breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
RA | 958 | G→T | 17.7% | D208Y (GAC→TAC) | thrA → | Bifunctional aspartokinase/homoserine dehydrogenase 1 |
RA | 2,577 | C→A | 47.4% | G747G (GGC→GGA) | thrA → | Bifunctional aspartokinase/homoserine dehydrogenase 1 |
RA | 3,618 | C→A | 16.1% | P273Q (CCG→CAG) | thrB → | homoserine kinase |
RA | 5,144 | G→A | 100% | intergenic (+124/‑90) | thrC → / → yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
RA | 10,444 | G→T | 100% | F17L (TTC→TTA) | satP ← | succinate‑acetate transporter |
RA | 12,901 | G→A | 100% | D247N (GAT→AAT) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
RA | 22,030 | G→T | 10.7% | P208P (CCG→CCT) | ribF → | bifunctional riboflavin kinase/FAD synthetase |
RA | 25,546 | G→T | 94.1% | D114Y (GAC→TAC) | lspA → | prolipoprotein signal peptidase (signal peptidase II) |
RA | 29,139 | G→T | 100% | G256C (GGT→TGT) | dapB → | dihydrodipicolinate reductase |
RA | 31,710 | C→A | 6.7% | I298I (ATC→ATA) | carB → | carbamoyl‑phosphate synthase large subunit |
RA | 32,632 | G→T | 42.2% | V606F (GTC→TTC) | carB → | carbamoyl‑phosphate synthase large subunit |
RA | 32,659 | C→A | 5.9% | R615S (CGC→AGC) | carB → | carbamoyl‑phosphate synthase large subunit |
RA | 32,802 | C→A | 9.8% | I662I (ATC→ATA) | carB → | carbamoyl‑phosphate synthase large subunit |
RA | 33,567 | C→A | 7.4% | V917V (GTC→GTA) | carB → | carbamoyl‑phosphate synthase large subunit |
RA | 42,079 | G→A | 18.9% | intergenic (‑148/‑324) | caiT ← / → fixA | putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
RA | 42,150 | G→A | 93.3% | intergenic (‑219/‑253) | caiT ← / → fixA | putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
RA | 42,415 | A→C | 19.1% | T5P (ACT→CCT) | fixA → | anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
RA | 47,857 | C→A | 10.6% | S30* (TCG→TAG) | kefC → | potassium:proton antiporter |
RA | 49,029 | A→C | 10.0% | S421R (AGC→CGC) | kefC → | potassium:proton antiporter |
RA | 49,840 | G→T | 100% | A6A (GCG→GCT) | folA → | dihydrofolate reductase |
RA | 54,392 | G→T | 5.9% | A104E (GCG→GAG) | surA ← | peptidyl‑prolyl cis‑trans isomerase (PPIase) |
RA | 54,887 | G→T | 7.8% | N741K (AAC→AAA) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 55,590 | G→T | 100% | T507K (ACG→AAG) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 56,677 | G→T | 100% | R145S (CGC→AGC) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 69,367 | C→A | 23.8% | M16I (ATG→ATT) | thiQ ← | thiamine, thiamine pyrophosphate ABC transporter ATPase; ThiBPQ thiamine, thiamine pyrophosphate importer |
RA | 69,546 | A→T | 38.9% | F488Y (TTC→TAC) | thiP ← | thiamine, thiamine pyrophosphate ABC transporter permease; ThiBPQ thiamine, thiamine pyrophosphate importer |
RA | 70,465 | G→T | 16.9% | H182N (CAT→AAT) | thiP ← | thiamine, thiamine pyrophosphate ABC transporter permease; ThiBPQ thiamine, thiamine pyrophosphate importer |
RA | 70,744 | G→T | 7.0% | R89R (CGG→AGG) | thiP ← | thiamine, thiamine pyrophosphate ABC transporter permease; ThiBPQ thiamine, thiamine pyrophosphate importer |
RA | 76,821 | G→T | 38.6% | G177G (GGC→GGA) | leuC ← | 3‑isopropylmalate dehydratase large subunit |
RA | 80,123 | C→T | 91.6% | G25S (GGC→AGC) | leuL ← | leu operon leader peptide |
RA | 81,562 | C→A | 100% | I236I (ATC→ATA) | leuO → | global transcription factor |
RA | 82,037 | C→T | 6.4% | intergenic (+238/‑80) | leuO → / → ilvI | global transcription factor/acetolactate synthase 3 large subunit |
RA | 84,481 | G→A | 18.1% | intergenic (+146/‑34) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
RA | 86,729 | G→T | 15.3% | R50L (CGT→CTT) | rsmH → | 16S rRNA m(4)C1402 methyltransferase, SAM‑dependent |
RA | 90,252 | G→T | 18.6% | A200A (GCG→GCT) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase |
RA | 93,391 | G→T | 87.5% | T301T (ACG→ACT) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide transferase |
RA | 95,873 | G→T | 45.5% | S328S (TCG→TCT) | ftsW → | lipid II flippase; integral membrane protein involved in stabilizing FstZ ring during cell division |
RA | 97,521 | C→A | 100% | A90A (GCC→GCA) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
RA | 102,736 | C→A | 6.4% | I315I (ATC→ATA) | ftsZ → | GTP‑binding tubulin‑like cell division protein |
RA | 102,769 | G→T | 6.2% | V326V (GTG→GTT) | ftsZ → | GTP‑binding tubulin‑like cell division protein |
RA | 103,467 | G→T | 100% | D142Y (GAT→TAT) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
RA | 104,561 | G→T | 100% | A124S (GCG→TCG) | secM → | regulator of secA translation |
RA | 107,298 | C→A | 6.9% | R845S (CGT→AGT) | secA → | preprotein translocase subunit, ATPase |
RA | 108,648 | Δ1 bp | 100% | coding (439/744 nt) | zapD ← | FtsZ stabilizer |
RA | 110,883 | A→T | 12.3% | Y318F (TAC→TTC) | guaC → | GMP reductase |
RA | 112,729 | G→T | 19.4% | D286E (GAC→GAA) | hofB ← | T2SE secretion family protein; P‑loop ATPase superfamily protein |
RA | 114,825 | G→A | 20.1% | S103F (TCC→TTC) | nadC ← | quinolinate phosphoribosyltransferase |
RA | 116,052 | G→T | 12.6% | L95L (CTG→CTT) | ampE → | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation |
RA | 118,526 | C→T | 14.1% | intergenic (‑488/‑53) | aroP ← / → pdhR | aromatic amino acid transporter/pyruvate dehydrogenase complex repressor; autorepressor |
RA | 118,873 | G→T | 100% | D99Y (GAC→TAC) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
RA | 119,467 | G→T | 42.5% | intergenic (+124/‑37) | pdhR → / → aceE | pyruvate dehydrogenase complex repressor; autorepressor/pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
RA | 120,313 | C→A | 20.0% | T270T (ACC→ACA) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
RA | 121,004 | C→A | 7.1% | R501S (CGT→AGT) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
RA | 122,790 | G→T | 16.2% | A203A (GCG→GCT) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
RA | 124,371 | C→A | 47.3% | intergenic (+297/‑28) | aceF → / → lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/lipoamide dehydrogenase, E3 component is part of three enzyme complexes |
RA | 126,667 | G→T | 20.4% | R361R (CGG→AGG) | yacH ← | uncharacterized protein |
RA | 134,028 | G→T | 92.2% | A153A (GCG→GCT) | cueO → | multicopper oxidase (laccase) |
RA | 137,071 | G→T | 6.5% | I214I (ATC→ATA) | gcd ← | glucose dehydrogenase |
RA | 142,460 | T→A | 100% | F298Y (TTC→TAC) | yadE → | putative polysaccharide deacetylase lipoprotein |
RA | 146,343 | G→T | 55.5% | T366T (ACC→ACA) | yadC ← | putative fimbrial‑like adhesin protein |
RA | 149,697 | G→T | 13.1% | I739I (ATC→ATA) | htrE ← | putative outer membrane usher protein |
RA | 151,620 | C→A | 54.2% | K98N (AAG→AAT) | htrE ← | putative outer membrane usher protein |
RA | 153,472 | G→T | 94.8% | intergenic (‑102/+268) | yadN ← / ← folK | putative fimbrial‑like adhesin protein/2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
RA | 158,287 | C→A | 100% | D78Y (GAC→TAC) | ligT ← | 2'‑5' RNA ligase |
RA | 159,121 | A→T | 10.6% | E177V (GAA→GTA) | hrpB → | putative ATP‑dependent helicase |
RA | 161,068 | A→C | 23.5% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
RA | 162,905 | G→T | 14.4% | V563V (GTG→GTT) | mrcB → | fused glycosyl transferase and transpeptidase |
RA | 163,686 | C→A | 38.5% | Q824K (CAG→AAG) | mrcB → | fused glycosyl transferase and transpeptidase |
RA | 166,662 | C→A | 6.8% | S133* (TCG→TAG) | fhuC → | iron‑hydroxamate transporter subunit |
RA | 167,106 | G→T | 7.5% | A15A (GCG→GCT) | fhuD → | iron‑hydroxamate transporter subunit |
RA | 176,783 | G→T | 89.6% | D354Y (GAT→TAT) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
RA | 177,895 | A→T | 11.9% | A175A (GCA→GCT) | degP → | serine endoprotease (protease Do), membrane‑associated |
RA | 183,669 | C→A | 13.7% | R490L (CGC→CTC) | glnD ← | uridylyltransferase |
RA | 186,159 | A→G | 9.3% | intergenic (‑166/‑40) | map ← / → tff | methionine aminopeptidase/novel sRNA, function unknown |
RA | 194,124 | C→A | 40.2% | I364I (ATC→ATA) | rseP → | inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease |
RA | 201,962 | A→T | 86.9% | D117V (GAT→GTT) | dnaE → | DNA polymerase III alpha subunit |
RA | 207,709 | C→A | 5.5% | A515E (GCA→GAA) | ldcC → | lysine decarboxylase 2, constitutive |
RA | 212,284 | G→T | 6.4% | A177S (GCA→TCA) | nlpE → | lipoprotein involved with copper homeostasis and adhesion |
RA | 214,084 | G→T | 7.4% | G393G (GGC→GGA) | proS ← | prolyl‑tRNA synthetase |
RA | 217,887 | C→T | 5.1% | W74* (TGG→TGA) | metI ← | DL‑methionine transporter subunit |
RA | 217,932 | A→C | 89.6% | I59M (ATT→ATG) | metI ← | DL‑methionine transporter subunit |
RA | 219,803 | A→T | 16.6% | T162S (ACG→TCG) | gmhB → | D,D‑heptose 1,7‑bisphosphate phosphatase |
RA | 225,620 | C→A | 10.8% | intergenic (+129/‑34) | aspU → / → dkgB | tRNA‑Asp/2,5‑diketo‑D‑gluconate reductase B |
RA | 229,707 | G→T | 18.8% | R246S (CGT→AGT) | mltD ← | putative membrane‑bound lytic murein transglycosylase D |
RA | 230,579 | C→T | 100% | E231K (GAA→AAA) | gloB ← | hydroxyacylglutathione hydrolase |
RA | 232,860 | G→T | 100% | D103Y (GAT→TAT) | dnaQ → | DNA polymerase III epsilon subunit |
RA | 236,234 | A→T | 90.7% | V148E (GTG→GAG) | yafV ← | putative NAD(P)‑binding C‑N hydrolase family amidase |
RA | 238,195 | G→T | 100% | V532V (GTC→GTA) | fadE ← | acyl coenzyme A dehydrogenase |
RA | 239,590 | C→A | 6.1% | M67I (ATG→ATT) | fadE ← | acyl coenzyme A dehydrogenase |
RA | 241,156 | A→T | 10.8% | K115* (AAA→TAA) | yafJ → | putative amidotransfease |
RA | 247,048 | G→T | 5.6% | pseudogene (490/756 nt) | lafU → | pseudogene, lateral flagellar motor protein fragment |
RA | 248,447 | C→T | 6.4% | intergenic (+7/‑45) | dinB → / → yafN | DNA polymerase IV/antitoxin of the YafO‑YafN toxin‑antitoxin system |
RA | 248,486 | C→A | 9.2% | intergenic (+46/‑6) | dinB → / → yafN | DNA polymerase IV/antitoxin of the YafO‑YafN toxin‑antitoxin system |
RA | 250,909 | A→T | 6.0% | L432Q (CTG→CAG) | pepD ← | aminoacyl‑histidine dipeptidase (peptidase D) |
RA | 253,769 | C→T | 13.1% | V252V (GTC→GTT) | frsA → | fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
RA | 255,284 | G→T | 32.2% | N176K (AAC→AAA) | phoE ← | outer membrane phosphoporin protein E |
RA | 255,487 | A→T | 6.9% | S109T (TCT→ACT) | phoE ← | outer membrane phosphoporin protein E |
RA | 258,054 | G→T | 50.2% | G281C (GGC→TGC) | proA → | gamma‑glutamylphosphate reductase |
RA | 259,494 | G→T | 6.2% | C75* (TGC→TGA) | yafW ← | CP4‑6 prophage; antitoxin of the YkfI‑YafW toxin‑antitoxin system |
RA | 262,114 | C→A | 89.9% | D51Y (GAT→TAT) | yafY ← | lipoprotein, inner membrane; overproduction stimulates degP expression; CP4‑6 prophage |
RA | 263,270 | C→A | 14.9% | V149V (GTG→GTT) | yafZ ← | CP4‑6 prophage; conserved protein |
RA | 274,735 | A→T | 93.1% | pseudogene (138/348 nt) | afuB ← | pseudogene, CP4‑6 prophage; ABC transporter permease family;Phage or Prophage Related |
RA | 279,334 | C→A | 23.3% | I141I (ATC→ATA) | yagF → | CP4‑6 prophage; dehydratase family protein |
RA | 279,800 | G→T | 5.8% | E297* (GAA→TAA) | yagF → | CP4‑6 prophage; dehydratase family protein |
RA | 284,904 | C→A | 13.0% | intergenic (‑31/+108) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
RA | 285,869 | G→T | 17.2% | L50I (CTC→ATC) | argF ← | ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
RA | 290,012 | C→T | 5.8% | D167N (GAT→AAT) | yagM ← | CP4‑6 prophage; uncharacterized protein |
RA | 291,453 | A→T | 16.2% | L452* (TTA→TAA) | intF ← | CP4‑6 prophage; putative phage integrase |
RA | 294,344 | C→A | 6.0% | V32L (GTA→TTA) | paoD ← | moco insertion factor for PaoABC aldehyde oxidoreductase |
RA | 294,929 | C→A | 7.6% | E573* (GAA→TAA) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 296,308 | G→T | 13.9% | A113E (GCG→GAG) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 298,201 | C→A | 5.5% | L28L (CTG→CTT) | paoA ← | PaoABC aldehyde oxidoreductase, 2Fe‑2S subunit |
RA | 299,623 | C→A | 13.9% | G91* (GGA→TGA) | ykgJ ← | UPF0153 cysteine cluster protein |
RA | 300,770 | C→A | 6.1% | V49V (GTG→GTT) | ecpE ← | ECP production pilus chaperone |
RA | 302,428 | G→T | 17.6% | P34Q (CCG→CAG) | ecpD ← | polymerized tip adhesin of ECP fibers |
RA | 307,479 | G→A | 5.3% | intergenic (‑432/‑344) | ecpR ← / → ykgL | putative transcriptional regulator for the ecp operon/uncharacterized protein |
RA | 310,697 | G→T | 5.5% | pseudogene (630/872 nt) | eaeH → | pseudogene, attaching and effacing protein homology;factor; Not classified |
RA | 312,532 | G→A | 100% | pseudogene (349/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
RA | 314,408 | A→G | 44.0% | D435D (GAT→GAC) | rclA ← | reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
RA | 314,566 | C→A | 5.9% | D383Y (GAT→TAT) | rclA ← | reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
RA | 317,205 | G→A | 94.4% | intergenic (+413/‑114) | rclR → / → ykgE | reactive chlorine species (RCS)‑specific activator of the rcl genes/cysteine‑rich LutA family protein; putative electron transport chain YkgEFG component |
RA | 319,024 | C→A | 5.1% | R326S (CGC→AGC) | ykgF → | ferridoxin‑like LutB family protein; putative electron transport chain YkgEFG component |
RA | 319,381 | G→T | 6.2% | D445Y (GAC→TAC) | ykgF → | ferridoxin‑like LutB family protein; putative electron transport chain YkgEFG component |
RA | 319,825 | G→T | 13.3% | E119D (GAG→GAT) | ykgG → | LutC family protein; putative electron transport chain YkgEFG component |
RA | 319,890 | C→A | 5.2% | S141* (TCG→TAG) | ykgG → | LutC family protein; putative electron transport chain YkgEFG component |
RA | 320,920 | G→A | 100% | S52S (AGC→AGT) | ykgH ← | putative inner membrane protein |
RA | 321,223 | C→A | 100% | intergenic (‑148/+65) | ykgH ← / ← betA | putative inner membrane protein/choline dehydrogenase, a flavoprotein |
RA | 332,599 | G→T | 8.3% | A37A (GCG→GCT) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
RA | 335,247 | C→A | 7.6% | N404K (AAC→AAA) | yahG → | DUF1116 family protein |
RA | 337,720 | G→T | 7.4% | E295D (GAG→GAT) | yahJ → | putative metallo‑dependent hydrolase domain deaminase |
RA | 344,800 | G→T | 100% | E136D (GAG→GAT) | prpB → | 2‑methylisocitrate lyase |
RA | 353,486 | A→T | 7.6% | intergenic (+321/+16) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
RA | 353,489 | C→T | 5.8% | intergenic (+324/+13) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
RA | 360,317 | C→A | 42.9% | intergenic (‑251/+344) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
RA | 360,752 | A→G | 100% | V331A (GTG→GCG) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,667 | T→A | 21.0% | Q26L (CAG→CTG) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,806 | G→A | 100% | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor/mhp operon transcriptional activator |
RA | 362,159 | G→T | 94.0% | I165I (ATC→ATA) | mhpR ← | mhp operon transcriptional activator |
RA | 364,561 | G→T | 5.6% | D18Y (GAC→TAC) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
RA | 367,252 | C→A | 8.5% | pseudogene (39/348 nt) | mhpC → | pseudogene, IS30 insertion |
RA | 372,091 | C→A | 6.6% | R393R (CGG→AGG) | mhpT → | 3‑hydroxyphenylpropionic transporter |
RA | 372,581 | G→T | 6.4% | A118A (GCG→GCT) | yaiL → | DUF2058 family protein |
RA | 380,236 | C→A | 20.0% | intergenic (‑164/‑452) | yaiS ← / → tauA | putative PIG‑L family deacetylase/taurine transporter subunit |
RA | 385,485 | C→T | 17.6% | intergenic (‑302/‑222) | hemB ← / → yaiT | 5‑aminolevulinate dehydratase (porphobilinogen synthase)/pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
RA | 385,815 | G→T | 92.7% | pseudogene (109/1458 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
RA | 390,551 | T→G | 8.9% | L197R (CTG→CGG) | yaiV → | putative transcriptional regulator |
RA | 395,951 | G→T | 47.9% | V143V (GTC→GTA) | ddlA ← | D‑alanine‑D‑alanine ligase A |
RA | 396,883 | A→G | 100% | Q14Q (CAA→CAG) | iraP → | anti‑RssB factor, RpoS stabilzer during Pi starvation; anti‑adapter protein |
RA | 397,959 | G→A | 94.3% | A253T (GCG→ACG) | phoA → | bacterial alkaline phosphatase |
RA | 399,531 | G→T | 15.0% | A125S (GCG→TCG) | yaiC → | diguanylate cyclase, cellulose regualtor |
RA | 400,594 | G→T | 8.5% | V169V (GTC→GTA) | proC ← | pyrroline‑5‑carboxylate reductase, NAD(P)‑binding |
RA | 402,340 | G→T | 100% | V160V (GTG→GTT) | aroL → | shikimate kinase II |
RA | 405,970 | C→A | 42.6% | T124K (ACG→AAG) | mak → | manno(fructo)kinase |
RA | 406,002 | G→T | 12.6% | G135C (GGC→TGC) | mak → | manno(fructo)kinase |
RA | 406,075 | C→A | 100% | P159Q (CCG→CAG) | mak → | manno(fructo)kinase |
RA | 409,063 | A→T | 11.0% | L716* (TTG→TAG) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
RA | 411,027 | G→T | 100% | L61L (CTC→CTA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
RA | 421,799 | C→A | 94.6% | I69I (ATC→ATA) | tgt → | tRNA‑guanine transglycosylase |
RA | 425,143 | G→T | 90.8% | T61T (ACG→ACT) | secF → | SecYEG protein translocase auxillary subunit |
RA | 432,092 | G→A | 9.1% | K16K (AAG→AAA) | pgpA → | phosphatidylglycerophosphatase A |
RA | 432,762 | G→T | 5.3% | P277Q (CCG→CAG) | yajO ← | 2‑carboxybenzaldehyde reductase |
RA | 433,551 | G→T | 100% | S14Y (TCC→TAC) | yajO ← | 2‑carboxybenzaldehyde reductase |
RA | 433,738 | A→C | 51.4% | intergenic (‑147/+33) | yajO ← / ← dxs | 2‑carboxybenzaldehyde reductase/1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 434,663 | A→C | 100% | I324S (ATC→AGC) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 435,336 | G→T | 93.8% | Q100K (CAG→AAG) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 435,862 | A→T | 9.4% | T232T (ACT→ACA) | ispA ← | geranyltranstransferase |
RA | 437,371 | G→T | 11.5% | D123Y (GAT→TAT) | thiI → | tRNA s(4)U8 sulfurtransferase |
RA | 437,672 | T→A | 100% | V223E (GTG→GAG) | thiI → | tRNA s(4)U8 sulfurtransferase |
RA | 444,489 | G→A | 100% | R537C (CGT→TGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
RA | 446,369 | T→G | 90.3% | Q233P (CAG→CCG) | cyoA ← | cytochrome o ubiquinol oxidase subunit II |
RA | 450,290 | G→A | 100% | intergenic (+45/‑299) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 450,766 | G→T | 6.1% | A60S (GCG→TCG) | tig → | peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 456,298 | T→A | 100% | L652Q (CTG→CAG) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 456,588 | G→T | 100% | D749Y (GAC→TAC) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 458,644 | C→A | 14.3% | P425Q (CCG→CAG) | ppiD → | periplasmic folding chaperone, has an inactive PPIase domain |
RA | 458,681 | C→A | 14.5% | I437I (ATC→ATA) | ppiD → | periplasmic folding chaperone, has an inactive PPIase domain |
RA | 461,499 | G→T | 6.7% | R424S (CGC→AGC) | ybaE ← | putative ABC superfamily transporter periplasmic‑binding protein |
RA | 463,179 | C→A | 7.2% | I104I (ATC→ATA) | cof → | thiamine pyrimidine pyrophosphate hydrolase; HMP‑PP phosphatase |
RA | 463,263 | A→T | 10.4% | I132I (ATA→ATT) | cof → | thiamine pyrimidine pyrophosphate hydrolase; HMP‑PP phosphatase |
RA | 466,184 | G→T | 6.1% | M31I (ATG→ATT) | mdlB → | putative multidrug transporter subunit of ABC superfamily, ATP‑binding component |
RA | 474,138 | G→T | 94.2% | intergenic (‑65/+99) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
RA | 475,805 | C→A | 100% | A120A (GCG→GCT) | tomB ← | Hha toxicity attenuator; conjugation‑related protein |
RA | 477,267 | G→T | 5.4% | Q865K (CAG→AAG) | acrB ← | multidrug efflux system protein |
RA | 478,523 | G→T | 5.4% | A446E (GCG→GAG) | acrB ← | multidrug efflux system protein |
RA | 479,122 | G→T | 17.1% | F246L (TTC→TTA) | acrB ← | multidrug efflux system protein |
RA | 479,244 | C→A | 100% | A206S (GCC→TCC) | acrB ← | multidrug efflux system protein |
RA | 480,820 | C→T | 100% | D86N (GAC→AAC) | acrA ← | multidrug efflux system |
RA | 481,667 | G→A | 100% | A151T (GCG→ACG) | acrR → | transcriptional repressor |
RA | 486,494 | C→A | 5.8% | R53S (CGC→AGC) | ybaN → | DUF454 family inner membrane protein |
