mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 66,706 | T→C | 68.8% | intergenic (‑174/‑168) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 66,726 | T→C | 70.4% | intergenic (‑194/‑148) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 104,052 | G→T | 8.4% | intergenic (+91/‑140) | lpxC → / → secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| RA | 122,580 | T→C | 5.9% | A133A (GCT→GCC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 122,853 | G→C | 5.2% | V224V (GTG→GTC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 298,191 | T→G | 7.7% | S32R (AGC→CGC) | paoA ← | PaoABC aldehyde oxidoreductase, 2Fe‑2S subunit |
| RA | 417,885 | T→G | 13.0% | intergenic (+70/‑89) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| JC | 505,358 | 14 bp→14 bp | 6.0% | coding (1465‑1478/2505 nt) | copA ← | copper transporter |
| RA | 692,043 | T→A | 5.0% | noncoding (30/75 nt) | glnV ← | tRNA‑Gln |
| RA | 692,249 | T→A | 8.7% | noncoding (38/75 nt) | glnW ← | tRNA‑Gln |
| RA | 802,799 | C→G | 8.6% | intergenic (‑62/+90) | ybhC ← / ← ybhB | acyl‑CoA thioesterase, lipoprotein/kinase inhibitor homolog, UPF0098 family |
| RA | 999,598 | A→C | 5.5% | T66P (ACG→CCG) | ycbF → | putative periplasmic pilin chaperone |
| RA | 1,203,380 | G→C | 5.3% | A142P (GCA→CCA) | stfP → | e14 prophage; uncharacterized protein |
| RA | 1,241,461 | A→G | 10.5% | W458R (TGG→CGG) | treA ← | periplasmic trehalase |
| RA | 1,282,421 | A→C | 6.2% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,813 | T→A | 5.4% | intergenic (‑29/+181) | tyrV ← / ← tyrT | tRNA‑Tyr/tRNA‑Tyr |
| RA | 1,302,989 | T→G | 11.5% | intergenic (‑87/‑56) | clsA ← / → yciY | cardiolipin synthase 1/uncharacterized protein |
| RA | 1,460,359 | A→G | 9.8% | pseudogene (711/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,593 | C→G | 8.0% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,461,169 | C→T | 5.1% | pseudogene (1521/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,546,448 | C→A | 5.5% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,702,966 | T→A | 9.6% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,062 | T→A | 14.6% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,140 | C→A | 9.0% | V655V (GTC→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,146 | C→A | 6.1% | A657A (GCC→GCA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,158 | A→C | 16.0% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,295 | T→A | 10.9% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 2,290,355 | G→A | 16.9% | A50V (GCA→GTA) | ccmB ← | heme exporter subunit |
| RA | 2,530,282 | G→A | 25.2% | I105I (ATC→ATT) | pdxK ← | pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
| RA | 2,554,355 | G→T | 7.8% | intergenic (+98/‑372) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,711,673 | A→C | 9.6% | V72G (GTT→GGT) | yfiF ← | putative methyltransferase |
| RA | 2,762,276 | C→T | 12.9% | L85L (CTG→TTG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,278 | G→A | 13.1% | L85L (CTG→CTA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,281 | C→T | 10.8% | R86R (CGC→CGT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,284 | A→T | 10.3% | L87L (CTA→CTT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,287 | T→C | 10.4% | R88R (CGT→CGC) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,288 | C→A | 10.1% | R89R (CGG→AGG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,293 | G→A | 10.2% | E90E (GAG→GAA) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,299 | A→T | 10.3% | Q92H (CAA→CAT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,304 | C→A | 9.9% | T94N (ACC→AAC) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,308 | T→G | 10.2% | G95G (GGT→GGG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,309 | A→C | 10.3% | K96Q (AAA→CAA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,311 | A→G | 10.5% | K96K (AAA→AAG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,312 | C→G | 10.0% | Q97E (CAG→GAG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,314 | G→A | 10.3% | Q97Q (CAG→CAA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,320 | G→T | 9.6% | P99P (CCG→CCT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,925 | T→G | 5.2% | intergenic (+80/‑137) | yfjQ → / → yfjR | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| RA | 3,263,328 | A→C | 6.8% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,441 | A→C | 5.6% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,554 | A→C | 6.2% | intergenic (+593/+21) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,447,085 | C→T | 30.6% | A68T (GCT→ACT) | gspB ← | part of gsp divergon involved in type II protein secretion |
| RA | 3,462,400 | A→G | 5.5% | S271S (AGT→AGC) | chiA ← | periplasmic endochitinase |
| RA | 3,462,438 | C→A | 7.0% | A259S (GCA→TCA) | chiA ← | periplasmic endochitinase |
| RA | 3,462,439 | C→A | 6.4% | A258A (GCG→GCT) ‡ | chiA ← | periplasmic endochitinase |
| RA | 3,462,441 | C→A | 5.4% | A258S (GCG→TCG) ‡ | chiA ← | periplasmic endochitinase |
| RA | 3,462,676 | A→T | 5.8% | A179A (GCT→GCA) | chiA ← | periplasmic endochitinase |
| RA | 3,991,405 | A→C | 14.1% | P21P (CCA→CCC) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,991,409 | A→C | 5.3% | S23R (AGC→CGC) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,991,416 | T→G | 10.0% | L25R (CTT→CGT) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,063,843 | A→C | 13.2% | intergenic (‑82/+32) | yihR ← / ← yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| RA | 4,106,987 | G→A | 6.9% | A55V (GCC→GTC) | glpK ← | glycerol kinase |
