breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 70,434 C→T 79.5% N16N (AAC→AAT)  araC → DNA‑binding transcriptional dual regulator
RA 70,581 C→T 77.9% V65V (GTC→GTT)  araC → DNA‑binding transcriptional dual regulator
RA 70,740 T→G 81.1% G118G (GGT→GGG)  araC → DNA‑binding transcriptional dual regulator
RA 71,079 C→T 77.3% R231R (CGC→CGT)  araC → DNA‑binding transcriptional dual regulator
RA 71,082 T→C 76.8% I232I (ATT→ATC)  araC → DNA‑binding transcriptional dual regulator
RA 71,085 T→C 73.8% S233S (AGT→AGC)  araC → DNA‑binding transcriptional dual regulator
RA 71,109 T→C 75.2% T241T (ACT→ACC)  araC → DNA‑binding transcriptional dual regulator
RA 71,175 A→G 77.0% R263R (CGA→CGG)  araC → DNA‑binding transcriptional dual regulator
RA 71,214 T→C 70.6% F276F (TTT→TTC)  araC → DNA‑binding transcriptional dual regulator
RA 75,753 A→C 5.6% L516W (TTG→TGG)  sgrR ← DNA‑binding transcriptional regulator
RA 75,756 A→T 5.7% L515* (TTA→TAA)  sgrR ← DNA‑binding transcriptional regulator
RA 143,730 A→G 8.1% K10R (AAA→AGA)  yadH → predicted transporter subunit
RA 155,463 A→T 100% *247K (TAA→AAA)  ecpD ← predicted periplasmic pilin chaperone
RA 184,000 G→T 5.4% I32I (ATC→ATA)  yaeH ← conserved hypothetical protein
RA 197,387 G→C 5.2% S281T (AGT→ACT)  yaeL → zinc metallopeptidase
RA 197,392 T→C 5.0% L283L (TTG→CTG)  yaeL → zinc metallopeptidase
RA 197,395 T→C 5.2% S284P (TCT→CCT)  yaeL → zinc metallopeptidase
RA 218,387 A→C 5.5% L130R (CTG→CGG)  proS ← prolyl‑tRNA synthetase
RA 218,391 G→A 5.4% P129S (CCG→TCG)  proS ← prolyl‑tRNA synthetase
RA 226,300 T→C 5.1% noncoding (542/2904 nt) rrlH → 23S ribosomal RNA
RA 234,956 Δ1 bp 5.4% coding (141/723 nt) yafS → predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase
RA 234,961 G→C 5.8% G49A (GGC→GCC)  yafS → predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase
RA 234,965:1 +C 6.0% coding (150/723 nt) yafS → predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase
RA 236,101 A→C 79.8% D12A (GAT→GCT)  dnaQ → DNA polymerase III epsilon subunit
RA 236,107 A→C 78.5% E14A (GAA→GCA)  dnaQ → DNA polymerase III epsilon subunit
RA 281,467 T→C 6.4% intergenic (‑260/‑14) yagA ← / → yagE predicted DNA‑binding transcriptional regulator/predicted lyase/synthase
RA 281,469 A→T 7.3% intergenic (‑262/‑12) yagA ← / → yagE predicted DNA‑binding transcriptional regulator/predicted lyase/synthase
RA 281,471 G→A 7.1% intergenic (‑264/‑10) yagA ← / → yagE predicted DNA‑binding transcriptional regulator/predicted lyase/synthase
RA 324,098 T→G 5.1% N164T (AAC→ACC) ‡ ykgH ← predicted inner membrane protein
RA 324,099 T→A 5.1% N164Y (AAC→TAC) ‡ ykgH ← predicted inner membrane protein
RA 547,694 A→G 100% pseudogene (114/261 nt)
pseudogene (114/1259 nt)		 ylbE →
ylbE →		 ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment
ECK0512:JW0508+JW0507:b4572; hypothetical protein
RA 547,831:1 +G 100% pseudogene (251/261 nt)
pseudogene (251/1259 nt)		 ylbE →
ylbE →		 ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment
ECK0512:JW0508+JW0507:b4572; hypothetical protein
RA 552,689 T→C 5.8% N159D (AAC→GAC)  lpxH ← UDP‑2,3‑diacylglucosamine pyrophosphatase
RA 552,699 T→G 6.4% R155R (CGA→CGC)  lpxH ← UDP‑2,3‑diacylglucosamine pyrophosphatase
RA 556,858 A→T 100% L36Q (CTG→CAG)  folD ← bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase
RA 563,933 T→A 5.6% intergenic (‑230/‑13) fimZ ← / → argU predicted DNA‑binding transcriptional regulator/tRNA‑Arg
RA 596,023 C→T 9.1% L401L (CTG→TTG)  cusC → copper/silver efflux system, outer membrane component
RA 596,030 T→G 10.2% I403S (ATT→AGT)  cusC → copper/silver efflux system, outer membrane component
RA 596,033 C→A 9.0% T404N (ACT→AAT)  cusC → copper/silver efflux system, outer membrane component
RA 596,040 A→G 11.3% Q406Q (CAA→CAG)  cusC → copper/silver efflux system, outer membrane component
RA 609,469 C→T 5.5% intergenic (‑158/+8) entD ← / ← fepA phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex/iron‑enterobactin outer membrane transporter
RA 609,471 T→C 5.5% intergenic (‑160/+6) entD ← / ← fepA phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex/iron‑enterobactin outer membrane transporter
RA 609,474 G→A 5.4% intergenic (‑163/+3) entD ← / ← fepA phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex/iron‑enterobactin outer membrane transporter
RA 609,476 A→G 5.5% intergenic (‑165/+1) entD ← / ← fepA phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex/iron‑enterobactin outer membrane transporter
RA 651,333 G→A 6.6% intergenic (‑254/‑125) citC ← / → citA citrate lyase synthetase/sensory histidine kinase in two‑component regulatory system with citB
MC JC 654,214 Δ1,199 bp 100% [dcuC]–[dcuC] [dcuC], insH, [dcuC]
RA 657,797 C→A 8.7% D28E (GAC→GAA)  cspE → DNA‑binding transcriptional repressor
RA 657,802 T→A 8.6% F30Y (TTC→TAC)  cspE → DNA‑binding transcriptional repressor
RA 657,805 T→A 7.8% V31E (GTA→GAA)  cspE → DNA‑binding transcriptional repressor
RA 657,810 T→G 8.1% F33V (TTC→GTC)  cspE → DNA‑binding transcriptional repressor
RA 998,620 C→T 6.2% Q111* (CAG→TAG)  ycbQ → predicted fimbrial‑like adhesin protein
RA 1,071,548 T→G 7.5% T214P (ACA→CCA)  rarA ← predicted hydrolase
RA 1,071,551 G→C 7.6% P213A (CCA→GCA)  rarA ← predicted hydrolase
RA 1,071,554 C→A 7.6% V212L (GTG→TTG)  rarA ← predicted hydrolase
RA 1,090,229 C→T 7.6% M17I (ATG→ATA)  ycdR ← predicted enzyme associated with biofilm formation
RA 1,090,238 A→G 8.3% S14S (AGT→AGC)  ycdR ← predicted enzyme associated with biofilm formation
RA 1,093,686 T→C 100% V130A (GTA→GCA)  ycdT → predicted diguanylate cyclase
RA 1,094,198 A→T 9.2% T301S (ACA→TCA)  ycdT → predicted diguanylate cyclase
RA 1,170,593 G→C 5.3% intergenic (‑184/‑57) ycfQ ← / → ycfR predicted DNA‑binding transcriptional regulator/hypothetical protein
RA 1,185,346 T→A 5.1% I226F (ATC→TTC)  potB ← polyamine transporter subunit
RA 1,218,216 C→A 6.1% intergenic (+4/‑109) ymgB → / → ymgC hypothetical protein/hypothetical protein
RA 1,218,219 A→C 7.3% intergenic (+7/‑106) ymgB → / → ymgC hypothetical protein/hypothetical protein
RA 1,218,223 T→A 7.4% intergenic (+11/‑102) ymgB → / → ymgC hypothetical protein/hypothetical protein
RA 1,218,227 G→T 6.5% intergenic (+15/‑98) ymgB → / → ymgC hypothetical protein/hypothetical protein
RA 1,218,230 T→G 6.8% intergenic (+18/‑95) ymgB → / → ymgC hypothetical protein/hypothetical protein
RA 1,225,816 A→T 9.2% intergenic (+332/+40) ycgI → / ← minE hypothetical protein/cell division topological specificity factor
RA 1,225,819 A→T 8.8% intergenic (+335/+37) ycgI → / ← minE hypothetical protein/cell division topological specificity factor
RA 1,250,324 T→A 5.8% D123V (GAC→GTC)  dhaH ← fused predicted dihydroxyacetone‑specific PTS enzyme HPr component and EI component
RA 1,250,330 A→T 6.8% I121N (ATC→AAC)  dhaH ← fused predicted dihydroxyacetone‑specific PTS enzyme HPr component and EI component
RA 1,250,333 A→T 8.3% V120D (GTT→GAT)  dhaH ← fused predicted dihydroxyacetone‑specific PTS enzyme HPr component and EI component
RA 1,279,466 T→G 8.0% intergenic (‑271/‑68) narX ← / → narK sensory histidine kinase in two‑component regulatory system with NarL/nitrate/nitrite transporter
RA 1,279,469 C→A 7.7% intergenic (‑274/‑65) narX ← / → narK sensory histidine kinase in two‑component regulatory system with NarL/nitrate/nitrite transporter
MC JC 1,301,041 Δ1,336 bp 100% insC–insD insC, insD
RA 1,303,631 C→T 100% Q246Y (CAG→TAT)  oppA → oligopeptide transporter subunit
RA 1,303,633 G→T 100% Q246Y (CAG→TAT)  oppA → oligopeptide transporter subunit
RA 1,340,291 T→C 6.9% N195S (AAC→AGC)  ribA ← GTP cyclohydrolase II
RA 1,340,293 C→G 6.9% L194L (CTG→CTC) ‡ ribA ← GTP cyclohydrolase II
RA 1,340,295 G→A 7.0% L194L (CTG→TTG) ‡ ribA ← GTP cyclohydrolase II
RA 1,362,527 C→T 7.5% E32E (GAG→GAA)  puuA ← gamma‑Glu‑putrescine synthase
RA 1,427,892 A→T 9.8% intergenic (+198/‑276) ydaY → / → ynaA hypothetical protein/predicted tail protein
RA 1,487,670 C→A 8.9% P947T (CCC→ACC) ‡ hrpA → ATP‑dependent helicase
RA 1,487,671 C→T 9.0% P947L (CCC→CTC) ‡ hrpA → ATP‑dependent helicase
RA 1,487,674 A→G 9.2% D948G (GAT→GGT) ‡ hrpA → ATP‑dependent helicase
RA 1,487,675 T→G 9.1% D948E (GAT→GAG) ‡ hrpA → ATP‑dependent helicase
RA 1,570,688 T→C 5.2% M506V (ATG→GTG)  gadC ← predicted glutamate:gamma‑aminobutyric acid antiporter
RA 1,583,576 G→A 6.4% G221G (GGC→GGT)  ydeN ← conserved hypothetical protein
RA 1,583,579 A→G 6.3% R220R (CGT→CGC) ‡ ydeN ← conserved hypothetical protein
RA 1,583,580 C→T 6.3% R220H (CGT→CAT) ‡ ydeN ← conserved hypothetical protein
RA 1,583,583 T→C 6.1% N219S (AAC→AGC)  ydeN ← conserved hypothetical protein
RA 1,599,977 T→A 7.9% intergenic (‑177/+354) ydeK ← / ← ydeV predicted lipoprotein/predicted sugar kinase
RA 1,634,421 T→A 5.7% intergenic (‑422/‑332) ydfJ ← / → ydfK predicted transporter/predicted DNA‑binding transcriptional regulator
RA 1,659,609 A→T 5.3% intergenic (+25/‑174) ynfD → / → ynfE hypothetical protein/oxidoreductase subunit
RA 1,659,612 A→T 5.1% intergenic (+28/‑171) ynfD → / → ynfE hypothetical protein/oxidoreductase subunit
RA 1,683,336 T→A 9.2% L216Q (CTG→CAG)  folM → dihydrofolate reductase isozyme
RA 1,746,008 T→A 7.3% F280I (TTT→ATT)  mdtK → multidrug efflux system transporter
RA 1,746,014 T→G 7.7% S282A (TCA→GCA) ‡ mdtK → multidrug efflux system transporter
RA 1,746,015 C→A 7.7% S282* (TCA→TAA) ‡ mdtK → multidrug efflux system transporter
RA 1,883,072 T→A 7.3% D151V (GAC→GTC)  yeaT ← predicted DNA‑binding transcriptional regulator
RA 1,894,072 C→T 5.6% G293D (GGT→GAT)  yoaA ← conserved hypothetical protein with nucleoside triphosphate hydrolase domain
RA 1,915,565 A→T 8.9% A322A (GCT→GCA)  prc ← carboxy‑terminal protease for penicillin‑binding protein 3
RA 1,915,568 A→T 8.9% P321P (CCT→CCA)  prc ← carboxy‑terminal protease for penicillin‑binding protein 3
RA 1,928,602 C→A 8.4% G651V (GGC→GTC)  ptrB ← protease II
RA 1,928,605 G→C 8.5% S650* (TCA→TGA)  ptrB ← protease II