RA | 487,486 | G→T | 10.5% | intergenic (+67/‑62) | apt → / → dnaX | adenine phosphoribosyltransferase/DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
RA | 495,020 | T→A | 6.7% | E137V (GAA→GTA) | aes ← | acetyl esterase |
RA | 498,579 | G→T | 42.7% | A39E (GCG→GAG) | ybaL ← | inner membrane putative NAD(P)‑binding transporter |
RA | 500,178 | G→T | 45.3% | intergenic (‑26/‑192) | fsr ← / → ushA | putative fosmidomycin efflux system protein/bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
RA | 500,613 | G→T | 15.2% | G82C (GGT→TGT) | ushA → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
RA | 509,737 | G→A | 91.3% | E97K (GAG→AAG) | cueR → | copper‑responsive regulon transcriptional regulator |
RA | 520,254 | G→T | 9.9% | R513L (CGC→CTC) | rhsD → | Rhs family putative polymorphic toxin |
RA | 520,873 | A→T | 13.5% | A719A (GCA→GCT) | rhsD → | Rhs family putative polymorphic toxin |
RA | 521,011 | G→T | 21.1% | E765D (GAG→GAT) | rhsD → | Rhs family putative polymorphic toxin |
RA | 522,859 | T→G | 19.7% | S1381R (AGT→AGG) | rhsD → | Rhs family putative polymorphic toxin |
RA | 523,413 | G→T | 18.4% | pseudogene (6/708 nt) | rhsH → | pseudogene, Rhs familly protein |
RA | 524,334:1 | +T | 100% | pseudogene (239/491 nt) | ybbD → | pseudogene |
RA | 524,496 | T→G | 8.6% | pseudogene (401/491 nt) | ybbD → | pseudogene |
RA | 530,466 | C→A | 100% | F365L (TTC→TTA) | gcl → | glyoxylate carboligase |
RA | 531,158 | G→T | 6.0% | intergenic (+5/‑8) | gcl → / → hyi | glyoxylate carboligase/hydroxypyruvate isomerase |
RA | 531,226 | T→A | 8.7% | F21I (TTT→ATT) | hyi → | hydroxypyruvate isomerase |
RA | 538,153 | A→C | 14.3% | E270D (GAA→GAC) | glxK → | glycerate kinase II |
RA | 538,400 | G→T | 45.4% | E353* (GAA→TAA) | glxK → | glycerate kinase II |
RA | 542,200 | Δ1 bp | 100% | coding (65/1668 nt) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
RA | 544,142 | G→T | 36.2% | P110P (CCG→CCT) | ylbE → | NO‑induced DUF1116 protein |
RA | 545,542 | G→T | 6.1% | D154Y (GAC→TAC) | ylbF → | putative anaerobic allantoin catabolic oxamate carbamoyltransferase; DUF2877 family protein |
RA | 546,491 | G→T | 100% | V199V (GTG→GTT) | ybcF → | putative carbonate kinase |
RA | 549,397 | G→T | 100% | intergenic (‑1/+2) | lpxH ← / ← ppiB | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase/peptidyl‑prolyl cis‑trans isomerase B (rotamase B) |
RA | 551,499 | G→T | 6.0% | R171S (CGC→AGC) | ybcI ← | DUF457 family inner membrane protein |
RA | 557,592 | G→T | 93.1% | D814Y (GAC→TAC) | sfmD → | putative outer membrane export usher protein |
RA | 557,784 | G→T | 17.8% | intergenic (+28/‑8) | sfmD → / → sfmH | putative outer membrane export usher protein/FimA homolog |
RA | 566,710 | G→T | 46.9% | G121V (GGC→GTC) | ybcL → | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family |
RA | 571,745 | G→T | 43.2% | pseudogene (537/1040 nt) | nmpC ← | DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
RA | 572,129 | T→G | 40.1% | pseudogene (153/1040 nt) | nmpC ← | DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
RA | 576,653 | G→T | 46.4% | A122S (GCA→TCA) | nohD → | DLP12 prophage; DNA packaging protein |
RA | 576,998 | G→T | 100% | pseudogene (189/309 nt) | aaaD → | pseudogene; DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
RA | 580,102 | G→T | 41.2% | intergenic (+216/+34) | appY → / ← ompT | global transcriptional activator; DLP12 prophage/DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) |
RA | 580,558 | C→A | 11.2% | D178Y (GAT→TAT) | ompT ← | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) |
RA | 581,203 | A→T | 100% | intergenic (‑114/‑310) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)/tRNA‑OTHER |
RA | 583,341 | T→G | 94.8% | S33R (AGT→CGT) | ybcH ← | PRK09936 family protein |
RA | 596,812 | G→T | 10.2% | M881I (ATG→ATT) | cusA → | copper/silver efflux system, membrane component |
RA | 598,618 | G→T | 11.2% | E402* (GAA→TAA) | pheP → | phenylalanine transporter |
RA | 602,195 | C→A | 7.4% | T215T (ACG→ACT) | ybdK ← | weak gamma‑glutamyl:cysteine ligase |
RA | 603,207 | G→T | 15.4% | noncoding (18/59 nt) | sokE → | sRNA at remnant mokE/hokE locus |
RA | 604,929 | A→T | 16.7% | C203S (TGC→AGC) | entD ← | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
RA | 607,931 | G→A | 100% | S7F (TCC→TTC) | fepA ← | iron‑enterobactin outer membrane transporter |
RA | 614,511 | G→T | 9.9% | D268Y (GAT→TAT) | fepE → | regulator of length of O‑antigen component of lipopolysaccharide chains |
RA | 615,143 | C→A | 12.4% | T171T (ACG→ACT) | fepC ← | iron‑enterobactin transporter subunit |
RA | 619,048 | C→A | 93.4% | A307S (GCC→TCC) | fepB ← | iron‑enterobactin transporter subunit |
RA | 623,812 | G→T | 11.5% | V221V (GTG→GTT) | entB → | isochorismatase |
RA | 624,669 | G→T | 9.1% | T221T (ACG→ACT) | entA → | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase |
RA | 625,174 | G→T | 6.2% | intergenic (+5/‑176) | entH → / → cstA | enterobactin synthesis proofreading thioesterase/carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 625,364 | G→T | 94.9% | G5G (GGG→GGT) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 629,276 | A→T | 19.9% | K79* (AAA→TAA) | ybdL → | methionine aminotransferase, PLP‑dependent |
RA | 630,742 | C→A | 41.3% | E31* (GAA→TAA) | ybdM ← | Spo0J family protein, ParB‑like nuclease domain |
RA | 632,286 | C→A | 46.9% | E263D (GAG→GAT) | ybdO ← | putative DNA‑binding transcriptional regulator |
RA | 633,925 | G→A | 5.4% | I35I (ATC→ATT) | dsbG ← | thiol:disulfide interchange protein, periplasmic |
RA | 638,587 | G→T | 5.7% | E348D (GAG→GAT) | ybdR → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 639,231 | G→A | 100% | L65F (CTT→TTT) | rnk ← | regulator of nucleoside diphosphate kinase |
RA | 647,234 | C→T | 100% | E27K (GAA→AAA) | citC ← | [citrate [pro‑3S]‑lyase] ligase |
RA | 647,422 | G→T | 100% | intergenic (‑110/‑269) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 647,509 | T→C | 100% | intergenic (‑197/‑182) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 648,056 | C→A | 100% | F122L (TTC→TTA) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
RA | 652,442 | T→A | 15.0% | Y144N (TAC→AAC) | pagP → | phospholipid:lipid A palmitoyltransferase |
RA | 652,597 | C→T | 100% | intergenic (+24/‑151) | pagP → / → cspE | phospholipid:lipid A palmitoyltransferase/constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 652,865 | Δ1 bp | 94.6% | coding (118/210 nt) | cspE → | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 659,689 | G→T | 5.8% | R320S (CGC→AGC) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
RA | 662,108 | A→T | 100% | V522V (GTT→GTA) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 662,631 | C→A | 100% | R348L (CGC→CTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 667,348 | G→T | 100% | Q99K (CAG→AAG) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
RA | 667,397 | G→T | 40.4% | I82I (ATC→ATA) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
RA | 667,899 | C→A | 5.8% | D781Y (GAT→TAT) | leuS ← | leucyl‑tRNA synthetase |
RA | 672,142 | T→A | 89.2% | intergenic (‑139/‑25) | ybeQ ← / → ybeR | Sel1 family TPR‑like repeat protein/uncharacterized protein |
RA | 677,557 | C→A | 9.5% | K431N (AAG→AAT) | hscC ← | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription |
RA | 678,325 | G→T | 40.3% | G175G (GGC→GGA) | hscC ← | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription |
RA | 679,765 | G→T | 48.6% | S35Y (TCT→TAT) | rihA ← | ribonucleoside hydrolase 1 |
RA | 693,739 | G→T | 89.0% | H299N (CAC→AAC) | asnB ← | asparagine synthetase B |
RA | 702,869 | G→T | 13.0% | D441Y (GAT→TAT) | glnS → | glutamyl‑tRNA synthetase |
RA | 705,588 | C→A | 100% | intergenic (+16/+68) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
RA | 706,097 | A→C | 91.4% | T2T (ACT→ACG) *29G (TGA→GGA) |
fur ← uof ← |
ferric iron uptake regulon transcriptional repressor; autorepressor ryhB‑regulated fur leader peptide |
RA | 706,479 | C→A | 19.7% | R148L (CGT→CTT) | fldA ← | flavodoxin 1 |
RA | 709,827 | G→T | 43.7% | D272Y (GAT→TAT) | pgm → | phosphoglucomutase |
RA | 710,187 | A→T | 5.3% | S392C (AGT→TGT) | pgm → | phosphoglucomutase |
RA | 720,173 | G→T | 9.3% | A88E (GCG→GAG) | kdpC ← | potassium translocating ATPase, subunit C |
RA | 721,412 | T→A | 16.1% | N361Y (AAC→TAC) | kdpB ← | potassium translocating ATPase, subunit B |
RA | 723,859 | G→T | 8.6% | V110V (GTC→GTA) | kdpA ← | potassium translocating ATPase, subunit A |
RA | 724,813 | A→T | 100% | intergenic (+17/‑226) | ybfA → / → rhsC | DUF2517 family protein/Rhs family putative polymorphic toxin |
RA | 725,650 | G→T | 5.0% | P204P (CCG→CCT) | rhsC → | Rhs family putative polymorphic toxin |
RA | 729,456 | G→A | 92.6% | R75R (AGG→AGA) | ybfB → | putative membrane protein |
RA | 732,349 | G→T | 5.5% | pseudogene (69/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
RA | 732,416 | G→A | 5.4% | pseudogene (136/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
RA | 732,494 | G→T | 90.3% | pseudogene (214/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
RA | 732,752 | C→T | 16.0% | pseudogene (472/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
RA | 733,541 | G→A | 18.2% | intergenic (+124/‑7) | ybfL → / → ybfD | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein/H repeat‑associated putative transposase |
RA | 737,635 | G→T | 5.8% | G126G (GGC→GGA) | dtpD ← | dipeptide and tripeptide permease D |
RA | 738,124:1 | +T | 46.0% | intergenic (‑112/‑159) | dtpD ← / → ybgI | dipeptide and tripeptide permease D/NIF3 family metal‑binding protein |
RA | 743,797 | G→T | 9.4% | R214R (CGC→CGA) | ybgO ← | putative fimbrial protein |
RA | 745,420 | C→A | 14.9% | G736C (GGT→TGT) | ybgQ ← | putative outer membrane protein |
RA | 748,707 | A→T | 7.4% | I406I (ATT→ATA) | gltA ← | citrate synthase |
RA | 753,549 | G→T | 7.3% | Q135H (CAG→CAT) | sdhB → | succinate dehydrogenase, FeS subunit |
RA | 754,572 | G→T | 100% | E137D (GAG→GAT) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
RA | 759,000 | C→A | 100% | F177L (TTC→TTA) | sucC → | succinyl‑CoA synthetase, beta subunit |
RA | 761,420 | C→T | 12.0% | intergenic (‑89/‑20) | mngR ← / → mngA | Transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon/fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
RA | 767,694 | G→A | 50.0% | E261K (GAA→AAA) | cydA → | cytochrome d terminal oxidase, subunit I |
RA | 769,421 | C→A | 13.6% | I308I (ATC→ATA) | cydB → | cytochrome d terminal oxidase, subunit II |
RA | 772,664 | A→C | 9.6% | K289N (AAA→AAC) | tolA → | membrane anchored protein in TolA‑TolQ‑TolR complex |
RA | 776,049 | C→A | 17.6% | noncoding (40/76 nt) | lysT → | tRNA‑Lys |
RA | 777,175 | A→T | 11.7% | intergenic (+67/‑366) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
RA | 784,094 | G→T | 5.2% | A67E (GCG→GAG) | galM ← | aldose 1‑epimerase; type‑1 mutarotase |
RA | 784,482 | G→T | 13.0% | I318I (ATC→ATA) | galK ← | galactokinase |
RA | 788,902 | G→T | 94.5% | R115S (CGT→AGT) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
RA | 792,957 | C→A | 38.9% | V316V (GTC→GTA) | modC → | molybdate transporter subunit |
RA | 796,821 | G→T | 39.3% | A203S (GCT→TCT) | ybhH → | putative PrpF family isomerase |
RA | 800,488 | G→T | 91.6% | V510V (GTG→GTT) | ybhJ → | putative hydratase |
RA | 800,779 | G→T | 100% | E607D (GAG→GAT) | ybhJ → | putative hydratase |
RA | 809,212 | G→T | 5.6% | M77I (ATG→ATT) | uvrB → | excinulease of nucleotide excision repair, DNA damage recognition component |
RA | 815,168 | C→A | 15.1% | R140R (CGG→AGG) | moaE → | molybdopterin synthase, large subunit |
RA | 816,292 | A→T | 5.4% | H15L (CAC→CTC) | ybhM → | UPF0005 family inner membrane protein |
RA | 816,302 | G→T | 8.6% | R18S (AGG→AGT) | ybhM → | UPF0005 family inner membrane protein |
RA | 818,362 | G→T | 16.6% | G278G (GGC→GGA) | clsB ← | cardiolipin synthase 2 |
RA | 825,641 | G→T | 37.4% | A153A (GCC→GCA) | ybiH ← | DUF1956 domain‑containing tetR family putative transcriptional regulator |
RA | 828,374 | G→T | 100% | V11V (GTC→GTA) | ybiA ← | DUF1768 family protein |
RA | 829,009 | G→T | 10.0% | D162Y (GAT→TAT) | dinG → | ATP‑dependent DNA helicase |
RA | 832,445 | G→T | 94.8% | P213P (CCG→CCT) | ybiC → | putative dehydrogenase |
RA | 837,698 | G→A | 49.5% | intergenic (‑186/‑90) | mcbA ← / → rlmF | colanic acid mucoidy stimulation protein/23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
RA | 837,716 | G→T | 5.8% | intergenic (‑204/‑72) | mcbA ← / → rlmF | colanic acid mucoidy stimulation protein/23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
RA | 842,041 | C→A | 6.7% | E179* (GAA→TAA) | glnP ← | glutamine transporter subunit |
RA | 843,299 | C→A | 100% | W54C (TGG→TGT) | glnH ← | glutamine transporter subunit |
RA | 858,992 | C→T | 17.9% | intergenic (‑25/‑106) | ybiY ← / → fsaA | putative pyruvate formate lyase activating enzyme/fructose‑6‑phosphate aldolase 1 |
RA | 860,669 | G→T | 12.6% | I384I (ATC→ATA) | moeA ← | molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein |
RA | 862,017 | G→T | 11.5% | intergenic (‑197/‑7) | moeA ← / → iaaA | molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein/Isoaspartyl peptidase |
RA | 868,500 | A→T | 7.9% | S22S (TCA→TCT) | yliE → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 876,395 | G→T | 5.7% | M71I (ATG→ATT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 876,447 | G→A | 100% | D89N (GAT→AAT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 876,738 | G→T | 14.8% | D186Y (GAT→TAT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 879,085 | G→T | 100% | intergenic (‑241/‑44) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein |
RA | 890,555 | G→T | 43.5% | D37Y (GAT→TAT) | potG → | putrescine transporter subunit: ATP‑binding component of ABC superfamily |
RA | 898,457 | G→T | 52.7% | intergenic (‑13/+5) | artI ← / ← artP | arginine transporter subunit/arginine transporter subunit |
RA | 911,375 | G→T | 42.4% | F43L (TTC→TTA) | aqpZ ← | aquaporin Z |
RA | 912,614 | G→T | 40.9% | R229L (CGA→CTA) | ybjD → | putative OLD family ATP‑dependent endonuclease; DUF2813 family protein |
RA | 920,396 | G→T | 6.4% | A559A (GCG→GCT) | clpA → | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
RA | 925,160 | G→T | 93.4% | S420* (TCA→TAA) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 943,573 | G→T | 100% | A297S (GCC→TCC) | ycaM → | putative transporter |
RA | 954,765 | C→A | 46.2% | G166G (GGC→GGA) | aroA → | 5‑enolpyruvylshikimate‑3‑phosphate synthetase |
RA | 955,568 | A→T | 94.6% | intergenic (+17/‑152) | aroA → / → ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
RA | 968,415 | G→T | 100% | S148* (TCG→TAG) | ycbC ← | DUF218 superfamily protein |
RA | 992,767 | C→A | 6.1% | D68Y (GAT→TAT) | ssuE ← | NAD(P)H‑dependent FMN reductase |
RA | 997,673 | A→T | 8.6% | T137T (ACA→ACT) | elfG → | putative fimbrial‑like adhesin protein |
RA | 997,965 | G→T | 92.1% | D235Y (GAT→TAT) | elfG → | putative fimbrial‑like adhesin protein |
RA | 1,000,841 | G→T | 6.3% | A206A (GCG→GCT) | pyrD → | dihydro‑orotate oxidase, FMN‑linked |
RA | 1,003,597 | G→T | 8.7% | D100Y (GAC→TAC) | rlmL → | fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase, SAM‑dependent |
RA | 1,011,409 | C→A | 43.2% | *173L (TGA→TTA) | fabA ← | beta‑hydroxydecanoyl thioester dehydrase |
RA | 1,017,626 | G→T | 37.0% | R572S (CGT→AGT) | yccS ← | putative transporter, FUSC superfamily inner membrane protein, tandem domains |
RA | 1,024,387 | C→A | 12.4% | D347Y (GAT→TAT) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent |
RA | 1,024,703 | G→T | 92.7% | G241G (GGC→GGA) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent |
RA | 1,037,576 | G→T | 7.4% | G697G (GGC→GGA) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
RA | 1,038,316 | G→T | 6.3% | R451S (CGT→AGT) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
RA | 1,041,662 | G→T | 10.5% | F580L (TTC→TTA) | gfcD ← | putative O‑antigen capsule production periplasmic protein |
RA | 1,045,280 | G→T | 10.2% | intergenic (‑80/‑9) | gfcA ← / → insA | O‑antigen capsule production threonine‑rich inner membrane protein/IS1 repressor TnpA |
RA | 1,045,471 | G→T | 39.9% | M61I (ATG→ATT) | insA → | IS1 repressor TnpA |
RA | 1,048,928 | C→A | 91.5% | E903* (GAA→TAA) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,049,407 | G→T | 93.7% | T743K (ACG→AAG) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,055,132 | G→T | 7.3% | E141* (GAA→TAA) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
RA | 1,055,617 | A→T | 8.3% | A302A (GCA→GCT) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
RA | 1,063,736 | T→C | 45.9% | intergenic (+26/+231) | ymdF → / ← rutG | KGG family protein/pyrimidine permease |
RA | 1,068,091 | G→T | 44.0% | Q77K (CAG→AAG) | rutB ← | ureidoacrylate amidohydrolase |
RA | 1,073,863 | G→T | 20.8% | S159* (TCG→TAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
RA | 1,077,911 | A→C | 100% | K71N (AAA→AAC) | efeO → | inactive ferrous ion transporter EfeUOB |
RA | 1,079,951 | G→T | 7.4% | D374Y (GAT→TAT) | efeB → | deferrrochelatase, periplasmic |
RA | 1,080,620 | A→T | 5.8% | K58I (AAA→ATA) | phoH → | ATP‑binding protein; putative PhoH family P‑loop ATPase |
RA | 1,081,099 | G→T | 10.7% | D218Y (GAT→TAT) | phoH → | ATP‑binding protein; putative PhoH family P‑loop ATPase |
RA | 1,083,443 | G→T | 92.2% | S624* (TCG→TAG) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,084,103 | A→T | 94.8% | L404* (TTA→TAA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,087,360 | G→T | 47.8% | P129Q (CCG→CAG) | pgaA ← | biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein |
RA | 1,088,734 | G→T | 5.6% | V135F (GTT→TTT) | ycdT → | diguanylate cyclase, membrane‑anchored |
RA | 1,099,378 | A→C | 14.0% | intergenic (‑726/‑29) | csgD ← / → csgB | csgBAC operon transcriptional regulator/curlin nucleator protein, minor subunit in curli complex |
RA | 1,104,639 | C→A | 6.3% | intergenic (‑242/‑152) | opgC ← / → opgG | osmoregulated periplasmic glucan succinylation membrane protein/osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein |
RA | 1,105,607 | G→T | 31.7% | D273Y (GAC→TAC) | opgG → | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein |
RA | 1,116,964 | A→G | 100% | intergenic (‑21/+53) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydro‑orotase |
RA | 1,118,841 | A→T | 8.7% | intergenic (‑112/+22) | yceB ← / ← grxB | lipoprotein, DUF1439 family/glutaredoxin 2 (Grx2) |
RA | 1,132,098 | G→T | 43.0% | M123I (ATG→ATT) | flgI → | putative flagellar basal body protein |
RA | 1,139,402 | C→A | 5.8% | R141L (CGC→CTC) | rne ← | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
RA | 1,147,164 | G→A | 22.8% | D32N (GAC→AAC) | acpP → | acyl carrier protein (ACP) |
RA | 1,150,407 | G→T | 18.8% | P280P (CCG→CCT) | yceG → | septation protein, ampicillin sensitivity |
RA | 1,151,750 | G→T | 100% | R178L (CGC→CTC) | holB → | DNA polymerase III, delta prime subunit |
RA | 1,152,278 | G→T | 100% | E16* (GAA→TAA) | ycfH → | putative DNase |
RA | 1,153,110 | T→A | 15.5% | intergenic (+80/‑215) | ycfH → / → ptsG | putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component |
RA | 1,154,905 | G→T | 18.3% | F701L (TTC→TTA) | fhuE ← | ferric‑rhodotorulic acid outer membrane transporter |
RA | 1,156,310 | G→T | 7.9% | S233* (TCA→TAA) | fhuE ← | ferric‑rhodotorulic acid outer membrane transporter |
RA | 1,169,283 | T→A | 12.4% | A46A (GCA→GCT) | mfd ← | transcription‑repair coupling factor |
RA | 1,172,212 | C→A | 13.5% | S46S (TCC→TCA) | lolD → | outer membrane‑specific lipoprotein transporter subunit |
RA | 1,173,073 | T→A | 16.0% | F100I (TTC→ATC) | lolE → | lipoprotein‑releasing system transmembrane protein |
RA | 1,175,193 | A→T | 5.2% | E36V (GAA→GTA) | cobB → | deacetylase of acs and cheY, chemotaxis regulator |
