mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 37,137 | A→C | C230G (TGT→GGT) | caiC ← | carnitine‑CoA ligase |
| RA | 42,759 | Δ1 bp | coding (357/771 nt) | fixA → | putative electron transfer flavoprotein FixA |
| RA | 54,435 | T→C | K90E (AAA→GAA) | surA ← | peptidyl‑prolyl cis‑trans isomerase SurA |
| RA | 61,164 | C→T | A701T (GCA→ACA) | rapA ← | RNA polymerase‑binding ATPase and RNAP recycling factor |
| RA | 79,341 | C→A | G38V (GGT→GTT) | leuD ← | 3‑isopropylmalate dehydratase subunit LeuD |
| RA | 91,323 | G→A | E98K (GAA→AAA) | ftsL → | cell division protein FtsL |
| RA | 102,607 | C→T | G125G (GGC→GGT) | ddlB → | D‑alanine‑‑D‑alanine ligase B |
| RA | 104,426 | C→T | L149F (CTT→TTT) | ftsA → | cell division protein FtsA |
| RA | 106,741 | T→G | L62R (CTC→CGC) | lpxC → | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase |
| RA | 143,125 | G→A | R116H (CGC→CAC) | yadG → | putative ABC transporter ATP‑binding protein YadG |
| RA | 153,179 | C→T | V750I (GTT→ATT) | htrE ← | putative fimbrial usher protein HtrE |
| RA | 156,198 | (A)6→5 | coding (4/741 nt) | yadV ← | putative fimbrial chaperone YadV |
| RA | 160,809 | A→T | L226L (CTT→CTA) | sfsA ← | putative DNA‑binding transcriptional regulator of maltose metabolism |
| RA | 164,352 | C→T | L750L (CTG→TTG) | hrpB → | putative ATP‑dependent RNA helicase HrpB |
| RA | 167,651 | (G)5→4 | coding (168/2244 nt) | fhuA → | ferrichrome outer membrane transporter/phage receptor |
| RA | 189,243 | C→T | L88L (CTG→CTA) | map ← | methionine aminopeptidase |
| RA | 191,485 | A→G | E210G (GAA→GGA) | tsf → | protein chain elongation factor EF‑Ts |
| RA | 196,002 | C→T | S109F (TCC→TTC) | cdsA → | CDP‑diglyceride synthetase |
| RA | 199,378 | G→A | S484N (AGC→AAC) | bamA → | outer membrane protein assembly factor BamA |
| RA | 205,791 | C→T | G222G (GGC→GGT) | dnaE → | DNA polymerase III subunit alpha |
| RA | 208,192 | T→A | S1023T (TCC→ACC) | dnaE → | DNA polymerase III subunit alpha |
| RA | 239,682 | A→C | S170A (TCT→GCT) | yafV ← | 2‑oxoglutaramate amidase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 268,409 | C→T | E184E (GAG→GAA) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein YkfA |
| RA | 287,376 | G→A | W196* (TGG→TGA) | yagH → | CP4‑6 prophage; putative xylosidase/arabinosidase |
| RA | 291,906 | C→T | S136L (TCA→TTA) | yagJ → | CP4‑6 prophage; protein YagJ |
| RA | 294,812 | C→T | intergenic (‑13/+106) | yagM ← / ← ykgV | CP4‑6 prophage; protein YagM/protein YkgV |
| RA | 304,754 | C→T | R151Q (CGA→CAA) | ecpE ← | putative fimbrial chaperone EcpE |
| RA | 307,452 | T→C | G627G (GGA→GGG) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 308,986 | Δ1 bp | coding (347/2526 nt) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 311,801 | G→A | intergenic (‑465/‑311) | ecpR ← / → ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL |
| RA | 314,110 | T→C | intergenic (‑305/‑247) | ykgP ← / → eaeH | putative oxidoreductase/putative porin domain‑containing protein EaeH |
| RA | 314,734 | Δ1 bp | pseudogene (378/888 nt) | eaeH → | putative porin domain‑containing protein EaeH |
| RA | 318,550 | A→G | V6V (GTT→GTC) | rclB ← | DUF1471 domain‑containing protein RclB |
