2233 domain‑containing protein YigE
JC	4,001,645	Δ5 bp	100%	coding (220‑224/951 nt)	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,398	T→C	6.6%	intergenic (+22/+21)	corA → / ← yigF	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF
RA	4,002,400	T→A	6.6%	intergenic (+24/+19)	corA → / ← yigF	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF
RA	4,002,402	G→A	6.6%	intergenic (+26/+17)	corA → / ← yigF	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF
RA	4,002,902	A→T	5.7%	S98T (TCA→ACA)	yigG ←	inner membrane protein
RA	4,002,903	A→T	5.0%	C97* (TGT→TGA)	yigG ←	inner membrane protein
RA	4,008,408	A→G	8.1%	intergenic (+31/+31)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,008,409	A→C	8.0%	intergenic (+32/+30)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,008,415	T→A	9.1%	intergenic (+38/+24)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,008,416	T→A	9.0%	intergenic (+39/+23)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,008,422	G→T	8.9%	intergenic (+45/+17)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,008,423	C→T	9.3%	intergenic (+46/+16)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,014,245	C→T	5.5%	A398V (GCG→GTG)	metE →	cobalamin‑independent homocysteine transmethylase
RA	4,015,333	A→T	7.1%	intergenic (+19/+21)	metE → / ← ysgA	cobalamin‑independent homocysteine transmethylase/putative dienelactone hydrolase
RA	4,017,216:1	+A	9.0%	intergenic (+24/‑117)	udp → / → rmuC	uridine phosphorylase/putative recombination limiting protein RmuC
RA	4,017,222	Δ1 bp	9.2%	intergenic (+30/‑111)	udp → / → rmuC	uridine phosphorylase/putative recombination limiting protein RmuC
RA	4,020,777	T→G	5.4%	G184G (GGT→GGG)	ubiB →	ubiquinone biosynthesis protein UbiB
RA	4,023,525	G→T	7.3%	intergenic (+13/‑29)	tatC → / → tatD	twin arginine protein translocation system ‑ TatC protein/3' ‑> 5' ssDNA/RNA exonuclease TatD
RA	4,023,526	T→G	7.3%	intergenic (+14/‑28)	tatC → / → tatD	twin arginine protein translocation system ‑ TatC protein/3' ‑> 5' ssDNA/RNA exonuclease TatD
RA	4,023,527	C→A	6.8%	intergenic (+15/‑27)	tatC → / → tatD	twin arginine protein translocation system ‑ TatC protein/3' ‑> 5' ssDNA/RNA exonuclease TatD
RA	4,023,528	A→C	7.3%	intergenic (+16/‑26)	tatC → / → tatD	twin arginine protein translocation system ‑ TatC protein/3' ‑> 5' ssDNA/RNA exonuclease TatD
RA	4,028,482	T→G	6.3%	A97A (GCA→GCC) ‡	fadA ←	3‑ketoacyl‑CoA thiolase
RA	4,028,483	G→C	6.4%	A97G (GCA→GGA) ‡	fadA ←	3‑ketoacyl‑CoA thiolase
RA	4,028,484	C→A	5.6%	A97S (GCA→TCA) ‡	fadA ←	3‑ketoacyl‑CoA thiolase
RA	4,041,216	T→C	7.0%	Q73R (CAG→CGG) ‡	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis adaptor protein
RA	4,041,217	G→A	7.0%	Q73* (CAG→TAG) ‡	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis adaptor protein
RA	4,041,220	T→C	7.0%	S72G (AGC→GGC)	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis adaptor protein
RA	4,041,221	G→A	7.0%	A71A (GCC→GCT)	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis adaptor protein
RA	4,049,986	G→T	10.3%	noncoding (88/109 nt)	spf →	small regulatory RNA Spot 42
RA	4,049,989	A→C	9.6%	noncoding (91/109 nt)	spf →	small regulatory RNA Spot 42
RA	4,051,259	G→T	9.9%	noncoding (224/245 nt)	csrC →	small regulatory RNA CsrC
RA	4,051,262	A→C	10.3%	noncoding (227/245 nt)	csrC →	small regulatory RNA CsrC
RA	4,060,261	G→T	7.7%	intergenic (+31/‑186)	bipA → / → yihL	ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL
RA	4,060,264	A→C	7.8%	intergenic (+34/‑183)	bipA → / → yihL	ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL
RA	4,063,571	A→G	7.1%	intergenic (+59/+32)	yihN → / ← ompL	putative transporter YihN/putative outer membrane porin L
RA	4,063,572	A→C	7.1%	intergenic (+60/+31)	yihN → / ← ompL	putative transporter YihN/putative outer membrane porin L
RA	4,063,578	T→A	7.1%	intergenic (+66/+25)	yihN → / ← ompL	putative transporter YihN/putative outer membrane porin L
RA	4,063,579	T→A	7.0%	intergenic (+67/+24)	yihN → / ← ompL	putative transporter YihN/putative outer membrane porin L
RA	4,063,585	G→T	7.2%	intergenic (+73/+18)	yihN → / ← ompL	putative transporter YihN/putative outer membrane porin L
RA	4,063,586	C→T	7.3%	intergenic (+74/+17)	yihN → / ← ompL	putative transporter YihN/putative outer membrane porin L
RA	4,070,457	G→T	9.4%	intergenic (‑56/+58)	yihR ← / ← yihS	putative aldose 1‑epimerase YihR/sulfoquinovose isomerase
RA	4,070,462	T→A	9.0%	intergenic (‑61/+53)	yihR ← / ← yihS	putative aldose 1‑epimerase YihR/sulfoquinovose isomerase
RA	4,070,463	T→A	8.9%	intergenic (‑62/+52)	yihR ← / ← yihS	putative aldose 1‑epimerase YihR/sulfoquinovose isomerase
RA	4,070,464	T→A	8.9%	intergenic (‑63/+51)	yihR ← / ← yihS	putative aldose 1‑epimerase YihR/sulfoquinovose isomerase
RA	4,070,469	A→C	7.4%	intergenic (‑68/+46)	yihR ← / ← yihS	putative aldose 1‑epimerase YihR/sulfoquinovose isomerase
RA	4,074,024	G→A	7.4%	A96T (GCC→ACC)	yihV →	6‑deoxy‑6‑sulfofructose kinase
RA	4,074,029	C→G	7.9%	I97M (ATC→ATG)	yihV →	6‑deoxy‑6‑sulfofructose kinase
RA	4,074,034	T→C	6.2%	V99A (GTG→GCG)	yihV →	6‑deoxy‑6‑sulfofructose kinase
RA	4,080,616	C→A	7.1%	G205C (GGC→TGC)	fdhE ←	formate dehydrogenase formation protein
RA	4,088,091	G→C	6.7%	intergenic (+34/+16)	yiiG → / ← frvR	DUF3829 domain‑containing lipoprotein YiiG/putative transcriptional regulator FrvR
RA	4,095,833	G→T	8.0%	N50K (AAC→AAA)	rhaA ←	L‑rhamnose isomerase
RA	4,095,837	T→G	8.5%	E49A (GAA→GCA) ‡	rhaA ←	L‑rhamnose isomerase
RA	4,095,838	C→A	8.4%	E49* (GAA→TAA) ‡	rhaA ←	L‑rhamnose isomerase
RA	4,095,842	A→C	8.2%	G47G (GGT→GGG)	rhaA ←	L‑rhamnose isomerase
RA	4,095,940	G→A	9.4%	R15C (CGT→TGT)	rhaA ←	L‑rhamnose isomerase
RA	4,095,941	C→G	9.4%	Q14H (CAG→CAC) ‡	rhaA ←	L‑rhamnose isomerase
RA	4,095,942	T→C	9.4%	Q14R (CAG→CGG) ‡	rhaA ←	L‑rhamnose isomerase
RA	4,101,491	T→C	6.1%	intergenic (+61/‑199)	sodA → / → kdgT	superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter
RA	4,101,496	A→G	5.1%	intergenic (+66/‑194)	sodA → / → kdgT	superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter
RA	4,101,497	A→T	5.0%	intergenic (+67/‑193)	sodA → / → kdgT	superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter
RA	4,101,498	C→T	5.3%	intergenic (+68/‑192)	sodA → / → kdgT	superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter
RA	4,101,503	G→A	5.5%	intergenic (+73/‑187)	sodA → / → kdgT	superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter
RA	4,106,369	T→G	7.1%	noncoding (40/58 nt)	cpxQ →	small regulatory RNA CpxQ
RA	4,106,370	G→C	6.8%	noncoding (41/58 nt)	cpxQ →	small regulatory RNA CpxQ
RA	4,106,371	C→A	6.8%	noncoding (42/58 nt)	cpxQ →	small regulatory RNA CpxQ
RA	4,110,717	A→T	7.5%	intergenic (+32/+23)	cdh → / ← tpiA	CDP‑diacylglycerol diphosphatase/triose‑phosphate isomerase
RA	4,110,719	G→C	7.4%	intergenic (+34/+21)	cdh → / ← tpiA	CDP‑diacylglycerol diphosphatase/triose‑phosphate isomerase
RA	4,110,721	A→T	7.0%	intergenic (+36/+19)	cdh → / ← tpiA	CDP‑diacylglycerol diphosphatase/triose‑phosphate isomerase
RA	4,113,473	T→C	12.9%	L61L (TTG→CTG) ‡	uspD →	universal stress protein D
RA	4,113,474	T→A	13.0%	L61* (TTG→TAG) ‡	uspD →	universal stress protein D
RA	4,113,475	G→A	12.9%	L61L (TTG→TTA) ‡	uspD →	universal stress protein D
RA	4,116,274	G→T	8.2%	L317M (CTG→ATG)	glpK ←	glycerol kinase
RA	4,116,278	C→T	7.9%	Q315Q (CAG→CAA) ‡	glpK ←	glycerol kinase
RA	4,116,280	G→C	8.0%	Q315E (CAG→GAG) ‡	glpK ←	glycerol kinase
RA	4,116,282	A→G	8.0%	I314T (ATT→ACT)	glpK ←	glycerol kinase
RA	4,116,286	A→C	8.1%	S313A (TCC→GCC)	glpK ←	glycerol kinase
RA	4,121,622	T→A	9.7%	E42D (GAA→GAT) ‡	hslU ←	ATPase component of the HslVU protease
RA	4,121,623	T→A	9.2%	E42V (GAA→GTA) ‡	hslU ←	ATPase component of the HslVU protease
RA	4,121,626	T→A	9.5%	N41I (AAC→ATC) ‡	hslU ←	ATPase component of the HslVU protease
RA	4,121,627	T→A	9.4%	N41Y (AAC→TAC) ‡	hslU ←	ATPase component of the HslVU protease
RA	4,121,959	T→G	10.0%	N110T (AAC→ACC)	hslV ←	peptidase component of the HslVU protease
RA	4,121,962	C→A	9.9%	G109V (GGT→GTT)	hslV ←	peptidase component of the HslVU protease
RA	4,127,251	C→T	13.1%	intergenic (+26/+35)	rpmE → / ← yiiX	50S ribosomal subunit protein L31/putative lipid binding hydrolase
RA	4,127,252	A→G	12.8%	intergenic (+27/+34)	rpmE → / ← yiiX	50S ribosomal subunit protein L31/putative lipid binding hydrolase
RA	4,130,008	T→C	5.1%	I58I (ATT→ATC)	metL →	fused aspartate kinase/homoserine dehydrogenase 2
RA	4,136,033	G→A	5.6%	intergenic (+18/‑75)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,038	T→C	5.8%	intergenic (+23/‑70)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,039	T→A	5.7%	intergenic (+24/‑69)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,042	T→A	5.7%	intergenic (+27/‑66)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,048	T→C	7.0%	intergenic (+33/‑60)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,137,909	A→C	5.0%	intergenic (‑252/+23)	yijF ← / ← gldA	conserved protein YijF/L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase
RA	4,137,910	C→T	6.2%	intergenic (‑253/+22)	yijF ← / ← gldA	conserved protein YijF/L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase
RA	4,137,911	A→T	5.2%	intergenic (‑254/+21)	yijF ← / ← gldA	conserved protein YijF/L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase
RA	4,137,912	A→G	5.3%	intergenic (‑255/+20)	yijF ← / ← gldA	conserved protein YijF/L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase
RA	4,144,732	G→C	10.4%	Q246H (CAG→CAC)	pflD →	putative formate acetyltransferase 2
RA	4,144,735	G→C	10.3%	A247A (GCG→GCC)	pflD →	putative formate acetyltransferase 2
RA	4,148,049	C→G	5.1%	G90A (GGC→GCC)	yijO ←	putative DNA‑binding transcriptional regulator YijO
RA	4,148,503	G→T	5.1%	intergenic (‑186/+29)	yijO ← / ← eptC	putative DNA‑binding transcriptional regulator YijO/phosphoethanolamine transferase EptC
RA	4,162,150	T→G	5.7%	intergenic (+20/+20)	yijD → / ← trmA	conserved inner membrane protein YijD/tRNA m(5)U54 methyltransferase
RA	4,162,151	G→C	5.8%	intergenic (+21/+19)	yijD → / ← trmA	conserved inner membrane protein YijD/tRNA m(5)U54 methyltransferase
RA	4,162,152	G→C	6.1%	intergenic (+22/+18)	yijD → / ← trmA	conserved inner membrane protein YijD/tRNA m(5)U54 methyltransferase
RA	4,162,153	C→A	5.9%	intergenic (+23/+17)	yijD → / ← trmA	conserved inner membrane protein YijD/tRNA m(5)U54 methyltransferase
RA	4,177,171	T→A	7.3%	intergenic (+43/‑187)	tufB → / → secE	translation elongation factor Tu 2/Sec translocon subunit SecE
RA	4,177,172	T→A	6.9%	intergenic (+44/‑186)	tufB → / → secE	translation elongation factor Tu 2/Sec translocon subunit SecE
RA	4,184,543	C→A	100%	P1100Q (CCG→CAG)	rpoB →	RNA polymerase subunit beta
RA	4,185,907	G→T	5.0%	Q186H (CAG→CAT)	rpoC →	RNA polymerase subunit beta'
RA	4,193,286	G→C	8.8%	D97E (GAC→GAG) ‡	thiF ←	ThiS adenylyltransferase
RA	4,193,287	T→C	8.7%	D97G (GAC→GGC) ‡	thiF ←	ThiS adenylyltransferase
RA	4,193,290	G→A	8.8%	P96L (CCC→CTC) ‡	thiF ←	ThiS adenylyltransferase
RA	4,193,291	G→C	8.8%	P96A (CCC→GCC) ‡	thiF ←	ThiS adenylyltransferase
RA	4,196,164	G→C	5.2%	intergenic (‑65/+168)	thiC ← / ← rsd	phosphomethylpyrimidine synthase/regulator of sigma D
RA	4,201,800	T→A	5.3%	intergenic (‑112/‑126)	zraP ← / → zraS	zinc responsive, periplasmic protein with chaperone activity/sensory histidine kinase ZraS
RA	4,201,801	G→C	5.8%	intergenic (‑113/‑125)	zraP ← / → zraS	zinc responsive, periplasmic protein with chaperone activity/sensory histidine kinase ZraS
RA	4,213,981	G→T	6.1%	P48Q (CCG→CAG)	yjaB ←	putative N‑acetyltransferase YjaB
RA	4,217,943	T→C	5.2%	Y279H (TAT→CAT)	aceA →	isocitrate lyase
RA	4,217,946	G→A	5.2%	A280T (GCG→ACG)	aceA →	isocitrate lyase