RA | 1,191,676 | C→T | 85.6% | H366H (CAC→CAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,688 | C→T | 84.7% | T370T (ACC→ACT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,701 | T→C | 82.0% | L375L (TTA→CTA) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,703 | A→G | 82.0% | L375L (TTA→TTG) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,733 | C→T | 74.5% | N385N (AAC→AAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,736 | G→C | 74.5% | A386A (GCG→GCC) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,739 | A→G | 71.8% | K387K (AAA→AAG) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,748 | C→T | 67.5% | T390T (ACC→ACT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,760 | G→A | 50.0% | E394E (GAG→GAA) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,193,873 | G→T | 70.3% | intergenic (‑180/‑278) | ymfE ← / → lit | e14 prophage; putative inner membrane protein/e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
RA | 1,196,660 | G→T | 46.1% | intergenic (‑172/‑293) | xisE ← / → ymfI | e14 prophage; putative excisionase/e14 prophage; uncharacterized protein |
RA | 1,207,686 | T→A | 9.4% | intergenic (‑227/+473) | iraM ← / ← ycgX | RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein |
RA | 1,211,136 | T→C | 6.3% | intergenic (‑205/‑109) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
RA | 1,211,169 | C→A | 100% | intergenic (‑238/‑76) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
RA | 1,215,936 | G→T | 17.0% | pseudogene (880/2648 nt) | ycgH → | pseudogene; putative ATP‑binding component of a transport system |
RA | 1,219,533 | A→G | 100% | intergenic (+170/+202) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
RA | 1,220,996 | G→T | 100% | R181R (CGG→AGG) | minC ← | cell division inhibitor |
RA | 1,224,292 | G→A | 100% | D8N (GAT→AAT) | ycgN → | UPF0153 family cysteine cluster protein |
RA | 1,225,922 | C→T | 13.4% | intergenic (‑72/‑301) | hlyE ← / → umuD | hemolysin E/DNA polymerase V, subunit D |
RA | 1,226,292 | T→A | 100% | C24S (TGT→AGT) | umuD → | DNA polymerase V, subunit D |
RA | 1,228,033 | C→A | 11.8% | A152S (GCT→TCT) | dsbB ← | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
RA | 1,228,591 | G→T | 100% | intergenic (‑105/+41) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
RA | 1,240,865 | A→T | 14.0% | K84* (AAA→TAA) | ycgY → | uncharacterized protein |
RA | 1,246,435 | T→A | 16.5% | intergenic (‑141/‑87) | dhaK ← / → dhaR | dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit/dhaKLM operon transcription activator |
RA | 1,249,227 | G→T | 7.9% | R728S (CGT→AGT) | ycgV ← | putative adhesin |
RA | 1,264,442 | G→T | 7.9% | V274V (GTG→GTT) | kdsA → | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase |
RA | 1,268,535 | A→T | 41.1% | S191S (TCA→TCT) | chaC → | cation transport regulator |
RA | 1,276,723 | C→A | 17.3% | T468T (ACC→ACA) | narG → | nitrate reductase 1, alpha subunit |
RA | 1,277,786 | G→A | 100% | D823N (GAC→AAC) | narG → | nitrate reductase 1, alpha subunit |
RA | 1,282,421 | A→T | 10.9% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
RA | 1,284,124 | C→A | 22.0% | intergenic (‑44/+6) | purU ← / ← ychJ | formyltetrahydrofolate hydrolase/UPF0225 family protein |
RA | 1,285,956 | G→T | 12.6% | A87S (GCC→TCC) | rssB → | PcnB‑degradosome interaction factor; response regulator |
RA | 1,287,881 | C→A | 12.8% | intergenic (+60/+84) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
RA | 1,288,669 | A→T | 88.5% | intergenic (‑291/‑314) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
RA | 1,290,033 | G→T | 9.3% | pseudogene (416/567 nt) | insZ ← | pseudogene, transposase homolog |
RA | 1,296,729 | C→A | 7.0% | H431N (CAC→AAC) | oppA → | oligopeptide transporter subunit |
RA | 1,299,742 | C→A | 24.5% | A244A (GCC→GCA) | oppD → | oligopeptide transporter subunit |
RA | 1,313,458 | G→T | 6.7% | L196L (CTC→CTA) | trpC ← | fused indole‑3‑glycerolphosphate synthetase/N‑(5‑phosphoribosyl)anthranilate isomerase |
RA | 1,322,140 | T→A | 100% | T159S (ACG→TCG) | btuR ← | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
RA | 1,325,982 | G→T | 10.2% | T226T (ACG→ACT) | topA → | DNA topoisomerase I, omega subunit |
RA | 1,330,955 | G→T | 89.3% | D290Y (GAT→TAT) | acnA → | aconitate hydratase 1 |
RA | 1,332,486 | G→T | 46.6% | R800L (CGA→CTA) | acnA → | aconitate hydratase 1 |
RA | 1,333,690 | G→T | 9.3% | S35I (AGT→ATT) | pgpB → | phosphatidylglycerophosphatase B |
RA | 1,335,356 | A→T | 5.5% | H181L (CAT→CTT) | yciM → | envelope integrity maintenance protein; EnvC‑interacting protein |
RA | 1,337,533 | G→T | 100% | A18E (GCA→GAA) | osmB ← | lipoprotein |
RA | 1,340,820 | G→T | 47.7% | I60I (ATC→ATA) | gmr ← | cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability |
RA | 1,341,061 | C→A | 19.1% | Y3* (TAC→TAA) | ymiB → | uncharacterized protein |
RA | 1,344,412 | G→A | 10.3% | intergenic (‑48/+96) | yciW ← / ← fabI | putative oxidoreductase/enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent |
RA | 1,351,022 | G→T | 7.8% | R116S (CGT→AGT) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
RA | 1,358,855 | G→T | 7.1% | G123C (GGC→TGC) | puuB → | gamma‑glutamylputrescine oxidoreductase |
RA | 1,365,283 | G→T | 100% | E271* (GAG→TAG) | ycjM → | alpha amylase catalytic domain family protein |
RA | 1,372,069 | G→T | 45.9% | E327D (GAG→GAT) | ycjS → | putative NADH‑binding oxidoreductase |
JC JC | 1,376,043 | IS5 (–) +4 bp | 100% | pseudogene (10‑13/126 nt) | ycjV → | pseudogene; putative ATP‑binding component of a transport system |
RA | 1,377,394 | C→T | 100% | A275A (GCG→GCA) | ycjW ← | LacI family putative transcriptional repressor |
RA | 1,386,008 | G→T | 100% | Q35K (CAG→AAG) | ycjY ← | S9 homolog non‑peptidase family protein |
RA | 1,388,406 | G→T | 100% | R308L (CGC→CTC) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
RA | 1,388,474 | G→T | 43.1% | E331* (GAA→TAA) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
RA | 1,389,852 | G→T | 6.6% | R110S (CGC→AGC) | ynaI ← | mechanosensitive channel protein, very small conductance |
RA | 1,420,495 | G→A | 7.7% | intergenic (+156/‑216) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
RA | 1,420,579 | G→T | 8.1% | intergenic (+240/‑132) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
RA | 1,424,234 | C→A | 100% | S310* (TCA→TAA) | stfR → | Rac prophage; putative tail fiber protein |
JC JC | 1,428,894 | IS2 (–) +5 bp | 100% | intergenic (‑413/+317) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
RA | 1,429,517 | G→T | 14.5% | I120I (ATC→ATA) | uspF ← | stress‑induced protein, ATP‑binding protein |
RA | 1,430,751 | C→A | 44.2% | G134C (GGT→TGT) | ompN ← | outer membrane pore protein N, non‑specific |
RA | 1,430,873 | G→T | 9.6% | S93* (TCA→TAA) | ompN ← | outer membrane pore protein N, non‑specific |
RA | 1,439,518 | C→A | 100% | S737S (TCC→TCA) | ydbH → | putative membrane‑anchored protein, function unknown |
RA | 1,441,854 | C→A | 16.5% | R27S (CGT→AGT) | feaB → | phenylacetaldehyde dehydrogenase |
RA | 1,445,781 | G→T | 22.2% | intergenic (‑175/+73) | tynA ← / ← paaZ | tyramine oxidase, copper‑requiring/fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
RA | 1,448,131 | G→A | 19.4% | intergenic (‑232/‑53) | paaZ ← / → paaA | fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase/ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
RA | 1,448,418 | C→T | 16.4% | L79F (CTC→TTC) | paaA → | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
RA | 1,448,466 | C→A | 15.6% | Q95K (CAA→AAA) | paaA → | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
RA | 1,451,422 | A→T | 89.6% | T246S (ACG→TCG) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
RA | 1,454,724 | G→T | 94.5% | G472C (GGT→TGT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
RA | 1,457,725 | G→T | 9.5% | intergenic (+30/‑71) | paaK → / → paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
RA | 1,457,811 | A→T | 35.9% | T6S (ACT→TCT) | paaX → | transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
RA | 1,460,593 | C→G | 5.3% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,602 | T→C | 6.2% | pseudogene (954/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,695 | T→G | 6.2% | pseudogene (1047/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,896 | C→T | 5.8% | pseudogene (1248/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,986 | G→A | 6.6% | pseudogene (1338/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,477,570 | G→A | 16.9% | D85N (GAC→AAC) | hrpA → | putative ATP‑dependent helicase |
RA | 1,479,733 | G→T | 6.5% | D806Y (GAT→TAT) | hrpA → | putative ATP‑dependent helicase |
RA | 1,481,236 | G→T | 48.1% | intergenic (+16/‑256) | hrpA → / → ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding |
RA | 1,489,197 | C→T | 15.1% | K44K (AAG→AAA) | ydcI ← | putative DNA‑binding transcriptional regulator |
RA | 1,494,358 | C→A | 12.0% | D117Y (GAC→TAC) | ydcK ← | uncharacterized protein |
RA | 1,498,063 | C→T | 9.0% | I30I (ATC→ATT) | insQ → | IS609 transposase B |
RA | 1,499,199 | A→T | 53.4% | V380E (GTG→GAG) | ydcO ← | BenE family inner membrane putative transporter |
RA | 1,499,759 | G→T | 15.9% | V193V (GTC→GTA) | ydcO ← | BenE family inner membrane putative transporter |
RA | 1,503,014 | G→T | 42.6% | intergenic (+15/+77) | ydcP → / ← yncJ | putative peptidase/uncharacterized protein |
RA | 1,508,681 | C→A | 12.3% | F198L (TTC→TTA) | ydcU → | putative spermidine/putrescine transporter subunit |
RA | 1,514,858 | G→A | 8.3% | E114K (GAA→AAA) | mcbR → | colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
RA | 1,519,349 | T→A | 100% | K297* (AAA→TAA) | ansP ← | L‑asparagine transporter |
RA | 1,525,299 | A→T | 8.7% | pseudogene (457/738 nt) | yncI → | pseudogene |
RA | 1,529,506 | C→T | 14.3% | G204S (GGC→AGC) | yddE ← | PhzC‑PhzF family protein |
RA | 1,531,029 | G→T | 7.7% | R180S (CGC→AGC) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
RA | 1,531,040 | C→A | 14.2% | R176L (CGC→CTC) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
RA | 1,533,556 | G→T | 17.2% | H1098N (CAC→AAC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
RA | 1,534,409 | G→T | 5.6% | V813V (GTC→GTA) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
RA | 1,540,526 | C→A | 47.1% | intergenic (‑241/+19) | yddL ← / ← yddG | putative lipoprotein;putative membrane; Not classified; putative outer membrane porin protein/aromatic amino acid exporter |
RA | 1,548,144 | G→T | 100% | intergenic (‑49/+85) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
RA | 1,548,216 | A→T | 8.7% | intergenic (‑121/+13) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
RA | 1,551,406 | T→A | 5.9% | E297V (GAG→GTG) | ddpF ← | D,D‑dipeptide permease system, ATP‑binding component |
RA | 1,552,629 | C→A | 94.5% | D216Y (GAT→TAT) | ddpD ← | D,D‑dipeptide permease system, ATP‑binding component |
RA | 1,554,300 | G→T | 9.3% | S296* (TCA→TAA) | ddpB ← | D‑ala‑D‑ala transporter subunit |
RA | 1,554,588 | G→T | 46.0% | A200E (GCG→GAG) | ddpB ← | D‑ala‑D‑ala transporter subunit |
RA | 1,558,685 | G→T | 7.5% | R436S (CGC→AGC) | dosP ← | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator |
RA | 1,561,151 | C→A | 17.2% | D83Y (GAT→TAT) | dosC ← | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator |
RA | 1,563,276 | G→T | 100% | H491N (CAC→AAC) | gadC ← | glutamate:gamma‑aminobutyric acid antiporter |
RA | 1,565,497 | G→A | 100% | S269L (TCG→TTG) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
RA | 1,566,392 | A→T | 5.3% | intergenic (‑90/+272) | gadB ← / ← pqqL | glutamate decarboxylase B, PLP‑dependent/putative periplasmic M16 family zinc metalloendopeptidase |
RA | 1,570,428 | G→T | 5.2% | I483I (ATC→ATA) | yddB ← | putative TonB‑dependent outer membrane receptor |
RA | 1,570,826 | C→A | 5.6% | D351Y (GAC→TAC) | yddB ← | putative TonB‑dependent outer membrane receptor |
RA | 1,572,192 | G→T | 39.5% | L470I (CTT→ATT) | yddA ← | putative multidrug transporter subunit of ABC superfamily, membrane component/ATP‑binding component |
RA | 1,574,523 | T→A | 7.1% | L175F (TTA→TTT) | ydeM ← | putative YdeN‑specific sulfatase‑maturating enzyme |
RA | 1,575,339 | G→T | 100% | F481L (TTC→TTA) | ydeN ← | putative Ser‑type periplasmic non‑aryl sulfatase |
RA | 1,576,844 | G→A | 54.1% | intergenic (‑63/+339) | ydeN ← / ← ydeO | putative Ser‑type periplasmic non‑aryl sulfatase/UV‑inducible global regulator, EvgA‑, GadE‑dependent |
RA | 1,582,058 | A→C | 5.4% | W166G (TGG→GGG) | ydeR ← | putative fimbrial‑like adhesin protein |
RA | 1,586,871 | G→T | 26.7% | intergenic (‑172/+51) | hipB ← / ← yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
RA | 1,591,853 | C→A | 49.6% | pseudogene (392/5323 nt) | yneO ← | pseudogene, AidA homolog |
RA | 1,593,900 | G→T | 41.7% | N189K (AAC→AAA) | lsrK ← | autoinducer‑2 (AI‑2) kinase |
RA | 1,597,517 | T→G | 43.3% | L81* (TTA→TGA) | lsrC → | autoinducer 2 import system permease protein |
RA | 1,600,589 | T→G | 38.2% | L78R (CTG→CGG) | lsrF → | putative autoinducer‑2 (AI‑2) aldolase |
RA | 1,601,793 | C→A | 6.5% | S64Y (TCT→TAT) | tam → | trans‑aconitate methyltransferase |
RA | 1,603,440 | G→A | 100% | intergenic (‑161/+46) | yneE ← / ← uxaB | bestrophin family putative inner membrane protein/altronate oxidoreductase, NAD‑dependent |
RA | 1,604,655 | C→A | 48.1% | E95* (GAA→TAA) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
RA | 1,605,105 | C→T | 44.8% | intergenic (‑168/+59) | uxaB ← / ← yneF | altronate oxidoreductase, NAD‑dependent/putative membrane‑bound diguanylate cyclase |
RA | 1,610,766 | C→T | 16.8% | S249S (AGC→AGT) | yneK → | uncharacterized protein |
RA | 1,611,158 | G→T | 24.8% | intergenic (+23/‑127) | yneK → / → ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible |
RA | 1,614,089 | G→T | 6.4% | E87* (GAG→TAG) | marA → | multiple antibiotic resistance transcriptional regulator |
RA | 1,616,682 | T→G | 10.5% | L365R (CTG→CGG) | ydeE → | putative transporter |
RA | 1,620,961 | T→G | 100% | Q226P (CAA→CCA) | dcp ← | dipeptidyl carboxypeptidase II |
RA | 1,621,470 | G→A | 13.8% | N56N (AAC→AAT) | dcp ← | dipeptidyl carboxypeptidase II |
RA | 1,628,207 | G→A | 100% | G110E (GGA→GAA) | pinQ → | Qin prophage; putative site‑specific recombinase |
RA | 1,642,135 | C→T | 6.7% | intergenic (‑28/‑56) | dicC ← / → dicA | Qin prophage; DNA‑binding transcriptional regulator for DicB/Qin prophage; putative regulator for DicB |
RA | 1,646,412 | A→T | 20.7% | pseudogene (605/1158 nt) | intQ → | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
RA | 1,646,993 | C→T | 47.3% | intergenic (+28/+19) | intQ → / ← ydfJ | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related/pseudogene, MFS transporter family; interrupted by Qin prophage;Phage or Prophage Related; putative transport protein |
RA | 1,648,200 | G→T | 11.3% | T400K (ACG→AAG) | rspA ← | bifunctional D‑altronate/D‑mannonate dehydratase |
RA | 1,649,014 | C→A | 6.3% | D129Y (GAT→TAT) | rspA ← | bifunctional D‑altronate/D‑mannonate dehydratase |
RA | 1,653,563 | C→A | 5.0% | S413* (TCG→TAG) | ynfE → | putative selenate reductase, periplasmic |
RA | 1,656,349 | G→T | 17.6% | D513Y (GAT→TAT) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
RA | 1,656,621 | G→T | 9.4% | E603D (GAG→GAT) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
RA | 1,659,423 | C→T | 5.0% | intergenic (+46/‑149) | dmsD → / → clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
RA | 1,661,763 | C→A | 100% | P353P (CCG→CCT) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
RA | 1,667,443 | T→G | 26.6% | T106P (ACC→CCC) | mdtJ ← | multidrug efflux system transporter |
RA | 1,675,777 | C→A | 46.8% | S182* (TCG→TAG) | folM → | dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme |
RA | 1,680,642 | C→A | 8.9% | E68D (GAG→GAT) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
RA | 1,684,105 | C→A | 9.2% | intergenic (+97/‑4) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
RA | 1,689,180 | T→G | 100% | E383D (GAA→GAC) | uidA ← | beta‑D‑glucuronidase |
RA | 1,690,981 | G→T | 15.0% | A110E (GCG→GAG) | uidR ← | transcriptional repressor |
RA | 1,692,221 | T→A | 5.3% | E26V (GAA→GTA) | hdhA ← | 7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent |
RA | 1,692,573 | C→A | 89.2% | D289Y (GAT→TAT) | malI ← | transcriptional repressor of Mal regulon |
RA | 1,696,612 | A→T | 100% | E41D (GAA→GAT) | add → | adenosine deaminase |
RA | 1,697,123 | C→A | 10.3% | R212S (CGT→AGT) | add → | adenosine deaminase |
RA | 1,698,343 | C→A | 53.2% | D75Y (GAT→TAT) | ydgJ ← | putative oxidoreductase |
RA | 1,699,862 | T→A | 88.5% | L119* (TTG→TAG) | ydgK → | DUF2569 family inner membrane protein |
RA | 1,701,260 | T→A | 16.2% | S29T (TCC→ACC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,702,966 | T→A | 6.5% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,015 | G→C | 5.8% | E614Q (GAA→CAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,706,450 | C→T | 14.1% | intergenic (+35/‑576) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
RA | 1,706,777 | C→A | 8.2% | intergenic (+362/‑249) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
RA | 1,706,994 | C→T | 12.1% | intergenic (+579/‑32) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
RA | 1,711,397 | C→T | 100% | R28Q (CGA→CAA) | tyrS ← | tyrosyl‑tRNA synthetase |
RA | 1,718,636 | G→T | 45.3% | L93I (CTT→ATT) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
RA | 1,721,644 | C→A | 40.5% | N243K (AAC→AAA) | nemA → | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme |
RA | 1,723,809 | G→T | 88.5% | E156* (GAA→TAA) | lhr → | putative ATP‑dependent helicase |
RA | 1,725,272 | G→T | 19.3% | A643A (GCG→GCT) | lhr → | putative ATP‑dependent helicase |
RA | 1,732,758 | G→T | 47.4% | D220Y (GAC→TAC) | purR → | transcriptional repressor, hypoxanthine‑binding |
RA | 1,734,392 | A→T | 11.6% | L75F (TTA→TTT) | ydhC → | putative arabinose efflux transporter |
RA | 1,738,129 | C→A | 5.2% | P139Q (CCG→CAG) | mdtK → | multidrug efflux system transporter |
RA | 1,747,034 | C→A | 14.7% | D352Y (GAT→TAT) | ydhV ← | putative oxidoreductase subunit |
RA | 1,751,673 | T→G | 45.1% | intergenic (+306/‑5) | pykF → / → lpp | pyruvate kinase I/murein lipoprotein |
RA | 1,752,893 | T→A | 5.8% | P30P (CCA→CCT) | ldtE ← | murein L,D‑transpeptidase |
RA | 1,753,293 | G→T | 48.9% | V85V (GTC→GTA) | sufE ← | sulfur acceptor protein |
RA | 1,754,950 | T→A | 93.8% | I367F (ATT→TTT) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
RA | 1,755,736 | C→A | 12.6% | G105* (GGA→TGA) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
RA | 1,757,647 | G→T | 5.4% | T207K (ACG→AAG) | sufB ← | component of SufBCD Fe‑S cluster assembly scaffold |
RA | 1,764,150 | G→T | 93.2% | D274Y (GAT→TAT) | ydiK → | UPF0118 family inner membrane protein |
RA | 1,764,518 | T→A | 6.0% | intergenic (+75/‑111) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
RA | 1,767,963 | C→A | 15.4% | P399T (CCT→ACT) | ydiN → | MFS transporter superfamily protein |
RA | 1,768,689 | C→A | 8.7% | S215* (TCA→TAA) | ydiB → | quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding |
RA | 1,769,440 | C→A | 46.7% | A166A (GCC→GCA) | aroD → | 3‑dehydroquinate dehydratase |
RA | 1,770,281 | T→A | 100% | D146E (GAT→GAA) | ydiF → | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
RA | 1,774,858 | C→T | 45.0% | Y67Y (TAC→TAT) | ydiR → | putative electron transfer flavoprotein, FAD‑binding subunit |
RA | 1,775,744 | C→A | 18.3% | V31V (GTC→GTA) | ydiS → | putative oxidoreductase |
RA | 1,777,451 | C→A | 93.5% | A55E (GCG→GAG) | fadK → | short chain acyl‑CoA synthetase, anaerobic |
RA | 1,778,803 | T→C | 9.4% | Y506H (TAT→CAT) | fadK → | short chain acyl‑CoA synthetase, anaerobic |
RA | 1,783,091 | G→T | 7.3% | E134* (GAG→TAG) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
RA | 1,798,234 | G→T | 45.1% | pseudogene (460/1476 nt) | arpB → | pseudogene, ankyrin repeats |
RA | 1,800,416 | C→T | 14.6% | intergenic (‑76/‑211) | ydiY ← / → pfkB | acid‑inducible putative outer membrane protein/6‑phosphofructokinase II |
RA | 1,802,047 | G→A | 100% | intergenic (+100/‑6) | ydiZ → / → yniA | uncharacterized protein/fructosamine kinase family protein |