RA 1,928,608 T→G 8.9% D649A (GAC→GCC)  ptrB ← protease II
RA 1,928,614 T→G 7.3% D647A (GAC→GCC)  ptrB ← protease II
RA 1,940,135 G→C 6.6% G258A (GGC→GCC)  pykA → pyruvate kinase II
RA 1,988,854 T→G 9.3% intergenic (‑589/‑208) araF ← / → yecI L‑arabinose transporter subunit/predicted ferritin‑like protein
RA 1,988,855 T→A 10.6% intergenic (‑590/‑207) araF ← / → yecI L‑arabinose transporter subunit/predicted ferritin‑like protein
RA 1,988,856 C→A 10.5% intergenic (‑591/‑206) araF ← / → yecI L‑arabinose transporter subunit/predicted ferritin‑like protein
RA 2,087,556 A→G 7.3% V36A (GTG→GCG)  yeeE ← predicted inner membrane protein
RA 2,132,040 T→A 7.1% N326Y (AAT→TAT)  wcaD ← predicted colanic acid polymerase
RA 2,132,042 T→A 6.8% D325V (GAC→GTC)  wcaD ← predicted colanic acid polymerase
RA 2,132,044 T→A 6.8% I324I (ATA→ATT)  wcaD ← predicted colanic acid polymerase
RA 2,166,086 C→G 9.6% F358L (TTC→TTG)  baeS → sensory histidine kinase in two‑component regulatory system with BaeR
RA 2,170,610 T→C 8.2% intergenic (‑167/‑239) yegR ← / → yegS hypothetical protein/conserved hypothetical protein
RA 2,176,543 C→G 5.9% L53F (TTG→TTC)  gatB ← galactitol‑specific enzyme IIB component of PTS
MC JC 2,176,983 Δ1,199 bp 100% [gatA]–[gatA] [gatA], insH, [gatA]
RA 2,217,253 T→C 8.0% E242E (GAA→GAG)  yehU ← predicted sensory kinase in two‑component system with YehT
RA 2,264,702 G→A 6.6% R15C (CGC→TGC)  fruA ← fused fructose‑specific PTS enzyme IIB'BC components
RA 2,274,044 G→T 6.2% intergenic (+165/‑16) spr → / → rtn predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein
MC JC 2,320,795 Δ1,336 bp 100% insD–[rcsC] insD, insC, [rcsC]
RA 2,386,718 C→T 7.4% G147G (GGC→GGT)  elaC → binuclear zinc phosphodiesterase
RA 2,386,745 G→A 11.1% P156P (CCG→CCA)  elaC → binuclear zinc phosphodiesterase
RA 2,388,626 A→T 14.1% intergenic (+32/+39) elaD → / ← yfbK hypothetical protein/conserved hypothetical protein
RA 2,388,629 A→T 12.7% intergenic (+35/+36) elaD → / ← yfbK hypothetical protein/conserved hypothetical protein
RA 2,489,358 T→A 6.7% V53D (GTC→GAC)  evgA → DNA‑binding response regulator in two‑component regulatory system with EvgS
RA 2,773,642 T→A 6.5% F557I (TTT→ATT)  yfjW → predicted inner membrane protein
RA 2,809,581 G→A 82.9% G52G (GGG→GGA)  mprA → DNA‑binding transcriptional regulator
RA 2,866,110 T→A 100% intergenic (‑20/+160) rpoS ← / ← nlpD RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein
RA 2,906,143 T→A 5.1% N152I (AAC→ATC)  eno ← enolase
RA 2,906,894 G→A 5.1% L477L (CTG→TTG)  pyrG ← CTP synthetase
RA 2,929,500 A→C 8.7% K423N (AAA→AAC)  sdaB → L‑serine deaminase II
RA 2,929,501 G→T 8.3% V424F (GTT→TTT)  sdaB → L‑serine deaminase II
RA 2,939,937 T→A 5.3% L117F (TTA→TTT)  ygdD ← conserved inner membrane protein
RA 2,946,943 T→C 6.2% I242V (ATC→GTC)  amiC ← N‑acetylmuramoyl‑L‑alanine amidase
RA 2,946,944 G→A 6.3% D241D (GAC→GAT)  amiC ← N‑acetylmuramoyl‑L‑alanine amidase
RA 3,041,067 C→A 9.0% intergenic (+118/+78) ygfZ → / ← yqfA predicted folate‑dependent regulatory protein/predicted oxidoreductase, inner membrane subunit
RA 3,065,979 A→T 6.1% intergenic (‑150/+17) ygfI ← / ← yggE predicted DNA‑binding transcriptional regulator/conserved hypothetical protein
RA 3,066,112 C→T 5.1% V209M (GTG→ATG)  yggE ← conserved hypothetical protein
RA 3,127,720 T→G 5.1% R384R (CGA→CGC)  yghO ← predicted DNA‑binding transcriptional regulator
RA 3,127,723 G→T 5.2% Y383* (TAC→TAA)  yghO ← predicted DNA‑binding transcriptional regulator
RA 3,127,726 A→C 5.6% R382R (CGT→CGG)  yghO ← predicted DNA‑binding transcriptional regulator
RA 3,127,729 C→A 5.1% K381N (AAG→AAT)  yghO ← predicted DNA‑binding transcriptional regulator
RA 3,142,816 C→G 5.6% S2T (AGT→ACT) 
E327D (GAG→GAC) 		 hybB ←
hybA ←		 predicted hydrogenase 2 cytochrome b type component
hydrogenase 2 4Fe‑4S ferredoxin‑type component
RA 3,186,231 A→T 5.4% N59I (AAT→ATT)  yqiG → predicted outer membrane usher protein
RA 3,186,236 A→C 5.4% K61Q (AAG→CAG)  yqiG → predicted outer membrane usher protein
RA 3,214,645 G→C 5.2% P168R (CCG→CGG)  yqjH ← predicted siderophore interacting protein
RA 3,214,649 T→A 5.6% K167* (AAA→TAA)  yqjH ← predicted siderophore interacting protein
RA 3,222,510 G→A 6.0% V408I (GTC→ATC)  ebgA → cryptic beta‑D‑galactosidase, alpha subunit
RA 3,222,514 G→C 6.3% G409A (GGC→GCC)  ebgA → cryptic beta‑D‑galactosidase, alpha subunit
RA 3,449,061 C→T 5.3% T757T (ACG→ACA)  rpoC ← RNA polymerase, beta prime subunit
RA 3,643,684 C→T 7.8% S615S (TCG→TCA)  cyaA ← adenylate cyclase
RA 3,651,710 T→G 5.0% L346R (CTT→CGT)  aslA → acrylsulfatase‑like enzyme
RA 3,684,513 G→A 100% pseudogene (546/582 nt)
pseudogene (1609/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,684,624 C→A 100% pseudogene (435/582 nt)
pseudogene (1498/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,684,643 T→G 100% pseudogene (416/582 nt)
pseudogene (1479/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,684,687 A→G 100% pseudogene (372/582 nt)
pseudogene (1435/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,684,705 G→A 100% pseudogene (354/582 nt)
pseudogene (1417/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,684,717 A→G 100% pseudogene (342/582 nt)
pseudogene (1405/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,684,858 A→G 100% pseudogene (201/582 nt)
pseudogene (1264/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,684,870 C→T 100% pseudogene (189/582 nt)
pseudogene (1252/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,684,885 T→C 100% pseudogene (174/582 nt)
pseudogene (1237/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,684,921 A→G 100% pseudogene (138/582 nt)
pseudogene (1201/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,684,927 A→G 100% pseudogene (132/582 nt)
pseudogene (1195/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,685,038 C→T 100% pseudogene (21/582 nt)
pseudogene (1084/1645 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,685,100 A→C 100% pseudogene (1022/1645 nt) ilvG ← ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,685,129 T→A 100% pseudogene (993/1645 nt) ilvG ← ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
RA 3,685,143:1 +AT 100% pseudogene (979/1645 nt)
pseudogene (979/984 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment
RA 3,685,267 C→T 100% pseudogene (855/1645 nt)
pseudogene (855/984 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment
RA 3,685,312 G→A 100% pseudogene (810/1645 nt)
pseudogene (810/984 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment
RA 3,685,329 G→A 100% pseudogene (793/1645 nt)
pseudogene (793/984 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment
RA 3,685,333 A→G 100% pseudogene (789/1645 nt)
pseudogene (789/984 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment
RA 3,685,354 T→C 100% pseudogene (768/1645 nt)
pseudogene (768/984 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment
RA 3,685,369 G→A 100% pseudogene (753/1645 nt)
pseudogene (753/984 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment
RA 3,685,375 C→T 100% pseudogene (747/1645 nt)
pseudogene (747/984 nt)		 ilvG ←
ilvG ←		 ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II
ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment
MC JC 3,742,936 Δ1,336 bp 100% insD–insC insD, insC
MC JC 3,746,911 Δ1,199 bp 100% [tnaB]–[tnaB] [tnaB], insH, [tnaB]
RA 3,808,227 T→A 6.1% intergenic (+31/+22) yicI → / ← yicH predicted alpha‑glucosidase/conserved hypothetical protein
RA 3,811,559 A→G 5.4% intergenic (‑89/‑191) yicE ← / → gltS predicted transporter/glutamate transporter
RA 3,824,278 T→C 100% pseudogene (413/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,324 T→C 100% pseudogene (459/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,360 A→T 100% pseudogene (495/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,366 G→A 100% pseudogene (501/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,372 C→T 100% pseudogene (507/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,378 2 bp→AA 100% pseudogene (513‑514/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,408 T→A 100% pseudogene (543/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,512 T→C 100% pseudogene (647/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,522 T→G 100% pseudogene (657/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,531:1 +G 100% pseudogene (666/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,781 T→C 100% D45D (GAT→GAC)  pyrE → orotate phosphoribosyltransferase
RA 3,824,814 G→A 100% A56A (GCG→GCA)  pyrE → orotate phosphoribosyltransferase
RA 3,824,826 C→T 100% S60S (TCC→TCT)  pyrE → orotate phosphoribosyltransferase
RA 3,824,880 C→G 100% A78A (GCC→GCG)  pyrE → orotate phosphoribosyltransferase
RA 3,824,886 A→T 100% T80T (ACA→ACT)  pyrE → orotate phosphoribosyltransferase
RA 3,824,892 T→C 100% A82A (GCT→GCC)  pyrE → orotate phosphoribosyltransferase
RA 3,824,898 A→G 100% A84A (GCA→GCG)  pyrE → orotate phosphoribosyltransferase
RA 3,824,913 C→T 100% H89H (CAC→CAT)  pyrE → orotate phosphoribosyltransferase
RA 3,824,919 G→T 100% L91L (CTG→CTT)  pyrE → orotate phosphoribosyltransferase
RA 3,824,949 A→G 100% E101E (GAA→GAG)  pyrE → orotate phosphoribosyltransferase
RA 3,825,051 G→A 100% E135E (GAG→GAA)  pyrE → orotate phosphoribosyltransferase
RA 3,825,072 C→T 100% A142A (GCC→GCT)  pyrE → orotate phosphoribosyltransferase
RA 3,825,096 G→A 100% V150V (GTG→GTA)  pyrE → orotate phosphoribosyltransferase
RA 3,825,108 C→T 100% L154L (CTC→CTT)  pyrE → orotate phosphoribosyltransferase
RA 3,825,123 C→G 100% R159R (CGC→CGG)  pyrE → orotate phosphoribosyltransferase
RA 3,825,204 C→T 100% D186D (GAC→GAT)  pyrE → orotate phosphoribosyltransferase
RA 3,825,213 T→C 100% A189A (GCT→GCC)  pyrE → orotate phosphoribosyltransferase
RA 3,825,216 C→T 100% Y190Y (TAC→TAT)  pyrE → orotate phosphoribosyltransferase
RA 3,920,280 A→T 6.7% D29E (GAT→GAA)  cspA ← major cold shock protein