RA	4,227,550	G→A	6.8%	intergenic (+39/‑181)	metH → / → yjbB	cobalamin‑dependent methionine synthase/putative inorganic phosphate export protein
RA	4,227,555	A→T	6.5%	intergenic (+44/‑176)	metH → / → yjbB	cobalamin‑dependent methionine synthase/putative inorganic phosphate export protein
RA	4,227,560	T→C	6.5%	intergenic (+49/‑171)	metH → / → yjbB	cobalamin‑dependent methionine synthase/putative inorganic phosphate export protein
RA	4,236,296	T→A	5.7%	L12* (TTA→TAA)	yjbF →	lipoprotein YjbF
RA	4,236,299	T→A	5.7%	L13* (TTA→TAA)	yjbF →	lipoprotein YjbF
RA	4,241,715	G→T	5.4%	C180* (TGC→TGA) ‡	xylE ←	D‑xylose:H(+) symporter
RA	4,241,716	C→G	5.3%	C180S (TGC→TCC) ‡	xylE ←	D‑xylose:H(+) symporter
RA	4,241,717	A→C	5.4%	C180G (TGC→GGC) ‡	xylE ←	D‑xylose:H(+) symporter
RA	4,242,546	G→A	7.5%	intergenic (‑292/+80)	xylE ← / ← malG	D‑xylose:H(+) symporter/maltose ABC transporter membrane subunit MalG
RA	4,242,547	T→C	7.7%	intergenic (‑293/+79)	xylE ← / ← malG	D‑xylose:H(+) symporter/maltose ABC transporter membrane subunit MalG
RA	4,261,349	G→A	8.2%	intergenic (+43/‑320)	yjbM → / → dusA	uncharacterized protein YjbM/tRNA‑dihydrouridine synthase A
RA	4,261,358	T→A	9.6%	intergenic (+52/‑311)	yjbM → / → dusA	uncharacterized protein YjbM/tRNA‑dihydrouridine synthase A
RA	4,261,359	T→A	10.1%	intergenic (+53/‑310)	yjbM → / → dusA	uncharacterized protein YjbM/tRNA‑dihydrouridine synthase A
RA	4,261,368	T→C	6.4%	intergenic (+62/‑301)	yjbM → / → dusA	uncharacterized protein YjbM/tRNA‑dihydrouridine synthase A
RA	4,262,250	G→C	6.7%	G194G (GGG→GGC)	dusA →	tRNA‑dihydrouridine synthase A
RA	4,262,255	G→C	6.6%	S196T (AGC→ACC)	dusA →	tRNA‑dihydrouridine synthase A
RA	4,263,306	C→G	7.9%	R309P (CGT→CCT) ‡	qorA ←	putative quinone oxidoreductase 1
RA	4,263,307	G→C	7.1%	R309G (CGT→GGT) ‡	qorA ←	putative quinone oxidoreductase 1
RA	4,263,308	C→G	6.8%	Q308H (CAG→CAC)	qorA ←	putative quinone oxidoreductase 1
RA	4,264,931	G→T	5.4%	G206G (GGG→GGT)	dnaB →	replicative DNA helicase
RA	4,264,934	A→T	5.2%	V207V (GTA→GTT)	dnaB →	replicative DNA helicase
RA	4,264,935	A→T	5.2%	N208Y (AAC→TAC)	dnaB →	replicative DNA helicase
RA	4,265,670	T→G	8.9%	F453V (TTT→GTT)	dnaB →	replicative DNA helicase
RA	4,265,675	C→A	8.4%	N454K (AAC→AAA)	dnaB →	replicative DNA helicase
RA	4,278,671	T→A	10.2%	C65S (TGT→AGT) ‡	ghxP →	guanine/hypoxanthine transporter GhxP
RA	4,278,673	T→A	10.2%	C65* (TGT→TGA) ‡	ghxP →	guanine/hypoxanthine transporter GhxP
RA	4,278,675	T→A	10.1%	L66Q (CTG→CAG)	ghxP →	guanine/hypoxanthine transporter GhxP
RA	4,279,854	T→C	12.9%	intergenic (+26/‑126)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,855	G→A	13.3%	intergenic (+27/‑125)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,858	A→C	13.4%	intergenic (+30/‑122)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,861	G→T	13.1%	intergenic (+33/‑119)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,864	T→C	13.1%	intergenic (+36/‑116)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,865	G→A	12.9%	intergenic (+37/‑115)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,280,219	A→C	8.8%	E80D (GAA→GAC)	yjcE →	putative transporter YjcE
RA	4,280,224	G→T	7.6%	G82V (GGT→GTT)	yjcE →	putative transporter YjcE
RA	4,281,677	T→A	6.1%	intergenic (+48/+106)	yjcE → / ← yjcF	putative transporter YjcE/pentapeptide repeat‑containing protein YjcF
RA	4,281,678	C→A	6.2%	intergenic (+49/+105)	yjcE → / ← yjcF	putative transporter YjcE/pentapeptide repeat‑containing protein YjcF
RA	4,281,679	T→G	7.0%	intergenic (+50/+104)	yjcE → / ← yjcF	putative transporter YjcE/pentapeptide repeat‑containing protein YjcF
RA	4,281,680	T→A	6.4%	intergenic (+51/+103)	yjcE → / ← yjcF	putative transporter YjcE/pentapeptide repeat‑containing protein YjcF
RA	4,283,232	A→C	5.7%	intergenic (‑157/+21)	yjcF ← / ← actP	pentapeptide repeat‑containing protein YjcF/acetate/glycolate:cation symporter
RA	4,285,320	T→A	5.1%	intergenic (‑107/+93)	yjcH ← / ← acs	conserved inner membrane protein YjcH/acetyl‑CoA synthetase (AMP‑forming)
RA	4,285,327	G→T	5.3%	intergenic (‑114/+86)	yjcH ← / ← acs	conserved inner membrane protein YjcH/acetyl‑CoA synthetase (AMP‑forming)
RA	4,285,328	C→T	5.2%	intergenic (‑115/+85)	yjcH ← / ← acs	conserved inner membrane protein YjcH/acetyl‑CoA synthetase (AMP‑forming)
RA	4,296,060	C→T	37.2%	intergenic (+266/+376)	gltP → / ← yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
RA	4,296,380:1	+CG	100%	intergenic (+586/+56)	gltP → / ← yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
RA	4,309,875	T→G	6.0%	K369T (AAA→ACA) ‡	alsA ←	D‑allose ABC transporter ATP binding subunit
RA	4,309,876	T→A	6.0%	K369* (AAA→TAA) ‡	alsA ←	D‑allose ABC transporter ATP binding subunit
RA	4,309,877	C→A	6.3%	L368L (CTG→CTT)	alsA ←	D‑allose ABC transporter ATP binding subunit
RA	4,312,074	C→T	8.8%	intergenic (‑32/+27)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,312,080	G→C	8.9%	intergenic (‑38/+21)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,312,083	G→C	9.3%	intergenic (‑41/+18)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,312,089	A→G	9.4%	intergenic (‑47/+12)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,314,227	A→T	5.5%	intergenic (+30/+117)	yjdP → / ← phnP	protein YjdP/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase
RA	4,314,233	A→T	5.3%	intergenic (+36/+111)	yjdP → / ← phnP	protein YjdP/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase
RA	4,315,437	A→T	6.2%	F34L (TTT→TTA) ‡	phnO ←	aminoalkylphosphonate N‑acetyltransferase
RA	4,315,438	A→T	6.2%	F34Y (TTT→TAT) ‡	phnO ←	aminoalkylphosphonate N‑acetyltransferase
RA	4,315,439	A→T	6.3%	F34I (TTT→ATT) ‡	phnO ←	aminoalkylphosphonate N‑acetyltransferase
RA	4,317,977	A→G	5.4%	intergenic (‑82/+29)	phnL ← / ← phnK	methylphosphonate degradation complex subunit PhnL/carbon‑phosphorus lyase subunit PhnK
RA	4,317,978	A→C	5.5%	intergenic (‑83/+28)	phnL ← / ← phnK	methylphosphonate degradation complex subunit PhnL/carbon‑phosphorus lyase subunit PhnK
RA	4,317,984	T→A	5.5%	intergenic (‑89/+22)	phnL ← / ← phnK	methylphosphonate degradation complex subunit PhnL/carbon‑phosphorus lyase subunit PhnK
RA	4,317,985	T→A	5.5%	intergenic (‑90/+21)	phnL ← / ← phnK	methylphosphonate degradation complex subunit PhnL/carbon‑phosphorus lyase subunit PhnK
RA	4,317,991	G→T	5.5%	intergenic (‑96/+15)	phnL ← / ← phnK	methylphosphonate degradation complex subunit PhnL/carbon‑phosphorus lyase subunit PhnK
RA	4,317,992	C→T	5.4%	intergenic (‑97/+14)	phnL ← / ← phnK	methylphosphonate degradation complex subunit PhnL/carbon‑phosphorus lyase subunit PhnK
RA	4,327,471	C→T	5.2%	P113S (CCC→TCC)	crfC →	clamp‑binding sister replication fork colocalization protein
RA	4,332,868	G→T	12.0%	R135R (CGC→CGA)	basS ←	sensory histidine kinase BasS
RA	4,332,871	A→C	11.9%	S134R (AGT→AGG)	basS ←	sensory histidine kinase BasS
RA	4,335,654	T→A	6.1%	intergenic (‑64/+40)	eptA ← / ← adiC	phosphoethanolamine transferase EptA/arginine:agmatine antiporter
RA	4,335,655	T→A	6.5%	intergenic (‑65/+39)	eptA ← / ← adiC	phosphoethanolamine transferase EptA/arginine:agmatine antiporter
RA	4,336,974	A→T	8.5%	S20T (TCG→ACG)	adiC ←	arginine:agmatine antiporter
RA	4,336,979	A→C	8.3%	M18R (ATG→AGG)	adiC ←	arginine:agmatine antiporter
RA	4,336,981	C→G	7.6%	L17L (CTG→CTC) ‡	adiC ←	arginine:agmatine antiporter
RA	4,336,983	G→T	8.5%	L17M (CTG→ATG) ‡	adiC ←	arginine:agmatine antiporter
RA	4,336,988	A→T	8.1%	V15D (GTC→GAC)	adiC ←	arginine:agmatine antiporter
RA	4,339,802	A→G	7.8%	A240A (GCT→GCC)	adiA ←	arginine decarboxylase, degradative
RA	4,339,805	C→T	7.9%	Q239Q (CAG→CAA)	adiA ←	arginine decarboxylase, degradative
RA	4,353,170	G→A	8.1%	intergenic (+89/+30)	ghoT → / ← lysU	toxin of the GhoTS toxin‑antitoxin system/lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase
RA	4,353,171	C→G	7.9%	intergenic (+90/+29)	ghoT → / ← lysU	toxin of the GhoTS toxin‑antitoxin system/lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase
RA	4,353,172	C→G	7.9%	intergenic (+91/+28)	ghoT → / ← lysU	toxin of the GhoTS toxin‑antitoxin system/lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase
RA	4,353,173	T→C	7.9%	intergenic (+92/+27)	ghoT → / ← lysU	toxin of the GhoTS toxin‑antitoxin system/lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase
RA	4,356,445	A→T	7.0%	intergenic (‑34/+25)	dtpC ← / ← cadA	dipeptide/tripeptide:H(+) symporter DtpC/lysine decarboxylase 1
RA	4,356,446	A→T	6.3%	intergenic (‑35/+24)	dtpC ← / ← cadA	dipeptide/tripeptide:H(+) symporter DtpC/lysine decarboxylase 1
RA	4,360,310	A→T	6.3%	intergenic (‑279/+86)	cadB ← / ← cadC	lysine:cadaverine antiporter/DNA‑binding transcriptional activator CadC
RA	4,360,312	A→T	6.2%	intergenic (‑281/+84)	cadB ← / ← cadC	lysine:cadaverine antiporter/DNA‑binding transcriptional activator CadC
RA	4,360,314	A→T	6.5%	intergenic (‑283/+82)	cadB ← / ← cadC	lysine:cadaverine antiporter/DNA‑binding transcriptional activator CadC
RA	4,362,528	G→A	8.5%	intergenic (‑594/+23)	cadC ← / ← pheU	DNA‑binding transcriptional activator CadC/tRNA‑Phe
RA	4,362,529	T→C	8.4%	intergenic (‑595/+22)	cadC ← / ← pheU	DNA‑binding transcriptional activator CadC/tRNA‑Phe
RA	4,365,132	T→G	8.0%	A75A (GCA→GCC) ‡	cutA ←	copper binding protein CutA
RA	4,365,133	G→C	7.4%	A75G (GCA→GGA) ‡	cutA ←	copper binding protein CutA
RA	4,365,134	C→A	7.8%	A75S (GCA→TCA) ‡	cutA ←	copper binding protein CutA
RA	4,365,452	G→T	7.2%	intergenic (‑96/+20)	cutA ← / ← dcuA	copper binding protein CutA/C4‑dicarboxylate transporter DcuA
RA	4,365,453	A→C	8.3%	intergenic (‑97/+19)	cutA ← / ← dcuA	copper binding protein CutA/C4‑dicarboxylate transporter DcuA
RA	4,366,854	T→G	8.1%	intergenic (‑81/+37)	dcuA ← / ← aspA	C4‑dicarboxylate transporter DcuA/aspartate ammonia‑lyase
RA	4,366,855	C→A	9.0%	intergenic (‑82/+36)	dcuA ← / ← aspA	C4‑dicarboxylate transporter DcuA/aspartate ammonia‑lyase
RA	4,367,700	G→T	6.2%	L210M (CTG→ATG)	aspA ←	aspartate ammonia‑lyase
RA	4,367,701	G→C	6.9%	I209M (ATC→ATG) ‡	aspA ←	aspartate ammonia‑lyase
RA	4,367,702	A→C	6.1%	I209S (ATC→AGC) ‡	aspA ←	aspartate ammonia‑lyase
RA	4,370,438	T→A	8.5%	intergenic (‑26/‑250)	yjeH ← / → groS	L‑methionine/branched chain amino acid exporter/cochaperonin GroES
RA	4,371,931	G→T	5.9%	E303* (GAA→TAA) ‡	groL →	chaperonin GroEL
RA	4,371,932	A→C	5.9%	E303A (GAA→GCA) ‡	groL →	chaperonin GroEL
RA	4,373,274	A→C	5.3%	intergenic (+112/+91)	yjeI → / ← yjeJ	DUF4156 domain‑containing lipoprotein YjeI/protein YjeJ
RA	4,373,280	T→A	5.5%	intergenic (+118/+85)	yjeI → / ← yjeJ	DUF4156 domain‑containing lipoprotein YjeI/protein YjeJ
RA	4,373,281	T→A	5.5%	intergenic (+119/+84)	yjeI → / ← yjeJ	DUF4156 domain‑containing lipoprotein YjeI/protein YjeJ
RA	4,373,287	G→T	5.8%	intergenic (+125/+78)	yjeI → / ← yjeJ	DUF4156 domain‑containing lipoprotein YjeI/protein YjeJ
RA	4,373,288	C→T	5.8%	intergenic (+126/+77)	yjeI → / ← yjeJ	DUF4156 domain‑containing lipoprotein YjeI/protein YjeJ
RA	4,376,280	G→A	7.6%	intergenic (+15/‑37)	efp → / → ecnA	protein chain elongation factor EF‑P/entericidin A lipoprotein, antidote to entericidin B
RA	4,376,291	T→C	9.4%	intergenic (+26/‑26)	efp → / → ecnA	protein chain elongation factor EF‑P/entericidin A lipoprotein, antidote to entericidin B
RA	4,377,791	A→T	5.9%	intergenic (‑69/+20)	blc ← / ← ampC	outer membrane lipoprotein Blc/beta‑lactamase
RA	4,377,792	A→T	5.9%	intergenic (‑70/+19)	blc ← / ← ampC	outer membrane lipoprotein Blc/beta‑lactamase
RA	4,381,331	G→T	5.9%	P330T (CCG→ACG)	frdA ←	fumarate reductase flavoprotein subunit
RA	4,381,333	A→T	5.9%	L329Q (CTG→CAG)	frdA ←	fumarate reductase flavoprotein subunit
RA	4,381,335	A→C	6.9%	R328R (CGT→CGG)	frdA ←	fumarate reductase flavoprotein subunit