RA | 1,803,109 | C→T | 92.7% | A128T (GCC→ACC) | yniB ← | putative inner membrane protein |
RA | 1,809,895 | A→T | 5.3% | Y591F (TAC→TTC) | katE → | catalase HPII, heme d‑containing |
RA | 1,810,619 | G→T | 38.7% | intergenic (+234/+24) | katE → / ← chbG | catalase HPII, heme d‑containing/chito‑oligosaccharide deacetylase |
RA | 1,812,514 | C→A | 5.9% | D82Y (GAT→TAT) | chbF ← | phospho‑chitobiase; general 6‑phospho‑beta‑glucosidase activity |
RA | 1,819,917 | C→T | 8.7% | intergenic (‑35/+295) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
RA | 1,820,020 | C→A | 43.9% | intergenic (‑138/+192) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
RA | 1,821,696 | A→T | 90.7% | L274Q (CTG→CAG) | astB ← | succinylarginine dihydrolase |
RA | 1,822,975 | C→A | 53.8% | A339A (GCG→GCT) | astD ← | succinylglutamic semialdehyde dehydrogenase |
RA | 1,825,763 | C→A | 91.8% | A159A (GCG→GCT) | astC ← | succinylornithine transaminase, PLP‑dependent |
RA | 1,828,672 | A→C | 7.6% | E100D (GAA→GAC) | ydjY → | putative ferrodoxin‑like lipoprotein |
RA | 1,832,413 | C→A | 100% | L315L (CTC→CTA) | ynjC → | inner membrane putative ABC superfamily transporter permease |
RA | 1,833,730 | C→A | 100% | R3S (CGT→AGT) | ynjE → | molybdopterin synthase sulfurtransferase |
RA | 1,849,550 | C→A | 37.2% | G227C (GGC→TGC) | ydjG ← | alpha‑Keto reductase, NADH‑dependent; can use methylglyoxal as substrate |
RA | 1,850,880 | C→A | 21.9% | V102V (GTG→GTT) | ydjH ← | putative kinase |
RA | 1,860,183 | G→T | 6.5% | R183S (CGC→AGC) | mipA ← | scaffolding protein for murein synthesizing machinery |
RA | 1,862,142 | C→A | 46.9% | I326I (ATC→ATA) | yeaG → | protein kinase, endogenous substrate unidentified; autokinase |
RA | 1,864,752 | C→A | 47.6% | S37R (AGC→AGA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,865,000 | C→A | 7.7% | P120Q (CCA→CAA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,865,422 | C→A | 100% | R261R (CGA→AGA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,868,749 | A→C | 14.1% | E47D (GAA→GAC) | yeaL → | UPF0756 family putative inner membrane protein |
RA | 1,870,743 | C→A | 6.8% | H272N (CAT→AAT) | yeaN → | putative transporter |
RA | 1,872,054 | A→T | 5.5% | E28V (GAG→GTG) | yeaP → | diguanylate cyclase |
RA | 1,872,520 | G→T | 95.0% | P183P (CCG→CCT) | yeaP → | diguanylate cyclase |
RA | 1,873,569 | C→A | 16.0% | intergenic (‑57/+91) | yeaQ ← / ← yoaG | UPF0410 family protein/uncharacterized protein |
RA | 1,874,423 | C→A | 52.9% | L198F (TTG→TTT) | leuE ← | leucine efflux protein |
RA | 1,875,096 | G→T | 9.5% | intergenic (‑80/+47) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
RA | 1,879,386 | C→A | 43.9% | I155I (ATC→ATA) | yeaW → | putative YeaWX dioxygenase alpha subunit; 2Fe‑2S cluster |
RA | 1,880,857 | G→T | 8.8% | M252I (ATG→ATT) | yeaX → | putative YeaWX dioxygenase beta subunit, reductase component |
RA | 1,885,243 | C→A | 10.0% | T94T (ACG→ACT) | tsaB ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD |
RA | 1,886,725 | G→T | 10.5% | I256I (ATC→ATA) | yoaA ← | putative ATP‑dependent helicase, DinG family |
RA | 1,894,208 | A→T | 6.3% | K509* (AAA→TAA) | yoaD → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production |
RA | 1,895,069 | C→T | 13.5% | G258G (GGG→GGA) | yoaE ← | putative membrane protein/conserved protein |
RA | 1,909,342 | T→A | 100% | E150D (GAA→GAT) | proQ ← | RNA chaperone, putative ProP translation regulator |
RA | 1,927,856 | G→T | 5.8% | L336I (CTC→ATC) | edd ← | 6‑phosphogluconate dehydratase |
RA | 1,937,083 | A→T | 41.8% | T55T (ACA→ACT) | znuC → | zinc transporter subunit: ATP‑binding component of ABC superfamily |
RA | 1,940,498 | G→T | 9.9% | intergenic (‑61/‑10) | yobI ← / → yebB | uncharacterized protein/DUF830 family protein |
RA | 1,941,921 | A→T | 14.1% | V163E (GTG→GAG) | yebC ← | UPF0082 family protein |
RA | 1,943,414 | C→A | 17.2% | D456Y (GAT→TAT) | aspS ← | aspartyl‑tRNA synthetase |
RA | 1,944,177 | C→A | 100% | L201L (CTG→CTT) | aspS ← | aspartyl‑tRNA synthetase |
RA | 1,946,006 | G→T | 43.0% | D119Y (GAT→TAT) | yecE → | UPF0759 family protein |
RA | 1,953,876 | C→A | 7.0% | P76P (CCG→CCT) | yecM ← | putative metal‑binding enzyme |
RA | 1,956,286 | G→T | 5.9% | D20Y (GAT→TAT) | yecT → | uncharacterized protein |
RA | 1,957,975 | C→A | 13.5% | A445S (GCT→TCT) | flhA ← | putative flagellar export pore protein |
RA | 1,959,915 | C→A | 93.7% | P178P (CCG→CCT) | flhB ← | flagellin export apparatus, substrate specificity protein |
RA | 1,962,923 | C→A | 8.0% | M233I (ATG→ATT) | cheR ← | chemotaxis regulator, protein‑glutamate methyltransferase |
RA | 1,969,291 | G→T | 100% | I97I (ATC→ATA) | cheA ← | fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
RA | 1,975,265 | C→A | 17.0% | D202Y (GAT→TAT) | otsB ← | trehalose‑6‑phosphate phosphatase, biosynthetic |
RA | 1,980,472 | C→A | 46.2% | L23I (CTC→ATC) | ftnB → | ferritin B, putative ferrous iron reservoir |
RA | 1,984,478 | G→T | 44.9% | P208Q (CCG→CAG) | yecA ← | UPF0149 family protein |
RA | 1,984,987 | C→A | 91.2% | T38T (ACG→ACT) | yecA ← | UPF0149 family protein |
RA | 1,985,366 | G→T | 16.1% | noncoding (17/87 nt) | leuZ ← | tRNA‑Leu |
RA | 1,986,289 | T→A | 100% | N4Y (AAT→TAT) | pgsA ← | phosphatidylglycerophosphate synthetase |
RA | 1,991,843 | G→A | 15.4% | L40F (CTC→TTC) | yecS ← | ABC family putative inner membrane permease |
RA | 1,993,543 | G→T | 5.4% | V108V (GTC→GTA) | fliY ← | cystine transporter subunit |
RA | 1,996,506 | G→T | 8.8% | T194T (ACC→ACA) | fliC ← | flagellar filament structural protein (flagellin) |
RA | 1,997,314 | G→T | 100% | intergenic (‑227/‑39) | fliC ← / → fliD | flagellar filament structural protein (flagellin)/flagellar filament capping protein |
RA | 1,999,632 | G→T | 93.4% | intergenic (+73/‑5) | fliT → / → amyA | putative flagellar synthesis and assembly chaperone/cytoplasmic alpha‑amylase |
RA | 2,000,765 | G→T | 7.7% | D377Y (GAT→TAT) | amyA → | cytoplasmic alpha‑amylase |
RA | 2,004,533 | G→T | 5.8% | T151T (ACG→ACT) | yedL → | putative acyl transferase |
RA | 2,005,913 | T→A | 44.4% | intergenic (‑81/‑70) | yedN ← / → intG | pseudogene, IpaH/YopM family/pseudogene, phage integrase family |
RA | 2,015,451 | T→A | 50.7% | G34G (GGT→GGA) | fliP → | flagellar biosynthesis protein |
RA | 2,018,422 | T→A | 44.6% | intergenic (‑118/‑45) | dsrB ← / → yodD | uncharacterized protein/uncharacterized protein |
RA | 2,020,166 | C→A | 100% | D445Y (GAC→TAC) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
RA | 2,021,794 | C→A | 7.1% | V20F (GTC→TTC) | yodC ← | uncharacterized protein |
RA | 2,023,279 | C→A | 40.5% | T87K (ACG→AAG) | yedA → | amino acid exporter for phenylalanine, threonine |
RA | 2,029,767 | T→A | 11.5% | V151D (GTT→GAT) | hchA → | glyoxalase III and Hsp31 molecular chaperone |
RA | 2,034,861 | G→T | 13.3% | A2A (GCG→GCT) | zinT → | zinc and cadmium binding protein, periplasmic |
RA | 2,035,090 | C→A | 91.2% | Q79K (CAG→AAG) | zinT → | zinc and cadmium binding protein, periplasmic |
RA | 2,039,694 | C→T | 14.1% | R426C (CGC→TGC) | yeeJ → | putative adhesin |
RA | 2,046,600 | G→T | 5.7% | pseudogene (210/1053 nt) | yeeL ← | pseudogene, glycosyltransferase homology |
RA | 2,060,661 | T→A | 33.4% | N48Y (AAC→TAC) | insH1 ← | IS5 transposase and trans‑activator |
RA | 2,074,680 | A→T | 100% | W22R (TGG→AGG) | sbmC ← | DNA gyrase inhibitor |
RA | 2,075,255 | T→A | 17.3% | V258V (GTA→GTT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6b) |
RA | 2,077,212 | A→T | 91.4% | N326Y (AAT→TAT) | sbcB → | exodeoxyribonuclease I; exonuclease I |
RA | 2,082,619 | C→T | 48.7% | intergenic (‑10/+73) | yeeZ ← / ← yoeB | putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system |
RA | 2,086,004 | C→A | 5.1% | A42A (GCC→GCA) | hisC → | histidinol‑phosphate aminotransferase |
RA | 2,098,995 | C→A | 100% | G182* (GGA→TGA) | wbbI ← | d‑Galf:alpha‑d‑Glc beta‑1,6‑galactofuranosyltransferase |
RA | 2,101,912 | T→G | 8.7% | E385A (GAG→GCG) | wzxB ← | putative polisoprenol‑linked O‑antigen transporter |
RA | 2,102,786 | C→T | 35.9% | V94I (GTT→ATT) | wzxB ← | putative polisoprenol‑linked O‑antigen transporter |
RA | 2,108,199 | C→T | 14.5% | M393I (ATG→ATA) | wcaM ← | colanic acid biosynthesis protein |
RA | 2,108,219:1 | +A | 100% | coding (1159/1395 nt) | wcaM ← | colanic acid biosynthesis protein |
RA | 2,110,346 | G→A | 93.1% | T88I (ACC→ATC) | wcaL ← | putative glycosyl transferase |
RA | 2,114,414 | C→A | 13.5% | V208F (GTC→TTC) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
RA | 2,114,911 | A→T | 100% | L42Q (CTG→CAG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
RA | 2,122,266 | G→T | 5.1% | S35* (TCG→TAG) | wcaF ← | putative acyl transferase |
RA | 2,124,797 | C→A | 17.5% | R252L (CGT→CTT) | wcaC ← | putative glycosyl transferase |
RA | 2,130,684 | G→T | 45.8% | S14* (TCA→TAA) | wza ← | colanic acid export protein; outer membrane auxillary lipoprotein |
RA | 2,130,777 | T→A | 8.2% | intergenic (‑53/‑606) | wza ← / → yegH | colanic acid export protein; outer membrane auxillary lipoprotein/inner membrane protein |
RA | 2,135,016 | C→A | 12.5% | V26V (GTG→GTT) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
RA | 2,137,659 | C→A | 38.2% | R305R (CGG→AGG) | yegE → | putative diguanylate cyclase |
RA | 2,137,749 | C→A | 11.2% | L335I (CTC→ATC) | yegE → | putative diguanylate cyclase |
RA | 2,139,450 | G→T | 38.3% | E902* (GAG→TAG) | yegE → | putative diguanylate cyclase |
RA | 2,139,910 | G→T | 100% | R1055L (CGA→CTA) | yegE → | putative diguanylate cyclase |
RA | 2,144,474 | C→A | 100% | intergenic (‑8/‑192) | yegI ← / → yegJ | protein kinase‑related putative non‑specific DNA‑binding protein/uncharacterized protein |
RA | 2,145,887 | G→T | 13.3% | Q23K (CAG→AAG) | yegK ← | ser/thr phosphatase‑related protein |
RA | 2,146,030 | T→A | 16.9% | S194C (AGT→TGT) | yegL ← | VMA domain protein |
RA | 2,149,603 | A→T | 100% | E287V (GAA→GTA) | mdtB → | multidrug efflux system, subunit B |
RA | 2,152,444 | C→A | 7.8% | A193E (GCG→GAG) | mdtC → | multidrug efflux system, subunit C |
RA | 2,155,768 | T→C | 47.5% | I275T (ATT→ACT) | mdtD → | putative arabinose efflux transporter |
RA | 2,162,105 | T→A | 19.0% | intergenic (‑318/‑88) | yegR ← / → yegS | uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent |
RA | 2,163,087 | C→A | 5.8% | R299S (CGT→AGT) | yegS → | phosphatidylglycerol kinase, metal‑dependent |
RA | 2,168,795 | C→A | 93.6% | D336Y (GAT→TAT) | gatZ ← | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
RA | 2,170,713 | C→A | 8.1% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,172,567 | A→T | 5.3% | T90S (ACT→TCT) | yegT → | nucleoside transporter, low affinity |
RA | 2,176,158 | C→T | 9.2% | A35T (GCC→ACC) | yegW ← | putative DNA‑binding transcriptional regulator |
RA | 2,177,743 | C→A | 35.9% | D85Y (GAT→TAT) | thiD ← | bifunctional hydroxy‑methylpyrimidine kinase/ hydroxy‑phosphomethylpyrimidine kinase |
RA | 2,178,987 | C→A | 14.1% | intergenic (‑207/+16) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
RA | 2,179,205 | G→T | 100% | A24E (GCG→GAG) | rcnR ← | transcriptional repressor of rcnA |
RA | 2,181,645 | A→G | 100% | N83N (AAT→AAC) | yehA ← | putative fimbrial‑like adhesin protein |
RA | 2,191,496 | C→A | 5.7% | pseudogene (1544/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
RA | 2,192,748 | T→A | 19.9% | pseudogene (2796/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
RA | 2,194,695 | T→A | 100% | L313Q (CTA→CAA) | yehI → | DUF4132 domain‑containing protein |
RA | 2,195,449 | A→T | 100% | E564D (GAA→GAT) | yehI → | DUF4132 domain‑containing protein |
RA | 2,197,430 | G→T | 7.2% | intergenic (+40/‑21) | yehI → / → yehK | DUF4132 domain‑containing protein/uncharacterized protein |
RA | 2,204,432 | G→T | 17.5% | pseudogene (1854/2001 nt) | yehQ → | pseudogene |
RA | 2,209,162 | C→A | 94.3% | I9I (ATC→ATA) | yohO → | putative membrane protein |
RA | 2,216,296 | C→A | 100% | I211I (ATC→ATA) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
RA | 2,221,550 | G→T | 9.3% | pseudogene (539/1287 nt) | mdtQ ← | pseudogene; putative channel/filament proteins |
RA | 2,223,247 | C→T | 92.5% | W206* (TGG→TGA) | dusC ← | tRNA‑dihydrouridine synthase C |
RA | 2,225,190 | C→T | 94.3% | G231G (GGC→GGT) | yohK → | LrgB family inner membrane protein |
RA | 2,225,529 | G→T | 5.1% | S69S (TCG→TCT) | cdd → | cytidine/deoxycytidine deaminase |
RA | 2,232,373 | C→A | 8.3% | A132A (GCG→GCT) | mglA ← | fused methyl‑galactoside transporter subunits of ABC superfamily: ATP‑binding components |
RA | 2,233,243 | T→G | 5.6% | K195N (AAA→AAC) | mglB ← | methyl‑galactoside transporter subunit |
RA | 2,234,532 | C→A | 7.8% | D206Y (GAT→TAT) | galS ← | galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
RA | 2,237,098 | G→T | 100% | H12N (CAT→AAT) | folE ← | GTP cyclohydrolase I |
RA | 2,241,222 | T→G | 5.7% | I264L (ATT→CTT) | lysP ← | lysine transporter |
RA | 2,244,455 | C→A | 15.3% | T46K (ACG→AAG) | nfo → | endonuclease IV with intrinsic 3'‑5' exonuclease activity |
RA | 2,246,428 | C→A | 17.0% | T399T (ACG→ACT) | nupX ← | nucleoside permease |
RA | 2,248,390 | G→T | 12.9% | F92L (TTC→TTA) | rihB ← | ribonucleoside hydrolase 2 |
RA | 2,256,045 | A→T | 7.0% | I310I (ATT→ATA) | fruB ← | fused fructose‑specific PTS enzymes: IIA component/HPr component |
RA | 2,263,137 | C→A | 94.3% | intergenic (+91/‑321) | lpxT → / → mepS | lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase/murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein |
RA | 2,264,143 | G→A | 100% | intergenic (+119/‑62) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 2,281,560 | T→A | 48.6% | pseudogene (834/2525 nt) | yejO ← | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
RA | 2,287,829 | C→A | 94.0% | S185S (TCG→TCT) | ccmF ← | heme lyase, CcmF subunit |
RA | 2,289,043 | C→A | 92.9% | W8L (TGG→TTG) | ccmD ← | cytochrome c biogenesis protein |
RA | 2,289,374 | C→A | 100% | V142V (GTG→GTT) | ccmC ← | heme exporter subunit |
RA | 2,291,194 | C→A | 40.4% | C182F (TGC→TTC) | napC ← | quinol dehydrogenase, electron source for NapAB |
RA | 2,298,128 | C→T | 8.2% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,303,070 | T→G | 100% | Q272P (CAG→CCG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
RA | 2,303,607 | A→C | 47.7% | L93R (CTG→CGG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
RA | 2,305,116 | C→A | 100% | intergenic (‑103/+9) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
RA | 2,305,135 | T→C | 100% | Y365C (TAC→TGC) | ompC ← | outer membrane porin protein C |
RA | 2,310,213 | G→T | 47.7% | K186N (AAG→AAT) | rcsB → | response regulator in two‑component regulatory system with RcsC and YojN |
RA | 2,310,604 | C→A | 14.9% | G918C (GGT→TGT) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
RA | 2,311,008 | T→A | 16.9% | H783L (CAC→CTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
RA | 2,313,511 | T→A | 43.9% | intergenic (‑156/‑11) | rcsC ← / → atoS | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN/sensory histidine kinase in two‑component regulatory system with AtoC |
RA | 2,318,825 | G→T | 5.6% | V197V (GTG→GTT) | atoE → | short chain fatty acid transporter |
RA | 2,321,041 | G→T | 15.9% | F194L (TTC→TTA) | yfaP ← | DUF2135 family protein, putative host defense protein |
RA | 2,329,729 | G→T | 18.9% | A132E (GCG→GAG) | yfaA ← | DUF2138 family protein, putative host defense protein |
RA | 2,330,502 | C→A | 92.8% | D800Y (GAT→TAT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
RA | 2,342,897 | C→A | 6.2% | D19Y (GAC→TAC) | inaA ← | acid‑inducible Kdo/WaaP family putative kinase |
RA | 2,348,894 | T→A | 92.3% | V384E (GTG→GAG) | glpB → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), membrane anchor subunit |
RA | 2,352,573 | C→A | 100% | P353P (CCG→CCT) | rhmT ← | putative L‑rhamnonate transporter |
RA | 2,359,673 | G→T | 100% | M89I (ATG→ATT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
RA | 2,362,338 | T→A | 100% | L274Q (CTG→CAG) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
RA | 2,364,394 | C→A | 46.8% | S3* (TCG→TAG) | arnT → | 4‑amino‑4‑deoxy‑L‑arabinose transferase |
RA | 2,366,555 | T→G | 17.8% | F62C (TTT→TGT) | arnF → | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
RA | 2,370,361:1 | +G | 100% | coding (711/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,370,987 | C→A | 100% | E29* (GAA→TAA) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,372,282 | C→A | 10.1% | D153Y (GAC→TAC) | menD ← | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase; SEPHCHC synthase |
RA | 2,373,129 | C→A | 18.8% | D332Y (GAT→TAT) | menF ← | isochorismate synthase 2 |
RA | 2,376,959 | C→T | 8.5% | N256N (AAC→AAT) | elaD → | protease, capable of cleaving an AMC‑ubiquitin model substrate |
RA | 2,378,963 | A→T | 14.2% | L80* (TTG→TAG) | yfbK ← | Von Willebrand factor domain putative lipoprotein |
RA | 2,380,078 | C→T | 92.2% | S247F (TCT→TTT) | yfbL → | putative peptidase |
RA | 2,380,320 | C→A | 7.7% | intergenic (+10/‑93) | yfbL → / → yfbM | putative peptidase/DUF1877 family protein |
RA | 2,383,897 | C→A | 100% | R363L (CGC→CTC) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
RA | 2,392,190 | G→T | 43.2% | V485V (GTC→GTA) | nuoG ← | NADH:ubiquinone oxidoreductase, chain G |
RA | 2,395,151 | C→A | 15.0% | T127T (ACG→ACT) | nuoE ← | NADH:ubiquinone oxidoreductase, chain E |
RA | 2,399,210 | G→T | 100% | S304* (TCA→TAA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
RA | 2,400,858 | C→A | 7.0% | intergenic (‑738/‑182) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
RA | 2,405,946 | T→G | 100% | Q43P (CAG→CCG) | yfbU ← | UPF0304 family protein |
RA | 2,412,205 | C→A | 92.8% | D151Y (GAT→TAT) | yfcD ← | putative NUDIX hydrolase |
RA | 2,416,101 | C→A | 100% | intergenic (+21/+27) | yfcH → / ← yfcI | putative NAD‑dependent nucleotide‑sugar epimerase/transposase_31 family protein |
RA | 2,417,358 | C→A | 17.1% | E211* (GAA→TAA) | hisP ← | histidine/lysine/arginine/ornithine transporter subunit |
RA | 2,422,841 | C→A | 100% | D293Y (GAT→TAT) | purF ← | amidophosphoribosyltransferase |
RA | 2,423,034 | G→T | 45.7% | G228G (GGC→GGA) | purF ← | amidophosphoribosyltransferase |
RA | 2,424,074 | C→T | 100% | D57N (GAC→AAC) | cvpA ← | colicin V production membrane protein |
RA | 2,424,254 | G→T | 10.4% | intergenic (‑12/+247) | cvpA ← / ← dedD | colicin V production membrane protein/membrane‑anchored periplasmic protein involved in septation |
RA | 2,425,587 | C→A | 41.0% | D279Y (GAC→TAC) | folC ← | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase |
RA | 2,437,156 | G→T | 8.2% | P638P (CCG→CCT) | mnmC → | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
RA | 2,438,410 | C→A | 42.3% | A210A (GCG→GCT) | yfcA ← | UPF0721 family inner membrane protein |
RA | 2,442,971 | C→A | 16.5% | E186D (GAG→GAT) | yfcO ← | DUF2544 family putative outer membrane protein |
RA | 2,443,918 | T→G | 12.1% | Y51S (TAT→TCT) | yfcP ← | putative fimbrial‑like adhesin protein |
RA | 2,444,107 | T→G | 44.6% | N150H (AAT→CAT) | yfcQ ← | putative fimbrial‑like adhesin protein |
RA | 2,450,335 | C→T | 100% | intergenic (‑44/+159) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,450,346 | G→T | 100% | intergenic (‑55/+148) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,452,454 | G→T | 100% | P62Q (CCG→CAG) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,453,358 | G→T | 17.7% | I197I (ATC→ATA) | fadI ← | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit |
RA | 2,454,297 | T→G | 100% | E39D (GAA→GAC) | yfcZ ← | UPF0381 family protein |
RA | 2,456,508 | A→T | 36.0% | S6S (TCA→TCT) | yfdF → | uncharacterized protein |
RA | 2,456,705 | C→A | 6.0% | S72Y (TCC→TAC) | yfdF → | uncharacterized protein |
RA | 2,457,130 | C→A | 7.8% | R214S (CGT→AGT) | yfdF → | uncharacterized protein |
RA | 2,459,304 | C→A | 7.9% | I175I (ATC→ATA) | yfdC → | putative inner membrane protein |