RA 3,985,584 T→A 5.4% N50I (AAT→ATT)  yhiF ← predicted DNA‑binding ranscriptional regulator
RA 3,985,588 T→A 5.4% M49L (ATG→TTG)  yhiF ← predicted DNA‑binding ranscriptional regulator
RA 4,009,462 G→T 7.7% intergenic (+15/‑351) yhiJ → / → yhiI hypothetical protein/predicted HlyD family secretion protein
RA 4,012,882 C→T 5.9% T669M (ACG→ATG)  rbbA → fused ribosome‑associated ATPases
RA 4,070,984 T→C 5.9% I630T (ATT→ACT)  glgX → glycogen debranching enzyme
RA 4,119,898 A→G 6.5% L62L (CTA→CTG)  hofQ → predicted fimbrial transporter
RA 4,119,899 A→T 6.5% T63S (ACA→TCA) ‡ hofQ → predicted fimbrial transporter
RA 4,119,900 C→T 6.2% T63I (ACA→ATA) ‡ hofQ → predicted fimbrial transporter
RA 4,165,964 G→A 5.7% C34Y (TGT→TAT)  rpsL → 30S ribosomal subunit protein S12
RA 4,165,968 T→A 5.5% T35T (ACT→ACA)  rpsL → 30S ribosomal subunit protein S12
RA 4,184,570 G→T 7.6% S90Y (TCT→TAT)  gspC ← general secretory pathway component, cryptic
RA 4,184,957 T→A 13.5% intergenic (‑119/‑61) gspC ← / → gspA general secretory pathway component, cryptic/general secretory pathway component, cryptic
RA 4,218,899 T→A 8.1% intergenic (+100/‑169) metA → / → aceB homoserine transsuccinylase/malate synthase A
RA 4,233,032 C→A 7.6% intergenic (+80/+11) yjbB → / ← pepE predicted transporter/(alpha)‑aspartyl dipeptidase
RA 4,273,732 G→A 7.3% intergenic (+15/‑96) aphA → / → yjbQ acid phosphatase/phosphotransferase, class B, non‑specific/conserved hypothetical protein
RA 4,285,505 A→T 10.5% S387R (AGT→AGA) ‡ yjcF ← conserved hypothetical protein
RA 4,285,507 T→C 9.7% S387G (AGT→GGT) ‡ yjcF ← conserved hypothetical protein
MC JC 4,310,363 Δ1,199 bp 100% insH–[alsK] insH, [alsK]
RA 4,311,972 A→T 7.3% L169Q (CTG→CAG)  alsK ← D‑allose kinase
RA 4,357,328 G→A 5.3% V23M (GTG→ATG)  yjdK → hypothetical protein
RA 4,357,331 T→A 5.3% F24I (TTC→ATC)  yjdK → hypothetical protein
RA 4,371,271 Δ2 bp 100% intergenic (‑6/+299) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,372,380 G→T 6.9% L210M (CTG→ATG)  aspA ← aspartate ammonia‑lyase
RA 4,372,381 G→C 7.0% I209M (ATC→ATG) ‡ aspA ← aspartate ammonia‑lyase
RA 4,372,382 A→C 7.6% I209S (ATC→AGC) ‡ aspA ← aspartate ammonia‑lyase
RA 4,425,606 C→A 6.7% A316E (GCA→GAA)  ulaA → L‑ascorbate‑specific enzyme IIC component of PTS
RA 4,425,613 C→A 8.4% I318I (ATC→ATA)  ulaA → L‑ascorbate‑specific enzyme IIC component of PTS
RA 4,425,614 T→G 8.6% Y319D (TAT→GAT)  ulaA → L‑ascorbate‑specific enzyme IIC component of PTS
RA 4,534,172 G→A 5.9% A251V (GCA→GTA)  sgcC ← predicted phosphotransferase enzyme IIC component
RA 4,563,587 T→A 100% K207M (AAG→ATG)  iadA ← isoaspartyl dipeptidase
RA 4,609,912 T→G 6.5% E144D (GAA→GAC)  fhuF ← ferric iron reductase involved in ferric hydroximate transport
RA 4,628,787 A→T 5.4% L4* (TTA→TAA)  lplA ← lipoate‑protein ligase A
RA 4,640,569 T→C 6.2% D123D (GAT→GAC)  creA → conserved hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ AP009048 573865–575008 575999 992–2135 17 [15] [0] 161 insH–[nmpC] insH,[nmpC]
* * ÷ AP009048 4213629–4216717 4216717 1–3089 20 [15] [15] 17 rrlE–[rrfE] rrlE,[rrfE]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 4738 =85 (1.040)7 (0.100) 4/86 NT 9.2% coding (1005/1287 nt) thrC threonine synthase
?AP009048 4758 = 63 (0.880)coding (1025/1287 nt) thrC threonine synthase
* ? AP009048 4918 =60 (0.740)5 (0.070) 3/84 NT 8.7% coding (1185/1287 nt) thrC threonine synthase
?AP009048 4939 = 53 (0.760)coding (1206/1287 nt) thrC threonine synthase
* ? AP009048 15743 =NA (NA)4 (0.050) 4/90 NT NA coding (299/1113 nt) insL IS186/IS421 transposase
?AP009048 15768 = NA (NA)coding (324/1113 nt) insL IS186/IS421 transposase
* ? AP009048 17289 =60 (0.740)7 (0.090) 3/92 NT 9.8% intergenic (‑329/‑200) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/sodium‑proton antiporter
?AP009048 17320 = 73 (0.950)intergenic (‑360/‑169) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/sodium‑proton antiporter
* ? AP009048 18686 =45 (0.550)4 (0.060) 3/86 NT 8.6% intergenic (+31/‑29) nhaA/nhaR sodium‑proton antiporter/DNA‑binding transcriptional activator
?AP009048 18711 = 45 (0.630)intergenic (+56/‑4) nhaA/nhaR sodium‑proton antiporter/DNA‑binding transcriptional activator
* ? AP009048 = 4866592 (1.130)8 (0.110) 4/86 NT 9.2% coding (897/1863 nt) kefC potassium:proton antiporter
?AP009048 = 48685 77 (1.080)coding (917/1863 nt) kefC potassium:proton antiporter
* ? AP009048 70061 =77 (0.950)278 (4.400)
+CGCGTACAACT		 79/76 NT 80.1% intergenic (‑13/‑326) araB/araC L‑ribulokinase/DNA‑binding transcriptional dual regulator
?AP009048 236044 = 101 (1.240)intergenic (‑42/‑23) rnhA/dnaQ ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit
* ? AP009048 = 7126587 (1.070)134 (2.300)
+AGGGTCCCTAAGTC		 58/70 NT 77.3% coding (879/879 nt) araC DNA‑binding transcriptional dual regulator
?AP009048 3464879 = 23 (0.280)intergenic (‑255/+46) murB/rrfB UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA
* ? AP009048 = 7126587 (1.070)4 (0.070)
+AGGGTCCCTAAGTC		 3/70 NT 8.3% coding (879/879 nt) araC DNA‑binding transcriptional dual regulator
?AP009048 = 3464920 37 (0.450)intergenic (‑296/+5) murB/rrfB UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA
* ? AP009048 = 8146183 (1.020)5 (0.070) 3/86 NT 5.8% coding (498/1092 nt) leuB 3‑isopropylmalate dehydrogenase
?AP009048 = 81467 89 (1.250)coding (492/1092 nt) leuB 3‑isopropylmalate dehydrogenase
* ? AP009048 89227 =71 (0.870)5 (0.070) 4/84 NT 7.6% intergenic (+195/‑407) fruR/mraZ DNA‑binding transcriptional dual regulator/conserved hypothetical protein
?AP009048 89264 = 60 (0.860)intergenic (+232/‑370) fruR/mraZ DNA‑binding transcriptional dual regulator/conserved hypothetical protein
* ? AP009048 144523 =68 (0.840)6 (0.080) 3/88 NT 7.8% intergenic (+51/‑54) yadH/yadI predicted transporter subunit/predicted PTS Enzyme IIA
?AP009048 144548 = 81 (1.110)intergenic (+76/‑29) yadH/yadI predicted transporter subunit/predicted PTS Enzyme IIA
* ? AP009048 = 16508664 (0.790)6 (0.080) 3/86 NT 9.7% coding (357/2535 nt) mrcB fused glycosyl transferase and transpeptidase
?AP009048 = 165097 56 (0.780)coding (368/2535 nt) mrcB fused glycosyl transferase and transpeptidase
* ? AP009048 167813 =76 (0.930)4 (0.060) 3/86 NT 5.5% coding (330/2244 nt) fhuA ferrichrome outer membrane transporter
?AP009048 167839 = 72 (1.010)coding (356/2244 nt) fhuA ferrichrome outer membrane transporter
* ? AP009048 = 16902976 (0.930)10 (0.140) 3/84 NT 10.4% coding (1546/2244 nt) fhuA ferrichrome outer membrane transporter
?AP009048 = 169050 108 (1.550)coding (1567/2244 nt) fhuA ferrichrome outer membrane transporter
* ? AP009048 179439 =50 (0.610)3 (0.040) 3/88 NT 7.3% coding (203/1518 nt) dgt deoxyguanosine triphosphate triphosphohydrolase
?AP009048 179467 = 31 (0.420)coding (231/1518 nt) dgt deoxyguanosine triphosphate triphosphohydrolase
* ? AP009048 = 224027NA (NA)9 (0.130) 4/86 NT NA noncoding (257/1542 nt) rrsH 16S ribosomal RNA
?AP009048 = 224038 NA (NA)noncoding (268/1542 nt) rrsH 16S ribosomal RNA
* ? AP009048 = 225084NA (NA)10 (0.140) 7/84 NT NA noncoding (1314/1542 nt) rrsH 16S ribosomal RNA
?AP009048 = 225092 NA (NA)noncoding (1322/1542 nt) rrsH 16S ribosomal RNA
* ? AP009048 = 225281NA (NA)15 (0.210) 7/88 NT NA noncoding (1511/1542 nt) rrsH 16S ribosomal RNA
?AP009048 = 225293 NA (NA)noncoding (1523/1542 nt) rrsH 16S ribosomal RNA
* ? AP009048 225282 =NA (NA)14 (0.190) 5/88 NT 100% noncoding (1512/1542 nt) rrsH 16S ribosomal RNA
?AP009048 225294 = 0 (0.000)noncoding (1524/1542 nt) rrsH 16S ribosomal RNA
* ? AP009048 225818 =NA (NA)13 (0.170) 7/92 NT NA noncoding (60/2904 nt) rrlH 23S ribosomal RNA
?AP009048 225835 = NA (NA)noncoding (77/2904 nt) rrlH 23S ribosomal RNA
* ? AP009048 = 225915NA (NA)13 (0.190) 9/82 NT NA noncoding (157/2904 nt) rrlH 23S ribosomal RNA
?AP009048 = 225926 NA (NA)noncoding (168/2904 nt) rrlH 23S ribosomal RNA
* ? AP009048 = 225946NA (NA)10 (0.140) 8/88 NT NA noncoding (188/2904 nt) rrlH 23S ribosomal RNA
?AP009048 = 225965 NA (NA)noncoding (207/2904 nt) rrlH 23S ribosomal RNA
* ? AP009048 = 226279NA (NA)9 (0.120) 6/92 NT 9.4% noncoding (521/2904 nt) rrlH 23S ribosomal RNA
?AP009048 = 226310 92 (1.130)noncoding (552/2904 nt) rrlH 23S ribosomal RNA
* ? AP009048 226398 =NA (NA)6 (0.080) 4/86 NT NA noncoding (640/2904 nt) rrlH 23S ribosomal RNA
?AP009048 226415 = NA (NA)noncoding (657/2904 nt) rrlH 23S ribosomal RNA
* ? AP009048 226815 =NA (NA)5 (0.070) 4/92 NT NA noncoding (1057/2904 nt) rrlH 23S ribosomal RNA
?AP009048 226840 = NA (NA)noncoding (1082/2904 nt) rrlH 23S ribosomal RNA
* ? AP009048 227287 =NA (NA)5 (0.070) 3/90 NT NA noncoding (1529/2904 nt) rrlH 23S ribosomal RNA
?AP009048 227316 = NA (NA)noncoding (1558/2904 nt) rrlH 23S ribosomal RNA
* ? AP009048 = 227753NA (NA)6 (0.080) 3/92 NT NA noncoding (1995/2904 nt) rrlH 23S ribosomal RNA
?AP009048 = 227788 NA (NA)noncoding (2030/2904 nt) rrlH 23S ribosomal RNA
* ? AP009048 = 228022NA (NA)6 (0.090) 4/84 NT NA noncoding (2264/2904 nt) rrlH 23S ribosomal RNA
?AP009048 = 228033 NA (NA)noncoding (2275/2904 nt) rrlH 23S ribosomal RNA
* ? AP009048 228057 =NA (NA)12 (0.160) 6/88 NT NA noncoding (2299/2904 nt) rrlH 23S ribosomal RNA
?AP009048 228076 = NA (NA)noncoding (2318/2904 nt) rrlH 23S ribosomal RNA
* ? AP009048 = 2287440 (0.000)13 (0.180) 5/86 NT 100% intergenic (+82/‑12) rrlH/rrfH 23S ribosomal RNA/5S ribosomal RNA
?AP009048 3596200 = NA (NA)intergenic (‑36/+58) rrfA/rrlA 5S ribosomal RNA/23S ribosomal RNA
* ? AP009048 = 23580692 (1.130)9 (0.120) 6/90 NT 9.7% coding (197/468 nt) rnhA ribonuclease HI, degrades RNA of DNA‑RNA hybrids
?AP009048 = 235822 83 (1.110)coding (181/468 nt) rnhA ribonuclease HI, degrades RNA of DNA‑RNA hybrids
* ? AP009048 = 23679856 (0.690)137 (3.750)
+27 bp		 47/44 NT 80.7% coding (732/732 nt) dnaQ DNA polymerase III epsilon subunit
?AP009048 4124502 = 90 (1.110)intergenic (+106/‑1) damX/dam hypothetical protein/DNA adenine methylase