RA	4,381,389	G→T	5.1%	G310G (GGC→GGA)	frdA ←	fumarate reductase flavoprotein subunit
RA	4,381,396	G→C	5.5%	P308R (CCG→CGG)	frdA ←	fumarate reductase flavoprotein subunit
RA	4,381,403	A→C	5.5%	S306A (TCC→GCC)	frdA ←	fumarate reductase flavoprotein subunit
RA	4,390,401	C→A	7.8%	intergenic (‑41/+56)	psd ← / ← rsgA	phosphatidylserine decarboxylase proenzyme/ribosome small subunit‑dependent GTPase A
RA	4,390,403	A→G	8.2%	intergenic (‑43/+54)	psd ← / ← rsgA	phosphatidylserine decarboxylase proenzyme/ribosome small subunit‑dependent GTPase A
RA	4,390,404	C→T	8.2%	intergenic (‑44/+53)	psd ← / ← rsgA	phosphatidylserine decarboxylase proenzyme/ribosome small subunit‑dependent GTPase A
RA	4,390,406	T→G	8.4%	intergenic (‑46/+51)	psd ← / ← rsgA	phosphatidylserine decarboxylase proenzyme/ribosome small subunit‑dependent GTPase A
RA	4,398,678	C→G	5.6%	P423A (CCG→GCG) ‡	mutL →	DNA mismatch repair protein MutL
RA	4,398,679	C→T	5.6%	P423L (CCG→CTG) ‡	mutL →	DNA mismatch repair protein MutL
RA	4,398,685	A→T	5.6%	E425V (GAA→GTA) ‡	mutL →	DNA mismatch repair protein MutL
RA	4,398,686	A→T	5.9%	E425D (GAA→GAT) ‡	mutL →	DNA mismatch repair protein MutL
RA	4,398,692	A→G	5.5%	A427A (GCA→GCG)	mutL →	DNA mismatch repair protein MutL
RA	4,398,693	C→G	5.5%	L428V (CTT→GTT)	mutL →	DNA mismatch repair protein MutL
RA	4,410,034	G→A	6.7%	intergenic (+28/‑99)	rlmB → / → yjfI	23S rRNA 2'‑O‑ribose G2251 methyltransferase/conserved protein YjfI
RA	4,410,037	T→C	6.4%	intergenic (+31/‑96)	rlmB → / → yjfI	23S rRNA 2'‑O‑ribose G2251 methyltransferase/conserved protein YjfI
RA	4,414,234	G→C	6.8%	intergenic (+43/‑41)	yjfC → / → aidB	putative acid‑‑amine ligase YjfC/putative acyl‑CoA dehydrogenase AidB
RA	4,414,240	A→T	7.2%	intergenic (+49/‑35)	yjfC → / → aidB	putative acid‑‑amine ligase YjfC/putative acyl‑CoA dehydrogenase AidB
RA	4,414,241	C→A	6.4%	intergenic (+50/‑34)	yjfC → / → aidB	putative acid‑‑amine ligase YjfC/putative acyl‑CoA dehydrogenase AidB
RA	4,414,242	T→G	7.3%	intergenic (+51/‑33)	yjfC → / → aidB	putative acid‑‑amine ligase YjfC/putative acyl‑CoA dehydrogenase AidB
RA	4,414,243	A→T	7.3%	intergenic (+52/‑32)	yjfC → / → aidB	putative acid‑‑amine ligase YjfC/putative acyl‑CoA dehydrogenase AidB
RA	4,414,249	G→C	7.7%	intergenic (+58/‑26)	yjfC → / → aidB	putative acid‑‑amine ligase YjfC/putative acyl‑CoA dehydrogenase AidB
RA	4,429,120	Δ1 bp	10.0%	coding (186/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,125	A→G	9.7%	E64G (GAA→GGA)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,127	A→T	9.6%	I65F (ATC→TTC) ‡	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,129	C→T	9.7%	I65I (ATC→ATT) ‡	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,133:1	+C	9.5%	coding (199/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,439,845	T→A	8.3%	intergenic (+52/+27)	ytfK → / ← ytfL	DUF1107 domain‑containing protein YtfK/putative inner membrane protein
RA	4,440,356	A→T	5.0%	L287Q (CTG→CAG)	ytfL ←	putative inner membrane protein
RA	4,447,850	G→C	5.4%	V1247L (GTA→CTA)	tamB →	translocation and assembly module subunit TamB
RA	4,454,591	G→A	10.2%	intergenic (+13/+20)	yjfF → / ← fbp	galactofuranose ABC transporter putative membrane subunit YjtF/fructose‑1,6‑bisphosphatase 1
RA	4,454,592	T→C	10.3%	intergenic (+14/+19)	yjfF → / ← fbp	galactofuranose ABC transporter putative membrane subunit YjtF/fructose‑1,6‑bisphosphatase 1
RA	4,454,593	G→A	10.3%	intergenic (+15/+18)	yjfF → / ← fbp	galactofuranose ABC transporter putative membrane subunit YjtF/fructose‑1,6‑bisphosphatase 1
RA	4,454,594	T→C	10.5%	intergenic (+16/+17)	yjfF → / ← fbp	galactofuranose ABC transporter putative membrane subunit YjtF/fructose‑1,6‑bisphosphatase 1
RA	4,457,239	G→A	8.0%	intergenic (+81/+75)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,457,240	C→A	7.8%	intergenic (+82/+74)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,457,246	T→A	7.6%	intergenic (+88/+68)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,457,248	G→C	7.7%	intergenic (+90/+66)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,457,250	T→A	7.6%	intergenic (+92/+64)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,457,256	T→G	8.5%	intergenic (+98/+58)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,457,257	T→C	8.5%	intergenic (+99/+57)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,459,873	G→A	5.8%	intergenic (+562/+27)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,459,878	C→A	5.8%	intergenic (+567/+22)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,459,879	A→G	5.8%	intergenic (+568/+21)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,459,880	C→T	7.8%	intergenic (+569/+20)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,459,881	T→G	5.9%	intergenic (+570/+19)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,459,886	T→C	6.1%	intergenic (+575/+14)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,469,455	A→G	7.8%	T611A (ACC→GCC) ‡	mgtA →	Mg(2(+)) importing P‑type ATPase
RA	4,469,456	C→G	7.5%	T611S (ACC→AGC) ‡	mgtA →	Mg(2(+)) importing P‑type ATPase
RA	4,469,457	C→T	7.8%	T611T (ACC→ACT) ‡	mgtA →	Mg(2(+)) importing P‑type ATPase
RA	4,470,951	A→C	8.5%	intergenic (‑38/+35)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,470,952	T→C	8.5%	intergenic (‑39/+34)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,470,957	G→A	8.6%	intergenic (‑44/+29)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,470,958	G→T	8.5%	intergenic (‑45/+28)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,472,434	G→A	10.0%	R34* (CGA→TGA)	pyrL ←	pyrBI operon leader peptide
RA	4,472,437	T→C	10.2%	N33D (AAT→GAT)	pyrL ←	pyrBI operon leader peptide
RA	4,479,012	A→T	7.1%	intergenic (+123/+22)	rraB → / ← yjgM	ribonuclease E inhibitor protein B/putative acetyltransferase YjgM
RA	4,479,016	G→C	7.5%	intergenic (+127/+18)	rraB → / ← yjgM	ribonuclease E inhibitor protein B/putative acetyltransferase YjgM
RA	4,479,020	A→T	7.9%	intergenic (+131/+14)	rraB → / ← yjgM	ribonuclease E inhibitor protein B/putative acetyltransferase YjgM
RA	4,482,581	A→G	5.2%	D419D (GAT→GAC)	valS ←	valine‑‑tRNA ligase
RA	4,488,424	G→T	5.1%	intergenic (+24/+137)	lptG → / ← yjgR	lipopolysaccharide transport system protein LptG/DUF853 domain‑containing protein YjgR
RA	4,488,426	A→T	5.1%	intergenic (+26/+135)	lptG → / ← yjgR	lipopolysaccharide transport system protein LptG/DUF853 domain‑containing protein YjgR
RA	4,488,427	A→C	5.8%	intergenic (+27/+134)	lptG → / ← yjgR	lipopolysaccharide transport system protein LptG/DUF853 domain‑containing protein YjgR
RA	4,496,312	A→T	6.0%	intergenic (‑103/‑93)	ahr ← / → leuX	aldehyde reductase, NADPH‑dependent/tRNA‑Leu
RA	4,497,287	G→T	10.5%	pseudogene (538/1191 nt)	intB →	KpLE2 phage‑like element; putative integrase
RA	4,497,292	A→C	10.3%	pseudogene (543/1191 nt)	intB →	KpLE2 phage‑like element; putative integrase
RA	4,502,105	A→G	5.1%	*443Q (TAA→CAA)	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,502,106	A→C	5.7%	A442A (GCT→GCG) ‡	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,502,107	G→T	6.4%	A442D (GCT→GAT) ‡	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,502,108	C→T	5.1%	A442T (GCT→ACT) ‡	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,502,962	T→A	5.8%	N157I (AAC→ATC) ‡	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,502,963	T→A	5.8%	N157Y (AAC→TAC) ‡	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,511,689	G→T	5.1%	A242A (GCC→GCA)	fecD ←	ferric citrate ABC transporter membrane subunit FecD
RA	4,514,335	A→T	6.6%	intergenic (‑27/+18)	fecB ← / ← fecA	ferric citrate ABC transporter periplasmic binding protein/ferric citrate outer membrane transporter
RA	4,514,336	A→T	6.4%	intergenic (‑28/+17)	fecB ← / ← fecA	ferric citrate ABC transporter periplasmic binding protein/ferric citrate outer membrane transporter
RA	4,515,328	T→G	6.4%	E450D (GAA→GAC) ‡	fecA ←	ferric citrate outer membrane transporter
RA	4,515,329	T→A	6.4%	E450V (GAA→GTA) ‡	fecA ←	ferric citrate outer membrane transporter
RA	4,515,330	C→A	6.5%	E450* (GAA→TAA) ‡	fecA ←	ferric citrate outer membrane transporter
RA	4,515,968	C→G	9.6%	G237A (GGA→GCA)	fecA ←	ferric citrate outer membrane transporter
RA	4,515,972	A→T	10.3%	Y236N (TAC→AAC)	fecA ←	ferric citrate outer membrane transporter
RA	4,517,556	T→G	7.0%	E54D (GAA→GAC) ‡	fecR ←	regulator for fec operon, periplasmic
RA	4,517,557	T→A	6.9%	E54V (GAA→GTA) ‡	fecR ←	regulator for fec operon, periplasmic
RA	4,517,558	C→A	6.5%	E54* (GAA→TAA) ‡	fecR ←	regulator for fec operon, periplasmic
RA	4,518,736	A→G	6.0%	A70A (GCA→GCG)	insA‑7 →	KpLE2 phage‑like element; IS1 repressor protein InsA
RA	4,519,311	A→G	10.4%	intergenic (+509/+27)	insA‑7 → / ← yjhU	KpLE2 phage‑like element; IS1 repressor protein InsA/KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU
RA	4,519,313	C→A	10.9%	intergenic (+511/+25)	insA‑7 → / ← yjhU	KpLE2 phage‑like element; IS1 repressor protein InsA/KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU
RA	4,519,314	T→G	10.4%	intergenic (+512/+24)	insA‑7 → / ← yjhU	KpLE2 phage‑like element; IS1 repressor protein InsA/KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU
RA	4,519,316	C→T	10.4%	intergenic (+514/+22)	insA‑7 → / ← yjhU	KpLE2 phage‑like element; IS1 repressor protein InsA/KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU
RA	4,520,500	Δ1 bp	10.2%	intergenic (‑176/+171)	yjhU ← / ← yjhF	KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF
RA	4,520,504:1	+T	10.0%	intergenic (‑180/+167)	yjhU ← / ← yjhF	KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF
RA	4,521,370	G→C	6.5%	T217T (ACC→ACG) ‡	yjhF ←	KpLE2 phage‑like element; putative transporter YjhF
RA	4,521,372	T→A	5.6%	T217S (ACC→TCC) ‡	yjhF ←	KpLE2 phage‑like element; putative transporter YjhF
RA	4,521,374	G→C	5.8%	A216G (GCG→GGG)	yjhF ←	KpLE2 phage‑like element; putative transporter YjhF
RA	4,541,545	C→G	6.2%	H197D (CAC→GAC)	fimB →	regulator for fimA
RA	4,543,601	A→C	7.6%	T163P (ACC→CCC)	fimA →	type 1 fimbriae major subunit
RA	4,543,608	C→T	7.3%	A165V (GCC→GTC) ‡	fimA →	type 1 fimbriae major subunit
RA	4,543,609	C→T	7.3%	A165A (GCC→GCT) ‡	fimA →	type 1 fimbriae major subunit
RA	4,543,612	A→G	7.4%	A166A (GCA→GCG)	fimA →	type 1 fimbriae major subunit
RA	4,543,613	A→G	7.5%	T167A (ACC→GCC)	fimA →	type 1 fimbriae major subunit
RA	4,543,620	G→T	7.3%	G169V (GGT→GTT)	fimA →	type 1 fimbriae major subunit
RA	4,549,932	T→A	5.6%	intergenic (+222/+21)	fimH → / ← gntP	type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter
RA	4,551,422	T→A	6.8%	intergenic (‑126/‑214)	gntP ← / → uxuA	fructuronate transporter/D‑mannonate dehydratase
RA	4,557,479	T→C	8.8%	I271V (ATC→GTC)	hypT ←	DNA‑binding transcriptional dual regulator HypT
RA	4,557,480	C→G	9.6%	V270V (GTG→GTC) ‡	hypT ←	DNA‑binding transcriptional dual regulator HypT
RA	4,557,482	C→A	9.0%	V270L (GTG→TTG) ‡	hypT ←	DNA‑binding transcriptional dual regulator HypT
RA	4,557,484	A→T	8.9%	L269Q (CTG→CAG)	hypT ←	DNA‑binding transcriptional dual regulator HypT
RA	4,557,486	T→G	9.1%	E268D (GAA→GAC) ‡	hypT ←	DNA‑binding transcriptional dual regulator HypT
RA	4,557,488	C→G	9.2%	E268Q (GAA→CAA) ‡	hypT ←	DNA‑binding transcriptional dual regulator HypT
RA	4,557,489	G→A	9.2%	D267D (GAC→GAT)	hypT ←	DNA‑binding transcriptional dual regulator HypT
RA	4,566,645	T→A	10.5%	K201I (AAA→ATA) ‡	yjiN ←	DUF445 domain‑containing protein YjiN
RA	4,566,646	T→A	10.5%	K201* (AAA→TAA) ‡	yjiN ←	DUF445 domain‑containing protein YjiN
RA	4,576,842	T→C	5.2%	pseudogene (2708/2721 nt)	yjiV →	putative uncharacterized protein YjiV
RA	4,576,847	G→A	5.1%	pseudogene (2713/2721 nt)	yjiV →	putative uncharacterized protein YjiV
RA	4,579,152	A→C	5.2%	G62G (GGT→GGG)	mcrB ←	5‑methylcytosine‑specific restriction enzyme subunit McrB