RA | 2,459,976 | G→T | 5.6% | intergenic (+114/‑48) | argW → / → intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase |
RA | 2,463,760 | T→A | 36.8% | V384E (GTA→GAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,472,897 | A→T | 41.9% | T73S (ACT→TCT) | dsdA → | D‑serine dehydratase |
RA | 2,474,353 | G→T | 6.6% | Q435K (CAG→AAG) | emrY ← | putative multidrug efflux system |
RA | 2,474,418 | G→T | 100% | S413* (TCA→TAA) | emrY ← | putative multidrug efflux system |
RA | 2,481,974 | G→T | 5.1% | S225* (TCA→TAA) | yfdE ← | acetyl‑CoA:oxalate CoA‑transferase |
RA | 2,487,835 | G→T | 11.2% | S16Y (TCT→TAT) | yfdX ← | uncharacterized protein |
RA | 2,491,279 | G→T | 16.4% | R166S (CGT→AGT) | alaC ← | valine‑pyruvate aminotransferase 3 |
RA | 2,494,310 | C→A | 11.5% | T150K (ACG→AAG) | ypdB → | response regulator activating yhjX; pyruvate‑responsive YpdAB two‑component system |
RA | 2,495,918 | C→A | 5.9% | V683F (GTT→TTT) | fryA ← | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component |
RA | 2,497,946 | G→T | 7.3% | L7I (CTC→ATC) | fryA ← | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component |
RA | 2,501,358 | G→T | 15.4% | R6S (CGC→AGC) | fryC ← | putative enzyme IIC component of PTS |
RA | 2,511,317 | C→A | 15.8% | intergenic (‑6/+203) | yfeA ← / ← alaX | putative diguanylate cyclase/tRNA‑Ala |
RA | 2,516,301 | G→T | 44.7% | L348L (CTC→CTA) | xapB ← | xanthosine transporter |
RA | 2,519,697 | G→T | 5.0% | R173R (CGC→CGA) | yfeR ← | transcriptional regulator of yefH |
RA | 2,520,652 | C→A | 100% | I116I (ATC→ATA) | yfeH → | putative inorganic ion transporter |
RA | 2,522,624 | C→A | 48.0% | A304A (GCG→GCT) | ligA ← | DNA ligase, NAD(+)‑dependent |
RA | 2,526,851 | A→T | 17.9% | intergenic (+112/‑272) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
RA | 2,536,466 | A→T | 5.5% | V141E (GTG→GAG) | cysP ← | thiosulfate‑binding protein |
RA | 2,542,627 | T→G | 91.3% | I389M (ATT→ATG) | yfeW → | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity |
RA | 2,545,086 | C→A | 46.5% | D138Y (GAT→TAT) | ypeA ← | putative acyl‑CoA transferase |
RA | 2,549,676 | C→A | 100% | L28L (CTG→CTT) | eutL ← | putative ethanol utilization carboxysome structural protein |
RA | 2,549,778 | C→A | 46.1% | M293I (ATG→ATT) | eutC ← | ethanolamine ammonia‑lyase, small subunit (light chain) |
RA | 2,552,999 | A→T | 10.1% | A261A (GCA→GCT) | intZ → | CPZ‑55 prophage; putative phage integrase |
RA | 2,555,542 | C→A | 15.6% | R25R (CGG→AGG) | yffO → | CPZ‑55 prophage; uncharacterized protein |
RA | 2,556,759 | G→A | 11.7% | intergenic (+283/‑192) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
RA | 2,556,786 | G→T | 7.9% | intergenic (+310/‑165) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
RA | 2,561,221 | C→A | 47.8% | P82P (CCG→CCT) | eutH ← | ethanolamine transporter |
RA | 2,562,068 | G→T | 5.3% | A268E (GCG→GAG) | eutG ← | ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase, converts acetaldehyde to ethanol |
RA | 2,567,211 | C→A | 8.3% | D152Y (GAT→TAT) | eutT ← | cobalamin adenosyltransferase involved in ethanolamine utilization |
RA | 2,568,720 | C→T | 100% | A33T (GCC→ACC) | eutP ← | putative P‑loop NTPase ethanolamine utilization protein |
RA | 2,569,792 | G→T | 14.5% | R649S (CGT→AGT) | maeB ← | malic enzyme: putative oxidoreductase/putative phosphotransacetylase |
RA | 2,574,820 | C→A | 8.5% | A609E (GCG→GAG) | tktB → | transketolase 2, thiamine triphosphate‑binding |
RA | 2,576,325 | C→A | 100% | E171D (GAG→GAT) | nudK ← | GDP‑mannose pyrophosphatase |
RA | 2,587,029:1 | +G | 100% | coding (101/699 nt) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
RA | 2,589,808 | G→T | 12.8% | Q97K (CAG→AAG) | ypfJ ← | putative neutral zinc metallopeptidase |
RA | 2,589,933 | G→A | 100% | T55I (ACC→ATC) | ypfJ ← | putative neutral zinc metallopeptidase |
RA | 2,597,173 | T→G | 88.7% | L666R (CTG→CGG) | hyfB → | hydrogenase 4, membrane subunit |
RA | 2,601,404 | C→T | 21.8% | L377F (CTC→TTC) | hyfF → | hydrogenase 4, membrane subunit |
RA | 2,603,728 | A→C | 45.1% | Q69P (CAG→CCG) | hyfH → | hydrogenase 4, Fe‑S subunit |
RA | 2,606,516 | G→T | 100% | D420Y (GAC→TAC) | hyfR → | hydrogenase‑4 transcriptional activator |
RA | 2,610,919 | C→A | 100% | intergenic (+3/‑18) | bepA → / → yfgD | periplasmic metalloprotease and chaperone for OM protein maintenance and assembly/putative oxidoreductase |
RA | 2,614,168 | C→A | 100% | D22Y (GAT→TAT) | upp ← | uracil phosphoribosyltransferase |
RA | 2,615,370 | C→A | 53.0% | S272Y (TCT→TAT) | purM → | phosphoribosylaminoimidazole synthetase |
RA | 2,618,693 | G→T | 89.3% | E74* (GAA→TAA) | ppx → | exopolyphosphatase |
RA | 2,628,587 | C→A | 7.2% | Q333K (CAA→AAA) | xseA → | exonuclease VII, large subunit |
RA | 2,632,012 | C→A | 100% | intergenic (‑1/+10) | bamB ← / ← yfgM | BamABCDE complex OM biogenesis lipoprotein/putative anti‑RcsB factor |
RA | 2,633,402 | C→A | 5.3% | R178L (CGC→CTC) | hisS ← | histidyl tRNA synthetase |
RA | 2,643,336 | C→A | 7.0% | D771Y (GAC→TAC) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
RA | 2,645,592 | C→A | 5.6% | D19Y (GAC→TAC) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
RA | 2,651,665 | G→T | 100% | G210G (GGC→GGA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
RA | 2,658,679 | G→T | 45.0% | intergenic (+76/‑115) | yfhR → / → csiE | putative S9 family prolyl oligopeptidase/stationary phase inducible protein |
RA | 2,659,594 | C→A | 7.1% | L267L (CTC→CTA) | csiE → | stationary phase inducible protein |
RA | 2,664,675 | C→A | 5.2% | A31E (GCG→GAG) | hcaB → | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
RA | 2,665,772 | G→T | 5.2% | E123* (GAA→TAA) | hcaD → | phenylpropionate dioxygenase, ferredoxin reductase subunit |
RA | 2,669,978 | C→A | 91.6% | A69A (GCG→GCT) | yphD ← | inner membrane putative ABC superfamily sugar transporter permease |
RA | 2,670,769 | C→A | 5.9% | E318* (GAA→TAA) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
RA | 2,671,274 | C→A | 100% | T149T (ACG→ACT) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
RA | 2,681,873 | T→A | 100% | Q97L (CAG→CTG) | glrR ← | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
RA | 2,683,829 | C→A | 94.5% | R210L (CGT→CTT) | glrK ← | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
RA | 2,689,267 | C→A | 8.0% | I36I (ATC→ATA) | mltF → | membrane‑bound lytic transglycosylase F, murein hydrolase |
RA | 2,692,793 | C→A | 91.3% | H226N (CAT→AAT) | yfhH → | putative DNA‑binding transcriptional regulator |
RA | 2,694,843 | G→T | 94.1% | I82I (ATC→ATA) | pdxJ ← | pyridoxine 5'‑phosphate synthase |
RA | 2,699,380 | C→A | 90.4% | P368P (CCG→CCT) | lepA ← | back‑translocating elongation factor EF4, GTPase |
RA | 2,709,841 | T→A | 31.2% | intergenic (‑33/‑272) | grcA ← / → ung | autonomous glycyl radical cofactor/uracil‑DNA‑glycosylase |
RA | 2,711,755 | C→A | 6.0% | D45Y (GAC→TAC) | yfiF ← | putative methyltransferase |
RA | 2,715,643 | G→T | 100% | E778* (GAA→TAA) | pka → | protein lysine acetyltransferase |
RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
RA | 2,725,657 | C→A | 12.5% | D626Y (GAC→TAC) | clpB ← | protein disaggregation chaperone |
RA | 2,725,747 | G→T | 8.5% | R596S (CGC→AGC) | clpB ← | protein disaggregation chaperone |
RA | 2,726,786 | C→A | 100% | A249A (GCG→GCT) | clpB ← | protein disaggregation chaperone |
RA | 2,733,753 | C→T | 100% | E253K (GAG→AAG) | aroF ← | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible |
RA | 2,735,293 | A→T | 5.3% | I20I (ATA→ATT) | yfiR → | putative periplasmic inhibitor of YfiN activity |
RA | 2,738,750 | T→G | 5.5% | V176V (GTA→GTC) | rimM ← | 16S rRNA processing protein |
RA | 2,740,948 | C→A | 51.0% | T69T (ACG→ACT) | ffh ← | Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) |
RA | 2,741,288 | C→A | 38.6% | intergenic (‑134/‑33) | ffh ← / → ypjD | Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)/cytochrome c assembly protein family inner membrane protein |
RA | 2,748,332 | C→A | 10.6% | I26I (ATC→ATA) | smpB → | trans‑translation protein |
RA | 2,750,424 | G→T | 48.1% | E303* (GAA→TAA) | intA → | CP4‑57 prophage; integrase |
RA | 2,753,076 | G→A | 11.3% | D245N (GAT→AAT) | yfjI → | CP4‑57 prophage; uncharacterized protein |
RA | 2,753,424 | G→T | 19.6% | G361* (GGA→TGA) | yfjI → | CP4‑57 prophage; uncharacterized protein |
RA | 2,754,840 | T→A | 10.9% | E687V (GAA→GTA) | yfjK ← | DEAD/H helicase‑like protein, CP4‑57 putative defective prophage |
RA | 2,756,683 | G→T | 37.7% | L73I (CTC→ATC) | yfjK ← | DEAD/H helicase‑like protein, CP4‑57 putative defective prophage |
RA | 2,762,153 | C→A | 40.8% | R44S (CGC→AGC) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
RA | 2,763,057 | C→A | 5.8% | intergenic (+212/‑5) | yfjQ → / → yfjR | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
RA | 2,767,911 | T→A | 7.0% | V412D (GTC→GAC) | yfjW → | CP4‑57 prophage; putative inner membrane protein |
RA | 2,771,358 | G→A | 100% | intergenic (+217/+147) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
RA | 2,771,366 | G→A | 17.3% | intergenic (+225/+139) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
RA | 2,776,219 | C→A | 15.2% | intergenic (‑134/+205) | ypjA ← / ← pinH | adhesin‑like autotransporter/pseudogene, invertase resolvase family |
RA | 2,778,281 | C→T | 19.8% | pseudogene (90/1374 nt) | ypjC ← | pseudogene |
RA | 2,778,820 | G→A | 10.2% | intergenic (‑450/+301) | ypjC ← / ← ileY | pseudogene/tRNA‑Ile |
RA | 2,779,067 | C→A | 100% | intergenic (‑697/+54) | ypjC ← / ← ileY | pseudogene/tRNA‑Ile |
RA | 2,779,767 | A→T | 9.9% | pseudogene (12/2253 nt) | ygaQ → | uncharacterized protein; putative enzyme |
RA | 2,780,661 | C→A | 11.3% | pseudogene (906/2253 nt) | ygaQ → | uncharacterized protein; putative enzyme |
RA | 2,783,587 | C→A | 41.0% | R83S (CGC→AGC) | lhgO → | L‑2‑hydroxyglutarate oxidase |
RA | 2,794,428 | G→T | 6.0% | R35R (CGG→CGT) | nrdI → | NrdEF cluster assembly flavodoxin |
RA | 2,798,195 | A→T | 6.0% | K8* (AAA→TAA) | proV → | glycine betaine transporter subunit |
RA | 2,799,737 | C→A | 48.1% | V123V (GTC→GTA) | proW → | glycine betaine transporter subunit |
RA | 2,801,706 | C→A | 6.9% | pseudogene (32/1178 nt) | ygaY → | pseudogene, major facilitator transporter superfamily;putative transport; Not classified; putative transport protein |
RA | 2,805,420 | C→A | 17.1% | A212E (GCG→GAG) | emrA → | multidrug efflux system |
RA | 2,808,737 | C→A | 13.5% | M354I (ATG→ATT) | gshA ← | glutamate‑cysteine ligase |
RA | 2,808,907 | C→A | 7.5% | E298* (GAA→TAA) | gshA ← | glutamate‑cysteine ligase |
RA | 2,808,987 | G→T | 68.7% | S271* (TCG→TAG) | gshA ← | glutamate‑cysteine ligase |
RA | 2,812,678 | G→T | 6.1% | intergenic (‑173/+62) | csrA ← / ← alaS | pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase |
RA | 2,819,067 | C→A | 36.6% | intergenic (‑132/‑124) | mltB ← / → srlA | membrane‑bound lytic murein transglycosylase B/glucitol/sorbitol‑specific enzyme IIC component of PTS |
RA | 2,819,102 | G→T | 45.3% | intergenic (‑167/‑89) | mltB ← / → srlA | membrane‑bound lytic murein transglycosylase B/glucitol/sorbitol‑specific enzyme IIC component of PTS |
RA | 2,823,071 | T→A | 41.1% | L222L (CTT→CTA) | srlR → | sorbitol‑inducible srl operon transcriptional repressor |
RA | 2,825,783 | C→T | 100% | intergenic (‑135/‑52) | norR ← / → norV | anaerobic nitric oxide reductase DNA‑binding transcriptional activator/anaerobic nitric oxide reductase flavorubredoxin |
RA | 2,828,952 | C→A | 100% | T611T (ACG→ACT) | hypF ← | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
RA | 2,831,086 | C→A | 89.9% | E127* (GAA→TAA) | hydN ← | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
RA | 2,835,094 | C→A | 89.6% | P249Q (CCG→CAG) | ascB → | cryptic 6‑phospho‑beta‑glucosidase |
RA | 2,836,192 | C→T | 9.0% | G71S (GGC→AGC) | hycI ← | protease involved in processing C‑terminal end of HycE |
RA | 2,837,721 | C→A | 8.5% | D131Y (GAC→TAC) | hycF ← | formate hydrogenlyase complex iron‑sulfur protein |
RA | 2,840,562 | C→A | 17.0% | V70V (GTG→GTT) | hycD ← | hydrogenase 3, membrane subunit |
RA | 2,841,044 | C→A | 100% | A519A (GCG→GCT) | hycC ← | hydrogenase 3, membrane subunit |
RA | 2,846,112 | C→A | 100% | I206I (ATC→ATA) | hypD → | hydrogenase maturation protein |
RA | 2,846,721 | G→T | 6.0% | D37Y (GAT→TAT) | hypE → | carbamoyl dehydratase, hydrogenases 1,2,3 maturation protein |
RA | 2,848,002 | T→A | 7.4% | C102* (TGT→TGA) | fhlA → | formate hydrogenlyase transcriptional activator |
RA | 2,850,790 | C→A | 100% | I113I (ATC→ATA) | mutS → | methyl‑directed mismatch repair protein |
RA | 2,852,854 | G→T | 7.3% | P801P (CCG→CCT) | mutS → | methyl‑directed mismatch repair protein |
RA | 2,860,460 | G→T | 10.4% | R151S (CGC→AGC) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
RA | 2,873,087 | G→T | 100% | V15V (GTC→GTA) | ygbT ← | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
RA | 2,876,760 | C→T | 100% | G246G (GGG→GGA) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
RA | 2,878,668 | G→T | 100% | V637V (GTC→GTA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,879,449 | G→T | 93.6% | S377* (TCA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,882,865 | G→T | 13.3% | V198V (GTC→GTA) | cysI ← | sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding |
RA | 2,884,385 | G→T | 8.8% | V291V (GTC→GTA) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
RA | 2,886,199 | C→A | 10.9% | H62N (CAT→AAT) | ygcN → | putative oxidoreductase |
RA | 2,888,584 | G→T | 100% | I185I (ATC→ATA) | ygcQ ← | putative flavoprotein |
RA | 2,889,129 | C→A | 5.6% | A4S (GCA→TCA) | ygcQ ← | putative flavoprotein |
RA | 2,893,446 | T→A | 94.4% | K63* (AAA→TAA) | ygcW ← | putative dehydrogenase |
RA | 2,899,073 | C→A | 5.4% | R2S (CGC→AGC) | ygcG → | uncharacterized protein |
RA | 2,902,059 | C→T | 12.6% | V323I (GTC→ATC) | pyrG ← | CTP synthetase |
RA | 2,904,743 | C→T | 9.2% | intergenic (‑45/+33) | mazE ← / ← relA | antitoxin of the ChpA‑ChpR toxin‑antitoxin system/(p)ppGpp synthetase I/GTP pyrophosphokinase |
RA | 2,918,415 | G→A | 7.3% | P75P (CCC→CCT) | syd ← | SecY‑interacting protein |
RA | 2,919,922 | G→T | 8.5% | D86Y (GAT→TAT) | ygdH → | UPF0717 family protein |
RA | 2,920,050 | C→A | 7.0% | I128I (ATC→ATA) | ygdH → | UPF0717 family protein |
RA | 2,921,101 | C→A | 6.6% | intergenic (+70/‑487) | ygdH → / → sdaC | UPF0717 family protein/putative serine transporter |
RA | 2,921,245 | G→T | 7.5% | intergenic (+214/‑343) | ygdH → / → sdaC | UPF0717 family protein/putative serine transporter |
RA | 2,927,618 | C→A | 8.8% | Q9K (CAG→AAG) | fucP → | L‑fucose transporter |
RA | 2,931,717 | C→A | 100% | N307K (AAC→AAA) | fucK → | L‑fuculokinase |
RA | 2,932,832 | C→A | 7.5% | R36S (CGT→AGT) | fucR → | l‑fucose operon activator |
RA | 2,932,835 | C→T | 87.8% | R37C (CGC→TGC) | fucR → | l‑fucose operon activator |
RA | 2,934,843 | G→T | 100% | H50N (CAT→AAT) | ygdD ← | UPF0382 family inner membrane protein |
RA | 2,937,613 | G→T | 12.2% | T306T (ACG→ACT) | csdA → | cysteine sulfinate desulfinase |
RA | 2,938,035 | G→T | 17.9% | P45P (CCG→CCT) | csdE → | CsdA‑binding activator; Fe‑S protein |
RA | 2,956,284 | C→A | 5.1% | D78Y (GAT→TAT) | ygdB ← | DUF2509 family protein |
RA | 2,959,004 | G→A | 100% | I131I (ATC→ATT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
RA | 2,961,295 | G→T | 21.4% | R167S (CGC→AGC) | ptsP ← | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
RA | 2,962,962 | T→A | 91.6% | intergenic (‑626/‑59) | rppH ← / → mutH | RNA pyrophosphohydrolase/methyl‑directed mismatch repair protein |
RA | 2,965,691 | C→A | 13.3% | L246I (CTC→ATC) | tas → | putative NADP(H)‑dependent aldo‑keto reductase |
RA | 2,969,113 | A→T | 41.4% | I87I (ATT→ATA) | aas ← | fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase |
RA | 2,970,031 | C→A | 14.7% | S25* (TCA→TAA) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
RA | 2,970,703 | C→A | 7.8% | A249E (GCG→GAG) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
RA | 2,978,097 | C→A | 12.5% | P285P (CCG→CCT) | yqeF ← | short chain acyltransferase |
RA | 2,978,850 | C→A | 54.4% | V34V (GTG→GTT) | yqeF ← | short chain acyltransferase |
RA | 2,979,222 | C→T | 8.9% | S6F (TCT→TTT) | yqeG → | putative transporter |
RA | 2,985,256 | G→T | 12.8% | intergenic (+138/‑197) | ygeG → / → ygeH | SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator |
RA | 2,985,884 | C→T | 84.6% | I144I (ATC→ATT) | ygeH → | putative transcriptional regulator |
RA | 2,987,928 | C→A | 19.3% | pseudogene (524/633 nt) | ygeK ← | pseudogene; putative 2‑component transcriptional regulator |
RA | 2,988,554 | G→A | 88.2% | intergenic (‑103/+119) | ygeK ← / ← ygeN | pseudogene; putative 2‑component transcriptional regulator/pseudogene |
RA | 2,988,641 | T→C | 20.3% | intergenic (‑190/+32) | ygeK ← / ← ygeN | pseudogene; putative 2‑component transcriptional regulator/pseudogene |
RA | 2,989,295 | C→A | 100% | pseudogene (85/261 nt) | ygeN ← | pseudogene |
RA | 2,993,211 | C→A | 100% | V14L (GTG→TTG) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
RA | 2,993,699 | C→A | 100% | intergenic (‑449/‑5) | ygeR ← / → xdhA | LysM domain‑containing M23 family putative peptidase; septation lipoprotein/xanthine dehydrogenase, molybdenum binding subunit |
RA | 2,999,827 | C→A | 8.7% | D69E (GAC→GAA) | ygeW → | putative carbamoyltransferase |
RA | 3,007,405 | A→T | 41.1% | L65* (TTG→TAG) | yqeB ← | XdhC‑CoxI family protein with NAD(P)‑binding Rossman fold |
RA | 3,009,187 | G→T | 93.4% | intergenic (+90/‑232) | mocA → / → ygfK | CTP:molybdopterin cytidylyltransferase/putative Fe‑S subunit oxidoreductase subunit |
RA | 3,017,285 | G→T | 100% | D871Y (GAC→TAC) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
RA | 3,018,544 | G→T | 5.4% | A279S (GCC→TCC) | xanQ → | xanthine permease |
RA | 3,021,141 | T→C | 12.2% | I221T (ATC→ACC) | ygfQ → | putative purine permease |
RA | 3,024,081 | A→C | 89.5% | V70V (GTT→GTG) | ygfT ← | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
RA | 3,024,983 | C→G | 94.4% | G86G (GGC→GGG) | uacT → | uric acid permease |
RA | 3,028,224 | G→T | 15.4% | L104I (CTC→ATC) | lysS ← | lysine tRNA synthetase, constitutive |
RA | 3,030,181 | G→T | 89.5% | H429N (CAT→AAT) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
RA | 3,030,376 | C→A | 10.3% | E364* (GAA→TAA) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
RA | 3,035,271 | G→T | 48.3% | V200V (GTG→GTT) | ygfZ → | iron‑sulfur cluster repair protein, plumbagin resistance |
RA | 3,036,052 | C→A | 47.4% | S152S (TCG→TCT) | yqfA ← | hemolysin III family HylIII inner membrane protein |
RA | 3,039,409 | T→G | 8.4% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,039,703 | C→A | 6.6% | A900S (GCG→TCG) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,041,026 | C→A | 16.7% | D459Y (GAC→TAC) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,041,321 | G→T | 5.2% | I360I (ATC→ATA) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,044,437 | T→A | 49.9% | intergenic (‑411/+37) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
RA | 3,044,464 | G→A | 100% | intergenic (‑438/+10) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
RA | 3,046,473 | G→T | 46.2% | N135K (AAC→AAA) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
RA | 3,048,490 | A→T | 14.7% | L105* (TTG→TAG) | ygfB ← | UPF0149 family protein |
RA | 3,049,220 | C→A | 8.6% | R84R (CGG→AGG) | zapA → | FtsZ stabilizer |
RA | 3,058,769 | C→T | 93.5% | I203I (ATC→ATT) | scpC → | propionyl‑CoA:succinate CoA transferase |
RA | 3,059,577 | G→T | 19.4% | D473Y (GAT→TAT) | scpC → | propionyl‑CoA:succinate CoA transferase |
RA | 3,062,894 | T→A | 7.0% | V91V (GTA→GTT) | mscS ← | mechanosensitive channel protein, small conductance |
RA | 3,064,483 | C→A | 11.9% | D41Y (GAC→TAC) | fbaA ← | fructose‑bisphosphate aldolase, class II |
RA | 3,064,914 | G→T | 100% | I356I (ATC→ATA) | pgk ← | phosphoglycerate kinase |
RA | 3,065,300 | C→A | 43.4% | D228Y (GAT→TAT) | pgk ← | phosphoglycerate kinase |