* ? AP009048 239208 =34 (0.420)4 (0.060) 3/84 NT 12.1% coding (19/189 nt) yafF conserved hypothetical protein
?AP009048 1534530 = NA (NA)coding (1001/1137 nt) ydcC conserved hypothetical protein
* ? AP009048 = 274373NA (NA)72 (0.880) 34/98 NT 100% intergenic (‑32/‑176) insH/mmuP IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter
?AP009048 576000 = 0 (0.000)pseudogene (109/1128 nt) nmpC DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin
* ? AP009048 = 29183791 (1.120)4 (0.050) 4/90 NT 5.0% coding (336/627 nt) yagK conserved hypothetical protein
?AP009048 = 291858 67 (0.900)coding (315/627 nt) yagK conserved hypothetical protein
* ? AP009048 303884 =136 (1.670)8 (0.100) 4/92 NT 6.0% coding (546/711 nt) yagV conserved hypothetical protein
?AP009048 303908 = 121 (1.580)coding (522/711 nt) yagV conserved hypothetical protein
* ? AP009048 314453 =64 (0.790)54 (0.690)
+TC		 32/94 NT 63.8% coding (873/888 nt) eaeH attaching and effacing protein, pathogenesis factor
?AP009048 3932928 = 0 (0.000)coding (219/1608 nt) dppA dipeptide transporter
* ? AP009048 314454 =NA (NA)7 (0.090) 6/90 NT NA coding (874/888 nt) eaeH attaching and effacing protein, pathogenesis factor
?AP009048 314485 = NA (NA)intergenic (+17/‑21) eaeH/insE attaching and effacing protein, pathogenesis factor/IS3 element protein
* ? AP009048 314684 =NA (NA)7 (0.090) 3/90 NT NA coding (179/309 nt) insE IS3 element protein
?AP009048 314716 = NA (NA)coding (211/309 nt) insE IS3 element protein
* ? AP009048 314818 =NA (NA)9 (0.120) 5/90 NT NA coding (8/867 nt) insF IS3 element protein InsF
?AP009048 314838 = NA (NA)coding (28/867 nt) insF IS3 element protein InsF
* ? AP009048 315417 =NA (NA)4 (0.060) 4/80 NT NA coding (607/867 nt) insF IS3 element protein InsF
?AP009048 315454 = NA (NA)coding (644/867 nt) insF IS3 element protein InsF
* ? AP009048 315465 =NA (NA)8 (0.100) 6/92 NT NA coding (655/867 nt) insF IS3 element protein InsF
?AP009048 315484 = NA (NA)coding (674/867 nt) insF IS3 element protein InsF
* ? AP009048 = 315707NA (NA)104 (1.280) 53/98 NT 100% coding (654/687 nt) ykgA predicted DNA‑binding transcriptional regulator
?AP009048 576911 = 0 (0.000)coding (76/498 nt) ybcS predicted lysozyme
* ? AP009048 = 34442875 (0.920)7 (0.090) 4/96 NT 8.0% intergenic (+213/‑200) yahL/yahM hypothetical protein/hypothetical protein
?AP009048 = 344452 87 (1.090)intergenic (+237/‑176) yahL/yahM hypothetical protein/hypothetical protein
* ? AP009048 = 37693154 (0.660)6 (0.090) 3/84 NT 9.0% coding (662/834 nt) frmB predicted esterase
?AP009048 = 376951 75 (1.070)coding (642/834 nt) frmB predicted esterase
* ? AP009048 381056 =NA (NA)10 (0.140) 7/86 NT NA coding (159/906 nt) insD IS2 insertion element transposase InsAB'
?AP009048 381083 = NA (NA)coding (186/906 nt) insD IS2 insertion element transposase InsAB'
* ? AP009048 = 381061NA (NA)8 (0.110) 5/86 NT NA coding (164/906 nt) insD IS2 insertion element transposase InsAB'
?AP009048 = 381076 NA (NA)coding (179/906 nt) insD IS2 insertion element transposase InsAB'
* ? AP009048 381236 =NA (NA)9 (0.120) 4/90 NT NA coding (339/906 nt) insD IS2 insertion element transposase InsAB'
?AP009048 381263 = NA (NA)coding (366/906 nt) insD IS2 insertion element transposase InsAB'
* ? AP009048 381461 =NA (NA)9 (0.130) 6/86 NT NA coding (564/906 nt) insD IS2 insertion element transposase InsAB'
?AP009048 381491 = NA (NA)coding (594/906 nt) insD IS2 insertion element transposase InsAB'
* ? AP009048 390073 =135 (1.660)10 (0.140) 6/84 NT 8.7% coding (599/1461 nt) yaiT hypothetical protein
?AP009048 390095 = 93 (1.330)coding (621/1461 nt) yaiT hypothetical protein
* ? AP009048 392207 =153 (1.880)8 (0.110) 4/84 NT 5.9% intergenic (‑73/‑32) insE/yaiU IS3 element protein/hypothetical protein
?AP009048 392243 = 125 (1.790)coding (5/1404 nt) yaiU hypothetical protein
* ? AP009048 421854 =88 (1.080)6 (0.080) 3/90 NT 6.7% coding (116/1818 nt) malZ maltodextrin glucosidase
?AP009048 421887 = 87 (1.160)coding (149/1818 nt) malZ maltodextrin glucosidase
* ? AP009048 443782 =83 (1.020)9 (0.170) 3/62 NT 20.3% intergenic (‑43/‑125) panE/yajQ 2‑dehydropantoate reductase, NADPH‑specific/predicted nucleotide binding protein
?AP009048 443830 = 18 (0.350)intergenic (‑91/‑77) panE/yajQ 2‑dehydropantoate reductase, NADPH‑specific/predicted nucleotide binding protein
* ? AP009048 483431 =128 (1.570)5 (0.080) 4/76 NT 5.1% coding (197/3150 nt) acrB multidrug efflux system protein
?AP009048 = 3415101 88 (1.390)coding (214/3105 nt) acrF multidrug efflux system protein
* ? AP009048 = 51065672 (0.880)7 (0.100) 4/84 NT 10.5% intergenic (‑53/‑209) copA/ybaS copper transporter/predicted glutaminase
?AP009048 = 510663 58 (0.830)intergenic (‑60/‑202) copA/ybaS copper transporter/predicted glutaminase
* ? AP009048 = 54608471 (0.870)5 (0.070) 3/84 NT 7.4% coding (181/1668 nt) fdrA predicted acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain
?AP009048 = 546096 64 (0.920)coding (193/1668 nt) fdrA predicted acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain
* ? AP009048 566000 =NA (NA)118 (1.450) 58/98 NT 100% intergenic (+90/‑56) ybcD/insE DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE
?AP009048 = 576913 0 (0.000)coding (78/498 nt) ybcS predicted lysozyme
* ? AP009048 567451 =126 (1.550)11 (0.150) 7/88 NT 9.9% coding (167/186 nt) renD hypothetical protein
?AP009048 567473 = 86 (1.180)intergenic (+3/‑65) renD/emrE hypothetical protein/multidrug resistance protein
* ? AP009048 625985 =73 (0.900)7 (0.090) 4/90 NT 11.4% coding (693/1611 nt) entE 2,3‑dihydroxybenzoate‑AMP ligase component of enterobactin synthase multienzyme complex
?AP009048 626015 = 42 (0.560)coding (723/1611 nt) entE 2,3‑dihydroxybenzoate‑AMP ligase component of enterobactin synthase multienzyme complex
* ? AP009048 630089 =84 (1.030)5 (0.100)
+AGCGCCTTTCCACAGCGGG		 4/60 NT 7.5% coding (973/2106 nt) cstA carbon starvation protein
?AP009048 = 4595021 118 (1.450)coding (939/2151 nt) yjiY predicted inner membrane protein
* ? AP009048 = 63588366 (0.810)6 (0.080) 3/94 NT 7.8% intergenic (‑91/+56) ybdN/ybdO conserved hypothetical protein/predicted DNA‑binding transcriptional regulator
?AP009048 = 635900 78 (1.000)intergenic (‑108/+39) ybdN/ybdO conserved hypothetical protein/predicted DNA‑binding transcriptional regulator
* ? AP009048 713380 =55 (0.680)237 (3.170) 86/90 NT 82.5% intergenic (‑156/‑29) ybfF/seqA conserved hypothetical protein/regulatory protein for replication initiation
?AP009048 = 4125338 50 (0.670)coding (836/837 nt) dam DNA adenine methylase
* ? AP009048 = 71395490 (1.110)383 (4.700) 97/98 NT 82.1% coding (546/546 nt) seqA regulatory protein for replication initiation
?AP009048 2809398 = 77 (0.950)intergenic (+63/‑28) ygaH/mprA predicted inner membrane protein/DNA‑binding transcriptional regulator
* ? AP009048 = 752914142 (1.740)8 (0.110) 3/90 NT 5.8% coding (304/567 nt) ybgD predicted fimbrial‑like adhesin protein
?AP009048 = 752933 129 (1.730)coding (285/567 nt) ybgD predicted fimbrial‑like adhesin protein
* ? AP009048 = 78641980 (0.980)7 (0.090) 3/90 NT 8.4% coding (365/1053 nt) aroG 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible
?AP009048 = 786431 79 (1.060)coding (377/1053 nt) aroG 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible
* ? AP009048 = 84615269 (0.850)7 (0.110)
+TTTATGCGTTT		 3/76 NT 10.2% intergenic (‑250/+11) ybiO/glnQ predicted mechanosensitive channel/glutamine transporter subunit
?AP009048 2944517 = 90 (1.110)intergenic (‑19/+220) ygdL/mltA conserved hypothetical protein/membrane‑bound lytic murein transglycosylase A
* ? AP009048 = 86079969 (0.850)6 (0.080) 5/88 NT 8.5% coding (2230/2433 nt) ybiW predicted pyruvate formate lyase
?AP009048 = 860811 68 (0.930)coding (2218/2433 nt) ybiW predicted pyruvate formate lyase
* ? AP009048 = 87012943 (0.530)3 (0.040) 3/88 NT 7.5% coding (297/1539 nt) yliB predicted peptide transporter subunit
?AP009048 = 870168 35 (0.480)coding (336/1539 nt) yliB predicted peptide transporter subunit
* ? AP009048 = 87137466 (0.810)6 (0.080) 3/86 NT 9.4% intergenic (+3/‑15) yliB/yliC predicted peptide transporter subunit/predicted peptide transporter subunit
?AP009048 = 871389 58 (0.810)coding (1/921 nt) yliC predicted peptide transporter subunit
* ? AP009048 902702 =52 (0.640)3 (0.040) 3/86 NT 7.0% coding (709/732 nt) artI arginine transporter subunit
?AP009048 902725 = 34 (0.480)coding (686/732 nt) artI arginine transporter subunit
* ? AP009048 914231 =82 (1.010)4 (0.060) 3/84 NT 7.3% coding (6/1653 nt) hcp hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases
?AP009048 914275 = 31 (0.440)intergenic (‑39/+105) hcp/ybjE hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases/predicted transporter
* ? AP009048 = 924547112 (1.380)10 (0.130) 5/94 NT 8.3% coding (862/2277 nt) clpA ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity
?AP009048 = 924563 114 (1.460)coding (878/2277 nt) clpA ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity
* ? AP009048 = 926400NA (NA)7 (0.090) 3/98 NT 10.1% intergenic (‑7/+247) serW/infA tRNA‑Ser/translation initiation factor IF‑1
?AP009048 = 1097921 62 (0.760)intergenic (‑28/‑206) serX/ycdW tRNA‑Ser/2‑ketoacid reductase
* ? AP009048 943798 =94 (1.150)7 (0.090) 3/96 NT 7.8% coding (2418/2445 nt) dmsA dimethyl sulfoxide reductase, anaerobic, subunit A
?AP009048 943824 = 73 (0.920)coding (2444/2445 nt) dmsA dimethyl sulfoxide reductase, anaerobic, subunit A
* ? AP009048 = 95625288 (1.080)8 (0.110) 5/88 NT 9.2% coding (803/1761 nt) ycaO conserved hypothetical protein
?AP009048 = 956270 78 (1.070)coding (785/1761 nt) ycaO conserved hypothetical protein
* ? AP009048 971038 =51 (0.630)7 (0.100) 4/82 NT 15.6% coding (1228/1233 nt) ycaQ conserved hypothetical protein
?AP009048 971066 = 33 (0.480)intergenic (+23/‑29) ycaQ/ycaR conserved hypothetical protein/conserved hypothetical protein