| JC | 4,175,921 | Δ18 bp | 12.9% | coding (644‑661/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,176,299 | A→G | 25.9% | N341S (AAC→AGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,264,190 | C→G | 6.0% | T46T (ACC→ACG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,193 | C→G | 6.5% | G47G (GGC→GGG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,200 | A→C | 6.7% | K50Q (AAA→CAA) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,201 | A→G | 6.7% | K50R (AAA→AGA) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,202 | A→G | 6.7% | K50K (AAA→AAG) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,205 | A→G | 6.7% | E51E (GAA→GAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,211 | T→A | 6.6% | T53T (ACT→ACA) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,220 | C→T | 11.2% | H56H (CAC→CAT) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,226 | T→G | 15.3% | V58V (GTT→GTG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,241 | A→G | 16.5% | K63K (AAA→AAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,244 | G→C | 14.4% | L64L (CTG→CTC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,247 | A→G | 14.2% | A65A (GCA→GCG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,256 | G→A | 18.9% | A68A (GCG→GCA) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,257 | A→G | 18.9% | S69G (AGC→GGC) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,259 | C→T | 18.7% | S69S (AGC→AGT) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,264 | A→G | 18.2% | Y71C (TAT→TGT) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,271 | T→C | 14.7% | R73R (CGT→CGC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,274 | A→G | 13.5% | K74K (AAA→AAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,277 | T→C | 12.3% | G75G (GGT→GGC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,278 | T→G | 12.4% | S76A (TCT→GCT) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,280 | T→G | 12.2% | S76S (TCT→TCG) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,286 | T→C | 12.7% | V78V (GTT→GTC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,289 | T→C | 11.1% | Y79Y (TAT→TAC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,304 | G→T | 6.4% | L84L (CTG→CTT) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,307 | T→C | 6.7% | R85R (CGT→CGC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,382,371 | G→T | 9.3% | intergenic (+7/‑29) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 246563 | 247227 | 665 | 153 [137] | [128] 209 | lafU | pseudogene, lateral flagellar motor protein fragment |
| * | * | ÷ | CP009273 | 2597319 | 2598085 | 767 | 177 [116] | [145] 159 | hyfC | hydrogenase 4, membrane subunit |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 64557 | 315 (0.710) | 17 (0.050) | 8/94 | NT | 5.4% | coding (1224/2352 nt) | polB | DNA polymerase II |
| ? | CP009273 | = 64577 | 337 (0.900) | coding (1204/2352 nt) | polB | DNA polymerase II | |||||
| * | ? | CP009273 | 66560 = | 328 (0.740) | 510 (1.890) +22 bp |
39/68 | NT | 66.9% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 502 (1.130) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | 108768 = | 342 (0.770) | 18 (0.050) | 6/100 | NT | 5.6% | coding (319/744 nt) | zapD | FtsZ stabilizer |
| ? | CP009273 | 108799 = | 302 (0.760) | coding (288/744 nt) | zapD | FtsZ stabilizer | |||||
| * | ? | CP009273 | 138464 = | NA (NA) | 6 (0.020) | 6/94 | NT | NA | intergenic (+10/+31) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase |
| ? | CP009273 | 138487 = | NA (NA) | intergenic (+33/+8) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase | |||||
| * | ? | CP009273 | = 173463 | NA (NA) | 8 (0.020) | 6/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 221943 = | NA (NA) | 63 (0.170) | 15/94 | NT | NA | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | CP009273 | 221964 = | NA (NA) | intergenic (+20/‑23) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | CP009273 | 248296 = | 145 (0.330) | 11 (0.030) | 6/96 | NT | 7.2% | coding (912/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | 248360 = | 159 (0.420) | coding (976/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | = 248303 | 121 (0.270) | 15 (0.040) | 6/96 | NT | 10.2% | coding (919/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | = 248351 | 159 (0.420) | coding (967/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | = 270064 | NA (NA) | 4 (0.010) | 3/98 | NT | NA | noncoding (797/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 270113 | NA (NA) | noncoding (748/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 270331 = | NA (NA) | 3 (0.010) | 3/94 | NT | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270374 = | NA (NA) | noncoding (169/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | 311112 = | NA (NA) | 3 (0.010) | 3/86 | NT | NA | coding (111/300 nt) | insE1 | IS3 transposase A |
| ? | CP009273 | 311338 = | NA (NA) | coding (41/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | 311360 = | NA (NA) | 3 (0.010) | 3/106 | NT | NA | coding (63/867 nt) | insF1 | IS3 transposase B |
| ? | CP009273 | 311379 = | NA (NA) | coding (82/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | 360070 = | 386 (0.870) | 232 (0.700) +CTGATCAGTGAATT |
17/84 | NT | 44.7% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 380 (0.850) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 360096 | 403 (0.910) | 651 (1.490) | 28/110 | NT | 59.3% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 497 (1.140) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
| * | ? | CP009273 | 360104 = | 394 (0.890) | 567 (1.270) | 67/112 | NT | 59.0% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 376748 = | NA (NA) | 21 (0.060) | 12/94 | NT | NA | intergenic (‑33/‑59) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | 376768 = | NA (NA) | intergenic (‑53/‑39) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | 377137 = | NA (NA) | 3 (0.010) | 3/94 | NT | NA | coding (331/366 nt) coding (8/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
| ? | CP009273 | 377209 = | NA (NA) | coding (80/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 377145 | NA (NA) | 16 (0.040) | 4/94 | NT | NA | coding (339/366 nt) coding (16/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
| ? | CP009273 | = 377199 | NA (NA) | coding (70/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 394482 | NA (NA) | 8 (0.020) | 5/98 | NT | NA | coding (308/309 nt) | yaiY | DUF2755 family inner membrane protein |
| ? | CP009273 | = 394503 | NA (NA) | coding (287/309 nt) | yaiY | DUF2755 family inner membrane protein | |||||
| * | ? | CP009273 | = 410282 | 345 (0.780) | 44 (0.110) | 10/98 | NT | 11.9% | coding (928/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent |
| ? | CP009273 | = 410288 | 348 (0.890) | coding (922/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent | |||||