RA | 3,066,958 | G→T | 5.7% | T31T (ACC→ACA) | epd ← | D‑erythrose 4‑phosphate dehydrogenase |
RA | 3,068,854 | C→A | 41.1% | E230* (GAG→TAG) | yggF ← | fructose 1,6 bisphosphatase isozyme |
RA | 3,072,841 | C→T | 6.3% | intergenic (‑152/+162) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
RA | 3,074,352 | C→T | 48.8% | D215N (GAC→AAC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
RA | 3,075,114 | C→A | 100% | intergenic (‑120/‑158) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era |
RA | 3,076,526 | C→A | 100% | D211Y (GAC→TAC) | speB ← | agmatinase |
RA | 3,080,098 | T→G | 51.8% | S12A (TCT→GCT) | metK → | S‑adenosylmethionine synthetase |
RA | 3,080,618 | T→A | 100% | V185E (GTG→GAG) | metK → | S‑adenosylmethionine synthetase |
RA | 3,081,697 | T→A | 16.2% | C19S (TGC→AGC) | galP → | D‑galactose transporter |
RA | 3,084,798 | C→A | 7.3% | L102L (CTC→CTA) | rsmE → | 16S rRNA m(3)U1498 methyltransferase, SAM‑dependent |
RA | 3,085,649 | C→A | 7.7% | T138K (ACG→AAG) | gshB → | glutathione synthetase |
RA | 3,088,065 | C→A | 90.6% | V125V (GTG→GTT) | yggR ← | putative PilT family AAA+ ATPase |
RA | 3,089,392 | C→A | 14.3% | L72I (CTC→ATC) | yggT → | putative inner membrane protein; compensates for loss in K+ uptake |
RA | 3,091,476 | C→A | 6.2% | T284K (ACG→AAG) | yggW → | HemN family putative oxidoreductase |
RA | 3,092,182 | C→A | 15.2% | C248F (TGT→TTT) | yggM ← | DUF1202 family putative secreted protein |
RA | 3,096,445 | A→T | 13.9% | Q25L (CAA→CTA) | mutY → | adenine DNA glycosylase |
RA | 3,097,262 | C→T | 88.3% | F297F (TTC→TTT) | mutY → | adenine DNA glycosylase |
RA | 3,099,851 | C→A | 12.1% | S260* (TCG→TAG) | nupG → | nucleoside transporter |
RA | 3,100,053 | C→T | 45.1% | I327I (ATC→ATT) | nupG → | nucleoside transporter |
RA | 3,104,247 | C→A | 15.3% | R80L (CGA→CTA) | yghD ← | putative membrane‑anchored secretion pathway M‑type protein |
RA | 3,110,213 | T→A | 7.9% | A753A (GCA→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,110,751 | C→A | 100% | R574L (CGT→CTT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,111,434 | C→A | 100% | A346A (GCG→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,118,925 | C→A | 17.8% | P319P (CCG→CCT) | glcE ← | glycolate oxidase FAD binding subunit |
RA | 3,120,216 | C→A | 93.8% | D389Y (GAT→TAT) | glcD ← | glycolate oxidase subunit, FAD‑linked |
RA | 3,121,242 | C→A | 16.0% | D47Y (GAC→TAC) | glcD ← | glycolate oxidase subunit, FAD‑linked |
RA | 3,132,984 | G→A | 15.5% | intergenic (+32/+91) | yghU → / ← hybG | putative S‑transferase/hydrogenase 2 accessory protein |
RA | 3,133,918 | C→A | 14.5% | E81* (GAA→TAA) | hybE ← | hydrogenase 2‑specific chaperone |
RA | 3,134,528 | C→A | 5.6% | D40Y (GAT→TAT) | hybD ← | maturation protease for hydrogenase 2 |
RA | 3,136,368 | G→T | 20.9% | R386S (CGT→AGT) | hybB ← | putative hydrogenase 2 cytochrome b type component |
RA | 3,142,668 | G→T | 89.3% | L55I (CTC→ATC) | yqhA ← | UPF0114 family putative inner membrane protein |
RA | 3,144,158 | C→A | 90.8% | intergenic (+253/+19) | yghA → / ← exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
RA | 3,149,310 | C→A | 32.7% | T199T (ACC→ACA) | yqhD → | aldehyde reductase, NADPH‑dependent |
RA | 3,164,049 | G→T | 41.2% | M69I (ATG→ATT) | qseC → | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB |
RA | 3,164,230 | C→A | 90.0% | R130S (CGT→AGT) | qseC → | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB |
RA | 3,173,669 | G→T | 93.4% | A189A (GCG→GCT) | ygiB → | DUF1190 family protein |
RA | 3,176,051 | C→A | 11.0% | S48* (TCA→TAA) | zupT → | zinc transporter |
RA | 3,176,733 | G→T | 91.9% | intergenic (+51/+439) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
RA | 3,184,654 | A→T | 16.8% | N222Y (AAT→TAT) | yqiI → | fimbrial protein |
RA | 3,190,426 | T→A | 5.2% | T859S (ACC→TCC) | glnE ← | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
RA | 3,203,599 | A→T | 42.9% | W102R (TGG→AGG) | tsaD ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
RA | 3,208,581 | C→A | 49.4% | E84D (GAG→GAT) | mug ← | G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
RA | 3,213,497 | C→A | 13.9% | I215I (ATC→ATA) | patA → | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
RA | 3,214,709 | C→A | 19.2% | intergenic (‑103/‑116) | ygjH ← / → ebgR | putative tRNA binding protein; putative tRNA corner chaperone/transcriptional repressor |
RA | 3,217,098 | C→A | 12.1% | I369I (ATC→ATA) | ebgA → | evolved beta‑D‑galactosidase, alpha subunit |
RA | 3,217,289 | A→T | 89.0% | H433L (CAC→CTC) | ebgA → | evolved beta‑D‑galactosidase, alpha subunit |
RA | 3,219,616 | A→T | 7.6% | T8T (ACA→ACT) | ygjI → | putative transporter |
RA | 3,224,927 | C→A | 100% | intergenic (+329/‑97) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
RA | 3,225,300 | C→A | 45.0% | Q93K (CAG→AAG) | fadH → | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
RA | 3,229,926 | C→A | 49.4% | L10I (CTC→ATC) | ygjQ → | DUF218 superfamily protein |
RA | 3,230,857 | C→G | 91.7% | A63G (GCC→GGC) | ygjR → | putative NAD(P)‑dependent dehydrogenase |
RA | 3,231,349 | A→C | 100% | Q227P (CAG→CCG) | ygjR → | putative NAD(P)‑dependent dehydrogenase |
RA | 3,233,218 | C→A | 15.9% | intergenic (+314/‑85) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
RA | 3,237,654 | C→A | 14.0% | M149I (ATG→ATT) | uxaC ← | uronate isomerase |
RA | 3,243,768 | C→T | 6.8% | intergenic (+33/‑153) | yqjK → / → yqjF | uncharacterized protein/putative quinol oxidase subunit |
RA | 3,245,848 | G→T | 100% | L62L (CTG→CTT) | yhaH → | DUF805 family inner membrane protein |
RA | 3,251,070 | C→A | 17.4% | P100P (CCG→CCT) | yhaO ← | putative transporter |
RA | 3,252,258 | C→A | 100% | D251Y (GAT→TAT) | tdcG ← | L‑serine dehydratase 3, anaerobic |
RA | 3,254,793 | C→A | 38.3% | D329Y (GAT→TAT) | tdcE ← | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
RA | 3,257,209 | C→A | 14.0% | E390* (GAA→TAA) | tdcC ← | L‑threonine/L‑serine transporter |
RA | 3,258,871 | G→T | 7.7% | L173I (CTC→ATC) | tdcB ← | L‑threonine dehydratase, catabolic |
RA | 3,260,550 | C→T | 10.1% | intergenic (‑126/‑189) | tdcA ← / → tdcR | tdc operon transcriptional activator/L‑threonine dehydratase operon activator protein |
RA | 3,262,436 | C→T | 11.7% | S221S (AGC→AGT) | yhaC → | pentapetide repeats‑related protein |
RA | 3,263,315 | T→C | 7.8% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,263,466 | G→T | 7.4% | intergenic (+505/+109) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,266,646 | C→A | 100% | G91C (GGT→TGT) | garL ← | alpha‑dehydro‑beta‑deoxy‑D‑glucarate aldolase |
RA | 3,267,286 | C→A | 16.7% | P327P (CCG→CCT) | garP ← | putative (D)‑galactarate transporter |
RA | 3,268,357 | C→A | 9.2% | intergenic (‑91/‑284) | garP ← / → garD | putative (D)‑galactarate transporter/(D)‑galactarate dehydrogenase |
RA | 3,271,128 | A→C | 5.7% | T145P (ACC→CCC) | yhaV → | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
RA | 3,271,233 | C→A | 17.5% | V264V (GTG→GTT) | agaR ← | transcriptional repressor of the aga regulon |
RA | 3,285,974 | C→A | 5.2% | D241Y (GAC→TAC) | rsmI ← | 16S rRNA C1402 2'‑O‑ribose methyltransferase, SAM‑dependent |
RA | 3,290,970 | A→T | 6.5% | R176R (CGT→CGA) | yraQ ← | putative inner membrane permease |
RA | 3,292,182 | G→T | 13.6% | G8G (GGC→GGA) | yraR ← | putative nucleoside‑diphosphate‑sugar epimerase |
RA | 3,292,914 | C→A | 20.3% | D121Y (GAT→TAT) | yhbP ← | UPF0306 family protein |
RA | 3,296,612 | G→T | 86.5% | A255A (GCG→GCT) | yhbV → | U32 peptidase family protein |
RA | 3,298,059 | C→A | 17.1% | R373L (CGC→CTC) | mtr ← | tryptophan transporter of high affinity |
RA | 3,302,027 | G→T | 100% | S86* (TCG→TAG) | nlpI ← | lipoprotein involved in osmotic sensitivity and filamentation |
RA | 3,311,841 | C→A | 9.2% | intergenic (‑193/‑155) | metY ← / → argG | tRNA‑Met/argininosuccinate synthetase |
RA | 3,314,870 | C→A | 100% | A35S (GCG→TCG) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 3,318,271 | G→T | 40.0% | intergenic (‑1/+89) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
RA | 3,324,066 | C→A | 45.7% | E350* (GAA→TAA) | obgE ← | GTPase involved in cell partioning and DNA repair |
RA | 3,329,704 | G→T | 15.8% | V50V (GTC→GTA) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
RA | 3,332,632 | G→T | 19.7% | L265I (CTT→ATT) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
RA | 3,334,464 | C→A | 11.2% | S277R (AGC→AGA) | yrbG → | putative calcium/sodium:proton antiporter |
RA | 3,334,892 | G→T | 41.7% | D90Y (GAT→TAT) | kdsD → | D‑arabinose 5‑phosphate isomerase |
RA | 3,335,651 | C→A | 18.0% | S7* (TCG→TAG) | kdsC → | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase |
RA | 3,345,640 | A→T | 5.9% | Y249N (TAC→AAC) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
RA | 3,345,737 | A→C | 9.4% | D216E (GAT→GAG) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
RA | 3,347,778 | G→A | 94.4% | intergenic (‑369/‑306) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
RA | 3,351,650 | G→T | 92.2% | E1189D (GAG→GAT) | gltB → | glutamate synthase, large subunit |
RA | 3,354,405 | C→T | 100% | intergenic (+430/‑130) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
RA | 3,360,045 | G→T | 33.1% | F11L (TTC→TTA) | insH1 ← | IS5 transposase and trans‑activator |
RA | 3,365,253 | G→T | 5.4% | I227I (ATC→ATA) | nanT ← | sialic acid transporter |
RA | 3,365,607 | G→T | 100% | I109I (ATC→ATA) | nanT ← | sialic acid transporter |
RA | 3,368,168 | C→T | 19.3% | intergenic (‑320/‑60) | nanR ← / → dcuD | transcriptional repressor of the nan operon, induced by sialic acid/putative transporter |
RA | 3,369,534 | C→A | 5.1% | A436E (GCG→GAG) | dcuD → | putative transporter |
RA | 3,371,948 | G→A | 9.2% | T21T (ACC→ACT) | rplM ← | 50S ribosomal subunit protein L13 |
RA | 3,372,318 | G→T | 41.3% | R347R (CGG→AGG) | yhcM ← | putative AFG1‑like family P‑loop ATPase |
RA | 3,373,985 | C→A | 100% | intergenic (+37/‑117) | yhcB → / → degQ | DUF1043 family inner membrane‑anchored protein/serine endoprotease, periplasmic |
RA | 3,375,260 | G→T | 100% | D387Y (GAT→TAT) | degQ → | serine endoprotease, periplasmic |
RA | 3,377,958 | G→T | 10.0% | intergenic (‑331/‑104) | mdh ← / → argR | malate dehydrogenase, NAD(P)‑binding/l‑arginine‑responsive arginine metabolism regulon transcriptional regulator |
RA | 3,381,195 | G→T | 12.7% | S118* (TCG→TAG) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
RA | 3,385,516 | A→T | 5.5% | intergenic (‑129/+301) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,385,571 | C→G | 6.1% | intergenic (‑184/+246) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,392,935 | C→T | 11.7% | V135I (GTT→ATT) | mreC ← | cell wall structural complex MreBCD transmembrane component MreC |
RA | 3,395,059 | C→A | 42.7% | V545F (GTC→TTC) | csrD ← | targeting factor for csrBC sRNA degradation |
RA | 3,396,082 | G→T | 100% | R204S (CGT→AGT) | csrD ← | targeting factor for csrBC sRNA degradation |
RA | 3,397,077 | G→T | 5.2% | A79S (GCC→TCC) | acuI → | putative acryloyl‑CoA reductase |
RA | 3,397,316 | C→A | 16.5% | G158G (GGC→GGA) | acuI → | putative acryloyl‑CoA reductase |
RA | 3,399,100 | C→A | 47.9% | F102L (TTC→TTA) | accB → | acetyl CoA carboxylase, BCCP subunit |
RA | 3,404,059 | C→A | 6.6% | R141S (CGC→AGC) | dusB → | tRNA‑dihydrouridine synthase B |
RA | 3,407,007 | G→A | 91.9% | intergenic (‑183/‑216) | acrS ← / → acrE | acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein |
RA | 3,407,969 | C→A | 8.9% | N249K (AAC→AAA) | acrE → | cytoplasmic membrane lipoprotein |
RA | 3,411,250 | G→T | 5.9% | E953D (GAG→GAT) | acrF → | multidrug efflux system protein |
RA | 3,412,733 | G→T | 46.8% | pseudogene (268/960 nt) | yhdW → | pseudogene, amino‑acid transporter homology;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
RA | 3,415,551 | C→A | 6.2% | P290T (CCT→ACT) | yhdY → | putative amino‑acid transporter subunit |
RA | 3,416,716 | G→T | 15.7% | intergenic (+163/+66) | yhdZ → / ← rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
RA | 3,416,890 | T→G | 7.0% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
RA | 3,424,363 | T→A | 5.4% | T138S (ACC→TCC) | tsaC ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein, threonine‑dependent ADP‑forming ATPase |
RA | 3,432,676 | C→A | 9.3% | E65* (GAA→TAA) | yhdN ← | DUF1992 family protein |
RA | 3,432,840 | C→A | 12.8% | R10L (CGC→CTC) | yhdN ← | DUF1992 family protein |
RA | 3,433,018 | T→G | 15.5% | E114A (GAG→GCG) | rplQ ← | 50S ribosomal subunit protein L17 |
RA | 3,437,638 | G→T | 15.0% | G87G (GGC→GGA) | rplO ← | 50S ribosomal subunit protein L15 |
RA | 3,440,151 | G→T | 100% | I31I (ATC→ATA) | rpsN ← | 30S ribosomal subunit protein S14 |
RA | 3,440,444 | G→T | 100% | S118S (TCC→TCA) | rplE ← | 50S ribosomal subunit protein L5 |
RA | 3,440,832 | T→C | 100% | N99D (AAC→GAC) | rplX ← | 50S ribosomal subunit protein L24 |
RA | 3,448,742 | C→A | 8.2% | E6* (GAA→TAA) | gspA ← | general secretory pathway component, cryptic |
RA | 3,451,616 | T→G | 41.0% | V627V (GTT→GTG) | gspD → | general secretory pathway component, cryptic |
RA | 3,452,566 | C→A | 44.3% | T290K (ACG→AAG) | gspE → | general secretory pathway component, cryptic |
RA | 3,455,789 | G→T | 5.5% | M29I (ATG→ATT) | gspJ → | putative general secretory pathway component, cryptic |
RA | 3,455,867 | C→A | 100% | I55I (ATC→ATA) | gspJ → | putative general secretory pathway component, cryptic |
RA | 3,457,607 | G→T | 17.7% | V109V (GTG→GTT) | gspL → | general secretory pathway component, cryptic |
RA | 3,457,896 | C→A | 19.3% | P206T (CCT→ACT) | gspL → | general secretory pathway component, cryptic |
RA | 3,470,272 | C→A | 6.6% | V169V (GTG→GTT) | fkpA ← | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
RA | 3,473,139 | G→T | 100% | I276I (ATC→ATA) | kefB ← | potassium:proton antiporter |
RA | 3,476,264 | C→A | 5.9% | S539R (AGC→AGA) | yheS → | putative transporter subunit of ABC superfamily: ATP‑binding component |
RA | 3,479,769 | A→T | 100% | E97D (GAA→GAT) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
RA | 3,487,320 | G→A | 15.8% | intergenic (+212/‑50) | tsgA → / → nirB | putative transporter/nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,488,966 | G→C | 100% | A533P (GCC→CCC) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,489,397 | C→A | 100% | F676L (TTC→TTA) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,495,516 | C→A | 17.4% | S297* (TCG→TAG) | frlB → | fructoselysine‑6‑P‑deglycase |
RA | 3,501,571 | C→A | 93.4% | G127C (GGC→TGC) | php ← | phosphotriesterase homology protein |
RA | 3,504,143 | G→T | 93.9% | R65S (CGT→AGT) | yhfX ← | putative pyridoxal 5'‑phosphate binding protein |
RA | 3,507,749 | G→T | 100% | H224N (CAT→AAT) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
RA | 3,508,852 | G→T | 22.8% | P141T (CCC→ACC) | dam ← | DNA adenine methyltransferase |
RA | 3,509,102 | G→T | 5.3% | S57R (AGC→AGA) | dam ← | DNA adenine methyltransferase |
RA | 3,513,424 | A→T | 93.2% | V213V (GTT→GTA) | hofQ ← | DNA catabolic putative fimbrial transporter |
RA | 3,513,975 | C→A | 12.4% | D30Y (GAC→TAC) *135L (TGA→TTA) |
hofQ ← hofP ← |
DNA catabolic putative fimbrial transporter DNA catabolic protein |
RA | 3,519,657 | G→T | 100% | intergenic (‑149/‑171) | nudE ← / → yrfF | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH/inner membrane protein |
RA | 3,521,598 | C→A | 14.5% | Q591K (CAG→AAG) | yrfF → | inner membrane protein |
RA | 3,525,950 | C→T | 6.6% | intergenic (‑152/‑227) | yhgE ← / → pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase |
RA | 3,528,406 | G→T | 5.3% | I274I (ATC→ATA) | envZ ← | sensory histidine kinase in two‑component regulatory system with OmpR |
RA | 3,535,370 | C→A | 7.3% | S535R (AGC→AGA) | feoB → | fused ferrous iron transporter, protein B: GTP‑binding protein/membrane protein |
RA | 3,536,360 | C→A | 11.1% | intergenic (+37/‑166) | feoC → / → yhgA | putative DNA‑binding transcriptional regulator/transposase_31 family protein |
RA | 3,541,936 | G→T | 10.2% | L498L (CTC→CTA) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
RA | 3,543,959 | G→T | 100% | A625E (GCG→GAG) | malP ← | maltodextrin phosphorylase |
RA | 3,544,369 | T→A | 12.3% | E488D (GAA→GAT) | malP ← | maltodextrin phosphorylase |
RA | 3,544,521 | G→T | 51.2% | H438N (CAC→AAC) | malP ← | maltodextrin phosphorylase |
RA | 3,549,303 | G→T | 12.1% | V302V (GTC→GTA) | rtcA ← | RNA 3'‑terminal phosphate cyclase |
RA | 3,557,815 | T→A | 17.7% | K709N (AAA→AAT) | glgP ← | glycogen phosphorylase |
RA | 3,559,991 | G→T | 15.8% | S468* (TCG→TAG) | glgA ← | glycogen synthase |
RA | 3,561,258 | C→A | 5.7% | D46Y (GAT→TAT) | glgA ← | glycogen synthase |
RA | 3,561,574 | C→A | 100% | W372L (TGG→TTG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
RA | 3,562,409 | C→A | 14.1% | E94* (GAA→TAA) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
RA | 3,563,911 | C→A | 16.4% | E257* (GAA→TAA) | glgX ← | glycogen debranching enzyme |
RA | 3,567,059 | C→A | 9.2% | intergenic (‑197/+76) | glgB ← / ← asd | 1,4‑alpha‑glucan branching enzyme/aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding |
RA | 3,568,708 | C→A | 12.2% | S93* (TCA→TAA) | yhgN → | UPF0056 family inner membrane protein |
RA | 3,571,153 | C→A | 8.5% | E312* (GAA→TAA) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
RA | 3,571,612 | C→T | 14.1% | A159T (GCC→ACC) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
RA | 3,571,618 | C→A | 52.1% | D157Y (GAT→TAT) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
RA | 3,571,951 | C→A | 12.7% | E46* (GAA→TAA) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
RA | 3,574,500 | G→T | 12.2% | M1M (ATG→ATT) † | yhhY → | putative acetyltransferase |
RA | 3,577,507 | C→A | 51.6% | I157I (ATC→ATA) | insB1 → | IS1 transposase B |
RA | 3,580,302 | G→T | 8.4% | intergenic (‑119/‑1) | ggt ← / → yhhA | gamma‑glutamyltranspeptidase/DUF2756 family protein |
RA | 3,584,639 | G→T | 43.1% | I349I (ATC→ATA) | ugpB ← | glycerol‑3‑phosphate transporter subunit |
RA | 3,590,930 | T→A | 18.4% | intergenic (‑10/‑414) | livK ← / → panM | leucine transporter subunit/PanD autocleavage accelerator, panothenate synthesis |
RA | 3,591,211 | C→A | 7.2% | intergenic (‑291/‑133) | livK ← / → panM | leucine transporter subunit/PanD autocleavage accelerator, panothenate synthesis |
RA | 3,594,268 | C→T | 7.7% | intergenic (‑125/+120) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/inner membrane putative ABC superfamily transporter permease |
RA | 3,598,440 | C→A | 17.1% | N34K (AAC→AAA) | yhhL → | DUF1145 family protein |
RA | 3,602,056 | T→G | 5.5% | intergenic (+47/+55) | zntA → / ← tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
RA | 3,607,110 | C→A | 6.0% | I28I (ATC→ATA) | nikA → | nickel‑binding, heme‑binding periplasmic protein |
RA | 3,609,958 | C→A | 45.0% | I139I (ATC→ATA) | nikC → | nickel transporter subunit |
RA | 3,612,284 | G→T | 9.0% | D113Y (GAT→TAT) | nikR → | transcriptional repressor, Ni‑binding |
RA | 3,612,708 | C→A | 42.6% | L53I (CTC→ATC) | rhsB → | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
RA | 3,616,947 | A→T | 11.7% | E63D (GAA→GAT) | yhhH → | putative immunity protein for putative polymorphic toxin RhsB |
RA | 3,622,058 | C→A | 5.8% | D281Y (GAT→TAT) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
RA | 3,622,863 | G→T | 37.2% | V12V (GTC→GTA) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
RA | 3,629,424 | T→A | 6.4% | intergenic (+171/+144) | yhiM → / ← yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
RA | 3,629,439 | C→A | 38.2% | intergenic (+186/+129) | yhiM → / ← yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
RA | 3,631,760 | G→T | 7.2% | M253I (ATG→ATT) | pitA → | phosphate transporter, low‑affinity; tellurite importer |
RA | 3,634,084 | C→A | 6.1% | intergenic (+179/‑138) | uspA → / → dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