* ? AP009048 = 98135975 (0.920)4 (0.060) 3/84 NT 5.3% intergenic (+151/‑110) mukB/ycbB fused chromosome partitioning proteins/predicted carboxypeptidase
?AP009048 = 981367 80 (1.150)intergenic (+159/‑102) mukB/ycbB fused chromosome partitioning proteins/predicted carboxypeptidase
* ? AP009048 = 99340275 (0.920)5 (0.070) 3/88 NT 6.7% coding (2359/2613 nt) pepN aminopeptidase N
?AP009048 = 993418 73 (1.000)coding (2375/2613 nt) pepN aminopeptidase N
* ? AP009048 1010158 =60 (0.740)4 (0.060) 3/84 NT 7.9% coding (1893/2109 nt) ycbY predicted methyltransferase
?AP009048 1010181 = 42 (0.600)coding (1916/2109 nt) ycbY predicted methyltransferase
* ? AP009048 = 101891967 (0.820)4 (0.050) 4/90 NT 6.4% coding (13/453 nt) ycbG conserved hypothetical protein
?AP009048 = 1018940 55 (0.740)coding (34/453 nt) ycbG conserved hypothetical protein
* ? AP009048 = 1152045110 (1.350)5 (0.070) 3/88 NT 5.2% coding (741/930 nt) fabD malonyl‑CoA‑[acyl‑carrier‑protein] transacylase
?AP009048 = 1152069 83 (1.140)coding (765/930 nt) fabD malonyl‑CoA‑[acyl‑carrier‑protein] transacylase
* ? AP009048 1169738 =47 (0.580)4 (0.060) 3/82 NT 11.2% intergenic (+23/+39) ycfJ/ycfQ hypothetical protein/predicted DNA‑binding transcriptional regulator
?AP009048 1169765 = 24 (0.350)intergenic (+50/+12) ycfJ/ycfQ hypothetical protein/predicted DNA‑binding transcriptional regulator
* ? AP009048 1201979 =125 (1.540)8 (0.110) 3/88 NT 6.4% coding (405/1128 nt) intE predicted integrase
?AP009048 1202003 = 121 (1.650)coding (381/1128 nt) intE predicted integrase
* ? AP009048 1209367 =20 (0.250)31 (0.570) 21/66 NT 67.0% coding (290/630 nt) ycfK hypothetical protein
?AP009048 1211196 = 17 (0.310)pseudogene (37/537 nt) stfE ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment
* ? AP009048 = 120938221 (0.260)27 (0.490) 19/66 NT 63.4% coding (305/630 nt) ycfK hypothetical protein
?AP009048 = 1211179 17 (0.310)pseudogene (54/537 nt) stfE ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment
* ? AP009048 = 122772077 (0.950)10 (0.150) 4/80 NT 12.5% intergenic (‑63/‑457) minC/ycgJ cell division inhibitor/hypothetical protein
?AP009048 = 1227726 77 (1.160)intergenic (‑69/‑451) minC/ycgJ cell division inhibitor/hypothetical protein
* ? AP009048 = 124164252 (0.640)6 (0.100) 3/76 NT 12.1% intergenic (+116/+270) dadX/cvrA alanine racemase 2, PLP‑binding/predicted cation/proton antiporter
?AP009048 = 1241649 47 (0.740)intergenic (+123/+263) dadX/cvrA alanine racemase 2, PLP‑binding/predicted cation/proton antiporter
* ? AP009048 1243092 =116 (1.420)10 (0.140) 4/84 NT 9.9% coding (557/1737 nt) cvrA predicted cation/proton antiporter
?AP009048 1243124 = 82 (1.170)coding (525/1737 nt) cvrA predicted cation/proton antiporter
* ? AP009048 = 128129127 (0.330)5 (0.070) 4/86 NT 12.1% intergenic (+366/‑150) narK/narG nitrate/nitrite transporter/nitrate reductase 1, alpha subunit
?AP009048 = 1281300 49 (0.690)intergenic (+375/‑141) narK/narG nitrate/nitrite transporter/nitrate reductase 1, alpha subunit
* ? AP009048 1284510 =98 (1.200)6 (0.080) 3/90 NT 6.3% coding (3070/3744 nt) narG nitrate reductase 1, alpha subunit
?AP009048 1284531 = 87 (1.160)coding (3091/3744 nt) narG nitrate reductase 1, alpha subunit
* ? AP009048 1299486 =59 (0.720)4 (0.060) 3/86 NT 6.8% coding (213/2676 nt) adhE fused acetaldehyde‑CoA dehydrogenase and iron‑dependent alcohol dehydrogenase and pyruvate‑formate lyase deactivase
?AP009048 1299507 = 58 (0.810)coding (192/2676 nt) adhE fused acetaldehyde‑CoA dehydrogenase and iron‑dependent alcohol dehydrogenase and pyruvate‑formate lyase deactivase
* ? AP009048 1356225 =89 (1.090)11 (0.150) 3/88 NT 11.8% coding (8/891 nt)
coding (960/966 nt)		 sapC
sapB		 predicted antimicrobial peptide transporter subunit
predicted antimicrobial peptide transporter subunit
?AP009048 1356244 = 84 (1.150)coding (941/966 nt) sapB predicted antimicrobial peptide transporter subunit
* ? AP009048 = 137630060 (0.740)6 (0.080) 4/86 NT 10.4% coding (497/843 nt) ycjP predicted sugar transporter subunit
?AP009048 = 1376317 51 (0.710)coding (514/843 nt) ycjP predicted sugar transporter subunit
* ? AP009048 = 137935278 (0.960)11 (0.160) 5/84 NT 13.9% coding (807/1056 nt) ycjS predicted oxidoreductase, NADH‑binding
?AP009048 = 1379361 69 (0.990)coding (816/1056 nt) ycjS predicted oxidoreductase, NADH‑binding
* ? AP009048 1401345 =60 (0.740)9 (0.120) 5/88 NT 16.7% intergenic (‑105/+90) fnr/ogt DNA‑binding transcriptional dual regulator, global regulator of anaerobic growth/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase
?AP009048 1401365 = 36 (0.490)intergenic (‑125/+70) fnr/ogt DNA‑binding transcriptional dual regulator, global regulator of anaerobic growth/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase
* ? AP009048 1419105 =56 (0.690)5 (0.070) 3/86 NT 8.7% intergenic (‑5/+97) recE/racC exonuclease VIII, 5' ‑> 3' specific dsDNA exonuclease/hypothetical protein
?AP009048 1419129 = 56 (0.780)intergenic (‑29/+73) recE/racC exonuclease VIII, 5' ‑> 3' specific dsDNA exonuclease/hypothetical protein
* ? AP009048 1421954 =121 (1.490)6 (0.080) 4/88 NT 5.7% coding (2/477 nt) racR predicted DNA‑binding transcriptional regulator
?AP009048 1421993 = 90 (1.230)intergenic (‑38/‑86) racR/ydaS predicted DNA‑binding transcriptional regulator/predicted DNA‑binding transcriptional regulator
* ? AP009048 = 148624638 (0.470)8 (0.110) 5/88 NT 16.8% coding (1415/3846 nt) hrpA ATP‑dependent helicase
?AP009048 = 1486267 45 (0.620)coding (1436/3846 nt) hrpA ATP‑dependent helicase
* ? AP009048 = 149753468 (0.840)5 (0.070) 3/88 NT 7.1% coding (533/1344 nt) ydcJ conserved hypothetical protein
?AP009048 = 1497540 69 (0.940)coding (539/1344 nt) ydcJ conserved hypothetical protein
* ? AP009048 = 150100749 (0.600)8 (0.110) 3/90 NT 13.1% coding (356/540 nt) rimL ribosomal‑protein‑L7/L12‑serine acetyltransferase
?AP009048 = 1501025 61 (0.820)coding (374/540 nt) rimL ribosomal‑protein‑L7/L12‑serine acetyltransferase
* ? AP009048 = 150928766 (0.810)4 (0.050) 3/90 NT 5.6% coding (793/1962 nt) ydcP predicted peptidase
?AP009048 = 1509300 73 (0.980)coding (806/1962 nt) ydcP predicted peptidase
* ? AP009048 = 151597054 (0.660)9 (0.120) 3/90 NT 13.4% coding (426/942 nt) ydcU predicted spermidine/putrescine transporter subunit
?AP009048 = 1515984 67 (0.900)coding (440/942 nt) ydcU predicted spermidine/putrescine transporter subunit
* ? AP009048 = 1523049102 (1.250)13 (0.170) 5/92 NT 12.5% coding (1731/2103 nt) yncD predicted iron outer membrane transporter
?AP009048 = 1523065 86 (1.130)coding (1715/2103 nt) yncD predicted iron outer membrane transporter
* ? AP009048 1533752 =NA (NA)8 (0.110) 4/86 NT 17.5% coding (223/1137 nt) ydcC conserved hypothetical protein
?AP009048 = 4015842 43 (0.530)coding (196/1137 nt) yhhI predicted transposase
* ? AP009048 = 155065156 (0.690)3 (0.040) 3/84 NT 5.0% coding (1537/3048 nt) fdnG formate dehydrogenase‑N, alpha subunit, nitrate‑inducible
?AP009048 = 1550666 66 (0.950)coding (1552/3048 nt) fdnG formate dehydrogenase‑N, alpha subunit, nitrate‑inducible
* ? AP009048 1561486 =103 (1.260)11 (0.150) 3/86 NT 11.3% coding (139/897 nt) ddpC D‑Ala‑D‑Ala transporter subunit
?AP009048 1561513 = 83 (1.160)coding (112/897 nt) ddpC D‑Ala‑D‑Ala transporter subunit
* ? AP009048 1591954 =98 (1.200)8 (0.110) 4/90 NT 8.3% intergenic (‑239/+117) ydeT/yneL hypothetical protein/predicted transcriptional regulator
?AP009048 1591980 = 87 (1.160)intergenic (‑265/+91) ydeT/yneL hypothetical protein/predicted transcriptional regulator
* ? AP009048 = 160314861 (0.750)5 (0.080) 3/80 NT 7.6% intergenic (‑193/‑56) ydeW/ego predicted DNA‑binding transcriptional regulator/fused AI2 transporter subunits and ATP‑binding components of ABC superfamily
?AP009048 = 1603163 71 (1.070)intergenic (‑208/‑41) ydeW/ego predicted DNA‑binding transcriptional regulator/fused AI2 transporter subunits and ATP‑binding components of ABC superfamily
* ? AP009048 = 160974760 (0.740)3 (0.050) 3/80 NT 5.4% coding (688/759 nt) tam trans‑aconitate methyltransferase
?AP009048 = 1609766 56 (0.840)coding (707/759 nt) tam trans‑aconitate methyltransferase
* ? AP009048 1614648 =84 (1.030)6 (0.080) 3/94 NT 6.6% coding (318/927 nt) yneH predicted glutaminase
?AP009048 1614673 = 90 (1.150)coding (293/927 nt) yneH predicted glutaminase
* ? AP009048 1629069 =70 (0.860)4 (0.050) 3/90 NT 5.3% coding (26/2046 nt) dcp dipeptidyl carboxypeptidase II
?AP009048 1629089 = 78 (1.040)coding (6/2046 nt) dcp dipeptidyl carboxypeptidase II
* ? AP009048 1650721 =62 (0.760)7 (0.090) 4/92 NT 11.1% coding (185/219 nt) ydfC hypothetical protein
?AP009048 1650742 = 54 (0.710)coding (206/219 nt) ydfC hypothetical protein
* ? AP009048 1659087 =72 (0.880)7 (0.090) 3/92 NT 8.5% coding (85/711 nt) ynfC hypothetical protein
?AP009048 1659114 = 84 (1.100)coding (58/711 nt) ynfC hypothetical protein
* ? AP009048 = 173072479 (0.970)4 (0.060) 4/80 NT 5.0% intergenic (+16/‑77) rnt/lhr ribonuclease T (RNase T)/predicted ATP‑dependent helicase
?AP009048 = 1730738 87 (1.310)intergenic (+30/‑63) rnt/lhr ribonuclease T (RNase T)/predicted ATP‑dependent helicase
* ? AP009048 1854251 =53 (0.650)5 (0.080) 3/76 NT 14.1% intergenic (+9/+84) pncA/ydjE nicotinamidase/pyrazinamidase/predicted transporter
?AP009048 1854284 = 20 (0.320)intergenic (+42/+51) pncA/ydjE nicotinamidase/pyrazinamidase/predicted transporter
* ? AP009048 1874574 =68 (0.840)7 (0.100) 4/86 NT 10.4% coding (820/1491 nt) yeaJ predicted diguanylate cyclase
?AP009048 1874601 = 61 (0.850)coding (847/1491 nt) yeaJ predicted diguanylate cyclase
* ? AP009048 1900342 =100 (1.230)9 (0.120) 3/90 NT 9.9% coding (202/1599 nt) yoaD predicted phosphodiesterase
?AP009048 1900362 = 72 (0.960)coding (222/1599 nt) yoaD predicted phosphodiesterase
* ? AP009048 1908905 =93 (1.140)10 (0.140) 5/88 NT 10.7% intergenic (‑131/+35) rrmA/cspC 23S rRNA m1G745 methyltransferase/stress protein, member of the CspA‑family
?AP009048 1908925 = 83 (1.140)intergenic (‑151/+15) rrmA/cspC 23S rRNA m1G745 methyltransferase/stress protein, member of the CspA‑family