| * | ? | CP009273 | = 438477 | NA (NA) | 7 (0.020) | 3/88 | NT | NA | noncoding (4/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 438479 | NA (NA) | noncoding (6/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 442673 = | 353 (0.790) | 34 (0.100) | 11/90 | NT | 9.1% | coding (489/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | 442734 = | 396 (1.110) | coding (428/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | = 442683 | 353 (0.790) | 30 (0.080) | 11/90 | NT | 8.1% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 396 (1.110) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | 519440 = | 329 (0.740) | 20 (0.050) | 11/96 | NT | 5.0% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 471 (1.230) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 603521 | 8 (0.020) | 4 (0.010) | 3/94 | NT | 37.3% | coding (1/1113 nt) | insL1 | IS186 transposase |
| ? | CP009273 | = 603589 | NA (NA) | coding (69/1113 nt) | insL1 | IS186 transposase | |||||
| * | ? | CP009273 | = 610426 | 182 (0.410) | 21 (0.060) | 5/96 | NT | 9.2% | coding (814/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent |
| ? | CP009273 | = 610453 | 260 (0.680) | coding (841/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent | |||||
| * | ? | CP009273 | 699831 = | 358 (0.800) | 33 (0.090) | 11/96 | NT | 10.9% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 234 (0.610) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
| * | ? | CP009273 | = 711204 | 248 (0.560) | 20 (0.050) | 8/104 | NT | 8.4% | coding (337/495 nt) | ybfP | lipoprotein |
| ? | CP009273 | = 711218 | 204 (0.490) | coding (351/495 nt) | ybfP | lipoprotein | |||||
| * | ? | CP009273 | 719576 = | 315 (0.710) | 12 (0.030) | 6/94 | NT | 5.2% | coding (295/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| ? | CP009273 | 719613 = | 175 (0.470) | coding (258/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein | |||||
| * | ? | CP009273 | = 725679 | NA (NA) | 4 (0.010) | 4/100 | NT | NA | coding (641/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725702 | NA (NA) | coding (664/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 729823 = | 54 (0.120) | 123 (0.280) | 6/110 | NT | 25.1% | pseudogene (235/1521 nt) | rhsO | pseudogene, Rhs family protein |
| ? | CP009273 | 3760581 = | 683 (1.560) | pseudogene (1/945 nt) | rhsJ | Rhs‑family protein | |||||
| * | ? | CP009273 | 772557 = | 124 (0.280) | 5 (0.010) | 4/98 | NT | 6.1% | coding (760/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex |
| ? | CP009273 | 772577 = | 45 (0.120) | coding (780/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex | |||||
| * | ? | CP009273 | = 775865 | 448 (1.010) | 24 (0.070) | 9/88 | NT | 6.3% | intergenic (+20/‑145) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys |
| ? | CP009273 | = 775875 | 362 (1.040) | intergenic (+30/‑135) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys | |||||
| * | ? | CP009273 | = 776085 | NA (NA) | 67 (0.160) +GTT |
4/106 | NT | 11.7% | noncoding (76/76 nt) | lysT | tRNA‑Lys |
| ? | CP009273 | = 776400 | 536 (1.200) | intergenic (+26/‑124) | lysW/valZ | tRNA‑Lys/tRNA‑Val | |||||
| * | ? | CP009273 | = 777093 | 113 (0.250) | 62 (0.160) +TTTGAGT |
3/98 | NT | 38.5% | noncoding (61/76 nt) | lysQ | tRNA‑Lys |
| ? | CP009273 | = 2514886 | NA (NA) | noncoding (614/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | = 831686 | NA (NA) | 5 (0.010) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 859744 = | NA (NA) | 12 (0.030) | 7/92 | NT | NA | coding (647/663 nt) | fsaA | fructose‑6‑phosphate aldolase 1 |
| ? | CP009273 | 859774 = | NA (NA) | intergenic (+14/+62) | fsaA/moeB | fructose‑6‑phosphate aldolase 1/molybdopterin synthase sulfurylase | |||||
| * | ? | CP009273 | = 902734 | 202 (0.450) | 16 (0.040) | 10/98 | NT | 8.1% | coding (1005/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | CP009273 | = 902785 | 186 (0.480) | coding (954/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | CP009273 | 910536 = | NA (NA) | 10 (0.030) | 7/92 | NT | 7.2% | intergenic (‑223/+272) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | 910538 = | 158 (0.360) | intergenic (‑225/+270) | ybjE/aqpZ | putative transporter/aquaporin Z | |||||
| * | ? | CP009273 | 910549 = | 83 (0.190) | 6 (0.020) | 3/98 | NT | 7.7% | intergenic (‑236/+259) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | 910582 = | 72 (0.180) | intergenic (‑269/+226) | ybjE/aqpZ | putative transporter/aquaporin Z | |||||
| * | ? | CP009273 | 921364 = | 49 (0.110) | 18 (0.050) | 10/100 | NT | 29.1% | noncoding (64/88 nt) | serW | tRNA‑Ser |
| ? | CP009273 | 1092768 = | NA (NA) | intergenic (+483/+253) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 964816 = | 148 (0.330) | 13 (0.030) | 6/94 | NT | 7.9% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 178 (0.480) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
| * | ? | CP009273 | 1023817 = | NA (NA) | 7 (0.020) | 5/84 | NT | NA | intergenic (+2/+43) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein |
| ? | CP009273 | 1023851 = | NA (NA) | intergenic (+36/+9) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein | |||||
| * | ? | CP009273 | 1036003 = | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (5/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1036035 = | NA (NA) | intergenic (+42/‑38) | cbdX/appA | putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase | |||||
| * | ? | CP009273 | 1066816 = | 363 (0.820) | 25 (0.060) | 13/98 | NT | 6.5% | coding (406/801 nt) | rutD | putative aminoacrylate hydrolase, reactive intermediate detoxification |
| ? | CP009273 | 1066859 = | 400 (1.030) | coding (363/801 nt) | rutD | putative aminoacrylate hydrolase, reactive intermediate detoxification | |||||
| * | ? | CP009273 | 1070341 = | NA (NA) | 6 (0.020) | 5/94 | NT | NA | noncoding (1/28 nt) | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1070369 = | NA (NA) | intergenic (+33/+7) | rutR/putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase | |||||