RA	4,593,430	G→T	5.5%	V431V (GTC→GTA) ‡	lgoT ←	galactonate:H(+) symporter
RA	4,593,431	A→G	5.8%	V431A (GTC→GCC) ‡	lgoT ←	galactonate:H(+) symporter
RA	4,603,201	A→T	6.5%	intergenic (‑343/‑276)	yjjP ← / → yjjQ	putative succinate exporter YjjP/DNA‑binding transcriptional repressor YjjQ
RA	4,603,203	A→T	6.1%	intergenic (‑345/‑274)	yjjP ← / → yjjQ	putative succinate exporter YjjP/DNA‑binding transcriptional repressor YjjQ
RA	4,606,417	A→T	7.6%	intergenic (‑16/+252)	leuQ ← / ← rsmC	tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase
RA	4,606,634	T→G	6.0%	intergenic (‑233/+35)	leuQ ← / ← rsmC	tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase
RA	4,606,635	C→A	5.6%	intergenic (‑234/+34)	leuQ ← / ← rsmC	tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase
RA	4,606,641	G→T	6.8%	intergenic (‑240/+28)	leuQ ← / ← rsmC	tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase
RA	4,606,642	C→T	6.9%	intergenic (‑241/+27)	leuQ ← / ← rsmC	tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase
RA	4,612,329	A→G	10.0%	intergenic (+40/‑82)	ytjA → / → yjjU	DUF1328 domain‑containing protein YtjA/putative patatin‑like phospholipase YjjU
RA	4,612,330	G→C	10.0%	intergenic (+41/‑81)	ytjA → / → yjjU	DUF1328 domain‑containing protein YtjA/putative patatin‑like phospholipase YjjU
RA	4,612,331	C→T	10.3%	intergenic (+42/‑80)	ytjA → / → yjjU	DUF1328 domain‑containing protein YtjA/putative patatin‑like phospholipase YjjU
RA	4,620,325	C→G	5.4%	T241T (ACC→ACG)	deoB →	phosphopentomutase
RA	4,630,953	C→T	7.3%	T74I (ACC→ATC)	slt →	soluble lytic murein transglycosylase
RA	4,630,956	A→G	6.1%	D75G (GAT→GGT)	slt →	soluble lytic murein transglycosylase
RA	4,631,638	C→T	6.6%	R302R (CGC→CGT)	slt →	soluble lytic murein transglycosylase
RA	4,631,639	G→C	7.3%	D303H (GAT→CAT)	slt →	soluble lytic murein transglycosylase
RA	4,631,642	G→C	6.4%	D304H (GAC→CAC) ‡	slt →	soluble lytic murein transglycosylase
RA	4,631,643	A→G	6.4%	D304G (GAC→GGC) ‡	slt →	soluble lytic murein transglycosylase
RA	4,639,554	A→T	8.9%	intergenic (+24/+36)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA
RA	4,639,555	A→T	9.0%	intergenic (+25/+35)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA
RA	4,639,556	A→T	9.2%	intergenic (+26/+34)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA
RA	4,639,557	A→T	9.0%	intergenic (+27/+33)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA
RA	4,639,901	T→G	7.1%	S136R (AGC→CGC)	arcA ←	DNA‑binding transcriptional dual regulator ArcA
RA	4,639,904	C→G	7.0%	E135Q (GAA→CAA)	arcA ←	DNA‑binding transcriptional dual regulator ArcA
RA	4,639,907	C→A	7.0%	V134F (GTT→TTT)	arcA ←	DNA‑binding transcriptional dual regulator ArcA

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3423741–3424234	3424541–3424238	5–801	44 [43]	[43] 45	[rrfD]–[rrlD]	[rrfD],[rrlD]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	64549 =	74 (0.800)	7 (0.080)	4/258	NT	9.1%	coding (1232/2352 nt)	polB	DNA polymerase II
	?	NC_000913	64587 =	70 (0.810)					coding (1194/2352 nt)	polB	DNA polymerase II
*	?	NC_000913	= 74707	88 (0.950)	6 (0.070)	6/268	NT	6.6%	coding (774/984 nt)	thiB	thiamine ABC transporter periplasmic binding protein
	?	NC_000913	= 74736	84 (0.940)					coding (745/984 nt)	thiB	thiamine ABC transporter periplasmic binding protein
*	?	NC_000913	103901 =	97 (1.050)	6 (0.070)	5/264	NT	6.2%	coding (747/831 nt)	ftsQ	cell division protein FtsQ
	?	NC_000913	103941 =	90 (1.020)					coding (787/831 nt)	ftsQ	cell division protein FtsQ
*	?	NC_000913	157667 =	66 (0.720)	4 (0.050)	4/262	NT	5.7%	coding (66/480 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
	?	NC_000913	157709 =	69 (0.790)					coding (24/480 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
*	?	NC_000913	= 157673	67 (0.730)	5 (0.060)	4/262	NT	7.0%	coding (60/480 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
	?	NC_000913	= 157701	69 (0.790)					coding (32/480 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
*	?	NC_000913	219441 =	74 (0.800)	7 (0.080)	6/260	NT	9.2%	coding (154/708 nt)	trmO	tRNA m(6)t(6)A37 methyltransferase
	?	NC_000913	219467 =	69 (0.790)					coding (128/708 nt)	trmO	tRNA m(6)t(6)A37 methyltransferase
*	?	NC_000913	225078 =	NA (NA)	21 (0.240)	11/262	NT	NA	noncoding (1308/1542 nt)	rrsH	16S ribosomal RNA
	?	NC_000913	225100 =	NA (NA)					noncoding (1330/1542 nt)	rrsH	16S ribosomal RNA
*	?	NC_000913	225154 =	NA (NA)	20 (0.230)	14/266	NT	NA	noncoding (1384/1542 nt)	rrsH	16S ribosomal RNA
	?	NC_000913	225176 =	NA (NA)					noncoding (1406/1542 nt)	rrsH	16S ribosomal RNA
*	?	NC_000913	= 225755	90 (0.980)	7 (0.080)	6/268	NT	7.4%	intergenic (+180/‑4)	alaV/rrlH	tRNA‑Ala/23S ribosomal RNA
	?	NC_000913	3426816 =	NA (NA)					intergenic (‑33/+142)	rrlD/alaU	23S ribosomal RNA/tRNA‑Ala
*	?	NC_000913	= 225998	NA (NA)	18 (0.200)	15/268	NT	NA	noncoding (240/2904 nt)	rrlH	23S ribosomal RNA
	?	NC_000913	= 226015	NA (NA)					noncoding (257/2904 nt)	rrlH	23S ribosomal RNA
*	?	NC_000913	226398 =	NA (NA)	12 (0.140)	9/264	NT	NA	noncoding (640/2904 nt)	rrlH	23S ribosomal RNA
	?	NC_000913	226415 =	NA (NA)					noncoding (657/2904 nt)	rrlH	23S ribosomal RNA
*	?	NC_000913	228016 =	NA (NA)	20 (0.230)	13/262	NT	NA	noncoding (2258/2904 nt)	rrlH	23S ribosomal RNA
	?	NC_000913	228041 =	NA (NA)					noncoding (2283/2904 nt)	rrlH	23S ribosomal RNA
*	?	NC_000913	= 228224	NA (NA)	5 (0.060)	4/264	NT	NA	noncoding (2466/2904 nt)	rrlH	23S ribosomal RNA
	?	NC_000913	= 228241	NA (NA)					noncoding (2483/2904 nt)	rrlH	23S ribosomal RNA
*	?	NC_000913	= 257910	0 (0.000)	4 (0.070) +52 bp	4/172	NT	18.7%	noncoding (766/768 nt)	IS1	repeat region
	?	NC_000913	= 258773	56 (0.610)					pseudogene (98/331 nt)	crl	RNA polymerase holoenzyme assembly factor Crl
*	?	NC_000913	274347 =	NA (NA)	3 (0.030)	3/262	NT	NA	noncoding (803/1195 nt)	IS5	repeat region
	?	NC_000913	274410 =	NA (NA)					noncoding (740/1195 nt)	IS5	repeat region
*	?	NC_000913	274384 =	NA (NA)	8 (0.090)	5/270	NT	NA	noncoding (766/1195 nt)	IS5	repeat region
	?	NC_000913	274422 =	NA (NA)					noncoding (728/1195 nt)	IS5	repeat region
*	?	NC_000913	= 274695	NA (NA)	7 (0.080)	5/268	NT	NA	noncoding (455/1195 nt)	IS5	repeat region
	?	NC_000913	= 274727	NA (NA)					noncoding (423/1195 nt)	IS5	repeat region
*	?	NC_000913	= 285025	85 (0.920)	5 (0.060)	5/270	NT	5.5%	coding (1825/1968 nt)	yagF	CP4‑6 prophage; D‑xylonate dehydratase
	?	NC_000913	= 285066	90 (1.000)					coding (1866/1968 nt)	yagF	CP4‑6 prophage; D‑xylonate dehydratase
*	?	NC_000913	= 288521	76 (0.820)	5 (0.060)	4/262	NT	6.6%	coding (642/759 nt)	xynR	CP4‑6 prophage; DNA‑binding transcriptional repressor XynR
	?	NC_000913	= 288570	70 (0.800)					coding (593/759 nt)	xynR	CP4‑6 prophage; DNA‑binding transcriptional repressor XynR
*	?	NC_000913	= 315520	NA (NA)	25 (0.290)	14/262	NT	NA	noncoding (292/1255 nt)	IS3	repeat region
	?	NC_000913	= 315537	NA (NA)					noncoding (309/1255 nt)	IS3	repeat region
*	?	NC_000913	315560 =	NA (NA)	31 (0.350)	16/266	NT	NA	noncoding (332/1255 nt)	IS3	repeat region
	?	NC_000913	315576 =	NA (NA)					noncoding (348/1255 nt)	IS3	repeat region
*	?	NC_000913	315563 =	NA (NA)	15 (0.180)	11/256	NT	NA	noncoding (335/1255 nt)	IS3	repeat region
	?	NC_000913	315599 =	NA (NA)					noncoding (371/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315572	NA (NA)	73 (0.850)	19/256	NT	NA	noncoding (344/1255 nt)	IS3	repeat region
	?	NC_000913	= 315588	NA (NA)					noncoding (360/1255 nt)	IS3	repeat region
*	?	NC_000913	315642 =	NA (NA)	79 (0.890)	20/266	NT	NA	noncoding (414/1255 nt)	IS3	repeat region
	?	NC_000913	315671 =	NA (NA)					noncoding (443/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315644	NA (NA)	3 (0.030)	3/270	NT	NA	noncoding (416/1255 nt)	IS3	repeat region
	?	NC_000913	= 315657	NA (NA)					noncoding (429/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315646	NA (NA)	89 (1.000)	28/266	NT	NA	noncoding (418/1255 nt)	IS3	repeat region
	?	NC_000913	= 315665	NA (NA)					noncoding (437/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315651	NA (NA)	4 (0.050)	4/260	NT	NA	noncoding (423/1255 nt)	IS3	repeat region
	?	NC_000913	= 315703	NA (NA)					noncoding (475/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315695	NA (NA)	7 (0.080)	6/264	NT	NA	noncoding (467/1255 nt)	IS3	repeat region
	?	NC_000913	= 315719	NA (NA)					noncoding (491/1255 nt)	IS3	repeat region
*	?	NC_000913	315781 =	NA (NA)	3 (0.030)	3/266	NT	NA	noncoding (553/1255 nt)	IS3	repeat region
	?	NC_000913	315875 =	NA (NA)					noncoding (647/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315852	NA (NA)	126 (1.410)	28/268	NT	NA	noncoding (624/1255 nt)	IS3	repeat region
	?	NC_000913	= 315875	NA (NA)					noncoding (647/1255 nt)	IS3	repeat region
*	?	NC_000913	315892 =	NA (NA)	40 (0.440)	17/270	NT	NA	noncoding (664/1255 nt)	IS3	repeat region
	?	NC_000913	315923 =	NA (NA)					noncoding (695/1255 nt)	IS3	repeat region
*	?	NC_000913	315991 =	NA (NA)	62 (0.690)	23/268	NT	NA	noncoding (763/1255 nt)	IS3	repeat region
	?	NC_000913	316014 =	NA (NA)					noncoding (786/1255 nt)	IS3	repeat region
*	?	NC_000913	= 316201	NA (NA)	39 (0.450)	15/258	NT	NA	noncoding (973/1255 nt)	IS3	repeat region
	?	NC_000913	= 316220	NA (NA)					noncoding (992/1255 nt)	IS3	repeat region
*	?	NC_000913	= 316391	NA (NA)	15 (0.170)	12/270	NT	NA	noncoding (1163/1255 nt)	IS3	repeat region
	?	NC_000913	= 316412	NA (NA)					noncoding (1184/1255 nt)	IS3	repeat region
*	?	NC_000913	381663 =	NA (NA)	5 (0.060)	4/262	NT	NA	noncoding (404/1331 nt)	IS2	repeat region
	?	NC_000913	381703 =	NA (NA)					noncoding (444/1331 nt)	IS2	repeat region
*	?	NC_000913	= 381669	NA (NA)	12 (0.140)	8/262	NT	NA	noncoding (410/1331 nt)	IS2	repeat region
	?	NC_000913	= 381695	NA (NA)					noncoding (436/1331 nt)	IS2	repeat region
*	?	NC_000913	= 381689	NA (NA)	3 (0.030)	3/258	NT	NA	noncoding (430/1331 nt)	IS2	repeat region
	?	NC_000913	= 381743	NA (NA)					noncoding (484/1331 nt)	IS2	repeat region
*	?	NC_000913	= 385205	140 (1.520)	24 (0.280)	13/260	NT	15.6%	intergenic (‑589/‑27)	yaiS/tauA	putative deacetylase YaiS/taurine ABC transporter periplasmic binding protein
	?	NC_000913	= 385217	127 (1.460)					intergenic (‑601/‑15)	yaiS/tauA	putative deacetylase YaiS/taurine ABC transporter periplasmic binding protein
*	?	NC_000913	404786 =	92 (1.000)	6 (0.070)	5/258	NT	6.9%	coding (1084/1116 nt)	dgcC	diguanylate cyclase DgcC
	?	NC_000913	404827 =	76 (0.880)					intergenic (+9/+8)	dgcC/proC	diguanylate cyclase DgcC/pyrroline‑5‑carboxylate reductase
*	?	NC_000913	422685 =	67 (0.730)	5 (0.060)	5/264	NT	7.1%	coding (168/1815 nt)	malZ	maltodextrin glucosidase
	?	NC_000913	422718 =	66 (0.750)					coding (201/1815 nt)	malZ	maltodextrin glucosidase
*	?	NC_000913	= 453304	90 (0.980)	5 (0.060)	4/266	NT	5.5%	coding (242/1476 nt)	ampG	muropeptide:H(+) symporter
	?	NC_000913	= 453332	85 (0.960)					coding (214/1476 nt)	ampG	muropeptide:H(+) symporter
*	?	NC_000913	470600 =	58 (0.630)	5 (0.060)	5/264	NT	8.0%	coding (1730/1773 nt)	mdlA	ABC transporter family protein MdlA
	?	NC_000913	470637 =	60 (0.680)					coding (1767/1773 nt) coding (2/1782 nt)	mdlA mdlB	ABC transporter family protein MdlA ABC transporter family protein MdlB
*	?	NC_000913	474269 =	NA (NA)	7 (0.080)	6/264	NT	NA	intergenic (+17/+32)	amtB/tesB	ammonia/ammonium transporter/acyl‑CoA thioesterase II
	?	NC_000913	474296 =	NA (NA)					intergenic (+44/+5)	amtB/tesB	ammonia/ammonium transporter/acyl‑CoA thioesterase II
*	?	NC_000913	487096 =	75 (0.810)	7 (0.080)	7/264	NT	9.3%	coding (561/3363 nt)	mscK	potassium dependent, small conductance mechanosensitive channel
	?	NC_000913	487131 =	65 (0.740)					coding (596/3363 nt)	mscK	potassium dependent, small conductance mechanosensitive channel