* ? AP009048 = 196193987 (1.070)8 (0.110) 3/88 NT 9.4% coding (164/1734 nt) argS arginyl‑tRNA synthetase
?AP009048 = 1961957 76 (1.040)coding (182/1734 nt) argS arginyl‑tRNA synthetase
* ? AP009048 2001716 =73 (0.900)7 (0.100) 3/84 NT 10.3% intergenic (‑99/+6) yedO/fliY D‑cysteine desulfhydrase, PLP‑dependent/cystine transporter subunit
?AP009048 2001741 = 60 (0.860)coding (782/801 nt) fliY cystine transporter subunit
* ? AP009048 = 201029351 (0.630)3 (0.040) 3/90 NT 6.5% intergenic (‑66/‑121) yedD/yedE hypothetical protein/predicted inner membrane protein
?AP009048 = 2010308 39 (0.520)intergenic (‑81/‑106) yedD/yedE hypothetical protein/predicted inner membrane protein
* ? AP009048 2018571 =9 (0.110)53 (0.690) 35/92 NT 86.3% coding (567/687 nt) fliH flagellar biosynthesis protein
?AP009048 2519723 = NA (NA)intergenic (+33/‑54) nupC/insL nucleoside (except guanosine) transporter/predicted transposase
* ? AP009048 = 20185833 (0.040)75 (0.960) 45/94 NT 96.3% coding (579/687 nt) fliH flagellar biosynthesis protein
?AP009048 = 2521059 NA (NA)intergenic (+170/+30) insL/yfeA predicted transposase/predicted diguanylate cyclase
* ? AP009048 = 2053057112 (1.380)10 (0.140) 4/88 NT 8.2% coding (6010/7104 nt) yeeJ adhesin
?AP009048 = 2053070 124 (1.700)coding (6023/7104 nt) yeeJ adhesin
* ? AP009048 = 207074566 (0.810)4 (0.050) 3/88 NT 6.3% intergenic (‑1287/‑27) insH/yoeA IS5 transposase and trans‑activator/CP4‑44 prophage region; ECK1989:JW5326:b1995; predicted disrupted hemin or colicin receptor
?AP009048 = 2070758 60 (0.820)intergenic (‑1300/‑14) insH/yoeA IS5 transposase and trans‑activator/CP4‑44 prophage region; ECK1989:JW5326:b1995; predicted disrupted hemin or colicin receptor
* ? AP009048 2091714 =67 (0.820)4 (0.050) 4/90 NT 6.3% coding (137/252 nt) yefM antitoxin of the YoeB‑YefM toxin‑antitoxin system
?AP009048 2091744 = 58 (0.780)coding (107/252 nt) yefM antitoxin of the YoeB‑YefM toxin‑antitoxin system
* ? AP009048 2116525 =73 (0.900)7 (0.100) 4/84 NT 9.3% intergenic (‑61/+114) galF/wcaM predicted subunit with GalU/predicted colanic acid biosynthesis protein
?AP009048 2116545 = 74 (1.060)intergenic (‑81/+94) galF/wcaM predicted subunit with GalU/predicted colanic acid biosynthesis protein
* ? AP009048 2155855 =81 (0.990)15 (0.210) 5/84 NT 18.5% intergenic (‑590/‑298) yegL/mdtA conserved hypothetical protein/multidrug efflux system, subunit A
?AP009048 2155875 = 63 (0.900)intergenic (‑610/‑278) yegL/mdtA conserved hypothetical protein/multidrug efflux system, subunit A
* ? AP009048 2172308 =NA (NA)127 (1.590) 63/96 NT 100% pseudogene (1563/2041 nt) gatR DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
?AP009048 = 3920279 0 (0.000)coding (88/213 nt) cspA major cold shock protein
* ? AP009048 = 2173564NA (NA)120 (1.500) 50/96 NT 100% pseudogene (307/2041 nt)
pseudogene (307/339 nt)		 gatR
gatR		 DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
?AP009048 3920276 = 0 (0.000)coding (91/213 nt) cspA major cold shock protein
* ? AP009048 = 2173565NA (NA)83 (1.020) 49/98 NT 100% pseudogene (306/2041 nt)
pseudogene (306/339 nt)		 gatR
gatR		 DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
?AP009048 = 3932931 0 (0.000)coding (222/1608 nt) dppA dipeptide transporter
* ? AP009048 = 217863359 (0.720)4 (0.060) 3/86 NT 6.9% coding (1023/1263 nt) gatZ D‑tagatose 1,6‑bisphosphate aldolase 2, subunit
?AP009048 = 2178648 57 (0.800)coding (1008/1263 nt) gatZ D‑tagatose 1,6‑bisphosphate aldolase 2, subunit
* ? AP009048 = 222706380 (0.980)8 (0.110) 4/88 NT 10.6% coding (1545/1716 nt) dld D‑lactate dehydrogenase, FAD‑binding, NADH independent
?AP009048 = 2227072 63 (0.860)coding (1554/1716 nt) dld D‑lactate dehydrogenase, FAD‑binding, NADH independent
* ? AP009048 2373316 =83 (1.020)8 (0.110) 5/86 NT 10.7% coding (608/1983 nt) yfbG fused UDP‑L‑Ara4N formyltransferase and UDP‑GlcA C‑4'‑decarboxylase
?AP009048 2373355 = 61 (0.850)coding (647/1983 nt) yfbG fused UDP‑L‑Ara4N formyltransferase and UDP‑GlcA C‑4'‑decarboxylase
* ? AP009048 = 238744949 (0.600)3 (0.040) 3/88 NT 5.4% coding (67/1212 nt) elaD hypothetical protein
?AP009048 = 2387475 62 (0.850)coding (93/1212 nt) elaD hypothetical protein
* ? AP009048 = 2412225NA (NA)105 (1.290) 48/98 NT 93.8% intergenic (‑55/‑782) insA/yfbQ IS1 element protein/predicted aminotransferase
?AP009048 = 3748805 7 (0.090)coding (176/984 nt) tnaB tryptophan transporter of low affinity
* ? AP009048 2418819 =94 (1.150)10 (0.130) 3/94 NT 9.6% intergenic (‑241/‑97) yfbV/ackA conserved inner membrane protein/acetate kinase A and propionate kinase 2
?AP009048 2418861 = 98 (1.250)intergenic (‑283/‑55) yfbV/ackA conserved inner membrane protein/acetate kinase A and propionate kinase 2
* ? AP009048 = 243380941 (0.500)4 (0.050) 3/88 NT 7.9% coding (264/570 nt) ubiX 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
?AP009048 = 2433820 57 (0.780)coding (253/570 nt) ubiX 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
* ? AP009048 2469854 =75 (0.920)9 (0.120) 4/90 NT 13.9% coding (600/756 nt) vacJ predicted lipoprotein
?AP009048 2469887 = 43 (0.580)coding (567/756 nt) vacJ predicted lipoprotein
* ? AP009048 = 248311255 (0.680)7 (0.100) 3/88 NT 11.2% intergenic (‑37/‑181) dsdC/dsdX DNA‑binding transcriptional dual regulator/predicted transporter
?AP009048 = 2483124 62 (0.850)intergenic (‑49/‑169) dsdC/dsdX DNA‑binding transcriptional dual regulator/predicted transporter
* ? AP009048 2488824 =98 (1.200)5 (0.070) 3/84 NT 5.8% intergenic (‑39/‑377) emrK/evgA EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS
?AP009048 2488845 = 79 (1.130)intergenic (‑60/‑356) emrK/evgA EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS
* ? AP009048 = 250005562 (0.760)8 (0.110) 4/86 NT 10.2% intergenic (‑207/‑89) yfdX/ypdI hypothetical protein/predicted lipoprotein involved in colanic acid biosynthesis
?AP009048 = 2500081 87 (1.220)intergenic (‑233/‑63) yfdX/ypdI hypothetical protein/predicted lipoprotein involved in colanic acid biosynthesis
* ? AP009048 2505754 =44 (0.540)7 (0.100) 4/86 NT 14.3% coding (1638/1698 nt) ypdA predicted sensory kinase in two‑component system with YpdB
?AP009048 2505780 = 45 (0.630)coding (1664/1698 nt) ypdA predicted sensory kinase in two‑component system with YpdB
* ? AP009048 = 250586172 (0.880)4 (0.060) 4/86 NT 5.8% coding (33/735 nt) ypdB predicted response regulator in two‑component system withYpdA
?AP009048 = 2505867 66 (0.920)coding (39/735 nt) ypdB predicted response regulator in two‑component system withYpdA
* ? AP009048 2506069 =88 (1.080)5 (0.070) 3/88 NT 6.6% coding (241/735 nt) ypdB predicted response regulator in two‑component system withYpdA
?AP009048 2506092 = 63 (0.860)coding (264/735 nt) ypdB predicted response regulator in two‑component system withYpdA
* ? AP009048 = 251817396 (1.180)6 (0.090) 3/80 NT 7.0% intergenic (‑21/‑315) mntH/nupC manganese/divalent cation transporter/nucleoside (except guanosine) transporter
?AP009048 = 2518177 80 (1.200)intergenic (‑25/‑311) mntH/nupC manganese/divalent cation transporter/nucleoside (except guanosine) transporter
* ? AP009048 2572129 =51 (0.630)6 (0.080) 3/88 NT 10.3% coding (33/1017 nt) eutI predicted phosphotransacetylase subunit
?AP009048 2572182 = 59 (0.810)coding (780/804 nt) eutT predicted cobalamin adenosyltransferase in ethanolamine utilization
* ? AP009048 = 258077666 (0.810)8 (0.110) 3/88 NT 10.9% coding (658/1044 nt) ypfG hypothetical protein
?AP009048 = 2580795 71 (0.970)coding (639/1044 nt) ypfG hypothetical protein
* ? AP009048 2593624 =56 (0.690)9 (0.130) 6/86 NT 11.5% coding (892/2016 nt) ypfI predicted hydrolase
?AP009048 2593665 = 90 (1.260)coding (851/2016 nt) ypfI predicted hydrolase
* ? AP009048 = 272451357 (0.700)3 (0.040) 3/84 NT 5.3% intergenic (‑111/+212) kgtP/rrfG alpha‑ketoglutarate transporter/5S ribosomal RNA
?AP009048 = 2724532 58 (0.830)intergenic (‑130/+193) kgtP/rrfG alpha‑ketoglutarate transporter/5S ribosomal RNA
* ? AP009048 = 2728810NA (NA)13 (0.170) 3/92 NT NA noncoding (1004/1542 nt) rrsG 16S ribosomal RNA
?AP009048 = 2728831 NA (NA)noncoding (983/1542 nt) rrsG 16S ribosomal RNA
* ? AP009048 = 2728864NA (NA)13 (0.170) 10/90 NT NA noncoding (950/1542 nt) rrsG 16S ribosomal RNA
?AP009048 = 2728876 NA (NA)noncoding (938/1542 nt) rrsG 16S ribosomal RNA
* ? AP009048 = 273287073 (0.900)5 (0.070) 4/92 NT 6.1% intergenic (‑41/+89) clpB/yfiH protein disaggregation chaperone/conserved hypothetical protein
?AP009048 = 2732887 85 (1.110)intergenic (‑58/+72) clpB/yfiH protein disaggregation chaperone/conserved hypothetical protein
* ? AP009048 2761456 =71 (0.870)6 (0.090) 4/84 NT 8.6% coding (741/2190 nt) yfjK conserved hypothetical protein
?AP009048 2761483 = 67 (0.960)coding (714/2190 nt) yfjK conserved hypothetical protein
* ? AP009048 2763935 =79 (0.970)5 (0.070) 3/88 NT 6.5% intergenic (‑126/+234) yfjL/yfjM hypothetical protein/hypothetical protein
?AP009048 2763964 = 73 (1.000)intergenic (‑155/+205) yfjL/yfjM hypothetical protein/hypothetical protein
* ? AP009048 2817848 =57 (0.700)6 (0.070) 4/98 NT 7.2% intergenic (‑46/+189) csrA/alaS pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase
?AP009048 2817873 = 97 (1.190)intergenic (‑71/+164) csrA/alaS pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase
* ? AP009048 2825421 =78 (0.960)4 (0.050) 4/92 NT 5.1% coding (374/960 nt) srlE glucitol/sorbitol‑specific enzyme IIB component of PTS
?AP009048 2825445 = 75 (0.980)coding (398/960 nt) srlE glucitol/sorbitol‑specific enzyme IIB component of PTS
* ? AP009048 2831659 =126 (1.550)6 (0.080) 4/90 NT 5.3% coding (528/1440 nt) norV flavorubredoxin oxidoreductase
?AP009048 2831685 = 100 (1.340)coding (554/1440 nt) norV flavorubredoxin oxidoreductase
* ? AP009048 2891111 =49 (0.600)5 (0.070) 3/86 NT 11.4% coding (242/366 nt) ygcM 6‑pyruvoyl tetrahydrobiopterin synthase