| * | ? | CP009273 | = 1092557 | NA (NA) | 38 (0.100) | 12/96 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092561 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1101408 = | 148 (0.330) | 22 (0.060) | 12/94 | NT | 14.4% | coding (133/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| ? | CP009273 | 1101450 = | 137 (0.370) | coding (175/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit | |||||
| * | ? | CP009273 | 1111080 = | NA (NA) | 15 (0.040) | 5/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| * | ? | CP009273 | = 1161581 | 228 (0.510) | 16 (0.050) | 7/82 | NT | 9.7% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 132 (0.410) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | = 1161581 | 228 (0.510) | 17 (0.040) +G |
10/110 | NT | 8.3% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 153 (0.340) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | 1203246 = | 311 (0.700) | 63 (0.200) | 20/80 | NT | 26.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 122 (0.380) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 364 (0.820) | 64 (0.200) | 21/80 | NT | 25.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 122 (0.380) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1209039 = | 391 (0.880) | 38 (0.100) | 12/92 | NT | 11.4% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 269 (0.740) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
| * | ? | CP009273 | 1228601 = | 389 (0.870) | 21 (0.060) | 9/94 | NT | 6.7% | intergenic (‑115/+31) | dsbB/nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| ? | CP009273 | 1228623 = | 254 (0.680) | intergenic (‑137/+9) | dsbB/nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter | |||||
| * | ? | CP009273 | 1228897 = | 407 (0.910) | 241 (0.590) | 55/102 | NT | 40.8% | coding (1277/1542 nt) | nhaB | sodium:proton antiporter |
| ? | CP009273 | = 1298865 | 329 (0.810) | coding (775/909 nt) | oppC | oligopeptide transporter subunit | |||||
| * | ? | CP009273 | 1238033 = | 1054 (2.370) | 37 (0.120) | 22/76 | NT | 6.0% | coding (504/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | CP009273 | 1238051 = | 443 (1.470) | coding (486/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | CP009273 | 1242300 = | 945 (2.120) | 366 (0.870) | 54/106 | NT | 28.9% | coding (533/1698 nt) | treA | periplasmic trehalase |
| ? | CP009273 | = 1292972 | 906 (2.150) | coding (606/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase | |||||
| * | ? | CP009273 | 1264549 = | NA (NA) | 10 (0.030) | 5/94 | NT | NA | intergenic (+74/+75) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small |
| ? | CP009273 | 1264575 = | NA (NA) | intergenic (+100/+49) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small | |||||
| * | ? | CP009273 | 1282050 = | NA (NA) | 7 (0.020) | 3/98 | NT | NA | noncoding (1/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 1282075 = | NA (NA) | noncoding (26/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 1314763 = | 301 (0.680) | 14 (0.040) | 7/94 | NT | 5.7% | coding (879/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| ? | CP009273 | 1314808 = | 207 (0.550) | coding (834/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase | |||||
| * | ? | CP009273 | 1424533 = | 229 (0.510) | 18 (0.050) | 9/94 | NT | 5.9% | coding (1228/3363 nt) | stfR | Rac prophage; putative tail fiber protein |
| ? | CP009273 | 1424679 = | 380 (1.020) | coding (1374/3363 nt) | stfR | Rac prophage; putative tail fiber protein | |||||
| * | ? | CP009273 | = 1426905 | NA (NA) | 17 (0.040) | 4/96 | NT | 95.2% | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | CP009273 | 1628833 = | 1 (0.000) | coding (310/576 nt) | tfaQ | Qin prophage; putative tail fiber assembly protein | |||||
| * | ? | CP009273 | 1433166 = | 247 (0.560) | 16 (0.040) | 9/96 | NT | 6.5% | coding (1876/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase |
| ? | CP009273 | 1433229 = | 249 (0.650) | coding (1813/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase | |||||
| * | ? | CP009273 | 1505831 = | 326 (0.730) | 22 (0.060) | 10/94 | NT | 7.5% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 268 (0.720) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
| * | ? | CP009273 | 1586885 = | NA (NA) | 4 (0.010) | 4/90 | NT | NA | intergenic (‑186/+37) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
| ? | CP009273 | 1586916 = | NA (NA) | intergenic (‑217/+6) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog | |||||
| * | ? | CP009273 | 1641311 = | 488 (1.100) | 25 (0.070) | 11/90 | NT | 7.0% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 277 (0.770) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1685627 = | 160 (0.360) | 14 (0.040) | 8/88 | NT | 10.0% | intergenic (+10/+216) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein |
| ? | CP009273 | 1685659 = | NA (NA) | intergenic (+42/+184) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein | |||||
| * | ? | CP009273 | = 1823129 | 205 (0.460) | 13 (0.030) | 7/94 | NT | 7.0% | coding (863/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | = 1823150 | 175 (0.470) | coding (842/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | CP009273 | = 1870380 | 339 (0.760) | 16 (0.040) | 7/94 | NT | 5.0% | coding (451/1182 nt) | yeaN | putative transporter |
| ? | CP009273 | = 1870397 | 320 (0.860) | coding (468/1182 nt) | yeaN | putative transporter | |||||
| * | ? | CP009273 | = 1871532 | 331 (0.740) | 25 (0.070) | 6/96 | NT | 8.4% | intergenic (+19/+3) | yeaO/yoaF | DUF488 family protein/DUF333 family outer membrane lipoprotein |
| ? | CP009273 | = 1871547 | 259 (0.680) | coding (243/255 nt) | yoaF | DUF333 family outer membrane lipoprotein | |||||
| * | ? | CP009273 | 1874084 = | 411 (0.920) | 86 (0.200) | 34/108 | NT | 17.8% | coding (122/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | 2507755 = | NA (NA) | intergenic (+32/‑55) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase | |||||
| * | ? | CP009273 | = 1874094 | 421 (0.950) | 102 (0.240) | 29/106 | NT | 20.4% | coding (112/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | = 2509092 | NA (NA) | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
| * | ? | CP009273 | 1894241 = | 299 (0.670) | 12 (0.030) | 5/90 | NT | 6.0% | coding (1558/1599 nt) | yoaD | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production |