| RA | 321,002 | C→T | S259F (TCT→TTT) | rclR → | DNA‑binding transcriptional activator RclR |
| RA | 329,433 | A→T | intergenic (‑99/‑30) | betI ← / → betT | DNA‑binding transcriptional repressor BetI/choline:H(+) symporter |
| RA | 331,597 | G→A | intergenic (+101/‑205) | betT → / → yahV | choline:H(+) symporter/protein YahV |
| RA | 333,708 | (A)6→7 | coding (726/933 nt) | yahB ← | putative LysR‑type DNA‑binding transcriptional regulator YahB |
| RA | 334,105 | T→G | H110P (CAC→CCC) | yahB ← | putative LysR‑type DNA‑binding transcriptional regulator YahB |
| RA | 341,434 | C→G | P104A (CCG→GCG) | yahJ → | putative deaminase with metallo‑dependent hydrolase domain |
| RA | 356,197 | T→C | I9I (ATT→ATC) | codA → | cytosine/isoguanine deaminase |
| RA | 358,748 | A→G | intergenic (‑58/‑51) | cynR ← / → cynT | DNA‑binding transcriptional dual regulator CynR/carbonic anhydrase 1 |
| RA | 394,441 | C→T | intergenic (+23/‑65) | yaiT → / → iprA | putative autotransporter YaiT/putative DNA‑binding transcriptional regulator IprA |
| RA | 397,561 | (A)5→6 | coding (923/1221 nt) | sbmA → | peptide antibiotic/peptide nucleic acid transporter |
| RA | 399,509 | T→C | intergenic (‑176/‑84) | yaiY ← / → yaiZ | inner membrane protein/DUF2754 domain‑containing protein YaiZ |
| RA | 401,507 | C→T | A41V (GCG→GTG) | iraP → | anti‑adaptor protein for sigma(S) stabilization |
| RA | 427,572 | G→A | D96N (GAC→AAC) | yajC → | Sec translocon accessory complex subunit YajC |
| RA | 430,613 | C→T | I3I (ATC→ATT) | yajD → | HNH nuclease family protein |
| RA | 443,213 | G→A | R143R (CGC→CGT) | yajL ← | protein/nucleic acid deglycase 3 |
| RA | 451,589 | Δ1 bp | coding (22/948 nt) | cyoA ← | cytochrome bo3 ubiquinol oxidase subunit 2 |
| RA | 459,044 | G→A | V53I (GTC→ATC) | lon → | Lon protease |
| RA | 469,571 | (A)8→9 | coding (701/1773 nt) | mdlA → | ABC transporter family protein MdlA |
| RA | 470,149 | G→C | A427P (GCG→CCG) | mdlA → | ABC transporter family protein MdlA |
| RA | 480,037 | (A)5→4 | intergenic (‑119/+53) | maa ← / ← hha | maltose O‑acetyltransferase/hemolysin expression modulating protein |
| RA | 508,288 | A→G | D24G (GAT→GGT) | ybaQ → | putative DNA‑binding transcriptional regulator YbaQ |
| RA | 513,613 | C→T | G346G (GGC→GGT) | ybaT → | putative transporter YbaT |
| RA | 528,621 | (A)7→8 | pseudogene (673/711 nt) | ylbH → | putative RHS domain‑containing protein YlbH |
| RA | 529,234 | Δ1 bp | intergenic (+104/‑263) | ybbD → / → ylbI | putative uncharacterized protein YbbD/RHS element protein YlbI |
| RA | 538,029 | A→G | I133V (ATT→GTT) | ybbW → | putative allantoin transporter |
| RA | 549,554 | Δ1 bp | coding (1198/1260 nt) | ylbE → | DUF1116 domain‑containing protein YlbE |
| RA | 554,631 | T→A | T7T (ACT→ACA) | cysS → | cysteine‑‑tRNA ligase |
| RA | 560,293 | (T)7→6 | coding (597/2604 nt) | sfmD → | putative fimbrial usher protein SfmD |
| RA | 561,972 | (A)7→8 | coding (2276/2604 nt) | sfmD → | putative fimbrial usher protein SfmD |
| RA | 578,489 | T→C | F128S (TTC→TCC) S55P (TCA→CCA) |
rzpD → rzoD → |
DLP12 prophage; putative prophage endopeptidase RzpD DLP12 prophage; putative prophage lysis lipoprotein RzoD |
| RA | 583,611 | T→C | intergenic (+551/‑70) | tfaX → / → appY | DLP12 prophage; protein TfaX/DNA‑binding transcriptional activator AppY |