?AP009048 2891133 = 35 (0.490)coding (264/366 nt) ygcM 6‑pyruvoyl tetrahydrobiopterin synthase
* ? AP009048 2926678 =58 (0.710)12 (0.180) 5/82 NT 18.8% intergenic (+350/‑207) ygdH/sdaC conserved hypothetical protein/predicted serine transporter
?AP009048 2926703 = 55 (0.810)intergenic (+375/‑182) ygdH/sdaC conserved hypothetical protein/predicted serine transporter
* ? AP009048 2931388 =62 (0.760)6 (0.090) 3/84 NT 11.2% coding (285/1152 nt) fucO L‑1,2‑propanediol oxidoreductase
?AP009048 2931418 = 42 (0.600)coding (255/1152 nt) fucO L‑1,2‑propanediol oxidoreductase
* ? AP009048 2934479 =112 (1.380)8 (0.110) 3/90 NT 6.8% coding (240/1776 nt) fucI L‑fucose isomerase
?AP009048 2934504 = 116 (1.550)coding (265/1776 nt) fucI L‑fucose isomerase
* ? AP009048 = 2943244103 (1.260)10 (0.140) 3/86 NT 9.5% coding (47/444 nt) ygdK predicted Fe‑S metabolism protein
?AP009048 = 2943253 101 (1.410)coding (56/444 nt) ygdK predicted Fe‑S metabolism protein
* ? AP009048 2989729 =121 (1.490)11 (0.160) 4/84 NT 9.8% intergenic (+73/‑195) ygeF/ygeG hypothetical protein/predicted chaperone
?AP009048 2989750 = 99 (1.420)intergenic (+94/‑174) ygeF/ygeG hypothetical protein/predicted chaperone
* ? AP009048 = 299284573 (0.900)4 (0.060) 4/86 NT 5.1% pseudogene (149/375 nt) pbl ECK2852:JW5457:b2854; predicted peptidoglycan‑binding enzyme
?AP009048 = 2992861 86 (1.200)pseudogene (165/375 nt) pbl ECK2852:JW5457:b2854; predicted peptidoglycan‑binding enzyme
* ? AP009048 = 303714683 (1.020)13 (0.190) 5/84 NT 15.3% coding (333/711 nt) dsbC protein disulfide isomerase II
?AP009048 = 3037153 73 (1.050)coding (326/711 nt) dsbC protein disulfide isomerase II
* ? AP009048 = 3064697156 (1.920)18 (0.230) 8/94 NT 11.2% coding (1240/1479 nt) ygfH propionyl‑CoA:succinate‑CoA transferase
?AP009048 = 3064731 136 (1.740)coding (1274/1479 nt) ygfH propionyl‑CoA:succinate‑CoA transferase
* ? AP009048 = 3121192130 (1.600)8 (0.100) 3/92 NT 6.2% coding (1270/2172 nt) glcB malate synthase G
?AP009048 = 3121207 120 (1.570)coding (1255/2172 nt) glcB malate synthase G
* ? AP009048 3135609 =106 (1.300)9 (0.120) 3/90 NT 9.4% coding (1570/1860 nt) gss fused glutathionylspermidine amidase and glutathionylspermidine synthetase
?AP009048 3135649 = 77 (1.030)coding (1530/1860 nt) gss fused glutathionylspermidine amidase and glutathionylspermidine synthetase
* ? AP009048 3141945 =118 (1.450)9 (0.130) 3/86 NT 8.4% coding (876/1179 nt) hybB predicted hydrogenase 2 cytochrome b type component
?AP009048 3141978 = 92 (1.290)coding (843/1179 nt) hybB predicted hydrogenase 2 cytochrome b type component
* ? AP009048 3176034 =117 (1.440)7 (0.100) 6/88 NT 6.0% coding (533/630 nt) nudF ADP‑ribose pyrophosphatase
?AP009048 3176059 = 115 (1.570)coding (508/630 nt) nudF ADP‑ribose pyrophosphatase
* ? AP009048 = 3188046117 (1.440)6 (0.090) 3/84 NT 5.9% coding (1991/2466 nt) yqiG predicted outer membrane usher protein
?AP009048 = 3188089 91 (1.300)coding (2034/2466 nt) yqiG predicted outer membrane usher protein
* ? AP009048 = 319130481 (0.990)6 (0.080) 3/86 NT 7.4% coding (441/630 nt) yqiJ predicted inner membrane protein
?AP009048 = 3191322 80 (1.120)coding (459/630 nt) yqiJ predicted inner membrane protein
* ? AP009048 = 319295983 (1.020)8 (0.110) 4/86 NT 9.7% coding (1440/1662 nt) yqiK conserved hypothetical protein
?AP009048 = 3192968 76 (1.060)coding (1449/1662 nt) yqiK conserved hypothetical protein
* ? AP009048 3222373 =135 (1.660)7 (0.100) 3/84 NT 5.9% coding (1085/3093 nt) ebgA cryptic beta‑D‑galactosidase, alpha subunit
?AP009048 3222400 = 106 (1.520)coding (1112/3093 nt) ebgA cryptic beta‑D‑galactosidase, alpha subunit
* ? AP009048 = 322449895 (1.170)6 (0.080) 3/88 NT 7.3% coding (121/450 nt) ebgC cryptic beta‑D‑galactosidase, beta subunit
?AP009048 = 3224522 67 (0.920)coding (145/450 nt) ebgC cryptic beta‑D‑galactosidase, beta subunit
* ? AP009048 = 322956582 (1.010)16 (0.220) 5/86 NT 18.9% coding (2022/2352 nt) ygjK predicted glycosyl hydrolase
?AP009048 = 3229588 65 (0.910)coding (2045/2352 nt) ygjK predicted glycosyl hydrolase
* ? AP009048 = 32611330 (0.000)46 (0.620) 33/90 NT 100% intergenic (‑59/‑69) tdcE/insH pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein
?AP009048 3262333 = 0 (0.000)coding (1183/1296 nt) tdcD propionate kinase/acetate kinase C, anaerobic
* ? AP009048 3291382 =119 (1.460)6 (0.080) 4/90 NT 5.2% coding (187/1092 nt) yraK predicted fimbrial‑like adhesin protein
?AP009048 3291413 = 111 (1.480)coding (218/1092 nt) yraK predicted fimbrial‑like adhesin protein
* ? AP009048 3315184 =126 (1.550)6 (0.080) 3/86 NT 6.4% coding (686/2673 nt) infB fused protein chain initiation factor 2, IF2
?AP009048 3315223 = 66 (0.920)coding (647/2673 nt) infB fused protein chain initiation factor 2, IF2
* ? AP009048 = 3319085105 (1.290)8 (0.110) 5/90 NT 7.5% coding (594/1344 nt) argG argininosuccinate synthetase
?AP009048 = 3319098 102 (1.360)coding (607/1344 nt) argG argininosuccinate synthetase
* ? AP009048 3384262 =163 (2.000)7 (0.100) 4/88 NT 5.4% intergenic (‑139/‑296) mdh/argR malate dehydrogenase, NAD(P)‑binding/DNA‑binding transcriptional dual regulator, L‑arginine‑binding
?AP009048 3384285 = 101 (1.380)intergenic (‑162/‑273) mdh/argR malate dehydrogenase, NAD(P)‑binding/DNA‑binding transcriptional dual regulator, L‑arginine‑binding
* ? AP009048 = 3396397101 (1.240)8 (0.100) 3/96 NT 7.3% coding (1254/1470 nt) rng ribonuclease G
?AP009048 = 3396428 103 (1.290)coding (1223/1470 nt) rng ribonuclease G
* ? AP009048 3459685 =NA (NA)6 (0.090) 4/84 NT NA coding (1053/1185 nt) tufB protein chain elongation factor EF‑Tu
?AP009048 3459719 = NA (NA)coding (1019/1185 nt) tufB protein chain elongation factor EF‑Tu
* ? AP009048 = 3462865113 (1.390)6 (0.080) 3/86 NT 6.1% coding (735/966 nt) birA bifunctional biotin‑[acetylCoA carboxylase] holoenzyme synthetase and DNA‑binding transcriptional repressor, bio‑5'‑AMP‑binding
?AP009048 = 3462891 84 (1.180)coding (709/966 nt) birA bifunctional biotin‑[acetylCoA carboxylase] holoenzyme synthetase and DNA‑binding transcriptional repressor, bio‑5'‑AMP‑binding
* ? AP009048 3473734 =93 (1.140)7 (0.100) 5/84 NT 9.4% coding (324/1101 nt) trmA tRNA (uracil‑5‑)‑methyltransferase
?AP009048 3473761 = 56 (0.800)coding (351/1101 nt) trmA tRNA (uracil‑5‑)‑methyltransferase
* ? AP009048 = 347430063 (0.770)6 (0.090) 3/82 NT 11.5% coding (890/1101 nt) trmA tRNA (uracil‑5‑)‑methyltransferase
?AP009048 = 3474340 40 (0.590)coding (930/1101 nt) trmA tRNA (uracil‑5‑)‑methyltransferase
* ? AP009048 = 348193464 (0.790)6 (0.080) 3/88 NT 9.1% coding (101/1152 nt) argE acetylornithine deacetylase
?AP009048 = 3481943 63 (0.860)coding (110/1152 nt) argE acetylornithine deacetylase
* ? AP009048 3520330 =77 (0.950)4 (0.050) 3/88 NT 5.5% coding (872/1509 nt) glpK glycerol kinase
?AP009048 3520352 = 69 (0.940)coding (894/1509 nt) glpK glycerol kinase
* ? AP009048 3563016 =50 (0.610)5 (0.070) 4/84 NT 7.9% intergenic (‑74/‑94) yihV/yihU predicted sugar kinase/predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
?AP009048 3563049 = 74 (1.060)intergenic (‑107/‑61) yihV/yihU predicted sugar kinase/predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
* ? AP009048 3575922 =54 (0.660)5 (0.070) 3/88 NT 10.0% coding (313/711 nt) yihL predicted DNA‑binding transcriptional regulator
?AP009048 3575940 = 42 (0.570)coding (295/711 nt) yihL predicted DNA‑binding transcriptional regulator
* ? AP009048 = 364963989 (1.090)9 (0.130) 3/86 NT 10.3% coding (841/1197 nt) hemY predicted protoheme IX synthesis protein
?AP009048 = 3649652 79 (1.110)coding (854/1197 nt) hemY predicted protoheme IX synthesis protein
* ? AP009048 = 366374382 (1.010)5 (0.070) 3/92 NT 6.6% coding (417/1068 nt) rffG dTDP‑glucose 4,6‑dehydratase
?AP009048 = 3663770 65 (0.850)coding (390/1068 nt) rffG dTDP‑glucose 4,6‑dehydratase
* ? AP009048 = 3677973117 (1.440)7 (0.100) 3/88 NT 5.8% coding (739/1476 nt) ilvC ketol‑acid reductoisomerase, NAD(P)‑binding
?AP009048 = 3677990 123 (1.680)coding (722/1476 nt) ilvC ketol‑acid reductoisomerase, NAD(P)‑binding
* ? AP009048 3690776 =NA (NA)5 (0.060) 4/96 NT NA noncoding (2202/2904 nt) rrlC 23S ribosomal RNA
?AP009048 3690795 = NA (NA)noncoding (2183/2904 nt) rrlC 23S ribosomal RNA
* ? AP009048 3710900 =78 (0.960)4 (0.060) 3/84 NT 6.2% intergenic (+231/‑148) mioC/gidA FMN‑binding protein MioC/glucose‑inhibited cell‑division protein
?AP009048 3710925 = 54 (0.770)intergenic (+256/‑123) mioC/gidA FMN‑binding protein MioC/glucose‑inhibited cell‑division protein
* ? AP009048 = 3711929100 (1.230)11 (0.150) 5/90 NT 11.1% coding (882/1890 nt) gidA glucose‑inhibited cell‑division protein
?AP009048 = 3711950 84 (1.120)coding (903/1890 nt) gidA glucose‑inhibited cell‑division protein
* ? AP009048 3733927 =80 (0.980)5 (0.070) 3/92 NT 6.8% coding (948/1413 nt) bglB cryptic phospho‑beta‑glucosidase B
?AP009048 3733952 = 63 (0.820)coding (973/1413 nt) bglB cryptic phospho‑beta‑glucosidase B
* ? AP009048 3734101 =137 (1.680)7 (0.100) 3/84 NT 7.1% coding (1122/1413 nt) bglB cryptic phospho‑beta‑glucosidase B
?AP009048 3734124 = 65 (0.930)coding (1145/1413 nt) bglB cryptic phospho‑beta‑glucosidase B
* ? AP009048 3748797 =3 (0.040)84 (1.030) 47/98 NT 96.6% coding (184/984 nt) tnaB tryptophan transporter of low affinity
?AP009048 4056220 = NA (NA)intergenic (‑564/+15) yrhB/insB hypothetical protein/IS1 transposase InsAB'
* ? AP009048 = 37505900 (0.000)102 (1.360) 49/90 NT 100% intergenic (‑104/‑69) tnaA/insH tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein
?AP009048 3751790 = 0 (0.000)intergenic (+151/+116) insH/tnaC IS5 element protein/tryptophanase leader peptide
* ? AP009048 3764491 =102 (1.250)6 (0.090) 3/82 NT 7.5% coding (487/657 nt) yidX predicted lipoproteinC
?AP009048 3764520 = 63 (0.920)coding (458/657 nt) yidX predicted lipoproteinC
* ? AP009048 3790746 =84 (1.030)8 (0.110) 4/86 NT 10.5% coding (468/1503 nt) uhpB sensory histidine kinase in two‑component regulatory sytem with UhpA