| ? | CP009273 | 1894274 = | 135 (0.380) | coding (1591/1599 nt) | yoaD | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production | |||||
| * | ? | CP009273 | = 1909026 | 264 (0.590) | 16 (0.040) | 10/92 | NT | 6.4% | coding (48/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 |
| ? | CP009273 | = 1909032 | 252 (0.690) | coding (42/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 | |||||
| * | ? | CP009273 | = 1940291 | 247 (0.560) | 33 (0.090) | 9/96 | NT | 9.9% | intergenic (‑58/+81) | ruvA/yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein |
| ? | CP009273 | = 1940293 | 391 (1.030) | intergenic (‑60/+79) | ruvA/yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein | |||||
| * | ? | CP009273 | 1958516 = | 325 (0.730) | 21 (0.060) | 8/96 | NT | 7.6% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | CP009273 | 1958598 = | 229 (0.600) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
| * | ? | CP009273 | = 1980922 | 263 (0.590) | 20 (0.050) | 7/92 | NT | 8.5% | intergenic (+13/+66) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/uncharacterized protein |
| ? | CP009273 | = 1980931 | 213 (0.580) | intergenic (+22/+57) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/uncharacterized protein | |||||
| * | ? | CP009273 | = 1995529 | NA (NA) | 5 (0.010) | 3/98 | NT | NA | noncoding (81/99 nt) | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4607941 = | NA (NA) | noncoding (8/82 nt) | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 2006338 = | 414 (0.930) | 20 (0.050) | 13/92 | NT | 6.1% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 280 (0.770) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
| * | ? | CP009273 | = 2145164 | NA (NA) | 8 (0.020) | 5/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2161385 | 371 (0.830) | 21 (0.060) | 8/90 | NT | 6.7% | intergenic (‑90/+85) | yegZ/yegR | pseudogene, gpD phage P2‑like protein D/uncharacterized protein |
| ? | CP009273 | = 2161396 | 287 (0.800) | intergenic (‑101/+74) | yegZ/yegR | pseudogene, gpD phage P2‑like protein D/uncharacterized protein | |||||
| * | ? | CP009273 | = 2213096 | NA (NA) | 3 (0.010) | 3/100 | NT | NA | intergenic (‑136/+75) | osmF/bglX | putative ABC superfamily transporter periplasmic‑binding protein/beta‑D‑glucoside glucohydrolase, periplasmic |
| ? | CP009273 | = 2213103 | NA (NA) | intergenic (‑143/+68) | osmF/bglX | putative ABC superfamily transporter periplasmic‑binding protein/beta‑D‑glucoside glucohydrolase, periplasmic | |||||
| * | ? | CP009273 | = 2229998 | 311 (0.700) | 20 (0.050) | 11/92 | NT | 5.6% | intergenic (+19/+224) | preA/mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit |
| ? | CP009273 | = 2230012 | 425 (1.160) | intergenic (+33/+210) | preA/mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit | |||||
| * | ? | CP009273 | 2269311 = | 311 (0.700) | 35 (0.090) | 11/96 | NT | 11.9% | coding (560/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | 2269347 = | 250 (0.660) | coding (596/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family | |||||
| * | ? | CP009273 | 2279605 = | 363 (0.820) | 19 (0.060) | 9/86 | NT | 7.2% | coding (1751/1761 nt) | yejM | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| ? | CP009273 | 2279638 = | 208 (0.610) | intergenic (+23/‑52) | yejM/proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro | |||||
| * | ? | CP009273 | 2293603 = | 376 (0.840) | 14 (0.040) | 6/92 | NT | 5.3% | coding (137/696 nt) | napG | ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) |
| ? | CP009273 | 2293630 = | 188 (0.510) | coding (110/696 nt) | napG | ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) | |||||
| * | ? | CP009273 | 2323869 = | 378 (0.850) | 20 (0.050) | 6/94 | NT | 5.5% | pseudogene (4013/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | CP009273 | 2323928 = | 369 (0.990) | pseudogene (3954/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
| * | ? | CP009273 | = 2402276 | NA (NA) | 8 (0.020) | 6/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2436000 = | 304 (0.680) | 20 (0.050) | 8/94 | NT | 7.4% | coding (758/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | 2436103 = | 244 (0.650) | coding (861/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | = 2458952 | 260 (0.580) | 14 (0.040) | 9/94 | NT | 5.5% | coding (173/933 nt) | yfdC | putative inner membrane protein |
| ? | CP009273 | = 2458965 | 267 (0.710) | coding (186/933 nt) | yfdC | putative inner membrane protein | |||||
| * | ? | CP009273 | = 2499292 | 379 (0.850) | 22 (0.060) | 12/98 | NT | 5.6% | coding (820/1086 nt) | ypdF | Xaa‑Pro aminopeptidase |
| ? | CP009273 | = 2499321 | 410 (1.050) | coding (791/1086 nt) | ypdF | Xaa‑Pro aminopeptidase | |||||
| * | ? | CP009273 | 2542825 = | NA (NA) | 10 (0.030) | 6/98 | NT | NA | noncoding (1/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3556967 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 2548559 | NA (NA) | 6 (0.020) | 4/92 | NT | NA | noncoding (9/24 nt) | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2548565 | NA (NA) | noncoding (15/24 nt) | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2655809 | NA (NA) | 7 (0.020) | 6/98 | NT | 6.6% | noncoding (142/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | CP009273 | = 2655842 | 113 (0.250) | noncoding (175/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | CP009273 | = 2657620 | 297 (0.670) | 16 (0.040) | 6/94 | NT | 5.5% | intergenic (+16/‑129) | suhB/yfhR | inositol monophosphatase/putative S9 family prolyl oligopeptidase |
| ? | CP009273 | = 2657626 | 296 (0.790) | intergenic (+22/‑123) | suhB/yfhR | inositol monophosphatase/putative S9 family prolyl oligopeptidase | |||||
| * | ? | CP009273 | = 2680401 | NA (NA) | 4 (0.010) | 3/90 | NT | NA | noncoding (8/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2680405 | NA (NA) | noncoding (12/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2691481 | 458 (1.030) | 43 (0.110) | 13/100 | NT | 9.2% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 437 (1.100) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
| * | ? | CP009273 | 2747582 = | 408 (0.920) | 27 (0.070) | 4/94 | NT | 8.5% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 236 (0.630) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