| RA | 584,262 | (A)7→6 | coding (582/750 nt) | appY → | DNA‑binding transcriptional activator AppY |
| RA | 595,846 | A→G | K83E (AAA→GAA) | cusC → | copper/silver export system outer membrane channel |
| RA | 598,242 | C→T | A255V (GCC→GTC) | cusB → | copper/silver export system membrane fusion protein |
| RA | 612,097 | G→A | T133I (ACT→ATT) | fepA ← | ferric enterobactin outer membrane transporter |
| RA | 612,670 | A→G | intergenic (‑176/‑67) | fepA ← / → fes | ferric enterobactin outer membrane transporter/enterochelin esterase |
| RA | 612,807 | A→G | N24S (AAT→AGT) | fes → | enterochelin esterase |
| RA | 619,996 | G→A | G68G (GGC→GGT) | fepC ← | ferric enterobactin ABC transporter ATP binding subunit |
| RA | 638,568 | (T)6→7 | coding (6/747 nt) | dsbG ← | protein sulfenic acid reductase DsbG |
| RA | 649,456 | T→C | E39G (GAA→GGA) | citF ← | citrate lyase alpha subunit |
| RA | 652,357 | Δ1 bp | coding (123/1659 nt) | dpiB → | sensory histidine kinase DpiB |
| RA | 662,009 | G→T | N90K (AAC→AAA) | lipB ← | lipoyl(octanoyl) transferase |
| RA | 680,675 | C→A | A155D (GCT→GAT) | djlC → | co‑chaperone DjlC |
| RA | 681,557 | (A)7→6 | coding (1346/1452 nt) | djlC → | co‑chaperone DjlC |
| RA | 696,211 | T→G | L371V (TTA→GTA) | ubiF → | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase |
| RA | 698,541 | G→T | R213S (CGT→AGT) | asnB ← | asparagine synthetase B |
| RA | 724,054 | G→A | H121Y (CAT→TAT) | kdpD ← | sensory histidine kinase KdpD |
| RA | 737,651 | A→G | pseudogene (752/1062 nt) | ybfL → | putative transposase YbfL |
| RA | 738,053 | A→C | intergenic (+92/‑39) | ybfL → / → ybfD | putative transposase YbfL/H repeat‑associated putative transposase YbfD |
| RA | 744,025 | C→T | Q145* (CAA→TAA) | pxpB → | 5‑oxoprolinase component B |
| RA | 749,521 | C→T | E63K (GAG→AAG) | ybgP ← | putative fimbrial chaperone YbgP |
| RA | 752,848 | T→C | intergenic (‑53/+337) | ybgD ← / ← gltA | putative fimbrial protein YbgD/citrate synthase |
| RA | 771,585 | C→T | S43F (TCC→TTC) | cydA → | cytochrome bd‑I ubiquinol oxidase subunit I |
| RA | 792,039 | G→A | T6I (ACC→ATC) | galE ← | UDP‑glucose 4‑epimerase |
| RA | 797,736 | T→C | E232E (GAA→GAG) | ybhA ← | pyridoxal phosphate/fructose‑1,6‑bisphosphate phosphatase |
| RA | 836,709 | A→C | H120P (CAT→CCT) | hcxB → | hydroxycarboxylate dehydrogenase B |
| RA | 844,647 | G→A | G278G (GGC→GGT) | ybiO ← | moderate conductance mechanosensitive channel |
| RA | 856,129 | Δ1 bp | coding (167/1593 nt) | ybiT → | ABC transporter ATP‑binding protein YbiT |
| RA | 866,441 | Δ1 bp | intergenic (‑77/‑127) | moeA ← / → iaaA | molybdopterin molybdotransferase/isoaspartyl dipeptidase proenzyme |
| RA | 881,801 | A→G | N359D (AAC→GAC) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase DacC |
| RA | 897,586 | G→A | R168H (CGC→CAC) | potI → | putrescine ABC transporter membrane subunit PotI |
| RA | 913,852 | Δ1 bp | intergenic (‑38/+106) | hcp ← / ← lysO | protein S‑nitrosylase/L‑lysine exporter |
| RA | 914,159 | T→C | E233E (GAA→GAG) | lysO ← | L‑lysine exporter |
| RA | 916,112 | (A)6→7 | intergenic (‑65/‑361) | aqpZ ← / → ybjD | water channel AqpZ/DUF2813 domain‑containing protein YbjD |