RA | 3,639,239 | G→T | 6.6% | P165P (CCG→CCT) | rlmJ → | 23S rRNA m(6)A2030 methyltransferase, SAM‑dependent |
RA | 3,640,170 | C→A | 14.5% | A171E (GCG→GAG) | gor → | glutathione oxidoreductase |
RA | 3,644,531 | G→A | 5.5% | intergenic (+509/‑120) | arsC → / → yhiS | arsenate reductase/pseudogene |
RA | 3,646,984 | G→T | 6.5% | pseudogene (394/483 nt) | yhiS → | pseudogene |
RA | 3,649,637 | G→A | 38.3% | L6F (CTC→TTC) | hdeB ← | acid‑resistance protein |
RA | 3,649,797 | C→A | 5.8% | E102* (GAA→TAA) | hdeA ← | stress response protein acid‑resistance protein |
RA | 3,652,308 | G→T | 6.3% | intergenic (+55/‑284) | gadE → / → mdtE | gad regulon transcriptional activator/anaerobic multidrug efflux transporter, ArcA‑regulated |
RA | 3,652,706 | G→T | 14.4% | V39F (GTC→TTC) | mdtE → | anaerobic multidrug efflux transporter, ArcA‑regulated |
RA | 3,661,610 | A→T | 7.8% | F313L (TTT→TTA) | yhjA ← | putative cytochrome C peroxidase |
RA | 3,662,660 | T→C | 100% | intergenic (‑112/‑292) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
RA | 3,667,959 | C→A | 6.2% | intergenic (+224/‑187) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/MFS superfamily sugar transport 1 family protein |
RA | 3,667,977 | C→T | 20.8% | intergenic (+242/‑169) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/MFS superfamily sugar transport 1 family protein |
RA | 3,668,106 | G→A | 8.8% | intergenic (+371/‑40) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/MFS superfamily sugar transport 1 family protein |
RA | 3,670,418 | C→A | 20.0% | P431P (CCG→CCT) | yhjG ← | putative inner membrane‑anchored periplasmic AsmA family protein |
RA | 3,673,169 | C→A | 36.9% | L131I (CTC→ATC) | kdgK → | 2‑dehydro‑3‑deoxygluconokinase |
RA | 3,679,301 | T→G | 100% | Q1078P (CAG→CCG) | bcsC ← | cellulose synthase subunit |
RA | 3,679,324 | C→A | 94.9% | M1070I (ATG→ATT) | bcsC ← | cellulose synthase subunit |
RA | 3,680,907 | C→A | 13.1% | D543Y (GAC→TAC) | bcsC ← | cellulose synthase subunit |
RA | 3,680,910 | G→T | 100% | H542N (CAT→AAT) | bcsC ← | cellulose synthase subunit |
RA | 3,689,369 | C→A | 15.3% | A59A (GCG→GCT) | yhjR ← | DUF2629 family protein |
RA | 3,694,707 | C→A | 21.4% | S262* (TCG→TAG) | yhjV → | putative transporter |
RA | 3,698,119 | C→A | 7.9% | M1M (ATG→ATT) † | dppC ← | dipeptide/heme transporter |
RA | 3,698,875 | G→T | 86.9% | F92L (TTC→TTA) | dppB ← | dipeptide/heme transporter |
RA | 3,699,362 | C→T | 14.3% | intergenic (‑212/+96) | dppB ← / ← dppA | dipeptide/heme transporter/dipeptide transporter |
RA | 3,701,444 | G→A | 7.3% | intergenic (‑379/+532) | dppA ← / ← proK | dipeptide transporter/tRNA‑Pro |
RA | 3,708,413 | G→T | 13.3% | P448T (CCG→ACG) | bisC ← | biotin sulfoxide reductase |
RA | 3,710,665 | G→T | 13.5% | intergenic (+99/‑5) | yiaD → / → ghrB | multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B |
RA | 3,716,399 | C→A | 13.9% | A453A (GCG→GCT) | glyS ← | glycine tRNA synthetase, beta subunit |
RA | 3,717,788 | C→A | 94.7% | P297P (CCG→CCT) | glyQ ← | glycine tRNA synthetase, alpha subunit |
RA | 3,727,580 | C→A | 5.1% | A167A (GCC→GCA) | xylH → | D‑xylose ABC transporter permease subunit |
RA | 3,736,058 | C→A | 10.2% | intergenic (‑166/‑35) | yiaJ ← / → yiaK | transcriptional repressor of yiaK‑S operon/2,3‑diketo‑L‑gulonate reductase, NADH‑dependent |
RA | 3,738,431 | C→A | 100% | P90T (CCA→ACA) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
RA | 3,740,731 | G→T | 18.3% | G96G (GGG→GGT) | lyxK → | L‑xylulose kinase |
RA | 3,740,770 | C→A | 13.2% | I109I (ATC→ATA) | lyxK → | L‑xylulose kinase |
RA | 3,744,809 | C→A | 17.1% | E140D (GAG→GAT) | yiaT ← | putative outer membrane protein |
RA | 3,759,323 | C→T | 9.9% | P1261S (CCC→TCC) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
RA | 3,761,602 | G→A | 32.3% | V22V (GTG→GTA) | yibG → | TPR‑like repeat protein |
RA | 3,767,000 | G→T | 90.2% | D454Y (GAC→TAC) | mtlA → | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
RA | 3,774,427 | T→G | 12.9% | intergenic (+50/‑148) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,777,581 | T→G | 14.9% | A74A (GCA→GCC) | grxC ← | glutaredoxin 3 |
RA | 3,777,924 | C→A | 18.5% | intergenic (‑122/+20) | grxC ← / ← yibN | glutaredoxin 3/putative rhodanese‑related sulfurtransferase |
RA | 3,778,219 | C→A | 12.6% | D53Y (GAC→TAC) | yibN ← | putative rhodanese‑related sulfurtransferase |
RA | 3,779,324 | C→A | 42.8% | F235L (TTC→TTA) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
RA | 3,785,915 | G→T | 100% | intergenic (‑4/+271) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
RA | 3,797,033 | C→A | 8.1% | T155T (ACG→ACT) | waaB ← | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
RA | 3,798,296 | G→A | 11.0% | L61F (CTC→TTC) | waaS ← | lipopolysaccharide core biosynthesis protein |
RA | 3,799,108 | C→A | 47.5% | R68L (CGG→CTG) | waaP ← | kinase that phosphorylates core heptose of lipopolysaccharide |
RA | 3,799,227 | G→T | 12.8% | V28V (GTC→GTA) | waaP ← | kinase that phosphorylates core heptose of lipopolysaccharide |
RA | 3,809,236 | G→T | 5.2% | pseudogene (6/48 nt) | rph ← | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
RA | 3,810,195 | C→A | 100% | R54S (CGT→AGT) | yicC → | UPF0701 family protein |
RA | 3,815,043 | C→A | 16.9% | R86S (CGT→AGT) | gmk → | guanylate kinase |
RA | 3,816,601 | A→T | 100% | H281L (CAC→CTC) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,816,686 | G→T | 22.5% | S309S (TCG→TCT) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,818,010 | C→A | 100% | H46N (CAT→AAT) | trmH → | tRNA mG18‑2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,819,936 | C→A | 45.5% | T456K (ACG→AAG) | recG → | ATP‑dependent DNA helicase |
RA | 3,822,340 | A→C | 6.2% | Q12H (CAA→CAC) | xanP → | xanthine permease |
RA | 3,825,702 | C→A | 100% | K732N (AAG→AAT) | yicI ← | putative alpha‑glucosidase |
RA | 3,828,206 | T→A | 21.4% | S362C (AGT→TGT) | yicJ ← | putative transporter |
RA | 3,829,020 | G→T | 17.4% | F90L (TTC→TTA) | yicJ ← | putative transporter |
RA | 3,830,197 | C→A | 100% | intergenic (+281/‑116) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,830,311 | G→T | 100% | intergenic (+395/‑2) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,830,819 | T→G | 6.9% | F169L (TTT→TTG) | setC → | putative arabinose efflux transporter |
RA | 3,834,958 | G→T | 20.7% | Q48K (CAG→AAG) | nepI ← | putative transporter |
RA | 3,837,177 | C→T | 8.7% | intergenic (‑28/‑147) | yicO ← / → ade | putative adenine permease/cryptic adenine deaminase |
RA | 3,838,587 | T→A | 19.4% | S422T (TCC→ACC) | ade → | cryptic adenine deaminase |
RA | 3,839,034 | C→A | 21.5% | Q571K (CAG→AAG) | ade → | cryptic adenine deaminase |
JC | 3,841,409 | +CAACCAG | 14.9% | coding (576/1320 nt) | uhpC ← | membrane protein regulates uhpT expression |
RA | 3,846,307 | C→A | 20.8% | A14A (GCG→GCT) | ivbL ← | ilvB operon leader peptide |
RA | 3,851,275 | G→T | 19.2% | H164N (CAT→AAT) | yidJ ← | sulfatase/phosphatase superfamily protein |
RA | 3,851,696 | G→T | 8.0% | S23R (AGC→AGA) | yidJ ← | sulfatase/phosphatase superfamily protein |
RA | 3,857,220 | C→A | 11.3% | intergenic (‑257/‑39) | glvC ← / → yidP | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component/UTRA domain‑containing GntR family putative transcriptional regulator |
RA | 3,858,963 | A→T | 19.2% | V224E (GTA→GAA) | yidE ← | putative transporter |
RA | 3,860,159 | C→A | 100% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
RA | 3,860,327 | C→A | 87.8% | intergenic (‑70/+42) | ibpB ← / ← ibpA | heat shock chaperone/heat shock chaperone |
RA | 3,860,653 | C→A | 92.6% | E44* (GAA→TAA) | ibpA ← | heat shock chaperone |
RA | 3,863,438 | G→T | 5.7% | M234I (ATG→ATT) | cbrA → | colicin M resistance protein; FAD‑binding protein, putative oxidoreductase |
RA | 3,865,120 | C→A | 89.5% | intergenic (‑30/+90) | dgoT ← / ← dgoD | D‑galactonate transporter/galactonate dehydratase |
RA | 3,865,863 | T→A | 7.0% | T166S (ACC→TCC) | dgoD ← | galactonate dehydratase |
RA | 3,867,062 | C→A | 40.5% | R258L (CGC→CTC) | dgoK ← | 2‑oxo‑3‑deoxygalactonate kinase |
RA | 3,874,397 | C→A | 14.3% | R62L (CGC→CTC) | recF ← | gap repair protein |
RA | 3,879,501 | T→A | 48.8% | F356I (TTC→ATC) | yidC → | membrane protein insertase |
RA | 3,882,020 | G→T | 16.4% | intergenic (+151/‑70) | tnaC → / → tnaA | tryptophanase leader peptide/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
RA | 3,889,578 | C→A | 42.8% | R131L (CGC→CTC) | purP ← | adenine permease, high affinity; adenine:H+ symporter |
RA | 3,890,960 | T→A | 7.4% | F32Y (TTC→TAC) | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
RA | 3,891,421 | C→A | 8.7% | H14N (CAT→AAT) | cbrC → | UPF0167 family protein |
RA | 3,892,304 | C→A | 9.4% | P150P (CCG→CCT) | yieK ← | putative 6‑phosphogluconolactonase |
RA | 3,894,972 | G→T | 11.0% | G203G (GGC→GGA) | bglH ← | carbohydrate‑specific outer membrane porin, cryptic |
RA | 3,896,944 | C→A | 35.3% | V40L (GTA→TTA) | bglB ← | cryptic phospho‑beta‑glucosidase B |
RA | 3,902,909 | C→A | 12.8% | V284F (GTT→TTT) | pstC ← | phosphate transporter subunit |
RA | 3,906,384 | G→T | 7.9% | I215I (ATC→ATA) | glmS ← | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
RA | 3,910,416 | C→A | 7.1% | R107L (CGT→CTT) | atpD ← | F1 sector of membrane‑bound ATP synthase, beta subunit |
RA | 3,910,448 | G→T | 7.9% | V96V (GTC→GTA) | atpD ← | F1 sector of membrane‑bound ATP synthase, beta subunit |
RA | 3,910,487 | C→A | 12.1% | A83A (GCG→GCT) | atpD ← | F1 sector of membrane‑bound ATP synthase, beta subunit |
RA | 3,910,894 | C→A | 100% | M244I (ATG→ATT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
RA | 3,911,056 | C→A | 10.9% | P190P (CCG→CCT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
RA | 3,916,830 | C→A | 100% | D71Y (GAT→TAT) | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
RA | 3,917,554 | C→A | 6.5% | L480L (CTG→CTT) | mnmG ← | 5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
RA | 3,923,028 | C→A | 92.8% | D476Y (GAC→TAC) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
RA | 3,923,775 | G→T | 8.8% | H227N (CAT→AAT) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
RA | 3,926,831 | G→T | 92.1% | D41Y (GAT→TAT) | rbsD → | putative cytoplasmic sugar‑binding protein |
RA | 3,927,972 | G→T | 93.2% | E279* (GAA→TAA) | rbsA → | fused D‑ribose transporter subunits of ABC superfamily: ATP‑binding components |
RA | 3,933,204 | C→T | 5.3% | D257N (GAT→AAT) | hsrA ← | putative multidrug or homocysteine efflux system |
RA | 3,933,680 | G→T | 15.2% | S98* (TCG→TAG) | hsrA ← | putative multidrug or homocysteine efflux system |
RA | 3,934,476 | G→T | 9.7% | P71Q (CCG→CAG) | yieP ← | putative transcriptional regulator |
RA | 3,935,100 | G→T | 90.2% | intergenic (‑413/‑68) | yieP ← / → rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
RA | 3,940,333 | T→A | 15.6% | noncoding (17/76 nt) | trpT → | tRNA‑Trp |
RA | 3,945,503 | A→T | 53.1% | pseudogene (602/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
RA | 3,945,552 | G→T | 6.7% | pseudogene (651/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
RA | 3,946,072 | G→T | 12.1% | D77Y (GAT→TAT) | ilvE → | branched‑chain amino‑acid aminotransferase |
RA | 3,948,854 | G→T | 10.3% | R55L (CGC→CTC) | ilvA → | L‑threonine dehydratase, biosynthetic; also known as threonine deaminase |
RA | 3,952,817 | T→G | 5.4% | intergenic (+12/+75) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
RA | 3,956,165 | C→A | 44.4% | E475D (GAG→GAT) | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
RA | 3,960,036 | G→A | 100% | R87H (CGC→CAC) | rho → | transcription termination factor |
RA | 3,966,854 | C→A | 100% | R325S (CGT→AGT) | rffG → | dTDP‑glucose 4,6‑dehydratase |
RA | 3,967,474 | G→T | 92.7% | A169A (GCG→GCT) | rffH → | glucose‑1‑phosphate thymidylyltransferase |
RA | 3,968,673 | C→A | 9.4% | T56T (ACC→ACA) | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
RA | 3,968,711 | A→T | 10.5% | Q69L (CAG→CTG) | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
RA | 3,969,710 | G→T | 94.5% | G25C (GGT→TGT) | wzxE → | O‑antigen translocase |
RA | 3,972,296 | G→T | 9.7% | E112D (GAG→GAT) | wzyE → | putative ECA polysaccharide chain elongation protein |
RA | 3,977,650 | A→T | 48.7% | intergenic (+97/+62) | aslB → / ← aslA | putative AslA‑specific sulfatase‑maturating enzyme/putative Ser‑type periplasmic non‑aryl sulfatase |
RA | 3,978,003 | C→A | 37.7% | E455D (GAG→GAT) | aslA ← | putative Ser‑type periplasmic non‑aryl sulfatase |
RA | 3,978,810 | G→T | 43.3% | I186I (ATC→ATA) | aslA ← | putative Ser‑type periplasmic non‑aryl sulfatase |
RA | 3,984,342 | G→T | 16.6% | intergenic (‑216/‑171) | hemC ← / → cyaA | hydroxymethylbilane synthase/adenylate cyclase |
RA | 3,987,104 | G→T | 8.4% | R106S (CGC→AGC) | cyaY ← | iron‑dependent inhibitor of iron‑sulfur cluster formation; frataxin; iron‑binding and oxidizing protein |
RA | 3,988,075 | T→A | 100% | V65E (GTG→GAG) | yifL → | putative lipoprotein |
RA | 3,990,572 | C→A | 38.8% | I10I (ATC→ATA) | yigB → | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis |
RA | 3,994,076 | A→T | 100% | L114* (TTA→TAA) | yigE ← | DUF2233 family protein |
RA | 3,994,247 | A→T | 100% | V57E (GTG→GAG) | yigE ← | DUF2233 family protein |
RA | 3,994,758 | G→T | 14.8% | intergenic (‑342/‑28) | yigE ← / → corA | DUF2233 family protein/magnesium/nickel/cobalt transporter |
RA | 3,996,070 | G→T | 11.8% | F30L (TTC→TTA) | yigF ← | putative inner membrane protein |
RA | 3,996,346 | T→A | 6.3% | I70F (ATC→TTC) | yigG ← | PRK11371 family inner membrane protein |
RA | 3,997,144 | G→T | 16.2% | A132E (GCG→GAG) | rarD ← | putative chloramphenical resistance permease |
RA | 3,999,692 | G→T | 12.8% | D157Y (GAT→TAT) | recQ → | ATP‑dependent DNA helicase |
RA | 4,001,030 | G→T | 5.6% | V603F (GTT→TTT) | recQ → | ATP‑dependent DNA helicase |
RA | 4,009,705 | G→A | 100% | intergenic (‑176/‑86) | ysgA ← / → udp | putative carboxymethylenebutenolidase/uridine phosphorylase |
RA | 4,011,961 | G→T | 12.1% | A423A (GCG→GCT) | rmuC → | DNA recombination protein |
RA | 4,023,757 | T→A | 20.0% | K192I (AAA→ATA) | fadB ← | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 4,024,233 | A→C | 16.4% | T33T (ACT→ACG) | fadB ← | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 4,024,827 | G→T | 92.1% | D103Y (GAT→TAT) | pepQ → | proline dipeptidase |
RA | 4,035,421 | G→T | 94.0% | intergenic (‑62/‑8) | mobA ← / → yihD | molybdopterin‑guanine dinucleotide synthase/DUF1040 protein YihD |
RA | 4,037,484 | T→A | 6.4% | intergenic (+80/‑75) | dsbA → / → yihF | periplasmic protein disulfide isomerase I/DUF945 family protein |
RA | 4,041,798 | C→A | 40.2% | L491L (CTC→CTA) | polA → | fused DNA polymerase I 5'‑>3' polymerase/3'‑>5' exonuclease/5'‑>3' exonuclease |
RA | 4,046,172 | A→T | 93.2% | K256N (AAA→AAT) | hemN → | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
RA | 4,050,102 | G→T | 9.4% | A431A (GCC→GCA) | glnA ← | glutamine synthetase |
RA | 4,054,222 | T→A | 18.2% | V139D (GTT→GAT) | yihL → | putative DNA‑binding transcriptional regulator |
RA | 4,056,018 | T→A | 100% | F138I (TTC→ATC) | yihN → | MFS transporter family protein |
RA | 4,058,809 | G→T | 10.1% | I106I (ATC→ATA) | yihO ← | putative transporter |
RA | 4,062,424 | G→T | 100% | I71I (ATC→ATA) | yihQ ← | alpha‑glucosidase |
RA | 4,066,133 | T→G | 100% | S267R (AGC→CGC) | yihU ← | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
RA | 4,068,208 | C→A | 100% | G60G (GGC→GGA) | yihW → | DeoR family putative transcriptional regulator |
RA | 4,077,665 | G→T | 44.7% | V506V (GTC→GTA) | fdoG ← | formate dehydrogenase‑O, large subunit |
RA | 4,078,761 | C→A | 13.1% | R141L (CGC→CTC) | fdoG ← | formate dehydrogenase‑O, large subunit |
RA | 4,086,370 | G→T | 9.8% | intergenic (‑187/+114) | frvA ← / ← rhaM | putative enzyme IIA component of PTS/L‑rhamnose mutarotase |
RA | 4,087,476 | A→T | 48.9% | intergenic (‑126/‑188) | rhaD ← / → rhaS | pseudogene, truncated, rhamnulose‑phosphate aldolase/transcriptional activator of rhaBAD and rhaT |
RA | 4,087,754 | C→A | 41.7% | H31N (CAT→AAT) | rhaS → | transcriptional activator of rhaBAD and rhaT |
RA | 4,087,772 | G→T | 13.4% | E37* (GAA→TAA) | rhaS → | transcriptional activator of rhaBAD and rhaT |
RA | 4,088,850 | C→A | 6.6% | R93S (CGT→AGT) | rhaR → | transcriptional activator of rhaSR |
RA | 4,094,362 | C→A | 100% | W181L (TGG→TTG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
RA | 4,095,124 | C→T | 41.6% | G159S (GGT→AGT) | cpxR ← | response regulator in two‑component regulatory system with CpxA |
RA | 4,097,282 | C→A | 43.9% | R296R (CGG→AGG) | fieF → | ferrous iron and zinc transporter |
RA | 4,097,822 | G→T | 100% | E115* (GAA→TAA) | pfkA → | 6‑phosphofructokinase I |
RA | 4,122,248 | A→T | 92.3% | intergenic (+53/‑296) | metL → / → metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase |
RA | 4,122,781 | C→A | 31.5% | R80S (CGC→AGC) | metF → | 5,10‑methylenetetrahydrofolate reductase |
RA | 4,125,407 | C→A | 6.3% | H549N (CAT→AAT) | katG → | catalase‑peroxidase HPI, heme b‑containing |
RA | 4,127,022 | T→G | 100% | E188D (GAA→GAC) | yijF ← | DUF1287 family protein |
RA | 4,128,613 | G→T | 11.0% | I117I (ATC→ATA) | gldA ← | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
RA | 4,131,163 | C→A | 8.9% | T329T (ACG→ACT) | frwA ← | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component |
RA | 4,134,111 | G→T | 42.9% | L63L (CTG→CTT) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
RA | 4,143,375 | A→G | 8.1% | intergenic (‑349/+249) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
RA | 4,144,163 | C→A | 11.9% | A205S (GCT→TCT) | argE ← | acetylornithine deacetylase |
RA | 4,145,195 | G→T | 48.4% | A89A (GCG→GCT) | argC → | N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding |
RA | 4,150,054 | G→T | 6.5% | S222Y (TCT→TAT) | sthA ← | pyridine nucleotide transhydrogenase, soluble |
RA | 4,150,197 | G→T | 19.8% | H174Q (CAC→CAA) | sthA ← | pyridine nucleotide transhydrogenase, soluble |
RA | 4,172,414 | C→A | 6.3% | I414I (ATC→ATA) | rpoB → | RNA polymerase, beta subunit |
RA | 4,173,059 | C→A | 40.6% | F629L (TTC→TTA) | rpoB → | RNA polymerase, beta subunit |
RA | 4,173,145 | A→T | 91.7% | Q658L (CAG→CTG) | rpoB → | RNA polymerase, beta subunit |
RA | 4,173,179 | G→T | 7.9% | P669P (CCG→CCT) | rpoB → | RNA polymerase, beta subunit |
RA | 4,176,823 | G→T | 100% | D516Y (GAC→TAC) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,178,969 | G→T | 9.5% | R1231L (CGT→CTT) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,179,520 | C→A | 5.2% | intergenic (+19/‑194) | rpoC → / → yjaZ | RNA polymerase, beta prime subunit/stationary phase growth adaptation protein |
RA | 4,183,071 | G→T | 12.8% | P145Q (CCG→CAG) | thiF ← | adenylyltransferase, modifies ThiS C‑terminus |
RA | 4,186,367 | G→T | 43.3% | Q124K (CAA→AAA) | rsd ← | stationary phase protein, binds sigma 70 RNA polymerase subunit |
RA | 4,189,766 | C→A | 11.9% | T112K (ACG→AAG) | yjaG → | DUF416 domain protein |
RA | 4,193,578 | G→T | 6.3% | D111Y (GAT→TAT) | zraR → | fused DNA‑binding response regulator in two‑component regulatory system with ZraS: response regulator/sigma54 interaction protein |
RA | 4,195,623 | G→T | 10.0% | G79G (GGC→GGA) | purD ← | phosphoribosylglycinamide synthetase phosphoribosylamine‑glycine ligase |
RA | 4,207,552 | G→T | 91.1% | M172I (ATG→ATT) | aceA → | isocitrate lyase |
RA | 4,208,942 | C→A | 18.2% | A140E (GCG→GAG) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
RA | 4,208,975 | C→A | 12.3% | S151Y (TCT→TAT) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
RA | 4,210,835 | G→C | 14.3% | C527W (TGC→TGG) | arpA ← | ankyrin repeat protein |
RA | 4,211,576 | G→T | 100% | S280R (AGC→AGA) | arpA ← | ankyrin repeat protein |
RA | 4,211,803 | G→A | 100% | P205S (CCT→TCT) | arpA ← | ankyrin repeat protein |
RA | 4,214,392 | G→T | 8.0% | G213C (GGC→TGC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