| * | ? | CP009273 | = 2749471 | 330 (0.740) | 18 (0.050) | 8/90 | NT | 7.2% | intergenic (+734/‑47) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase |
| ? | CP009273 | = 2749488 | 200 (0.560) | intergenic (+751/‑30) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase | |||||
| * | ? | CP009273 | 2787742 = | 482 (1.080) | 34 (0.090) | 8/96 | NT | 8.8% | coding (131/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| ? | CP009273 | 2787778 = | 289 (0.760) | coding (167/1401 nt) | gabP | gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2845465 = | 260 (0.580) | 23 (0.060) | 11/96 | NT | 8.3% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 285 (0.750) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
| * | ? | CP009273 | = 2848992 | 428 (0.960) | 22 (0.060) | 7/96 | NT | 5.5% | coding (1296/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator |
| ? | CP009273 | = 2849010 | 389 (1.020) | coding (1314/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator | |||||
| * | ? | CP009273 | 2875593 = | 380 (0.850) | 13 (0.040) | 12/76 | NT | 5.0% | coding (404/483 nt) | casB | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| ? | CP009273 | 2875611 = | 236 (0.780) | coding (386/483 nt) | casB | CRISP RNA (crRNA) containing Cascade antiviral complex protein | |||||
| * | ? | CP009273 | = 2901356 | 229 (0.510) | 18 (0.050) | 9/88 | NT | 8.4% | intergenic (‑56/+32) | eno/pyrG | enolase/CTP synthetase |
| ? | CP009273 | = 2901357 | 213 (0.610) | intergenic (‑57/+31) | eno/pyrG | enolase/CTP synthetase | |||||
| * | ? | CP009273 | 2925176 = | NA (NA) | 10 (0.030) | 8/92 | NT | NA | noncoding (1/30 nt) | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2925206 = | NA (NA) | intergenic (+37/+18) | ygdG/fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase | |||||
| * | ? | CP009273 | 2935053 = | 416 (0.930) | 14 (0.040) | 6/94 | NT | 5.2% | coding (874/918 nt) | gcvA | glycine cleavage system transcriptional activator; autorepressor |
| ? | CP009273 | 2935079 = | 166 (0.440) | coding (848/918 nt) | gcvA | glycine cleavage system transcriptional activator; autorepressor | |||||
| * | ? | CP009273 | 2943957 = | NA (NA) | 9 (0.020) | 6/92 | NT | NA | intergenic (+25/+37) | argA/recD | fused acetylglutamate kinase homolog (inactive)/amino acid N‑acetyltransferase/exonuclease V (RecBCD complex), alpha chain |
| ? | CP009273 | 2943974 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2974100 | NA (NA) | 10 (0.030) | 6/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3031308 = | 409 (0.920) | 17 (0.040) | 7/98 | NT | 5.9% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 188 (0.480) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
| * | ? | CP009273 | = 3063441 | NA (NA) | 5 (0.010) | 3/98 | NT | NA | noncoding (80/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3063452 | NA (NA) | noncoding (91/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 3133702 = | 412 (0.930) | 16 (0.040) | 11/96 | NT | 5.1% | coding (457/489 nt) | hybE | hydrogenase 2‑specific chaperone |
| ? | CP009273 | 3133721 = | 246 (0.640) | coding (438/489 nt) | hybE | hydrogenase 2‑specific chaperone | |||||
| * | ? | CP009273 | = 3147712 | 283 (0.640) | 19 (0.050) | 10/94 | NT | 6.3% | coding (866/957 nt) | yqhC | transcriptional activator of yqhD |
| ? | CP009273 | = 3147725 | 331 (0.890) | coding (853/957 nt) | yqhC | transcriptional activator of yqhD | |||||
| * | ? | CP009273 | = 3202572 | 297 (0.670) | 22 (0.060) | 6/92 | NT | 9.4% | coding (1190/1464 nt) | ttdT | L‑tartrate/succinate antiporte |
| ? | CP009273 | = 3202615 | 180 (0.490) | coding (1233/1464 nt) | ttdT | L‑tartrate/succinate antiporte | |||||
| * | ? | CP009273 | 3202855 = | NA (NA) | 8 (0.020) | 3/94 | NT | NA | intergenic (+9/+34) | ttdT/tsaD | L‑tartrate/succinate antiporte/tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
| ? | CP009273 | 3202881 = | NA (NA) | intergenic (+35/+8) | ttdT/tsaD | L‑tartrate/succinate antiporte/tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein | |||||
| * | ? | CP009273 | 3215213 = | 264 (0.590) | 29 (0.080) | 10/96 | NT | 10.9% | coding (389/984 nt) | ebgR | transcriptional repressor |
| ? | CP009273 | 3215274 = | 250 (0.660) | coding (450/984 nt) | ebgR | transcriptional repressor | |||||
| * | ? | CP009273 | 3256491 = | 558 (1.250) | 30 (0.080) | 13/90 | NT | 6.6% | coding (529/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic |
| ? | CP009273 | 3256545 = | 403 (1.130) | coding (475/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | CP009273 | 3293574 = | 443 (1.000) | 22 (0.060) | 9/90 | NT | 6.7% | coding (250/303 nt) | yhbQ | GIY‑YIG nuclease superfamily protein |
| ? | CP009273 | 3293608 = | 259 (0.720) | coding (284/303 nt) | yhbQ | GIY‑YIG nuclease superfamily protein | |||||
| * | ? | CP009273 | = 3333655 | 353 (0.790) | 21 (0.060) | 13/94 | NT | 6.3% | coding (22/978 nt) | yrbG | putative calcium/sodium:proton antiporter |
| ? | CP009273 | = 3333682 | 327 (0.880) | coding (49/978 nt) | yrbG | putative calcium/sodium:proton antiporter | |||||
| * | ? | CP009273 | = 3348965 | 459 (1.030) | 24 (0.060) | 10/96 | NT | 5.5% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 428 (1.120) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | CP009273 | 3375198 = | 387 (0.870) | 34 (0.090) | 10/94 | NT | 10.1% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 283 (0.760) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | CP009273 | = 3385586 | 200 (0.450) | 10 (0.030) | 8/98 | NT | 5.4% | noncoding (152/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | = 3385603 | NA (NA) | noncoding (169/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
| * | ? | CP009273 | 3385620 = | NA (NA) | 6 (0.010) | 4/102 | NT | NA | noncoding (186/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | 3385646 = | NA (NA) | noncoding (212/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
| * | ? | CP009273 | 3423234 = | 454 (1.020) | 17 (0.050) | 8/90 | NT | 5.2% | coding (149/258 nt) | yrdB | DUF1488 family protein |
| ? | CP009273 | 3423267 = | 259 (0.720) | coding (116/258 nt) | yrdB | DUF1488 family protein | |||||