| RA | 916,505 | Δ1 bp | coding (33/1659 nt) | ybjD → | DUF2813 domain‑containing protein YbjD |
| RA | 919,229 | A→G | intergenic (‑109/‑6) | ybjX ← / → macA | DUF535 domain‑containing protein YbjX/ABC‑type tripartite efflux pump membrane fusion protein |
| RA | 922,079 | T→G | L578R (CTG→CGG) | macB → | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| RA | 925,507 | T→A | S748R (AGT→AGA) | clpA → | ATP‑dependent Clp protease ATP‑binding subunit ClpA |
| RA | 932,104 | A→C | intergenic (‑54/‑491) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 974,815 | A→G | E166G (GAA→GGA) | mukF → | chromosome partitioning protein MukF |
| RA | 979,598 | C→T | N1091N (AAC→AAT) | mukB → | chromosome partitioning protein MukB |
| RA | 982,175 | A→G | I377V (ATC→GTC) | ldtD → | L,D‑transpeptidase LdtD |
| RA | 987,285 | T→C | intergenic (‑303/+300) | ompF ← / ← asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| RA | 989,482 | (T)5→4 | coding (875/1203 nt) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 991,998 | G→T | E459D (GAG→GAT) | pepN → | aminopeptidase N |
| RA | 1,037,262 | C→T | H172Y (CAT→TAT) | hyaF → | protein HyaF |
| RA | 1,047,912 | C→A | A12S (GCC→TCC) | gfcD ← | putative lipoprotein GfcD |
| RA | 1,048,809 | (T)5→4 | coding (524/645 nt) | gfcB ← | lipoprotein GfcB |
| RA | 1,064,853 | A→T | D273V (GAT→GTT) | yccE → | uncharacterized protein YccE |
| RA | 1,065,842 | G→T | M86I (ATG→ATT) | agp → | glucose‑1‑phosphatase |
| RA | 1,069,550 | G→A | A97V (GCG→GTG) | rutG ← | pyrimidine:H(+) symporter |
| RA | 1,080,669 | T→C | I455I (ATT→ATC) | putP → | proline:Na(+) symporter |
| RA | 1,096,234 | C→G | P131R (CCG→CGG) | ycdU → | uncharacterized protein YcdU |
| RA | 1,101,981 | G→A | N49N (AAC→AAT) | csgF ← | curli assembly component |
| RA | 1,104,203 | A→G | T85A (ACA→GCA) | csgB → | curlin, minor subunit |
| RA | 1,107,729 | Δ1 bp | coding (1375/1422 nt) | clsC → | cardiolipin synthase C |
| RA | 1,121,231 | (A)8→7 | intergenic (‑276/+11) | bssS ← / ← dinI | regulator of biofilm formation/DNA damage‑inducible protein I |
| RA | 1,125,546 | A→G | intergenic (‑220/‑16) | mdtH ← / → rimJ | multidrug efflux pump MdtH/ribosomal‑protein‑S5‑alanine N‑acetyltransferase |
| RA | 1,125,850 | G→A | V97I (GTT→ATT) | rimJ → | ribosomal‑protein‑S5‑alanine N‑acetyltransferase |
| RA | 1,134,618 | (G)5→6 | intergenic (+61/‑111) | flgF → / → flgG | flagellar basal‑body rod protein FlgF/flagellar basal‑body rod protein FlgG |
| RA | 1,147,182 | C→T | A130V (GCC→GTC) | yceD → | DUF177 domain‑containing protein YceD |
| RA | 1,161,670 | A→G | intergenic (‑119/‑215) | fhuE ← / → hinT | ferric coprogen/ferric rhodotorulic acid outer membrane transporter/purine nucleoside phosphoramidase |
| RA | 1,177,323 | G→A | A2T (GCG→ACG) | lolE → | lipoprotein release complex ‑ inner membrane subunit |
| RA | 1,180,739 | (G)6→7 | coding (529/789 nt) | ycfZ ← | putative inner membrane protein |
| RA | 1,184,877 | (T)5→4 | coding (718/1137 nt) | potA ← | spermidine preferential ABC transporter ATP binding subunit |
| RA | 1,197,362 | T→C | L57L (TTA→TTG) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,199,190 | G→A | V166I (GTT→ATT) | lit → | e14 prophage; cell death peptidase Lit |