*	?	NC_000913	489045 =	72 (0.780)	4 (0.050)	4/264	NT	5.5%	coding (2510/3363 nt)	mscK	potassium dependent, small conductance mechanosensitive channel
	?	NC_000913	489063 =	68 (0.770)					coding (2528/3363 nt)	mscK	potassium dependent, small conductance mechanosensitive channel
*	?	NC_000913	507677 =	82 (0.890)	5 (0.060)	5/266	NT	6.0%	coding (404/795 nt)	ybaP	TraB family protein YbaP
	?	NC_000913	507702 =	78 (0.880)					coding (379/795 nt)	ybaP	TraB family protein YbaP
*	?	NC_000913	555417 =	76 (0.820)	5 (0.060)	4/266	NT	6.6%	coding (807/1386 nt)	cysS	cysteine‑‑tRNA ligase
	?	NC_000913	555448 =	68 (0.770)					coding (838/1386 nt)	cysS	cysteine‑‑tRNA ligase
*	?	NC_000913	566777 =	NA (NA)	3911 (42.720)	272/274	NT	97.5%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	102 (1.110)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein
*	?	NC_000913	= 566841	34 (0.370)	73 (1.050) +34 bp	22/208	NT	58.8%	noncoding (65/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	102 (1.110)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein
*	?	NC_000913	568559 =	3764 (40.810)	332 (3.760)	47/264	NT	8.7%	coding (245/333 nt)	emrE	multidrug/betaine/choline efflux transporter EmrE
	?	NC_000913	568576 =	3365 (38.160)					coding (262/333 nt)	emrE	multidrug/betaine/choline efflux transporter EmrE
*	?	NC_000913	569149 =	4445 (48.190)	362 (4.270)	63/254	NT	7.7%	coding (248/1527 nt)	ybcK	DLP12 prophage; putative recombinase
	?	NC_000913	569173 =	4542 (53.550)					coding (272/1527 nt)	ybcK	DLP12 prophage; putative recombinase
*	?	NC_000913	= 569159	4761 (51.620)	372 (4.390)	68/254	NT	7.7%	coding (258/1527 nt)	ybcK	DLP12 prophage; putative recombinase
	?	NC_000913	= 569161	4542 (53.550)					coding (260/1527 nt)	ybcK	DLP12 prophage; putative recombinase
*	?	NC_000913	570695 =	5227 (56.670)	362 (4.140)	75/262	NT	6.9%	intergenic (+267/‑198)	ybcK/ybcL	DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
	?	NC_000913	570719 =	4871 (55.660)					intergenic (+291/‑174)	ybcK/ybcL	DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
*	?	NC_000913	= 570701	5236 (56.770)	296 (3.380)	38/262	NT	5.7%	intergenic (+273/‑192)	ybcK/ybcL	DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
	?	NC_000913	= 570711	4871 (55.660)					intergenic (+283/‑182)	ybcK/ybcL	DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
*	?	NC_000913	572316 =	3746 (40.620)	185 (2.160)	34/256	NT	5.2%	intergenic (+65/‑52)	ybcM/ylcH	DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH
	?	NC_000913	572345 =	3331 (38.960)					intergenic (+94/‑23)	ybcM/ylcH	DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH
*	?	NC_000913	= 572411	1236 (13.400)	100 (1.140)	32/262	NT	9.6%	coding (44/102 nt)	ylcH	DLP12 prophage; uncharacterized protein YlcH
	?	NC_000913	= 572431	714 (8.160)					coding (64/102 nt)	ylcH	DLP12 prophage; uncharacterized protein YlcH
*	?	NC_000913	= 573438	63 (0.680)	4 (0.050)	3/262	NT	6.0%	coding (68/363 nt)	rusA	DLP12 prophage; crossover junction endodeoxyribonuclease RusA
	?	NC_000913	= 573471	65 (0.740)					coding (101/363 nt)	rusA	DLP12 prophage; crossover junction endodeoxyribonuclease RusA
*	?	NC_000913	= 627928	74 (0.800)	11 (0.120)	9/266	NT	13.5%	coding (235/858 nt)	entB	enterobactin synthase component B
	?	NC_000913	= 627955	70 (0.790)					coding (262/858 nt)	entB	enterobactin synthase component B
*	?	NC_000913	632676 =	81 (0.880)	5 (0.060)	4/260	NT	6.1%	coding (802/1089 nt)	hcxA	hydroxycarboxylate dehydrogenase A
	?	NC_000913	632719 =	79 (0.910)					coding (759/1089 nt)	hcxA	hydroxycarboxylate dehydrogenase A
*	?	NC_000913	= 647732	73 (0.790)	4 (0.040)	4/270	NT	5.2%	coding (304/552 nt)	citX	apo‑citrate lyase phosphoribosyl‑dephospho‑CoA transferase
	?	NC_000913	= 647767	75 (0.830)					coding (269/552 nt)	citX	apo‑citrate lyase phosphoribosyl‑dephospho‑CoA transferase
*	?	NC_000913	690201 =	67 (0.730)	5 (0.060)	4/268	NT	6.9%	coding (681/1539 nt)	lnt	apolipoprotein N‑acyltransferase
	?	NC_000913	690233 =	69 (0.770)					coding (649/1539 nt)	lnt	apolipoprotein N‑acyltransferase
*	?	NC_000913	= 690837	81 (0.880)	6 (0.070)	6/258	NT	7.3%	coding (45/1539 nt)	lnt	apolipoprotein N‑acyltransferase
	?	NC_000913	= 690850	77 (0.890)					coding (32/1539 nt)	lnt	apolipoprotein N‑acyltransferase
*	?	NC_000913	692004 =	74 (0.800)	4 (0.050)	4/266	NT	5.3%	coding (338/468 nt)	ybeY	endoribonuclease YbeY
	?	NC_000913	692037 =	71 (0.800)					coding (305/468 nt)	ybeY	endoribonuclease YbeY
*	?	NC_000913	713121 =	85 (0.920)	6 (0.070)	6/266	NT	7.1%	coding (135/546 nt)	seqA	SeqA, negative modulator of initiation of replication
	?	NC_000913	713158 =	75 (0.840)					coding (172/546 nt)	seqA	SeqA, negative modulator of initiation of replication
*	?	NC_000913	= 724261	78 (0.850)	5 (0.060)	4/266	NT	6.0%	coding (154/2685 nt)	kdpD	sensory histidine kinase KdpD
	?	NC_000913	= 724278	82 (0.920)					coding (137/2685 nt)	kdpD	sensory histidine kinase KdpD
*	?	NC_000913	732888 =	62 (0.670)	6 (0.070)	6/268	NT	8.0%	coding (3306/4194 nt)	rhsC	rhs element protein RhsC
	?	NC_000913	734728 =	77 (0.860)					pseudogene (509/1434 nt)	ybfO	conserved protein, rhs‑like YbfO
*	?	NC_000913	= 743664	103 (1.120)	6 (0.070)	5/262	NT	5.7%	coding (72/657 nt)	pxpB	5‑oxoprolinase component B
	?	NC_000913	= 743694	100 (1.140)					coding (102/657 nt)	pxpB	5‑oxoprolinase component B
*	?	NC_000913	746834 =	69 (0.750)	4 (0.040)	4/270	NT	5.9%	coding (936/1047 nt)	abrB	putative regulator
	?	NC_000913	746875 =	59 (0.650)					coding (895/1047 nt)	abrB	putative regulator
*	?	NC_000913	= 762898	NA (NA)	4 (0.050)	4/262	NT	NA	noncoding (6/37 nt)	other	REP68d
	?	NC_000913	= 762917	NA (NA)					noncoding (25/37 nt)	other	REP68d
*	?	NC_000913	797520 =	82 (0.890)	5 (0.060)	4/262	NT	5.8%	coding (967/1059 nt)	modC	molybdate ABC transporter ATP binding subunit
	?	NC_000913	797584 =	85 (0.970)					coding (1031/1059 nt)	modC	molybdate ABC transporter ATP binding subunit
*	?	NC_000913	= 824208	51 (0.550)	6 (0.070)	4/266	NT	9.7%	coding (290/762 nt)	ybhP	endonuclease/exonuclease/phosphatase domain‑containing protein YbhP
	?	NC_000913	= 824246	63 (0.710)					coding (252/762 nt)	ybhP	endonuclease/exonuclease/phosphatase domain‑containing protein YbhP
*	?	NC_000913	= 884917	97 (1.050)	10 (0.120)	8/258	NT	9.6%	intergenic (+12/+29)	mdfA/ybjH	multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter/uncharacterized protein YbjH
	?	NC_000913	= 884930	98 (1.140)					intergenic (+25/+16)	mdfA/ybjH	multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter/uncharacterized protein YbjH
*	?	NC_000913	944904 =	91 (0.990)	10 (0.120)	9/260	NT	10.7%	intergenic (+8/+27)	dmsC/ycaC	dimethyl sulfoxide reductase subunit C/putative hydrolase
	?	NC_000913	944926 =	82 (0.940)					intergenic (+30/+5)	dmsC/ycaC	dimethyl sulfoxide reductase subunit C/putative hydrolase
*	?	NC_000913	= 972504	82 (0.890)	5 (0.060)	5/264	NT	6.0%	coding (753/894 nt)	ycbJ	putative phosphotransferase YcbJ
	?	NC_000913	= 972533	78 (0.880)					coding (782/894 nt)	ycbJ	putative phosphotransferase YcbJ
*	?	NC_000913	= 1028822	63 (0.680)	5 (0.060)	5/266	NT	7.2%	coding (1148/1191 nt)	rlmI	23S rRNA m(5)C1962 methyltransferase
	?	NC_000913	= 1028857	68 (0.770)					coding (1113/1191 nt)	rlmI	23S rRNA m(5)C1962 methyltransferase
*	?	NC_000913	= 1035452	61 (0.660)	5 (0.060)	5/262	NT	7.4%	coding (387/708 nt)	hyaC	hydrogenase 1 cytochrome b subunit
	?	NC_000913	= 1035457	68 (0.780)					coding (392/708 nt)	hyaC	hydrogenase 1 cytochrome b subunit
*	?	NC_000913	= 1040875	74 (0.800)	5 (0.060)	3/262	NT	6.6%	coding (259/1299 nt)	appA	periplasmic phosphoanhydride phosphatase/multiple inositol‑polyphosphate phosphatase
	?	NC_000913	= 1040894	72 (0.820)					coding (278/1299 nt)	appA	periplasmic phosphoanhydride phosphatase/multiple inositol‑polyphosphate phosphatase
*	?	NC_000913	= 1074671	87 (0.940)	6 (0.070)	5/258	NT	6.4%	coding (430/639 nt)	rutR	DNA‑binding transcriptional dual regulator RutR
	?	NC_000913	= 1074703	93 (1.080)					coding (462/639 nt)	rutR	DNA‑binding transcriptional dual regulator RutR
*	?	NC_000913	1100121 =	84 (0.910)	6 (0.070)	5/268	NT	7.2%	coding (482/555 nt)	ycdY	chaperone protein YcdY
	?	NC_000913	1100158 =	72 (0.800)					coding (519/555 nt)	ycdY	chaperone protein YcdY
*	?	NC_000913	1121419 =	65 (0.700)	8 (0.090)	7/264	NT	11.7%	coding (69/246 nt)	dinI	DNA damage‑inducible protein I
	?	NC_000913	1121450 =	59 (0.670)					coding (38/246 nt)	dinI	DNA damage‑inducible protein I
*	?	NC_000913	1123367 =	87 (0.940)	6 (0.070)	6/264	NT	6.7%	intergenic (‑94/+40)	yceB/grxB	putative lipid‑binding lipoprotein YceB/reduced glutaredoxin 2
	?	NC_000913	1123395 =	83 (0.940)					intergenic (‑122/+12)	yceB/grxB	putative lipid‑binding lipoprotein YceB/reduced glutaredoxin 2
*	?	NC_000913	= 1126460	77 (0.830)	6 (0.070)	6/264	NT	7.9%	coding (304/648 nt)	yceH	DUF480 domain‑containing protein YceH
	?	NC_000913	= 1126492	67 (0.760)					coding (336/648 nt)	yceH	DUF480 domain‑containing protein YceH
*	?	NC_000913	= 1180353	NA (NA)	3 (0.030)	3/262	NT	NA	coding (834/840 nt)	cobB	protein‑lysine deacetylase/desuccinylase
	?	NC_000913	= 1180378	NA (NA)					noncoding (24/29 nt)	other	REPv104a
*	?	NC_000913	1203942 =	70 (0.760)	5 (0.060)	5/258	NT	7.3%	coding (121/339 nt)	ymfM	e14 prophage; protein YmfM
	?	NC_000913	1203972 =	62 (0.720)					coding (151/339 nt)	ymfM	e14 prophage; protein YmfM
*	?	NC_000913	1207790 =	7 (0.080)	47 (0.580)	41/244	NT	85.3%	coding (290/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	1209619 =	10 (0.120)					pseudogene (37/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment
*	?	NC_000913	= 1207805	7 (0.080)	74 (0.910)	59/244	NT	90.1%	coding (305/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	= 1209602	10 (0.120)					pseudogene (54/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment
*	?	NC_000913	1231441 =	82 (0.890)	5 (0.060)	5/262	NT	6.3%	coding (256/1269 nt)	umuC	DNA polymerase V catalytic protein
	?	NC_000913	1231473 =	72 (0.820)					coding (288/1269 nt)	umuC	DNA polymerase V catalytic protein
*	?	NC_000913	1259087 =	73 (0.790)	8 (0.090)	6/254	NT	10.9%	intergenic (+18/+37)	ychH/dauA	stress‑induced protein/aerobic C4‑dicarboxylate transporter DauA
	?	NC_000913	1259115 =	63 (0.740)					intergenic (+46/+9)	ychH/dauA	stress‑induced protein/aerobic C4‑dicarboxylate transporter DauA
*	?	NC_000913	= 1259189	80 (0.870)	5 (0.060)	5/268	NT	6.3%	coding (1615/1680 nt)	dauA	aerobic C4‑dicarboxylate transporter DauA
	?	NC_000913	= 1259221	71 (0.790)					coding (1583/1680 nt)	dauA	aerobic C4‑dicarboxylate transporter DauA
*	?	NC_000913	= 1270199	41 (0.440)	7 (0.080)	6/264	NT	16.8%	intergenic (+276/+39)	rdlB/ldrC	small regulatory antisense RNA RdlB/small toxic polypeptide LdrC
	?	NC_000913	= 1270223	30 (0.340)					intergenic (+300/+15)	rdlB/ldrC	small regulatory antisense RNA RdlB/small toxic polypeptide LdrC
*	?	NC_000913	1286997 =	38 (0.410)	4 (0.050)	4/256	NT	12.3%	intergenic (+13/+69)	ychS/rttR	putative uncharacterized protein YchS/small RNA RttR
	?	NC_000913	1287084 =	22 (0.260)					noncoding (153/171 nt)	rttR	small RNA RttR
*	?	NC_000913	= 1299498	0 (0.000)	140 (1.560)	98/268	NT	100%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein
*	?	NC_000913	= 1350219	80 (0.870)	13 (0.150)	7/262	NT	14.0%	intergenic (‑112/+32)	yciW/fabI	putative oxidoreductase/enoyl‑[acyl‑carrier‑protein] reductase
	?	NC_000913	= 1350224	84 (0.960)					intergenic (‑117/+27)	yciW/fabI	putative oxidoreductase/enoyl‑[acyl‑carrier‑protein] reductase
*	?	NC_000913	= 1355762	65 (0.700)	6 (0.070)	5/260	NT	8.3%	coding (1349/1644 nt)	sapA	putative periplasmic binding protein SapA