| * | ? | CP009273 | = 3454877 | 409 (0.920) | 20 (0.050) | 11/94 | NT | 5.4% | coding (51/510 nt) | gspH | putative general secretory pathway component, cryptic |
| ? | CP009273 | = 3454930 | 353 (0.950) | coding (104/510 nt) | gspH | putative general secretory pathway component, cryptic | |||||
| * | ? | CP009273 | = 3462138 | 473 (1.060) | 25 (0.080) | 11/78 | NT | 5.5% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 523 (1.690) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
| * | ? | CP009273 | = 3487124 | NA (NA) | 18 (0.050) | 8/96 | NT | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3487134 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3498161 = | NA (NA) | 6 (0.020) | 5/86 | NT | NA | noncoding (17/36 nt) | REP249 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP249 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 3498192 = | NA (NA) | intergenic (+50/+102) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| * | ? | CP009273 | 3509341 = | 685 (1.540) | 27 (0.070) | 8/94 | NT | 5.3% | intergenic (‑69/+38) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring |
| ? | CP009273 | 3509369 = | 381 (1.020) | intergenic (‑97/+10) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | = 3533124 | NA (NA) | 6 (0.020) | 5/94 | NT | NA | noncoding (20/34 nt) | REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3533141 | NA (NA) | intergenic (+76/‑381) | yhgF/feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A | |||||
| * | ? | CP009273 | = 3538010 | 322 (0.720) | 17 (0.050) | 9/94 | NT | 5.6% | coding (194/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase |
| ? | CP009273 | = 3538051 | 307 (0.820) | coding (153/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase | |||||
| * | ? | CP009273 | = 3601535 | 503 (1.130) | 22 (0.050) | 13/102 | NT | 5.3% | coding (1725/2199 nt) | zntA | zinc, cobalt and lead efflux system |
| ? | CP009273 | = 3601575 | 330 (0.810) | coding (1765/2199 nt) | zntA | zinc, cobalt and lead efflux system | |||||
| * | ? | CP009273 | = 3612627 | 306 (0.690) | 11 (0.030) | 7/98 | NT | 5.4% | coding (76/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3612667 | 116 (0.300) | coding (116/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3613129 | NA (NA) | 6 (0.010) | 4/106 | NT | NA | coding (578/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613200 | NA (NA) | coding (649/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3613137 | NA (NA) | 5 (0.010) | 5/98 | NT | NA | coding (586/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613192 | NA (NA) | coding (641/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3613276 = | NA (NA) | 27 (0.060) | 10/106 | NT | NA | coding (725/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3613329 = | NA (NA) | coding (778/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3614228 | NA (NA) | 10 (0.030) | 7/90 | NT | 100% | coding (1677/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3614368 | 0 (0.000) | coding (1817/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3614731 = | NA (NA) | 5 (0.010) | 4/98 | NT | 100% | coding (2180/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3614737 = | 0 (0.000) | coding (2186/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3615349 = | NA (NA) | 6 (0.020) | 4/96 | NT | 100% | coding (2798/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3615372 = | 0 (0.000) | coding (2821/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3615451 = | NA (NA) | 3 (0.010) | 3/102 | NT | 100% | coding (2900/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3615469 = | 0 (0.000) | coding (2918/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3618995 | NA (NA) | 10 (0.030) | 7/92 | NT | NA | noncoding (47/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3619028 | NA (NA) | noncoding (80/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 3630213 | 305 (0.690) | 63 (0.190) | 26/84 | NT | 21.7% | coding (558/1203 nt) | yhiN | putative oxidoreductase |
| ? | CP009273 | = 3630199 | 225 (0.670) | coding (572/1203 nt) | yhiN | putative oxidoreductase | |||||
| * | ? | CP009273 | = 3632677 | NA (NA) | 3 (0.010) | 3/112 | NT | NA | intergenic (+176/+68) | pitA/uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| ? | CP009273 | = 4127852 | NA (NA) | intergenic (‑267/+8) | yijF/gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase | |||||
| * | ? | CP009273 | = 3641246 | 567 (1.270) | 24 (0.100) | 16/62 | NT | 8.0% | intergenic (‑98/‑177) | dinQ/agrA | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/Inactive antisense sRNA |
| ? | CP009273 | 3641677 = | 236 (0.960) | noncoding (24/84 nt) | agrB | Antisense sRNA antitoxin for the DinQ toxin | |||||
| * | ? | CP009273 | 3652912 = | 516 (1.160) | 26 (0.070) | 9/98 | NT | 6.2% | coding (321/1158 nt) | mdtE | anaerobic multidrug efflux transporter, ArcA‑regulated |
| ? | CP009273 | 3652940 = | 335 (0.860) | coding (349/1158 nt) | mdtE | anaerobic multidrug efflux transporter, ArcA‑regulated | |||||
| * | ? | CP009273 | = 3693271 | 260 (0.580) | 18 (0.050) | 8/94 | NT | 7.2% | intergenic (+18/+69) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small |
| ? | CP009273 | = 3693281 | 249 (0.670) | intergenic (+28/+59) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small | |||||
| * | ? | CP009273 | 3701734 = | NA (NA) | 13 (0.030) | 7/96 | NT | 8.8% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 157 (0.350) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3701786 | 106 (0.240) | 6 (0.020) | 5/88 | NT | 6.7% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3729681 | NA (NA) | 4 (0.010) | 4/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
| * | ? | CP009273 | = 3767664 | NA (NA) | 5 (0.010) | 5/98 | NT | NA | noncoding (69/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3767694 | NA (NA) | noncoding (99/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 3808465 | NA (NA) | 7 (0.020) | 4/92 | NT | NA | noncoding (9/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3808469 | NA (NA) | noncoding (13/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3832491 = | 392 (0.880) | 21 (0.060) | 7/96 | NT | 8.0% | coding (884/924 nt) | yicL | EamA family inner membrane putative transporter |