| RA | 1,203,694 | Δ1 bp | coding (427/558 nt) | ymfL → | e14 prophage; uncharacterized protein YmfL |
| RA | 1,204,591 | A→G | N141S (AAC→AGC) pseudogene (191/1137 nt) |
ymfN → aaaE → |
e14 prophage; chimeric replication protein/phage terminase YmfN phage terminase |
| RA | 1,210,465 | C→T | Y40Y (TAC→TAT) | mcrA → | e14 prophage; 5‑methylcytosine‑specific restriction enzyme McrA |
| RA | 1,212,088 | (C)8→7 | intergenic (‑85/+172) | iraM ← / ← ymgK | anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis/protein YmgK |
| RA | 1,220,329 | (A)6→5 | pseudogene (729/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,220,468 | T→C | pseudogene (868/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,222,638 | C→T | intergenic (‑4/+6) | ymgD ← / ← ymgG | PF16456 family protein YmgD/PF13488 family protein YmgG |
| RA | 1,224,226 | (A)5→4 | intergenic (+319/+53) | ycgI → / ← minE | protein YcgI/Z‑ring positioning protein MinE |
| RA | 1,236,848 | (T)5→6 | coding (394/1533 nt) | ycgB ← | PF04293 family protein YcgB |
| RA | 1,245,080 | A→G | intergenic (+98/‑80) | ymgE → / → ycgY | PF04226 family protein YmgE/uncharacterized protein YcgY |
| RA | 1,256,202 | T→C | intergenic (‑250/+519) | ycgV ← / ← ychF | putative autotransporter adhesin YcgV/redox‑responsive ATPase YchF |
| RA | 1,265,511 | G→A | S167N (AGC→AAC) | prfA → | peptide chain release factor RF1 |
| RA | 1,277,223 | G→C | A132A (GCC→GCG) | narX ← | sensory histidine kinase NarX |
| RA | 1,284,681 | T→C | S360P (TCT→CCT) | narH → | nitrate reductase A subunit beta |
| RA | 1,287,062 | G→A | intergenic (+78/+4) | ychS → / ← rttR | putative uncharacterized protein YchS/small RNA RttR |
| RA | 1,290,932 | C→T | L231F (CTT→TTT) | rssB → | regulator of RpoS |
| RA | 1,292,886 | T→C | T13A (ACT→GCT) | hns ← | DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,293,260 | G→T | intergenic (‑338/‑267) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| RA | 1,298,931 | A→G | T112A (ACC→GCC) | ychE → | putative inner membrane protein |
| RA | 1,299,534 | T→C | F2L (TTT→CTT) | insH21 → | IS5 transposase and trans‑activator |
| RA | 1,309,276 | C→A | A332S (GCA→TCA) | kch ← | K(+) channel Kch |
| RA | 1,333,565 | G→A | V840I (GTC→ATC) | topA → | DNA topoisomerase 1 |
| RA | 1,335,541 | C→T | intergenic (+83/‑31) | yciX → / → ymiC | uncharacterized protein YciX/protein YmiC |
| RA | 1,344,488 | C→G | R41P (CGC→CCC) | yciZ ← | UPF0509 protein YciZ |
| RA | 1,347,438 | T→G | Y492S (TAC→TCC) | rnb ← | RNase II |
| RA | 1,349,016 | T→C | I364M (ATA→ATG) | yciW ← | putative oxidoreductase |
| RA | 1,361,974 | T→G | S22A (TCA→GCA) | puuR → | DNA‑binding transcriptional repressor PuuR |
| RA | 1,370,687 | G→A | V158I (GTT→ATT) | ycjM → | glucosylglycerate phosphorylase |
| RA | 1,371,717 | T→C | V501A (GTA→GCA) | ycjM → | glucosylglycerate phosphorylase |
| RA | 1,375,307 | C→T | V115V (GTC→GTT) | ycjQ → | putative zinc‑binding dehydrogenase YcjQ |
| RA | 1,392,761 | (A)8→9 | coding (771/900 nt) | pgrR → | DNA‑binding transcriptional repressor PgrR |
| RA | 1,394,406 | (A)6→7 | coding (1180/1614 nt) | mppA → | murein tripeptide ABC transporter periplasmic binding protein |