	?	NC_000913	= 1355783	71 (0.820)					coding (1328/1644 nt)	sapA	putative periplasmic binding protein SapA
*	?	NC_000913	1360805 =	102 (1.110)	5 (0.060)	4/258	NT	5.2%	coding (104/1419 nt)	puuA	glutamate‑putrescine ligase
	?	NC_000913	1360853 =	87 (1.010)					coding (56/1419 nt)	puuA	glutamate‑putrescine ligase
*	?	NC_000913	1396537 =	NA (NA)	7 (0.080)	5/264	NT	7.4%	noncoding (494/1195 nt)	IS5	repeat region
	?	NC_000913	= 1428270	92 (1.000)					noncoding (525/1196 nt)	IS5	repeat region
*	?	NC_000913	= 1425331	74 (0.800)	6 (0.070)	5/264	NT	7.5%	intergenic (+92/‑46)	trkG/ynaK	Rac prophage; K(+) transporter TrkG/Rac prophage; ParB‑like nuclease domain‑containing protein YnaK
	?	NC_000913	= 1425343	77 (0.870)					intergenic (+104/‑34)	trkG/ynaK	Rac prophage; K(+) transporter TrkG/Rac prophage; ParB‑like nuclease domain‑containing protein YnaK
*	?	NC_000913	1440437 =	68 (0.740)	5 (0.060)	4/262	NT	7.3%	coding (348/3525 nt)	ydbK	putative pyruvate‑flavodoxin oxidoreductase
	?	NC_000913	1440472 =	63 (0.720)					coding (313/3525 nt)	ydbK	putative pyruvate‑flavodoxin oxidoreductase
*	?	NC_000913	= 1440443	65 (0.700)	5 (0.060)	5/262	NT	7.4%	coding (342/3525 nt)	ydbK	putative pyruvate‑flavodoxin oxidoreductase
	?	NC_000913	= 1440464	63 (0.720)					coding (321/3525 nt)	ydbK	putative pyruvate‑flavodoxin oxidoreductase
*	?	NC_000913	1443046 =	82 (0.890)	6 (0.070)	6/264	NT	7.2%	intergenic (‑203/‑5)	ldhA/ydbH	D‑lactate dehydrogenase/PF11739 family protein YdbH
	?	NC_000913	1443061 =	77 (0.870)					coding (11/2640 nt)	ydbH	PF11739 family protein YdbH
*	?	NC_000913	1456658 =	78 (0.850)	4 (0.050)	4/264	NT	5.3%	coding (229/1071 nt)	paaE	phenylacetyl‑CoA 1,2‑epoxidase, reductase subunit
	?	NC_000913	1456698 =	68 (0.770)					coding (269/1071 nt)	paaE	phenylacetyl‑CoA 1,2‑epoxidase, reductase subunit
*	?	NC_000913	= 1458115	79 (0.860)	5 (0.060)	3/262	NT	6.4%	coding (619/768 nt)	paaF	putative 2,3‑dehydroadipyl‑CoA hydratase
	?	NC_000913	= 1458141	72 (0.820)					coding (645/768 nt)	paaF	putative 2,3‑dehydroadipyl‑CoA hydratase
*	?	NC_000913	= 1463445	89 (0.960)	8 (0.090)	5/262	NT	8.6%	intergenic (+7/‑94)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX
	?	NC_000913	= 1463482	85 (0.970)					intergenic (+44/‑57)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX
*	?	NC_000913	1465092 =	116 (1.260)	15 (0.180)	10/254	NT	12.1%	intergenic (+31/+73)	paaY/ynbG	2‑hydroxycyclohepta‑1,4,6‑triene‑1‑carboxyl‑CoA thioesterase/uncharacterized protein YnbG
	?	NC_000913	1465125 =	111 (1.310)					intergenic (+64/+40)	paaY/ynbG	2‑hydroxycyclohepta‑1,4,6‑triene‑1‑carboxyl‑CoA thioesterase/uncharacterized protein YnbG
*	?	NC_000913	1537718 =	88 (0.950)	6 (0.070)	6/264	NT	6.9%	coding (1136/1545 nt)	narY	nitrate reductase Z subunit beta
	?	NC_000913	1537756 =	78 (0.880)					coding (1098/1545 nt)	narY	nitrate reductase Z subunit beta
*	?	NC_000913	1562837 =	72 (0.780)	8 (0.090)	7/260	NT	11.2%	coding (240/582 nt)	ddpX	D‑alanyl‑D‑alanine dipeptidase
	?	NC_000913	1562864 =	59 (0.680)					coding (213/582 nt)	ddpX	D‑alanyl‑D‑alanine dipeptidase
*	?	NC_000913	= 1619402	65 (0.700)	4 (0.040)	4/268	NT	5.6%	coding (283/435 nt)	marR	DNA‑binding transcriptional repressor MarR
	?	NC_000913	= 1619430	71 (0.790)					coding (311/435 nt)	marR	DNA‑binding transcriptional repressor MarR
*	?	NC_000913	= 1770386	73 (0.790)	7 (0.080)	7/254	NT	9.1%	noncoding (15/105 nt)	rprA	small regulatory RNA RprA
	?	NC_000913	= 1770390	73 (0.860)					noncoding (19/105 nt)	rprA	small regulatory RNA RprA
*	?	NC_000913	1786712 =	79 (0.860)	8 (0.090)	8/268	NT	9.5%	coding (401/2379 nt)	ppsA	phosphoenolpyruvate synthetase
	?	NC_000913	1786747 =	76 (0.850)					coding (366/2379 nt)	ppsA	phosphoenolpyruvate synthetase
*	?	NC_000913	1828864 =	78 (0.850)	6 (0.070)	6/258	NT	7.8%	coding (871/1479 nt)	astD	aldehyde dehydrogenase
	?	NC_000913	1828903 =	68 (0.790)					coding (832/1479 nt)	astD	aldehyde dehydrogenase
*	?	NC_000913	1840631 =	88 (0.950)	5 (0.060)	4/262	NT	5.6%	coding (1165/1308 nt)	ynjE	molybdopterin synthase sulfurtransferase
	?	NC_000913	1840668 =	84 (0.960)					coding (1202/1308 nt)	ynjE	molybdopterin synthase sulfurtransferase
*	?	NC_000913	= 1881675	75 (0.810)	9 (0.100)	7/266	NT	11.4%	coding (135/924 nt)	dmlR	DNA‑binding transcriptional regulator DmlR
	?	NC_000913	= 1881705	67 (0.750)					coding (105/924 nt)	dmlR	DNA‑binding transcriptional regulator DmlR
*	?	NC_000913	1909042 =	89 (0.960)	6 (0.070)	4/264	NT	6.7%	coding (118/240 nt)	yobH	protein YobH
	?	NC_000913	1909080 =	81 (0.920)					coding (156/240 nt)	yobH	protein YobH
*	?	NC_000913	= 1923303	99 (1.070)	7 (0.080)	6/256	NT	7.2%	noncoding (238/249 nt)	ryeA	small RNA RyeA
	?	NC_000913	= 1923323	89 (1.040)					intergenic (+9/+42)	ryeA/yebY	small RNA RyeA/DUF2511 domain‑containing protein YebY
*	?	NC_000913	1929977 =	NA (NA)	3 (0.030)	3/264	NT	NA	noncoding (31/34 nt)	other	REP135b
	?	NC_000913	1930007 =	NA (NA)					noncoding (1/34 nt)	other	REP135b
*	?	NC_000913	1947279 =	69 (0.750)	6 (0.070)	4/262	NT	8.9%	coding (98/522 nt)	ruvC	crossover junction endodeoxyribonuclease RuvC
	?	NC_000913	1947324 =	58 (0.660)					coding (53/522 nt)	ruvC	crossover junction endodeoxyribonuclease RuvC
*	?	NC_000913	1963110 =	71 (0.770)	4 (0.050)	4/260	NT	5.9%	coding (1941/2079 nt)	flhA	flagellar biosynthesis protein FlhA
	?	NC_000913	1963169 =	61 (0.700)					coding (1882/2079 nt)	flhA	flagellar biosynthesis protein FlhA
*	?	NC_000913	2035286 =	104 (1.130)	8 (0.100)	7/252	NT	8.1%	intergenic (+43/‑549)	yedS/hchA	putative outer membrane protein YedS, N‑terminal fragment/protein/nucleic acid deglycase 1
	?	NC_000913	2035318 =	87 (1.030)					intergenic (+75/‑517)	yedS/hchA	putative outer membrane protein YedS, N‑terminal fragment/protein/nucleic acid deglycase 1
*	?	NC_000913	2042116 =	94 (1.020)	12 (0.140)	9/256	NT	13.4%	intergenic (+91/‑252)	zinT/yodB	metal‑binding protein ZinT/putative cytochrome
	?	NC_000913	2042149 =	68 (0.800)					intergenic (+124/‑219)	zinT/yodB	metal‑binding protein ZinT/putative cytochrome
*	?	NC_000913	2062567 =	71 (0.770)	4 (0.050)	4/262	NT	5.8%	coding (757/933 nt)	ldtA	L,D‑transpeptidase ErfK
	?	NC_000913	2062600 =	63 (0.720)					coding (724/933 nt)	ldtA	L,D‑transpeptidase ErfK
*	?	NC_000913	= 2099817	100 (1.080)	7 (0.080)	7/264	NT	6.8%	intergenic (‑204/+45)	ugd/gnd	UDP‑glucose 6‑dehydrogenase/6‑phosphogluconate dehydrogenase, decarboxylating
	?	NC_000913	= 2099828	95 (1.080)					intergenic (‑215/+34)	ugd/gnd	UDP‑glucose 6‑dehydrogenase/6‑phosphogluconate dehydrogenase, decarboxylating
*	?	NC_000913	2120504 =	81 (0.880)	4 (0.050)	4/262	NT	5.1%	coding (1051/1395 nt)	wcaJ	undecaprenyl‑phosphate glucose phosphotransferase
	?	NC_000913	2120543 =	72 (0.820)					coding (1012/1395 nt)	wcaJ	undecaprenyl‑phosphate glucose phosphotransferase
*	?	NC_000913	2135939 =	95 (1.030)	5 (0.060)	4/266	NT	5.4%	coding (160/444 nt)	wzb	protein‑tyrosine phosphatase
	?	NC_000913	2135989 =	84 (0.950)					coding (110/444 nt)	wzb	protein‑tyrosine phosphatase
*	?	NC_000913	= 2138757	79 (0.860)	10 (0.110)	6/264	NT	11.4%	coding (856/1584 nt)	yegH	inner membrane protein YegH
	?	NC_000913	= 2138764	80 (0.910)					coding (863/1584 nt)	yegH	inner membrane protein YegH
*	?	NC_000913	= 2156463	76 (0.820)	5 (0.060)	5/260	NT	6.6%	coding (1201/3123 nt)	mdtB	multidrug efflux pump RND permease subunit MdtB
	?	NC_000913	= 2156493	70 (0.810)					coding (1231/3123 nt)	mdtB	multidrug efflux pump RND permease subunit MdtB
*	?	NC_000913	= 2179809	82 (0.890)	9 (0.100)	7/264	NT	10.1%	coding (989/1278 nt)	yegT	putative transporter YegT
	?	NC_000913	= 2179833	82 (0.930)					coding (1013/1278 nt)	yegT	putative transporter YegT
*	?	NC_000913	2182649 =	69 (0.750)	4 (0.040)	4/268	NT	5.5%	coding (133/747 nt)	yegW	putative DNA‑binding transcriptional regulator YegW
	?	NC_000913	2182681 =	71 (0.790)					coding (101/747 nt)	yegW	putative DNA‑binding transcriptional regulator YegW
*	?	NC_000913	= 2198615	90 (0.980)	5 (0.060)	5/264	NT	5.5%	intergenic (+1317/‑1664)	yehF/yehI	putative protein YehF/DUF4132 domain‑containing protein YehI
	?	NC_000913	= 2198639	87 (0.990)					intergenic (+1341/‑1640)	yehF/yehI	putative protein YehF/DUF4132 domain‑containing protein YehI
*	?	NC_000913	= 2199933	62 (0.670)	5 (0.060)	4/268	NT	7.2%	intergenic (+2635/‑346)	yehF/yehI	putative protein YehF/DUF4132 domain‑containing protein YehI
	?	NC_000913	= 2199960	68 (0.760)					intergenic (+2662/‑319)	yehF/yehI	putative protein YehF/DUF4132 domain‑containing protein YehI
*	?	NC_000913	= 2232163	71 (0.770)	4 (0.050)	4/264	NT	5.0%	coding (320/885 nt)	cdd	cytidine/deoxycytidine deaminase
	?	NC_000913	= 2232194	83 (0.940)					coding (351/885 nt)	cdd	cytidine/deoxycytidine deaminase
*	?	NC_000913	= 2252869	NA (NA)	7 (0.080)	6/262	NT	NA	noncoding (19/28 nt)	other	REPv157b
	?	NC_000913	= 2252879	NA (NA)					noncoding (9/28 nt)	other	REPv157b
*	?	NC_000913	= 2278528	77 (0.830)	6 (0.070)	5/268	NT	7.8%	intergenic (‑291/+42)	yejG/bcr	protein YejG/multidrug efflux pump Bcr
	?	NC_000913	= 2278560	68 (0.760)					intergenic (‑323/+10)	yejG/bcr	protein YejG/multidrug efflux pump Bcr
*	?	NC_000913	2347296 =	NA (NA)	3 (0.030)	3/262	NT	NA	noncoding (33/36 nt)	other	REP164d
	?	NC_000913	2347328 =	NA (NA)					noncoding (1/36 nt)	other	REP164d
*	?	NC_000913	2375355 =	101 (1.100)	6 (0.070)	4/266	NT	5.7%	coding (608/963 nt)	menC	o‑succinylbenzoate synthase
	?	NC_000913	2375386 =	100 (1.130)					coding (577/963 nt)	menC	o‑succinylbenzoate synthase
*	?	NC_000913	2422740 =	90 (0.980)	6 (0.070)	6/266	NT	6.5%	coding (800/891 nt)	rpnB	recombination‑promoting nuclease RpnB
	?	NC_000913	2422778 =	85 (0.960)					coding (762/891 nt)	rpnB	recombination‑promoting nuclease RpnB
*	?	NC_000913	2435278 =	77 (0.830)	4 (0.050)	4/266	NT	5.2%	coding (359/813 nt)	truA	tRNA pseudouridine(38‑40) synthase
	?	NC_000913	2435305 =	73 (0.820)					coding (332/813 nt)	truA	tRNA pseudouridine(38‑40) synthase
*	?	NC_000913	2442508 =	74 (0.800)	8 (0.090)	7/266	NT	10.8%	coding (745/2007 nt)	mnmC	fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme
	?	NC_000913	2442566 =	61 (0.690)					coding (803/2007 nt)	mnmC	fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme
*	?	NC_000913	= 2480552	63 (0.680)	5 (0.060)	5/256	NT	7.3%	intergenic (+22/+86)	dsdA/emrY	D‑serine ammonia‑lyase/tripartite efflux pump membrane subunit EmrY
	?	NC_000913	= 2480570	69 (0.810)					intergenic (+40/+68)	dsdA/emrY	D‑serine ammonia‑lyase/tripartite efflux pump membrane subunit EmrY
*	?	NC_000913	2505807 =	65 (0.700)	6 (0.070)	6/262	NT	8.4%	coding (826/1086 nt)	ypdF	aminopeptidase
	?	NC_000913	2505850 =	69 (0.790)					coding (783/1086 nt)	ypdF	aminopeptidase
*	?	NC_000913	= 2525619	85 (0.920)	9 (0.100)	9/262	NT	9.8%	coding (493/765 nt)	yfeN	conserved outer membrane protein YfeN
	?	NC_000913	= 2525626	85 (0.970)					coding (500/765 nt)	yfeN	conserved outer membrane protein YfeN
*	?	NC_000913	= 2553451	77 (0.830)	5 (0.060)	5/270	NT	5.9%	coding (227/900 nt)	hemF	coproporphyrinogen III oxidase
	?	NC_000913	= 2553492	84 (0.930)					coding (268/900 nt)	hemF	coproporphyrinogen III oxidase
*	?	NC_000913	2571925 =	91 (0.990)	13 (0.150)	10/266	NT	12.8%	coding (126/288 nt)	eutN	putative carboxysome structural protein
	?	NC_000913	2571943 =	90 (1.010)					coding (108/288 nt)	eutN	putative carboxysome structural protein
*	?	NC_000913	2581648 =	NA (NA)	7 (0.080)	6/262	NT	NA	intergenic (+9/+86)	tktB/ypfG	transketolase 2/DUF1176 domain‑containing protein YpfG
	?	NC_000913	2581713 =	NA (NA)					noncoding (15/19 nt)	other	REP179c
*	?	NC_000913	2594968 =	95 (1.030)	6 (0.070)	4/264	NT	6.4%	coding (892/2016 nt)	tmcA	tRNA(Met) cytidine acetyltransferase