?AP009048 3790777 = 62 (0.870)coding (499/1503 nt) uhpB sensory histidine kinase in two‑component regulatory sytem with UhpA
* ? AP009048 3798383 =96 (1.180)11 (0.150) 4/86 NT 11.9% coding (371/453 nt) yicN conserved hypothetical protein
?AP009048 3798412 = 79 (1.110)coding (400/453 nt) yicN conserved hypothetical protein
* ? AP009048 3815064 =101 (1.240)5 (0.070) 4/90 NT 5.3% coding (142/2082 nt) recG ATP‑dependent DNA helicase
?AP009048 3815082 = 87 (1.160)coding (124/2082 nt) recG ATP‑dependent DNA helicase
* ? AP009048 3817455 =68 (0.840)4 (0.060) 3/86 NT 7.0% coding (561/2109 nt) spoT bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
?AP009048 3817482 = 46 (0.640)coding (534/2109 nt) spoT bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
* ? AP009048 = 382721795 (1.170)7 (0.090) 4/92 NT 7.5% coding (468/1221 nt) dfp fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase, FMN‑binding
?AP009048 = 3827232 84 (1.100)coding (453/1221 nt) dfp fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase, FMN‑binding
* ? AP009048 = 383316660 (0.740)7 (0.100) 4/86 NT 12.5% coding (850/1035 nt) rfaQ lipopolysaccharide core biosynthesis protein
?AP009048 = 3833181 45 (0.630)coding (865/1035 nt) rfaQ lipopolysaccharide core biosynthesis protein
* ? AP009048 = 383458482 (1.010)7 (0.100) 6/88 NT 8.8% coding (120/798 nt) rfaP kinase that phosphorylates core heptose of lipopolysaccharide
?AP009048 = 3834597 71 (0.970)coding (133/798 nt) rfaP kinase that phosphorylates core heptose of lipopolysaccharide
* ? AP009048 3836342 =94 (1.150)10 (0.140) 4/88 NT 10.8% coding (95/1110 nt) rfaB UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase
?AP009048 3836371 = 80 (1.090)coding (124/1110 nt) rfaB UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase
* ? AP009048 = 383803251 (0.630)17 (0.230) 10/88 NT 26.2% coding (676/1020 nt) rfaI UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase
?AP009048 = 3838051 50 (0.680)coding (695/1020 nt) rfaI UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase
* ? AP009048 = 384798072 (0.880)5 (0.070) 3/86 NT 7.0% coding (117/1197 nt) kbl glycine C‑acetyltransferase
?AP009048 = 3847986 70 (0.980)coding (123/1197 nt) kbl glycine C‑acetyltransferase
* ? AP009048 = 3906584121 (1.490)6 (0.090) 3/82 NT 5.1% coding (112/1182 nt) xylH D‑xylose transporter subunit
?AP009048 = 3906594 123 (1.810)coding (102/1182 nt) xylH D‑xylose transporter subunit
* ? AP009048 3914411 =128 (1.570)7 (0.100) 3/84 NT 6.7% coding (118/996 nt) yiaH conserved inner membrane protein
?AP009048 3914447 = 84 (1.200)coding (82/996 nt) yiaH conserved inner membrane protein
* ? AP009048 = 392286775 (0.920)5 (0.070) 4/84 NT 6.4% coding (239/975 nt) tiaE 2‑keto‑D‑gluconate reductase
?AP009048 = 3922891 81 (1.160)coding (215/975 nt) tiaE 2‑keto‑D‑gluconate reductase
* ? AP009048 = 395660771 (0.870)5 (0.080) 4/80 NT 6.8% coding (1772/1950 nt) yhjK predicted diguanylate cyclase
?AP009048 = 3956617 80 (1.200)coding (1782/1950 nt) yhjK predicted diguanylate cyclase
* ? AP009048 3992197 =95 (1.170)8 (0.110) 4/84 NT 9.6% intergenic (‑310/+567) arsR/gor DNA‑binding transcriptional regulator/glutathione oxidoreductase
?AP009048 3992225 = 69 (0.990)intergenic (‑338/+539) arsR/gor DNA‑binding transcriptional regulator/glutathione oxidoreductase
* ? AP009048 4015734 =NA (NA)3 (0.040) 3/86 NT 32.8% coding (304/1137 nt) yhhI predicted transposase
?AP009048 4015766 = 7 (0.090)coding (272/1137 nt) yhhI predicted transposase
* ? AP009048 = 4037963107 (1.310)10 (0.140) 3/86 NT 11.0% coding (296/669 nt) ftsE predicted transporter subunit
?AP009048 = 4037980 68 (0.950)coding (313/669 nt) ftsE predicted transporter subunit
* ? AP009048 4047710 =122 (1.500)5 (0.070) 3/86 NT 5.0% intergenic (+19/‑380) livF/ugpB leucine/isoleucine/valine transporter subunit/glycerol‑3‑phosphate transporter subunit
?AP009048 4047726 = 81 (1.130)intergenic (+35/‑364) livF/ugpB leucine/isoleucine/valine transporter subunit/glycerol‑3‑phosphate transporter subunit
* ? AP009048 4055520 =70 (0.860)8 (0.110) 5/84 NT 12.4% coding (137/285 nt) yrhB hypothetical protein
?AP009048 4055548 = 53 (0.760)coding (109/285 nt) yrhB hypothetical protein
* ? AP009048 4057520 =108 (1.330)7 (0.100) 5/86 NT 8.1% coding (1033/1179 nt) yhhZ conserved hypothetical protein
?AP009048 4057546 = 65 (0.910)coding (1007/1179 nt) yhhZ conserved hypothetical protein
* ? AP009048 4115489 =111 (1.360)8 (0.100) 3/92 NT 7.0% coding (2057/2553 nt) mrcA fused penicillin‑binding protein 1a murein transglycosylase and murein transpeptidase
?AP009048 4115509 = 107 (1.400)coding (2037/2553 nt) mrcA fused penicillin‑binding protein 1a murein transglycosylase and murein transpeptidase
* ? AP009048 4202598 =136 (1.670)10 (0.140) 4/84 NT 8.8% coding (1301/1377 nt) trkA NAD‑binding component of TrK potassium transporter
?AP009048 4202647 = 90 (1.290)coding (1252/1377 nt) trkA NAD‑binding component of TrK potassium transporter
* ? AP009048 = 428544398 (1.200)10 (0.140) 5/88 NT 9.3% coding (1223/1293 nt) yjcF conserved hypothetical protein
?AP009048 = 4285461 108 (1.480)coding (1205/1293 nt) yjcF conserved hypothetical protein
* ? AP009048 4290004 =73 (0.900)7 (0.090) 3/96 NT 8.9% coding (958/1959 nt) acs bifunctional acetyl‑CoA synthetase and propionyl‑CoA synthetase
?AP009048 4290033 = 72 (0.900)coding (929/1959 nt) acs bifunctional acetyl‑CoA synthetase and propionyl‑CoA synthetase
* ? AP009048 4333023 =89 (1.090)10 (0.140) 3/84 NT 13.6% coding (1211/2229 nt) yjdA conserved hypothetical protein with nucleoside triphosphate hydrolase domain
?AP009048 4333056 = 51 (0.730)coding (1244/2229 nt) yjdA conserved hypothetical protein with nucleoside triphosphate hydrolase domain
* ? AP009048 = 4396234116 (1.420)8 (0.110) 5/90 NT 6.2% intergenic (‑45/‑50) rsgA/orn ribosome small subunit‑dependent GTPase A/oligoribonuclease
?AP009048 = 4396248 136 (1.820)intergenic (‑59/‑36) rsgA/orn ribosome small subunit‑dependent GTPase A/oligoribonuclease
* ? AP009048 = 443513472 (0.880)4 (0.060) 3/82 NT 6.3% coding (591/1413 nt) cycA D‑alanine/D‑serine/glycine transporter
?AP009048 = 4435145 59 (0.870)coding (602/1413 nt) cycA D‑alanine/D‑serine/glycine transporter
* ? AP009048 4460146 =111 (1.360)10 (0.150) 3/80 NT 12.3% coding (144/999 nt) fbp fructose‑1,6‑bisphosphatase I
?AP009048 4460176 = 52 (0.780)coding (114/999 nt) fbp fructose‑1,6‑bisphosphatase I
* ? AP009048 4460583 =143 (1.760)9 (0.120) 5/90 NT 6.8% coding (119/1374 nt) mpl UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
?AP009048 4460602 = 116 (1.550)coding (138/1374 nt) mpl UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
* ? AP009048 4461591 =106 (1.300)7 (0.100) 3/86 NT 8.2% coding (1127/1374 nt) mpl UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
?AP009048 4461615 = 64 (0.900)coding (1151/1374 nt) mpl UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
* ? AP009048 4472982 =51 (0.630)8 (0.110) 3/88 NT 13.1% coding (678/2697 nt) mgtA magnesium transporter
?AP009048 4473008 = 60 (0.820)coding (704/2697 nt) mgtA magnesium transporter
* ? AP009048 4483744 =84 (1.030)4 (0.060) 4/86 NT 5.4% coding (474/504 nt) yjgM predicted acetyltransferase
?AP009048 4483780 = 67 (0.940)coding (438/504 nt) yjgM predicted acetyltransferase
* ? AP009048 = 4523151140 (1.720)9 (0.120) 3/94 NT 5.8% intergenic (‑236/‑56) fecI/insA RNA polymerase, sigma 19 factor/IS1 repressor protein InsA
?AP009048 = 4523171 159 (2.040)intergenic (‑256/‑36) fecI/insA RNA polymerase, sigma 19 factor/IS1 repressor protein InsA
* ? AP009048 = 4546546111 (1.360)6 (0.080) 3/86 NT 5.8% intergenic (+307/‑171) fimB/fimE tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA
?AP009048 = 4546570 99 (1.390)intergenic (+331/‑147) fimB/fimE tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA
* ? AP009048 4547362 =37 (0.450)12 (0.180) 10/80 NT 27.5% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
?AP009048 4547676 = 33 (0.500)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
* ? AP009048 = 454737035 (0.430)14 (0.210) 10/80 NT 31.3% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
?AP009048 = 4547666 33 (0.500)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
* ? AP009048 = 4561540101 (1.240)7 (0.100) 3/86 NT 6.9% intergenic (‑540/‑133) yjiC/yjiD hypothetical protein/DNA replication/recombination/repair protein
?AP009048 = 4561547 101 (1.410)intergenic (‑547/‑126) yjiC/yjiD hypothetical protein/DNA replication/recombination/repair protein
* ? AP009048 = 4578428130 (1.600)7 (0.090) 3/90 NT 5.8% coding (1335/1518 nt) yjiT conserved hypothetical protein
?AP009048 = 4578439 110 (1.470)coding (1346/1518 nt) yjiT conserved hypothetical protein
* ? AP009048 = 459962489 (1.090)12 (0.180) 4/82 NT 12.4% coding (908/915 nt) yjjM predicted DNA‑binding transcriptional regulator
?AP009048 = 4599637 95 (1.390)coding (895/915 nt) yjjM predicted DNA‑binding transcriptional regulator
* ? AP009048 4599760 =122 (1.500)6 (0.080) 3/88 NT 5.7% coding (772/915 nt) yjjM predicted DNA‑binding transcriptional regulator
?AP009048 4599800 = 88 (1.200)coding (732/915 nt) yjjM predicted DNA‑binding transcriptional regulator
* ? AP009048 4609762 =90 (1.110)12 (0.160) 4/88 NT 13.4% coding (582/789 nt) fhuF ferric iron reductase involved in ferric hydroximate transport
?AP009048 4609788 = 74 (1.010)coding (556/789 nt) fhuF ferric iron reductase involved in ferric hydroximate transport
* ? AP009048 = 4627296110 (1.350)5 (0.070) 3/92 NT 5.0% coding (848/1332 nt) yjjJ predicted DNA‑binding transcriptional regulator
?AP009048 = 4627312 85 (1.110)coding (864/1332 nt) yjjJ predicted DNA‑binding transcriptional regulator
* ? AP009048 = 463296390 (1.110)6 (0.080) 3/88 NT 7.1% coding (969/1233 nt) nadR bifunctional DNA‑binding transcriptional repressor and NMN adenylyltransferase
?AP009048 = 4632978 77 (1.050)coding (984/1233 nt) nadR bifunctional DNA‑binding transcriptional repressor and NMN adenylyltransferase