| RA | 1,399,667 | T→C | intergenic (‑141/+54) | fnr ← / ← ogt | DNA‑binding transcriptional dual regulator FNR/methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| RA | 1,404,016 | C→T | E184K (GAA→AAA) | abgA ← | p‑aminobenzoyl‑glutamate hydrolase subunit A |
| RA | 1,413,020 | (T)5→4 | coding (216/1236 nt) | intR ← | Rac prophage; putative integrase |
| RA | 1,413,945 | (A)6→5 | intergenic (‑18/+39) | ralR ← / ← recT | Rac prophage; endodeoxyribonuclease toxin RalR/Rac prophage; recombinase, DNA renaturation |
| RA | 1,415,957 | T→C | K477R (AAA→AGA) | recE ← | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific |
| RA | 1,417,546 | (T)8→9 | coding (218/276 nt) | racC ← | Rac prophage; protein RacC |
| RA | 1,424,191 | T→A | L137* (TTA→TAA) | trkG → | Rac prophage; K(+) transporter TrkG |
| RA | 1,428,030 | C→G | A233P (GCC→CCC) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,429,596 | C→G | A183G (GCA→GGA) | stfR → | Rac prophage; putative membrane protein |
| RA | 1,434,706 | Δ1 bp | intergenic (‑300/+252) | ynaM ← / ← ttcC | Rac prophage; protein YnaM/putative tRNA 2‑thiocytidine (s(2)C32) synthase |
| RA | 1,435,732 | (A)5→4 | intergenic (‑113/+28) | uspF ← / ← ompN | nucleotide binding filament protein/outer membrane porin N |
| RA | 1,437,191 | A→G | noncoding (71/109 nt) | micC → | small regulatory RNA MicC |
| RA | 1,437,204 | C→A | noncoding (84/109 nt) | micC → | small regulatory RNA MicC |
| RA | 1,446,150 | Δ1 bp | coding (271/327 nt) | ydbL → | DUF1318 domain‑containing protein YdbL |
| RA | 1,486,323 | A→G | K1088R (AAG→AGG) | hrpA → | ATP‑dependent RNA helicase HrpA |
| RA | 1,487,583 | (A)6→5 | coding (349/801 nt) | ydcF → | DUF218 domain‑containing protein YdcF |
| RA | 1,488,501 | T→C | I90I (ATT→ATC) | aldA → | aldehyde dehydrogenase A |
| RA | 1,489,696 | (T)6→5 | intergenic (+25/+17) | aldA → / ← gapC | aldehyde dehydrogenase A/glyceraldehyde‑3‑phosphate dehydrogenase |
| RA | 1,490,954 | (T)5→4 | coding (53/531 nt) | cybB → | cytochrome b561 |
| RA | 1,497,760 | A→C | D302A (GAT→GCT) | opgD → | glucan biosynthesis protein D |
| RA | 1,502,319 | C→T | intergenic (+164/‑138) | tehB → / → ydcL | tellurite methyltransferase/DUF3313 domain‑containing lipoprotein YdcL |
| RA | 1,512,246 | T→G | V198G (GTT→GGT) | ydcS → | putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase |
| RA | 1,516,272 | T→C | I232T (ATC→ACC) | patD → | gamma‑aminobutyraldehyde dehydrogenase |
| RA | 1,520,784 | C→T | P175S (CCA→TCA) | mcbR → | DNA‑binding transcriptional dual regulator McbR |
| RA | 1,520,982 | A→G | I695T (ATT→ACT) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,529,865 | T→C | pseudogene (1976/2049 nt) | rhsE → | RhsE protein in rhs element |
| RA | 1,534,244 | G→A | G74D (GGC→GAC) | nhoA → | arylamine N‑acetyltransferase |
| RA | 1,567,328 | G→A | intergenic (‑109/+176) | yddY ← / ← yddW | protein YddY/putative lipoprotein YddW |
| RA | 1,575,336 | T→G | S762R (AGC→CGC) | yddB ← | putative TonB‑dependent receptor |
| RA | 1,577,751 | (T)5→4 | coding (1592/1686 nt) | yddA ← | ABC transporter family protein YddA |
| RA | 1,578,871 | A→G | F158L (TTC→CTC) | yddA ← | ABC transporter family protein YddA |
| RA | 1,583,513 | (T)6→5 | coding (175/762 nt) | ydeO ← | DNA‑binding transcriptional dual regulator YdeO |