	?	NC_000913	2595009 =	85 (0.960)					coding (851/2016 nt)	tmcA	tRNA(Met) cytidine acetyltransferase
*	?	NC_000913	2680032 =	90 (0.980)	9 (0.100)	8/264	NT	10.0%	coding (2714/3282 nt)	yphG	DUF5107 domain‑containing protein YphG
	?	NC_000913	2680053 =	76 (0.860)					coding (2693/3282 nt)	yphG	DUF5107 domain‑containing protein YphG
*	?	NC_000913	2682473 =	60 (0.650)	8 (0.090)	6/262	NT	13.5%	coding (273/3282 nt)	yphG	DUF5107 domain‑containing protein YphG
	?	NC_000913	2682505 =	46 (0.530)					coding (241/3282 nt)	yphG	DUF5107 domain‑containing protein YphG
*	?	NC_000913	2710472 =	118 (1.280)	6 (0.070)	5/266	NT	5.1%	coding (53/1623 nt)	nadB	L‑aspartate oxidase
	?	NC_000913	2710505 =	110 (1.240)					coding (86/1623 nt)	nadB	L‑aspartate oxidase
*	?	NC_000913	2728214 =	NA (NA)	9 (0.100)	7/268	NT	NA	noncoding (971/2904 nt)	rrlG	23S ribosomal RNA
	?	NC_000913	2728240 =	NA (NA)					noncoding (945/2904 nt)	rrlG	23S ribosomal RNA
*	?	NC_000913	2729475 =	37 (0.400)	4 (0.050)	4/256	NT	10.3%	intergenic (‑31/+141)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA
	?	NC_000913	= 4168363	35 (0.410)					intergenic (+163/‑9)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu
*	?	NC_000913	2767655 =	86 (0.930)	11 (0.130)	10/252	NT	12.8%	intergenic (+300/‑55)	rnlB/yfjP	CP4‑57 prophage; antitoxin RnlB/CP4‑57 prophage; putative GTP‑binding protein YfjP
	?	NC_000913	2767683 =	72 (0.860)					intergenic (+328/‑27)	rnlB/yfjP	CP4‑57 prophage; antitoxin RnlB/CP4‑57 prophage; putative GTP‑binding protein YfjP
*	?	NC_000913	= 2769962	69 (0.750)	4 (0.040)	3/268	NT	5.2%	coding (260/702 nt)	yfjR	CP4‑57 prophage; putative DNA‑binding transcriptional regulator
	?	NC_000913	= 2769989	80 (0.890)					coding (287/702 nt)	yfjR	CP4‑57 prophage; putative DNA‑binding transcriptional regulator
*	?	NC_000913	2771953 =	102 (1.110)	8 (0.090)	7/260	NT	7.8%	coding (202/315 nt)	yfjU	CP4‑57 prophage; ArsC family protein YfjU
	?	NC_000913	2771980 =	93 (1.070)					coding (175/315 nt)	yfjU	CP4‑57 prophage; ArsC family protein YfjU
*	?	NC_000913	= 2779740	79 (0.860)	4 (0.050)	4/264	NT	5.3%	coding (2987/4581 nt)	ypjA	adhesin‑like autotransporter YpjA
	?	NC_000913	= 2779764	67 (0.760)					coding (2963/4581 nt)	ypjA	adhesin‑like autotransporter YpjA
*	?	NC_000913	= 2805380	80 (0.870)	4 (0.050)	4/258	NT	5.0%	coding (566/1203 nt)	proV	glycine betaine ABC transporter ATP binding subunit ProV
	?	NC_000913	= 2805401	77 (0.890)					coding (587/1203 nt)	proV	glycine betaine ABC transporter ATP binding subunit ProV
*	?	NC_000913	2819328 =	84 (0.910)	5 (0.060)	4/266	NT	5.6%	intergenic (‑182/+53)	csrA/alaS	carbon storage regulator/alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor
	?	NC_000913	2819377 =	89 (1.000)					intergenic (‑231/+4)	csrA/alaS	carbon storage regulator/alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor
*	?	NC_000913	2824278 =	80 (0.870)	5 (0.060)	5/266	NT	5.7%	coding (69/498 nt)	pncC	NMN aminohydrolase
	?	NC_000913	2824312 =	87 (0.980)					coding (35/498 nt)	pncC	NMN aminohydrolase
*	?	NC_000913	2831879 =	78 (0.850)	4 (0.050)	4/260	NT	5.4%	coding (411/1515 nt)	norR	DNA‑binding transcriptional dual regulator NorR
	?	NC_000913	2831921 =	66 (0.760)					coding (369/1515 nt)	norR	DNA‑binding transcriptional dual regulator NorR
*	?	NC_000913	= 2915914	91 (0.990)	6 (0.070)	5/264	NT	6.4%	coding (858/2757 nt)	barA	sensory histidine kinase BarA
	?	NC_000913	= 2915922	89 (1.010)					coding (866/2757 nt)	barA	sensory histidine kinase BarA
*	?	NC_000913	2930257 =	78 (0.850)	6 (0.070)	5/266	NT	7.5%	coding (682/1368 nt)	sdaB	L‑serine deaminase II
	?	NC_000913	2930309 =	72 (0.810)					coding (734/1368 nt)	sdaB	L‑serine deaminase II
*	?	NC_000913	2937698 =	99 (1.070)	5 (0.060)	5/268	NT	5.1%	coding (231/1419 nt)	fucK	L‑fuculokinase
	?	NC_000913	2937727 =	90 (1.010)					coding (260/1419 nt)	fucK	L‑fuculokinase
*	?	NC_000913	= 2953622	83 (0.900)	6 (0.070)	5/262	NT	6.8%	coding (2382/3543 nt)	recB	exodeoxyribonuclease V subunit RecB
	?	NC_000913	= 2953649	87 (0.990)					coding (2355/3543 nt)	recB	exodeoxyribonuclease V subunit RecB
*	?	NC_000913	3058426 =	83 (0.900)	6 (0.070)	6/264	NT	7.0%	intergenic (‑16/+240)	serA/rpiA	phosphoglycerate dehydrogenase/ribose‑5‑phosphate isomerase A
	?	NC_000913	3058475 =	80 (0.910)					intergenic (‑65/+191)	serA/rpiA	phosphoglycerate dehydrogenase/ribose‑5‑phosphate isomerase A
*	?	NC_000913	3123423 =	75 (0.810)	4 (0.050)	4/262	NT	5.5%	coding (383/2172 nt)	glcB	malate synthase G
	?	NC_000913	3123520 =	65 (0.740)					coding (286/2172 nt)	glcB	malate synthase G
*	?	NC_000913	= 3125606	76 (0.820)	8 (0.090)	7/264	NT	9.5%	coding (917/1053 nt)	glcE	glycolate dehydrogenase, putative FAD‑binding subunit
	?	NC_000913	= 3125626	80 (0.910)					coding (897/1053 nt)	glcE	glycolate dehydrogenase, putative FAD‑binding subunit
*	?	NC_000913	= 3133149	76 (0.820)	5 (0.060)	5/264	NT	6.3%	coding (64/759 nt)	yghR	putative ATP‑binding protein YghR
	?	NC_000913	= 3133161	77 (0.870)					coding (52/759 nt)	yghR	putative ATP‑binding protein YghR
*	?	NC_000913	= 3158891	72 (0.780)	12 (0.140)	11/262	NT	14.5%	intergenic (+7/+36)	yqhH/ygiQ	lipoprotein YqhH/radical SAM superfamily protein YgiQ
	?	NC_000913	= 3158922	73 (0.830)					intergenic (+38/+5)	yqhH/ygiQ	lipoprotein YqhH/radical SAM superfamily protein YgiQ
*	?	NC_000913	3203112 =	NA (NA)	6 (0.070)	6/262	NT	NA	coding (1222/1239 nt)	cca	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
	?	NC_000913	3203140 =	NA (NA)					intergenic (+11/+170)	cca/bacA	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase
*	?	NC_000913	= 3218100	84 (0.910)	6 (0.070)	5/264	NT	6.8%	coding (977/1521 nt)	aer	aerotaxis sensor receptor, flavoprotein
	?	NC_000913	= 3218127	84 (0.950)					coding (950/1521 nt)	aer	aerotaxis sensor receptor, flavoprotein
*	?	NC_000913	= 3227830	84 (0.910)	9 (0.100)	7/260	NT	10.1%	coding (30/1071 nt)	ygjJ	protein YgjJ
	?	NC_000913	= 3227835	82 (0.940)					coding (35/1071 nt)	ygjJ	protein YgjJ
*	?	NC_000913	= 3255287	NA (NA)	5 (0.060)	3/264	NT	NA	noncoding (34/36 nt)	other	REP236b
	?	NC_000913	= 3255319	NA (NA)					noncoding (2/36 nt)	other	REP236b
*	?	NC_000913	3277820 =	NA (NA)	6 (0.070)	6/260	NT	NA	noncoding (1/29 nt)	other	REPt238
	?	NC_000913	3277843 =	NA (NA)					noncoding (24/29 nt)	other	REPt238
*	?	NC_000913	3282284 =	64 (0.690)	4 (0.040)	4/268	NT	6.0%	coding (309/1155 nt)	agaS	putative galactosamine‑6‑phosphate deaminase/isomerase
	?	NC_000913	3282329 =	63 (0.700)					coding (354/1155 nt)	agaS	putative galactosamine‑6‑phosphate deaminase/isomerase
*	?	NC_000913	= 3299608	71 (0.770)	5 (0.060)	3/256	NT	6.8%	coding (308/444 nt)	yhbP	putative FMN binding protein YhbP
	?	NC_000913	= 3299630	72 (0.840)					coding (286/444 nt)	yhbP	putative FMN binding protein YhbP
*	?	NC_000913	3315701 =	88 (0.950)	5 (0.060)	4/266	NT	5.5%	coding (314/2673 nt)	infB	translation initiation factor IF‑2
	?	NC_000913	3315731 =	88 (0.990)					coding (284/2673 nt)	infB	translation initiation factor IF‑2
*	?	NC_000913	3378252 =	64 (0.690)	5 (0.060)	4/268	NT	7.3%	coding (400/429 nt)	rplM	50S ribosomal subunit protein L13
	?	NC_000913	3378316 =	65 (0.730)					coding (336/429 nt)	rplM	50S ribosomal subunit protein L13
*	?	NC_000913	= 3408870	77 (0.830)	5 (0.060)	4/260	NT	6.1%	coding (1264/1452 nt)	panF	pantothenate:Na(+) symporter
	?	NC_000913	= 3408895	82 (0.940)					coding (1289/1452 nt)	panF	pantothenate:Na(+) symporter
*	?	NC_000913	= 3414185	64 (0.690)	4 (0.050)	4/264	NT	6.1%	coding (322/1158 nt)	acrE	multidrug efflux pump membrane fusion lipoprotein AcrE
	?	NC_000913	= 3414221	63 (0.710)					coding (358/1158 nt)	acrE	multidrug efflux pump membrane fusion lipoprotein AcrE
*	?	NC_000913	3417147 =	76 (0.820)	4 (0.050)	3/264	NT	5.5%	coding (2115/3105 nt)	acrF	multidrug efflux pump RND permease AcrF
	?	NC_000913	3417182 =	66 (0.750)					coding (2150/3105 nt)	acrF	multidrug efflux pump RND permease AcrF
*	?	NC_000913	= 3423554	86 (0.930)	12 (0.130)	9/274	NT	12.3%	intergenic (‑12/+26)	rrfF/thrV	5S ribosomal RNA/tRNA‑Thr
	?	NC_000913	= 3423821	NA (NA)					intergenic (‑34/+59)	rrfD/rrlD	5S ribosomal RNA/23S ribosomal RNA
*	?	NC_000913	3470277 =	NA (NA)	7 (0.080)	6/262	NT	NA	coding (1053/1185 nt)	tufA	translation elongation factor Tu 1
	?	NC_000913	3470311 =	NA (NA)					coding (1019/1185 nt)	tufA	translation elongation factor Tu 1
*	?	NC_000913	= 3521823	63 (0.680)	4 (0.050)	4/258	NT	5.7%	coding (150/540 nt)	hofN	DNA utilization protein HofN
	?	NC_000913	= 3521847	74 (0.860)					coding (126/540 nt)	hofN	DNA utilization protein HofN
*	?	NC_000913	3535566 =	101 (1.100)	6 (0.070)	5/264	NT	6.3%	coding (303/1353 nt)	envZ	sensory histidine kinase EnvZ
	?	NC_000913	3535601 =	83 (0.940)					coding (268/1353 nt)	envZ	sensory histidine kinase EnvZ
*	?	NC_000913	= 3549484	96 (1.040)	8 (0.090)	6/262	NT	8.1%	coding (587/2085 nt)	malQ	4‑alpha‑glucanotransferase
	?	NC_000913	= 3549499	91 (1.040)					coding (572/2085 nt)	malQ	4‑alpha‑glucanotransferase
*	?	NC_000913	3587686 =	87 (0.940)	5 (0.060)	4/272	NT	5.4%	coding (428/744 nt)	ugpQ	glycerophosphodiester phosphodiesterase
	?	NC_000913	3587731 =	89 (0.980)					coding (383/744 nt)	ugpQ	glycerophosphodiester phosphodiesterase
*	?	NC_000913	3599139 =	104 (1.130)	6 (0.070)	4/258	NT	6.2%	coding (520/1104 nt)	livJ	branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein
	?	NC_000913	3599173 =	84 (0.970)					coding (486/1104 nt)	livJ	branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein
*	?	NC_000913	= 3615279	87 (0.940)	5 (0.060)	4/266	NT	5.4%	coding (39/945 nt)	nikB	Ni(2(+)) ABC transporter membrane subunit NikB
	?	NC_000913	= 3615302	90 (1.010)					coding (62/945 nt)	nikB	Ni(2(+)) ABC transporter membrane subunit NikB
*	?	NC_000913	= 3621534	NA (NA)	4 (0.050)	4/260	NT	100%	coding (2343/4236 nt)	rhsB	rhs element protein RhsB
	?	NC_000913	= 3621592	0 (0.000)					coding (2401/4236 nt)	rhsB	rhs element protein RhsB
*	?	NC_000913	3630988 =	86 (0.930)	6 (0.070)	5/266	NT	7.0%	coding (1603/1623 nt)	yhiJ	DUF4049 domain‑containing protein YhiJ
	?	NC_000913	3631005 =	76 (0.860)					coding (1586/1623 nt)	yhiJ	DUF4049 domain‑containing protein YhiJ
*	?	NC_000913	3636691 =	84 (0.910)	6 (0.070)	6/264	NT	7.2%	coding (720/1203 nt)	yhiN	putative oxidoreductase YhiN
	?	NC_000913	3636718 =	74 (0.840)					coding (693/1203 nt)	yhiN	putative oxidoreductase YhiN
*	?	NC_000913	= 3649868	95 (1.030)	7 (0.080)	5/268	NT	7.2%	coding (934/1290 nt)	arsB	arsenite/antimonite:H(+) antiporter
	?	NC_000913	= 3649901	88 (0.980)					coding (967/1290 nt)	arsB	arsenite/antimonite:H(+) antiporter
*	?	NC_000913	= 3663395	75 (0.810)	4 (0.050)	4/264	NT	5.3%	coding (2982/3114 nt)	mdtF	multidrug efflux pump RND permease MdtF
	?	NC_000913	= 3663419	70 (0.790)					coding (3006/3114 nt)	mdtF	multidrug efflux pump RND permease MdtF
*	?	NC_000913	3665737 =	107 (1.160)	13 (0.150)	10/262	NT	11.6%	coding (74/825 nt)	gadX	DNA‑binding transcriptional dual regulator GadX
	?	NC_000913	3665756 =	97 (1.110)					coding (55/825 nt)	gadX	DNA‑binding transcriptional dual regulator GadX
*	?	NC_000913	3670807 =	82 (0.890)	4 (0.050)	4/266	NT	5.2%	coding (1216/1650 nt)	treF	cytoplasmic trehalase
	?	NC_000913	3670847 =	67 (0.750)					coding (1256/1650 nt)	treF	cytoplasmic trehalase
*	?	NC_000913	3675219 =	94 (1.020)	5 (0.060)	5/264	NT	5.7%	coding (434/1323 nt)	yhjE	putative transporter YhjE
	?	NC_000913	3675257 =	76 (0.860)					coding (472/1323 nt)	yhjE	putative transporter YhjE
*	?	NC_000913	3719794 =	99 (1.070)	9 (0.100)	8/258	NT	9.1%	intergenic (+26/‑255)	yiaG/cspA	putative DNA‑binding transcriptional regulator YiaG/cold shock protein CspA