RA | 4,214,563 | A→T | 91.8% | T270S (ACC→TCC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
RA | 4,215,252 | G→T | 9.4% | E499D (GAG→GAT) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
RA | 4,217,818 | G→T | 18.2% | V54F (GTT→TTT) | yjbB → | putative Na+/Pi‑cotransporter |
RA | 4,219,550 | C→A | 7.8% | R174L (CGT→CTT) | pepE ← | (alpha)‑aspartyl dipeptidase |
RA | 4,222,149 | G→T | 16.7% | S338* (TCG→TAG) | lysC ← | lysine‑sensitive aspartokinase 3 |
RA | 4,225,841 | A→C | 7.8% | K3T (AAA→ACA) | yjbE → | extracellular polysaccharide production threonine‑rich protein |
RA | 4,230,913 | A→T | 100% | W424R (TGG→AGG) | xylE ← | D‑xylose transporter |
RA | 4,235,869 | G→T | 90.5% | A160E (GCG→GAG) | malE ← | maltose transporter subunit |
RA | 4,236,666 | C→A | 5.5% | intergenic (‑319/‑46) | malE ← / → malK | maltose transporter subunit/fused maltose transport subunit, ATP‑binding component of ABC superfamily/regulatory protein |
RA | 4,242,509 | C→T | 93.0% | L26F (CTC→TTC) | ubiC → | chorismate‑‑pyruvate lyase |
RA | 4,245,537 | G→T | 6.0% | N286K (AAC→AAA) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
RA | 4,247,427 | G→T | 44.5% | D129Y (GAC→TAC) | lexA → | transcriptional repressor of SOS regulon |
RA | 4,256,589 | G→T | 15.9% | E294* (GAA→TAA) | alr → | alanine racemase, biosynthetic, PLP‑binding |
RA | 4,257,593 | C→T | 11.8% | N184N (AAC→AAT) | tyrB → | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
RA | 4,258,418 | G→A | 19.9% | intergenic (+183/+319) | tyrB → / ← yjbS | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent/uncharacterized protein |
RA | 4,259,065 | C→A | 25.3% | intergenic (‑125/‑277) | yjbS ← / → aphA | uncharacterized protein/acid phosphatase/phosphotransferase, class B, non‑specific |
RA | 4,265,064 | C→A | 100% | intergenic (‑95/‑335) | yjcB ← / → yjcC | putative inner membrane protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,265,415 | G→T | 15.9% | R6L (CGA→CTA) | yjcC → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,266,665 | G→T | 19.0% | D423Y (GAT→TAT) | yjcC → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,270,316 | G→T | 19.0% | E137* (GAA→TAA) | yjcE → | putative cation/proton antiporter |
RA | 4,274,748 | C→A | 18.0% | R28L (CGC→CTC) | actP ← | acetate transporter |
RA | 4,274,926 | A→C | 100% | I72M (ATT→ATG) | yjcH ← | DUF485 family inner membrane protein |
RA | 4,275,142 | C→A | 93.0% | intergenic (‑1/+199) | yjcH ← / ← acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase |
RA | 4,275,862 | C→A | 5.6% | D480Y (GAT→TAT) | acs ← | acetyl‑CoA synthetase |
RA | 4,276,940 | G→T | 22.2% | F120L (TTC→TTA) | acs ← | acetyl‑CoA synthetase |
RA | 4,277,386 | G→T | 11.0% | intergenic (‑87/‑306) | acs ← / → nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
RA | 4,281,581 | G→T | 20.1% | D48Y (GAT→TAT) | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
RA | 4,285,213 | G→T | 46.1% | D269Y (GAT→TAT) | gltP → | glutamate/aspartate:proton symporter |
RA | 4,286,311 | C→A | 38.6% | S211I (AGC→ATC) | yjcO ← | Sel1 family TPR‑like repeat protein |
RA | 4,288,086 | G→T | 8.0% | F366L (TTC→TTA) | fdhF ← | formate dehydrogenase‑H, selenopolypeptide subunit |
RA | 4,290,080 | G→T | 100% | I256I (ATC→ATA) | mdtP ← | outer membrane factor of efflux pump |
RA | 4,294,402 | C→T | 14.7% | intergenic (‑182/+27) | ytcA ← / ← yjcS | putative inner membrane DUF1656 family protein; efflux pump associated/metallo‑beta‑lactamase superfamily protein |
RA | 4,297,485 | G→C | 90.6% | G44G (GGC→GGG) | alsK ← | D‑allose kinase |
RA | 4,297,846 | C→A | 100% | M150I (ATG→ATT) | alsE ← | allulose‑6‑phosphate 3‑epimerase |
RA | 4,301,569 | G→T | 47.0% | V97V (GTC→GTA) | alsB ← | D‑allose transporter subunit |
RA | 4,303,358 | G→T | 47.7% | L64F (TTG→TTT) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
RA | 4,303,614 | T→A | 100% | *150R (TGA→AGA) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
RA | 4,303,617 | G→T | 5.8% | intergenic (+1/‑68) | rpiB → / → yjdP | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase/putative periplasmic protein |
RA | 4,316,794 | G→A | 33.9% | intergenic (‑243/‑158) | yjdM ← / → crfC | zinc‑ribbon family protein/clamp‑binding sister replication fork colocalization protein, dynamin‑related |
RA | 4,317,243 | C→A | 12.8% | R98S (CGT→AGT) | crfC → | clamp‑binding sister replication fork colocalization protein, dynamin‑related |
RA | 4,318,517 | A→T | 7.1% | T522T (ACA→ACT) | crfC → | clamp‑binding sister replication fork colocalization protein, dynamin‑related |
RA | 4,329,774 | C→A | 8.7% | D189Y (GAC→TAC) | adiA ← | arginine decarboxylase |
RA | 4,330,426 | Δ1 bp | 100% | intergenic (‑88/+111) | adiA ← / ← melR | arginine decarboxylase/melibiose operon transcriptional regulator; autoregulator |
RA | 4,333,400 | G→T | 42.2% | R72L (CGA→CTA) | melB → | melibiose:sodium symporter |
RA | 4,335,003 | A→T | 16.9% | Y125N (TAC→AAC) | yjdF ← | DUF2238 family inner membrane protein |
RA | 4,336,196 | G→T | 39.0% | V316V (GTC→GTA) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
RA | 4,337,717 | G→T | 46.9% | A282E (GCG→GAG) | dcuB ← | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor |
RA | 4,341,023 | A→T | 100% | Y153N (TAC→AAC) | dcuS ← | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
RA | 4,346,015 | G→T | 43.9% | L72I (CTC→ATC) | dtpC ← | dipeptide and tripeptide permease |
RA | 4,346,500 | G→T | 11.2% | N645K (AAC→AAA) | cadA ← | lysine decarboxylase, acid‑inducible |
RA | 4,355,939 | C→A | 14.2% | E218* (GAA→TAA) | dcuA ← | C4‑dicarboxylate antiporter |
RA | 4,357,095 | A→C | 47.2% | V350V (GTT→GTG) | aspA ← | aspartate ammonia‑lyase |
RA | 4,358,920 | G→T | 87.7% | R147L (CGC→CTC) | fxsA → | suppressor of F exclusion of phage T7 |
RA | 4,358,943 | G→T | 5.0% | D155Y (GAT→TAT) | fxsA → | suppressor of F exclusion of phage T7 |
RA | 4,373,522 | C→T | 14.8% | intergenic (+85/‑134) | epmA → / → yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter |
RA | 4,373,880 | G→T | 9.8% | M75I (ATG→ATT) | yjeM → | putative transporter |
RA | 4,376,178 | C→A | 90.5% | E1004* (GAA→TAA) | mscM ← | mechanosensitive channel protein, miniconductance |
RA | 4,378,778 | G→T | 100% | S137* (TCG→TAG) | mscM ← | mechanosensitive channel protein, miniconductance |
RA | 4,381,462 | G→A | 11.6% | E14E (GAG→GAA) | orn → | oligoribonuclease |
RA | 4,382,218 | C→A | 6.0% | noncoding (42/76 nt) | glyV → | tRNA‑Gly |
RA | 4,388,902 | G→T | 100% | A558A (GCG→GCT) | mutL → | methyl‑directed mismatch repair protein |
RA | 4,394,391 | G→T | 6.0% | T63T (ACG→ACT) | yjeT → | DUF2065 family protein |
RA | 4,394,875 | G→T | 91.4% | A124A (GCG→GCT) | purA → | adenylosuccinate synthetase |
RA | 4,396,598 | A→T | 100% | E43V (GAA→GTA) | rnr → | exoribonuclease R, RNase R |
RA | 4,399,304 | C→A | 13.9% | I71I (ATC→ATA) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
RA | 4,401,343 | A→T | 18.7% | S75S (TCA→TCT) | yjfK → | DUF2491 family protein |
RA | 4,402,105 | A→T | 15.9% | I104F (ATT→TTT) | yjfL → | UPF0719 family inner membrane protein |
RA | 4,402,850 | G→T | 89.6% | L2L (CTG→CTT) | yjfC → | ATP‑Grasp family ATPase |
RA | 4,404,169 | G→T | 5.4% | A26A (GCG→GCT) | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
RA | 4,405,730 | G→T | 8.3% | intergenic (+13/+104) | aidB → / ← yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein |
RA | 4,407,017 | C→T | 12.9% | I83I (ATC→ATT) | yjfP → | acyl CoA esterase |
RA | 4,408,612 | C→A | 15.4% | V277V (GTG→GTT) | ulaG ← | L‑ascorbate 6‑phosphate lactonase |
RA | 4,412,786 | G→T | 5.8% | E42* (GAA→TAA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
RA | 4,416,344 | G→T | 7.3% | A140A (GCG→GCT) | rplI → | 50S ribosomal subunit protein L9 |
RA | 4,417,551 | A→C | 100% | pseudogene (41/402 nt) | ytfA → | pseudogene, related to transcriptional regulators |
RA | 4,419,557 | C→T | 11.7% | intergenic (+185/‑124) | fklB → / → cycA | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)/D‑alanine/D‑serine/glycine transporter |
RA | 4,421,791 | G→T | 12.9% | R4S (CGC→AGC) | ytfE ← | iron‑sulfur cluster repair protein RIC |
RA | 4,427,647 | G→A | 100% | D42N (GAT→AAT) | ytfI → | uncharacterized protein |
RA | 4,428,092 | G→T | 92.7% | G190V (GGA→GTA) | ytfI → | uncharacterized protein |
RA | 4,432,031 | G→A | 5.1% | intergenic (‑38/‑168) | msrA ← / → tamA | methionine sulfoxide reductase A/translocation and assembly module for autotransporter export, outer membrane subunit |
RA | 4,442,839 | C→A | 14.0% | A151E (GCG→GAG) | ytfT → | inner membrane putative ABC superfamily sugar transporter permease |
RA | 4,449,002 | C→A | 15.7% | I409I (ATC→ATA) | pmbA → | putative antibiotic peptide MccB17 maturation peptidase |
RA | 4,456,233 | G→T | 5.5% | I277I (ATC→ATA) | treR ← | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
RA | 4,457,499 | C→A | 5.1% | R20S (CGT→AGT) | mgtA → | magnesium transporter |
RA | 4,458,254 | T→A | 100% | V271V (GTT→GTA) | mgtA → | magnesium transporter |
RA | 4,458,609 | G→T | 100% | D390Y (GAT→TAT) | mgtA → | magnesium transporter |
RA | 4,458,948 | G→T | 5.2% | D503Y (GAT→TAT) | mgtA → | magnesium transporter |
RA | 4,461,317 | G→T | 17.0% | A299E (GCG→GAG) | pyrB ← | aspartate carbamoyltransferase, catalytic subunit |
RA | 4,464,061 | G→T | 7.2% | E41* (GAA→TAA) | bdcR → | transcriptional repressor for divergent bdcA |
RA | 4,465,836 | C→T | 12.2% | L195L (CTA→TTA) | yjgL → | uncharacterized protein |
RA | 4,465,936 | T→A | 7.5% | L228* (TTA→TAA) | yjgL → | uncharacterized protein |
RA | 4,466,511 | G→T | 9.9% | A420S (GCT→TCT) | yjgL → | uncharacterized protein |
RA | 4,468,165 | A→G | 94.9% | intergenic (‑37/‑125) | argI ← / → rraB | ornithine carbamoyltransferase 1/protein inhibitor of RNase E |
RA | 4,469,532 | A→G | 8.9% | intergenic (‑178/‑15) | yjgM ← / → yjgN | putative acetyltransferase/DUF898 family inner membrane protein |
RA | 4,469,550 | G→A | 100% | A2T (GCT→ACT) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,017 | G→A | 100% | M157I (ATG→ATA) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,873 | G→T | 91.8% | R928S (CGT→AGT) | valS ← | valyl‑tRNA synthetase |
RA | 4,471,930 | T→A | 9.3% | P575P (CCA→CCT) | valS ← | valyl‑tRNA synthetase |
RA | 4,474,726 | A→T | 6.7% | V348E (GTG→GAG) | pepA ← | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
RA | 4,474,993 | G→T | 41.7% | S259* (TCG→TAG) | pepA ← | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
RA | 4,475,510 | G→T | 12.0% | R87S (CGT→AGT) | pepA ← | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
RA | 4,481,791 | C→A | 7.0% | P184P (CCG→CCT) | idnT ← | L‑idonate and D‑gluconate transporter |
RA | 4,482,573 | A→T | 14.9% | L199Q (CTG→CAG) | idnO ← | 5‑keto‑D‑gluconate‑5‑reductase |
RA | 4,494,721 | G→A | 91.9% | A283T (GCC→ACC) | yjhB → | putative transporter |
RA | 4,494,928 | G→T | 10.0% | A352S (GCA→TCA) | yjhB → | putative transporter |
RA | 4,495,349 | G→T | 46.5% | K82N (AAG→AAT) | yjhC → | putative oxidoreductase |
RA | 4,495,859 | T→G | 6.8% | D252E (GAT→GAG) | yjhC → | putative oxidoreductase |
RA | 4,505,141 | G→T | 5.3% | R452S (CGT→AGT) | fecA ← | ferric citrate outer membrane transporter |
RA | 4,507,551 | G→T | 6.1% | R168S (CGT→AGT) | fecI ← | RNA polymerase, sigma 19 factor |
RA | 4,510,255 | G→T | 17.1% | intergenic (‑114/+233) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
RA | 4,512,693 | T→A | 100% | K407* (AAG→TAG) | yjhG ← | putative dehydratase |
RA | 4,514,180 | A→T | 11.5% | A216A (GCT→GCA) | yjhH ← | putative lyase/synthase |
RA | 4,516,177 | C→A | 42.6% | D177Y (GAT→TAT) | sgcR ← | putative DNA‑binding transcriptional regulator |
RA | 4,519,217 | A→T | 14.2% | F282I (TTC→ATC) | sgcC ← | putative PTS system EIIC permease component |
RA | 4,520,701 | G→T | 6.2% | G256G (GGC→GGA) | sgcX ← | putative endoglucanase with Zn‑dependent exopeptidase domain |
RA | 4,522,074 | T→A | 40.9% | pseudogene (54/261 nt) | yjhY ← | pseudogene, zinc finger protein family |
RA | 4,523,001 | T→A | 87.4% | intergenic (‑1/+55) | yjhP ← / ← yjhQ | putative methyltransferase/putative acetyltransferase |
RA | 4,525,234 | G→A | 100% | pseudogene (415/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
RA | 4,525,278 | G→T | 13.5% | pseudogene (459/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
RA | 4,531,143 | A→T | 100% | I124F (ATT→TTT) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,531,461 | G→A | 45.8% | intergenic (+85/‑393) | fimB → / → fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,535,507 | C→A | 46.7% | R199R (CGG→AGG) | fimD → | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
RA | 4,535,723 | G→T | 10.9% | D271Y (GAT→TAT) | fimD → | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
RA | 4,541,449 | A→T | 92.9% | intergenic (‑336/‑4) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
RA | 4,555,156 | G→T | 100% | A171E (GCG→GAG) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
RA | 4,555,620 | T→G | 15.7% | E16D (GAA→GAC) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
RA | 4,559,831 | G→T | 39.6% | intergenic (+96/+148) | yjiP → / ← yjiR | pseudogene, transposase_31 family protein/putative DNA‑binding transcriptional regulator/putative aminotransferase |
RA | 4,562,043 | C→A | 100% | intergenic (+311/‑188) | yjiS → / → yjiT | DUF1127 family protein/pseudogene |
RA | 4,564,939 | G→T | 14.1% | pseudogene (1204/2937 nt) | yjiV → | pseudogene; conserved hypothetical protein |
RA | 4,567,114 | G→A | 13.8% | S221F (TCT→TTT) | mcrC ← | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
RA | 4,567,278 | G→T | 5.6% | I166I (ATC→ATA) | mcrC ← | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
RA | 4,567,552 | C→A | 14.7% | R75L (CGA→CTA) | mcrC ← | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
RA | 4,571,233 | G→A | 93.7% | S16F (TCT→TTT) | hsdS ← | specificity determinant for hsdM and hsdR |
RA | 4,572,227 | G→T | 17.9% | I213I (ATC→ATA) | hsdM ← | DNA methyltransferase M |
RA | 4,572,520 | A→T | 5.9% | Y116N (TAC→AAC) | hsdM ← | DNA methyltransferase M |
RA | 4,572,800 | A→T | 45.2% | V22V (GTT→GTA) | hsdM ← | DNA methyltransferase M |
RA | 4,575,640 | C→A | 7.4% | pseudogene (993/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
RA | 4,584,255 | A→C | 9.0% | L95L (CTT→CTG) | yjjL ← | L‑galactonate transporter |
RA | 4,584,381 | G→T | 100% | I53I (ATC→ATA) | yjjL ← | L‑galactonate transporter |
RA | 4,584,756 | A→T | 93.3% | *305K (TAA→AAA) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,585,338 | A→T | 93.6% | S111T (TCT→ACT) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,586,074 | G→T | 5.1% | V90F (GTT→TTT) | yjjN → | L‑galactonate oxidoreductase |
RA | 4,586,139 | C→A | 40.1% | V111V (GTC→GTA) | yjjN → | L‑galactonate oxidoreductase |
RA | 4,586,861 | G→T | 16.7% | intergenic (+32/+106) | yjjN → / ← opgB | L‑galactonate oxidoreductase/phosphoglycerol transferases I and II |
RA | 4,588,180 | G→T | 7.0% | S360* (TCA→TAA) | opgB ← | phosphoglycerol transferases I and II |
RA | 4,591,139 | C→A | 89.2% | D66Y (GAT→TAT) | dnaT ← | DNA biosynthesis protein (primosomal protein I) |
RA | 4,593,513 | T→G | 46.5% | Y74D (TAT→GAT) | yjjQ → | putative transcriptional regulator |
RA | 4,596,008 | C→A | 46.2% | intergenic (‑26/+9) | leuV ← / ← leuP | tRNA‑Leu/tRNA‑Leu |
RA | 4,596,243 | T→A | 91.9% | intergenic (‑25/+243) | leuQ ← / ← rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
RA | 4,602,307 | T→A | 46.9% | L27Q (CTG→CAG) | yjjU → | putative patatin‑like family phospholipase |
RA | 4,604,139 | A→T | 5.4% | intergenic (+62/+358) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
RA | 4,604,195 | A→G | 6.4% | intergenic (+118/+302) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
RA | 4,604,320 | T→C | 6.3% | intergenic (+243/+177) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
RA | 4,612,781 | C→A | 19.7% | A399E (GCG→GAG) | yjjJ → | putative protein kinase |
RA | 4,616,323 | G→T | 38.3% | E199* (GAA→TAA) | radA → | DNA repair protein |
RA | 4,617,009 | G→T | 19.5% | A427A (GCG→GCT) | radA → | DNA repair protein |
RA | 4,617,366 | G→T | 14.7% | G79* (GGA→TGA) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
RA | 4,625,288 | T→C | 94.5% | intergenic (‑161/‑50) | rob ← / → creA | right oriC‑binding transcriptional activator, AraC family/putative periplasmic protein |
RA | 4,629,872 | G→T | 8.4% | D84E (GAC→GAA) | arcA ← | response regulator in two‑component regulatory system with ArcB or CpxA |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP009273 | 373844 | 375149 | 1306 | 183 [180] | [179] 181 | frmA–[frmR] | frmA,[frmR] |
* | * | ÷ | CP009273 | 4100584 | 4101519 | 936 | 183 [179] | [178] 182 | [cdh]–tpiA | [cdh],tpiA |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 360104 = | 213 (0.810) | 224 (0.850) | 130/278 | NT | 51.3% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
* | ? | CP009273 | = 360278 | NA (NA) | 8413 (34.050) +TTAATTAA |
195/262 | NT | 97.6% | intergenic (‑212/+383) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 361823 | 222 (0.850) | coding (831/834 nt) | mhpR | mhp operon transcriptional activator | |||||
* | ? | CP009273 | 360652 = | 277 (1.060) | 8441 (48.270) +46 bp |
186/186 | NT | 98.0% | intergenic (‑586/+9) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 1317577 | 246 (0.940) | coding (101/882 nt) | yciV | PHP domain protein | |||||
* | ? | CP009273 | 376716 = | NA (NA) | 247 (0.940) | 128/278 | NT | 98.0% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
? | CP009273 | 566411 = | 5 (0.020) | coding (63/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | = 378046 | NA (NA) | 266 (1.010) | 143/278 | NT | 98.2% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
? | CP009273 | = 566415 | 5 (0.020) | coding (67/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | 776825 = | 155 (0.590) | 23 (0.090) +G |
12/276 | NT | 12.1% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
? | CP009273 | = 2514488 | 182 (0.690) | noncoding (216/1345 nt) | IS186 | repeat region | |||||
* | ? | CP009273 | 1203246 = | 13 (0.050) | 7 (0.030) | 5/246 | NT | 30.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | 1205075 = | 20 (0.090) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 1203261 | 16 (0.060) | 8 (0.030) | 6/246 | NT | 31.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | = 1205058 | 20 (0.090) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | 1635219 = | 10 (0.040) | 260 (1.010) | 138/274 | NT | 96.3% | intergenic (‑377/+377) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
* | ? | CP009273 | = 1635223 | 10 (0.040) | 215 (0.820) | 128/278 | NT | 95.6% | intergenic (‑381/+373) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 1645805 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 2811301 | 186 (0.710) | 10 (0.040) | 8/238 | NT | 5.9% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
? | CP009273 | 2811851 = | 160 (0.710) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
* | ? | CP009273 | = 3180783 | NA (NA) | 266 (1.030) | 139/274 | NT | 90.0% | pseudogene (4/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
? | CP009273 | = 3833569 | 30 (0.110) | intergenic (‑216/‑6) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein | |||||
* | ? | CP009273 | 3744959 = | 265 (1.010) | 526 (2.010) | 198/278 | NT | 67.6% | coding (270/741 nt) | yiaT | putative outer membrane protein |
? | CP009273 | = 3752673 | 240 (0.910) | coding (549/1845 nt) | selB | selenocysteinyl‑tRNA‑specific translation factor | |||||
* | ? | CP009273 | 3833562 = | 27 (0.100) | 189 (0.730) | 116/276 | NT | 87.6% | intergenic (‑209/‑13) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein |
? | CP009273 | 4487999 = | NA (NA) | intergenic (+242/‑90) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
* | ? | CP009273 | 3920822 = | 207 (0.790) | 71 (0.270) | 50/278 | NT | 23.2% | coding (308/993 nt) | asnA | asparagine synthetase A |
? | CP009273 | = 3921005 | 264 (1.010) | coding (491/993 nt) | asnA | asparagine synthetase A |