| ? | CP009273 | 3832524 = | 149 (0.390) | coding (917/924 nt) | yicL | EamA family inner membrane putative transporter | |||||
| * | ? | CP009273 | 3847022 = | NA (NA) | 12 (0.030) | 6/88 | NT | NA | intergenic (+20/‑260) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| ? | CP009273 | 3847050 = | NA (NA) | intergenic (+48/‑232) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein | |||||
| * | ? | CP009273 | 3851553 = | 384 (0.860) | 36 (0.110) | 14/86 | NT | 12.2% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 225 (0.660) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | CP009273 | 3920778 = | 415 (0.930) | 59 (0.170) | 11/88 | NT | 16.1% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 291 (0.830) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | CP009273 | = 3921522 | 426 (0.960) | 23 (0.060) | 9/100 | NT | 5.5% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 403 (1.010) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
| * | ? | CP009273 | = 3935250 | NA (NA) | 88 (0.230) +AAGCTGT |
7/98 | NT | NA | noncoding (83/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4028968 | NA (NA) | noncoding (78/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 3999175 = | 421 (0.950) | 22 (0.060) | 11/96 | NT | 5.9% | intergenic (+84/‑49) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase |
| ? | CP009273 | 3999197 = | 336 (0.880) | intergenic (+106/‑27) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase | |||||
| * | ? | CP009273 | = 4034087 | 0 (0.000) | 55 (0.150) | 9/94 | NT | 100% | intergenic (+91/+179) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | CP009273 | = 4034092 | NA (NA) | intergenic (+96/+174) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | CP009273 | = 4047497 | 307 (0.690) | 24 (0.060) | 11/94 | NT | 7.8% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 308 (0.820) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
| * | ? | CP009273 | = 4049883 | NA (NA) | 10 (0.030) | 6/98 | NT | NA | noncoding (53/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 4049915 | NA (NA) | noncoding (85/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 4061067 = | 471 (1.060) | 28 (0.070) | 11/94 | NT | 7.8% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 266 (0.710) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
| * | ? | CP009273 | 4156417 = | NA (NA) | 10 (0.020) | 4/112 | NT | NA | intergenic (+204/‑170) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| ? | CP009273 | 4197929 = | NA (NA) | intergenic (‑469/‑146) | purH/rrsE | fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | 4161825 = | NA (NA) | 4 (0.010) | 3/96 | NT | 100% | intergenic (+141/‑160) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | CP009273 | 4161830 = | 0 (0.000) | intergenic (+146/‑155) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | CP009273 | 4190073 = | 516 (1.160) | 57 (0.160) | 13/90 | NT | 12.8% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 362 (1.010) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | CP009273 | 4306574 = | 181 (0.410) | 14 (0.040) | 9/98 | NT | 8.8% | coding (462/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | CP009273 | 4306632 = | 132 (0.340) | coding (404/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||
| * | ? | CP009273 | = 4308345 | 497 (1.120) | 26 (0.070) | 11/94 | NT | 6.5% | coding (237/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| ? | CP009273 | = 4308403 | 335 (0.900) | coding (179/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein | |||||
| * | ? | CP009273 | 4311466 = | 558 (1.250) | 25 (0.070) | 10/94 | NT | 5.8% | coding (48/453 nt) | phnG | ribophosphonate triphosphate synthase subunit |
| ? | CP009273 | 4311493 = | 346 (0.930) | coding (21/453 nt) | phnG | ribophosphonate triphosphate synthase subunit | |||||
| * | ? | CP009273 | 4315768 = | NA (NA) | 11 (0.030) | 8/98 | NT | NA | noncoding (150/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | 4315798 = | NA (NA) | noncoding (180/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | CP009273 | 4328027 = | 217 (0.490) | 20 (0.050) | 11/96 | NT | 7.8% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 290 (0.760) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
| * | ? | CP009273 | 4334630 = | NA (NA) | 6 (0.020) | 5/94 | NT | NA | intergenic (+23/+116) | melB/yjdF | melibiose:sodium symporter/DUF2238 family inner membrane protein |
| ? | CP009273 | 4334659 = | NA (NA) | noncoding (28/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 4375165 = | 508 (1.140) | 18 (0.050) | 9/90 | NT | 5.0% | intergenic (+7/‑45) | yjeM/yjeN | putative transporter/uncharacterized protein |
| ? | CP009273 | 4375192 = | 274 (0.770) | intergenic (+34/‑18) | yjeM/yjeN | putative transporter/uncharacterized protein | |||||
| * | ? | CP009273 | = 4382210 | 169 (0.380) | 17 (0.040) | 7/96 | NT | 10.2% | noncoding (34/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 155 (0.410) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
| * | ? | CP009273 | 4388394 = | 381 (0.860) | 19 (0.050) | 8/100 | NT | 5.5% | coding (1166/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | CP009273 | 4388416 = | 317 (0.800) | coding (1188/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
| * | ? | CP009273 | 4506708 = | 369 (0.830) | 24 (0.060) | 11/94 | NT | 7.9% | coding (827/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | CP009273 | 4506742 = | 250 (0.670) | coding (793/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | CP009273 | 4512275 = | 325 (0.730) | 27 (0.070) | 10/92 | NT | 7.4% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 407 (1.110) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | CP009273 | = 4548130 | 326 (0.730) | 18 (0.050) | 6/88 | NT | 6.3% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 282 (0.810) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | CP009273 | 4583141 = | NA (NA) | 10 (0.030) | 7/90 | NT | NA | intergenic (+12/+37) | tsr/yjjL | methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter |
| ? | CP009273 | 4583171 = | NA (NA) | intergenic (+42/+7) | tsr/yjjL | methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter | |||||