	?	NC_000913	3719816 =	88 (1.020)					intergenic (+48/‑233)	yiaG/cspA	putative DNA‑binding transcriptional regulator YiaG/cold shock protein CspA
*	?	NC_000913	= 3721001	73 (0.790)	5 (0.060)	5/262	NT	6.4%	noncoding (369/1443 nt)	IS150	repeat region
	?	NC_000913	= 3721017	77 (0.880)					noncoding (385/1443 nt)	IS150	repeat region
*	?	NC_000913	= 3779138	91 (0.990)	7 (0.080)	7/260	NT	7.5%	coding (85/777 nt)	lldR	DNA‑binding transcriptional dual regulator LldR
	?	NC_000913	= 3779144	87 (1.000)					coding (91/777 nt)	lldR	DNA‑binding transcriptional dual regulator LldR
*	?	NC_000913	3783963 =	101 (1.100)	7 (0.080)	6/266	NT	6.7%	coding (166/468 nt)	secB	SecB chaperone
	?	NC_000913	3783996 =	97 (1.090)					coding (133/468 nt)	secB	SecB chaperone
*	?	NC_000913	= 3844365	77 (0.830)	5 (0.060)	4/262	NT	6.4%	coding (402/1767 nt)	adeD	adenine deaminase
	?	NC_000913	= 3844391	74 (0.850)					coding (428/1767 nt)	adeD	adenine deaminase
*	?	NC_000913	3854880 =	79 (0.860)	6 (0.070)	5/258	NT	7.1%	coding (959/1185 nt)	emrD	multidrug efflux pump EmrD
	?	NC_000913	3854940 =	83 (0.960)					coding (1019/1185 nt)	emrD	multidrug efflux pump EmrD
*	?	NC_000913	= 3854888	82 (0.890)	5 (0.060)	5/258	NT	5.9%	coding (967/1185 nt)	emrD	multidrug efflux pump EmrD
	?	NC_000913	= 3854930	83 (0.960)					coding (1009/1185 nt)	emrD	multidrug efflux pump EmrD
*	?	NC_000913	= 3857685	86 (0.930)	6 (0.070)	4/260	NT	6.8%	coding (720/1494 nt)	yidJ	putative sulfatase/phosphatase
	?	NC_000913	= 3857715	83 (0.960)					coding (690/1494 nt)	yidJ	putative sulfatase/phosphatase
*	?	NC_000913	3872019 =	78 (0.850)	7 (0.080)	7/264	NT	8.2%	coding (980/1149 nt)	dgoD	D‑galactonate dehydratase
	?	NC_000913	3872047 =	82 (0.930)					coding (952/1149 nt)	dgoD	D‑galactonate dehydratase
*	?	NC_000913	3930611 =	85 (0.920)	5 (0.060)	5/262	NT	6.0%	coding (483/1497 nt)	ravA	regulatory ATPase RavA
	?	NC_000913	3930652 =	76 (0.870)					coding (442/1497 nt)	ravA	regulatory ATPase RavA
*	?	NC_000913	= 3962703	NA (NA)	6 (0.070)	6/264	NT	NA	noncoding (34/36 nt)	other	REP286
	?	NC_000913	= 3962735	NA (NA)					noncoding (2/36 nt)	other	REP286
*	?	NC_000913	= 3964101	74 (0.800)	4 (0.040)	4/268	NT	5.4%	coding (129/1485 nt)	gpp	guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase
	?	NC_000913	= 3964141	68 (0.760)					coding (89/1485 nt)	gpp	guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase
*	?	NC_000913	4037399 =	NA (NA)	8 (0.090)	3/272	NT	7.6%	intergenic (+64/‑120)	alaT/rrlA	tRNA‑Ala/23S ribosomal RNA
	?	NC_000913	4168481 =	99 (1.070)					intergenic (+34/‑160)	gltT/rrlB	tRNA‑Glu/23S ribosomal RNA
*	?	NC_000913	4054310 =	83 (0.900)	5 (0.060)	5/266	NT	6.1%	coding (969/1410 nt)	glnG	DNA‑binding transcriptional dual regulator NtrC
	?	NC_000913	4054347 =	74 (0.830)					coding (932/1410 nt)	glnG	DNA‑binding transcriptional dual regulator NtrC
*	?	NC_000913	4067707 =	84 (0.910)	6 (0.070)	4/258	NT	7.6%	coding (1570/2037 nt)	yihQ	sulfoquinovosidase
	?	NC_000913	4067734 =	68 (0.790)					coding (1543/2037 nt)	yihQ	sulfoquinovosidase
*	?	NC_000913	4071224 =	91 (0.990)	6 (0.070)	6/264	NT	6.8%	coding (533/1242 nt)	yihS	sulfoquinovose isomerase
	?	NC_000913	4071255 =	78 (0.880)					coding (502/1242 nt)	yihS	sulfoquinovose isomerase
*	?	NC_000913	= 4081273	77 (0.830)	7 (0.080)	7/258	NT	8.8%	coding (588/636 nt)	fdoI	formate dehydrogenase O subunit gamma
	?	NC_000913	= 4081294	73 (0.850)					coding (567/636 nt)	fdoI	formate dehydrogenase O subunit gamma
*	?	NC_000913	4096011 =	81 (0.880)	5 (0.060)	4/264	NT	6.2%	coding (1438/1470 nt)	rhaB	rhamnulokinase
	?	NC_000913	4096045 =	75 (0.850)					coding (1404/1470 nt)	rhaB	rhamnulokinase
*	?	NC_000913	= 4108705	NA (NA)	6 (0.070)	6/262	NT	NA	intergenic (+191/‑129)	pfkA/sbp	6‑phosphofructokinase I/sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp
	?	NC_000913	= 4108710	NA (NA)					intergenic (+196/‑124)	pfkA/sbp	6‑phosphofructokinase I/sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp
*	?	NC_000913	4113199 =	71 (0.770)	4 (0.050)	4/264	NT	5.5%	coding (233/300 nt)	yiiS	DUF406 domain‑containing protein YiiS
	?	NC_000913	4113226 =	69 (0.780)					coding (260/300 nt)	yiiS	DUF406 domain‑containing protein YiiS
*	?	NC_000913	4118819 =	116 (1.260)	7 (0.080)	6/258	NT	6.4%	intergenic (+59/+26)	zapB/rraA	cell division factor ZapB/ribonuclease E inhibitor protein A
	?	NC_000913	4118841 =	95 (1.100)					intergenic (+81/+4)	zapB/rraA	cell division factor ZapB/ribonuclease E inhibitor protein A
*	?	NC_000913	= 4155534	58 (0.630)	4 (0.050)	4/264	NT	6.6%	coding (534/1005 nt)	argC	N‑acetylglutamylphosphate reductase
	?	NC_000913	= 4155577	57 (0.650)					coding (577/1005 nt)	argC	N‑acetylglutamylphosphate reductase
*	?	NC_000913	4168332 =	51 (0.550)	4 (0.050)	4/256	NT	8.9%	intergenic (+132/‑40)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu
	?	NC_000913	4168374 =	35 (0.410)					noncoding (3/76 nt)	gltT	tRNA‑Glu
*	?	NC_000913	= 4190599	96 (1.040)	9 (0.110)	9/256	NT	9.0%	intergenic (‑112/+136)	sroH/thiH	small RNA SroH/2‑iminoacetate synthase
	?	NC_000913	= 4190612	92 (1.080)					intergenic (‑125/+123)	sroH/thiH	small RNA SroH/2‑iminoacetate synthase
*	?	NC_000913	4200145 =	87 (0.940)	8 (0.090)	6/254	NT	9.3%	intergenic (+51/‑136)	yjaG/hupA	conserved protein YjaG/DNA‑binding protein HU‑alpha
	?	NC_000913	4200182 =	76 (0.900)					intergenic (+88/‑99)	yjaG/hupA	conserved protein YjaG/DNA‑binding protein HU‑alpha
*	?	NC_000913	4231169 =	95 (1.030)	6 (0.070)	6/262	NT	6.8%	coding (816/873 nt)	rluF	23S rRNA pseudouridine(2604) and tRNA(Tyr) pseudouridine(35) synthase
	?	NC_000913	4231205 =	75 (0.860)					coding (852/873 nt)	rluF	23S rRNA pseudouridine(2604) and tRNA(Tyr) pseudouridine(35) synthase
*	?	NC_000913	4231956 =	73 (0.790)	8 (0.090)	6/260	NT	10.6%	coding (1278/1350 nt)	lysC	aspartate kinase III
	?	NC_000913	4231979 =	66 (0.760)					coding (1255/1350 nt)	lysC	aspartate kinase III
*	?	NC_000913	4254001 =	NA (NA)	5 (0.060)	5/262	NT	NA	noncoding (31/34 nt)	other	REP317c
	?	NC_000913	4254031 =	NA (NA)					noncoding (1/34 nt)	other	REP317c
*	?	NC_000913	= 4270829	91 (0.990)	6 (0.070)	6/264	NT	6.5%	coding (172/357 nt)	yjbR	PF04237 family protein YjbR
	?	NC_000913	= 4270866	85 (0.960)					coding (209/357 nt)	yjbR	PF04237 family protein YjbR
*	?	NC_000913	= 4299823	74 (0.800)	5 (0.060)	5/266	NT	6.3%	coding (1208/1467 nt)	mdtP	putative multidrug efflux pump outer membrane channel
	?	NC_000913	= 4299848	78 (0.880)					coding (1183/1467 nt)	mdtP	putative multidrug efflux pump outer membrane channel
*	?	NC_000913	= 4304585	84 (0.910)	5 (0.060)	5/254	NT	5.9%	intergenic (‑182/+27)	ytcA/yjcS	putative lipoprotein YtcA/alkyl sulfatase
	?	NC_000913	= 4304591	81 (0.950)					intergenic (‑188/+21)	ytcA/yjcS	putative lipoprotein YtcA/alkyl sulfatase
*	?	NC_000913	= 4341795	75 (0.810)	7 (0.090)	6/240	NT	8.9%	intergenic (‑167/‑116)	melR/melA	DNA‑binding transcriptional dual regulator MelR/alpha‑galactosidase
	?	NC_000913	= 4341815	79 (0.990)					intergenic (‑187/‑96)	melR/melA	DNA‑binding transcriptional dual regulator MelR/alpha‑galactosidase
*	?	NC_000913	4363384 =	87 (0.940)	8 (0.090)	6/260	NT	8.4%	coding (1659/1698 nt)	dsbD	protein disulfide oxidoreductase ‑ DsbDreduced
	?	NC_000913	4363422 =	93 (1.070)					coding (1621/1698 nt)	dsbD	protein disulfide oxidoreductase ‑ DsbDreduced
*	?	NC_000913	= 4363391	88 (0.950)	5 (0.060)	5/260	NT	5.4%	coding (1652/1698 nt)	dsbD	protein disulfide oxidoreductase ‑ DsbDreduced
	?	NC_000913	= 4363413	93 (1.070)					coding (1630/1698 nt)	dsbD	protein disulfide oxidoreductase ‑ DsbDreduced
*	?	NC_000913	4374122 =	86 (0.930)	7 (0.080)	7/260	NT	7.9%	coding (113/870 nt)	yjeJ	protein YjeJ
	?	NC_000913	4374144 =	82 (0.940)					coding (91/870 nt)	yjeJ	protein YjeJ
*	?	NC_000913	= 4405997	85 (0.920)	8 (0.090)	7/268	NT	8.5%	intergenic (+12/‑193)	purA/nsrR	adenylosuccinate synthetase/DNA‑binding transcriptional repressor NsrR
	?	NC_000913	= 4406018	89 (0.990)					intergenic (+33/‑172)	purA/nsrR	adenylosuccinate synthetase/DNA‑binding transcriptional repressor NsrR
*	?	NC_000913	= 4417460	88 (0.950)	8 (0.090)	7/262	NT	8.7%	coding (509/750 nt)	yjfP	carboxylesterase
	?	NC_000913	= 4417479	85 (0.970)					coding (528/750 nt)	yjfP	carboxylesterase
*	?	NC_000913	= 4429568	76 (0.820)	9 (0.100)	7/270	NT	9.8%	intergenic (+13/‑296)	fklB/cycA	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB/serine/alanine/glycine/cycloserine:H(+)symporter
	?	NC_000913	= 4429590	91 (1.010)					intergenic (+35/‑274)	fklB/cycA	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB/serine/alanine/glycine/cycloserine:H(+)symporter
*	?	NC_000913	= 4446407	78 (0.850)	6 (0.070)	5/264	NT	7.5%	coding (2296/3780 nt)	tamB	translocation and assembly module subunit TamB
	?	NC_000913	= 4446433	73 (0.830)					coding (2322/3780 nt)	tamB	translocation and assembly module subunit TamB
*	?	NC_000913	4463016 =	90 (0.980)	6 (0.070)	6/264	NT	7.2%	intergenic (‑356/+38)	nrdD/treC	anaerobic ribonucleoside‑triphosphate reductase/trehalose‑6‑phosphate hydrolase
	?	NC_000913	4463042 =	68 (0.770)					intergenic (‑382/+12)	nrdD/treC	anaerobic ribonucleoside‑triphosphate reductase/trehalose‑6‑phosphate hydrolase
*	?	NC_000913	4486252 =	106 (1.150)	10 (0.120)	7/260	NT	10.3%	coding (35/1101 nt)	lptF	lipopolysaccharide transport system protein LptF
	?	NC_000913	4486291 =	75 (0.860)					coding (74/1101 nt)	lptF	lipopolysaccharide transport system protein LptF
*	?	NC_000913	= 4512396	73 (0.790)	5 (0.060)	5/258	NT	6.4%	coding (19/957 nt)	fecD	ferric citrate ABC transporter membrane subunit FecD
	?	NC_000913	= 4512406	77 (0.890)					coding (9/957 nt)	fecD	ferric citrate ABC transporter membrane subunit FecD
*	?	NC_000913	4526958 =	80 (0.870)	6 (0.070)	5/264	NT	7.2%	coding (580/633 nt)	sgcE	KpLE2 phage‑like element; putative epimerase SgcE
	?	NC_000913	4526988 =	79 (0.900)					coding (550/633 nt)	sgcE	KpLE2 phage‑like element; putative epimerase SgcE
*	?	NC_000913	= 4534139	99 (1.070)	6 (0.070)	6/256	NT	6.1%	intergenic (‑86/+291)	topAI/yjhZ	KpLE2 phage‑like element; toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/KpLE2 phage‑like element; putative acetyltransferase YjhZ
	?	NC_000913	= 4534160	92 (1.080)					intergenic (‑107/+270)	topAI/yjhZ	KpLE2 phage‑like element; toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/KpLE2 phage‑like element; putative acetyltransferase YjhZ
*	?	NC_000913	4542682 =	97 (1.050)	65 (0.750)	52/258	NT	44.3%	intergenic (+49/‑433)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	4542996 =	73 (0.850)					intergenic (+363/‑119)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
*	?	NC_000913	= 4542690	97 (1.050)	80 (0.930)	58/258	NT	49.4%	intergenic (+57/‑425)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	= 4542986	73 (0.850)					intergenic (+353/‑129)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
*	?	NC_000913	= 4556943	112 (1.210)	6 (0.070)	6/266	NT	5.1%	coding (31/84 nt)	idlP	iraD leader peptide
	?	NC_000913	= 4556951	116 (1.310)					coding (39/84 nt)	idlP	iraD leader peptide
*	?	NC_000913	= 4583124	82 (0.890)	8 (0.090)	8/262	NT	8.5%	intergenic (‑76/+125)	hsdM/hsdR	type I restriction enzyme EcoKI methyltransferase component/type I restriction enzyme EcoKI endonuclease component
	?	NC_000913	= 4583237	94 (1.070)					intergenic (‑189/+12)	hsdM/hsdR	type I restriction enzyme EcoKI methyltransferase component/type I restriction enzyme EcoKI endonuclease component
*	?	NC_000913	= 4638146	56 (0.610)	6 (0.070)	5/254	NT	10.2%	intergenic (+26/‑32)	creC/creD	sensory histidine kinase CreC/putative inner membrane protein
	?	NC_000913	= 4638170	54 (0.640)					intergenic (+50/‑8)	creC/creD	sensory histidine kinase CreC/putative inner membrane protein