| RA | 1,588,708 | C→T | S44S (TCG→TCA) | ydeS ← | putative fimbrial protein YdeS |
| RA | 1,592,490 | T→C | intergenic (‑48/+175) | hipB ← / ← yneO | antitoxin/DNA‑binding transcriptional repressor HipB/AIDA‑I family autotransporter YneO |
| RA | 1,607,828 | C→T | G161G (GGC→GGT) | tam → | trans‑aconitate 2‑methyltransferase |
| RA | 1,610,589 | A→G | V31A (GTT→GCT) | uxaB ← | tagaturonate reductase |
| RA | 1,624,357 | (T)8→7 | coding (141/393 nt) | ydeI ← | BOF family protein YdeI |
| RA | 1,638,720 | (A)8→7 | intergenic (‑53/+310) | cspI ← / ← rzpQ | Qin prophage; cold shock protein CspI/Qin prophage; DUF2514 domain‑containing protein RzpQ |
| RA | 1,643,727 | (T)6→5 | coding (578/1050 nt) | ydfU ← | Qin prophage; protein YdfU |
| RA | 1,649,811 | G→A | V6V (GTG→GTA) | ydfD → | Qin prophage; lysis protein |
| RA | 1,652,682 | C→T | pseudogene (1171/1197 nt) | intQ → | Qin prophage; putative defective integrase |
| RA | 1,658,706 | G→C | G213A (GGC→GCC) | ynfE → | putative selenate reductase YnfE |
| RA | 1,659,890 | (A)7→6 | coding (1822/2427 nt) | ynfE → | putative selenate reductase YnfE |
| RA | 1,665,852 | T→C | L180L (TTG→CTG) | clcB → | putative chloride:H(+) antiporter ClcB |
| RA | 1,668,684 | (T)5→4 | intergenic (‑120/+15) | mlc ← / ← ynfL | DNA‑binding transcriptional repressor Mlc/putative DNA‑binding transcriptional regulator |
| RA | 1,678,711 | (A)5→4 | coding (285/945 nt) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,680,663 | C→T | P369P (CCC→CCT) | ydgI → | putative arginine:ornithine antiporter |
| RA | 1,697,672 | G→A | F123F (TTC→TTT) | hdhA ← | 7‑alpha‑hydroxysteroid dehydrogenase |
| RA | 1,705,851 | A→G | M29V (ATG→GTG) | rsxA → | SoxR [2Fe‑2S] reducing system protein RsxA |
| RA | 1,706,464 | A→T | K39N (AAA→AAT) | rsxB → | SoxR [2Fe‑2S] reducing system protein RsxB |
| RA | 1,712,518 | (C)6→5 | intergenic (+360/‑251) | nth → / → dtpA | endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA |
| RA | 1,729,349 | T→C | I88T (ATC→ACC) | lhr → | putative ATP‑dependent helicase Lhr |
| RA | 1,733,506 | (A)7→8 | coding (4420/4617 nt) | lhr → | putative ATP‑dependent helicase Lhr |
| RA | 1,736,392 | Δ1 bp | coding (899/1170 nt) | ydhP ← | putative transporter YdhP |
| RA | 1,742,230 | C→A | T273N (ACC→AAC) | cfa → | cyclopropane fatty acyl phospholipid synthase |
| RA | 1,750,974 | T→A | T14S (ACA→TCA) | ydhX ← | putative 4Fe‑4S ferredoxin‑type protein |
| RA | 1,754,826 | C→T | intergenic (‑349/+106) | ydhY ← / ← fumD | putative 4Fe‑4S ferredoxin‑type protein/fumarase D |
| RA | 1,774,321 | T→C | V178A (GTC→GCC) | ydiB → | shikimate dehydrogenase/quinate dehydrogenase |
| RA | 1,780,371 | C→T | A252V (GCC→GTC) | ydiQ → | putative electron transfer flavoprotein subunit YdiQ |
| RA | 1,796,866 | T→C | Y360C (TAT→TGT) | pheT ← | phenylalanine‑‑tRNA ligase subunit beta |
| RA | 1,799,179 | Δ1 bp | intergenic (‑237/+47) | pheS ← / ← pheM | phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide |
| RA | 1,803,390 | (A)6→5 | pseudogene (297/1900 nt) | arpB → | putative ankyrin repeat protein B, N‑terminal fragment |
| RA | 1,812,657 | (T)7→6 | coding (476/804 nt) | ydjO ← | protein YdjO |
| RA | 1,812,746 | (T)6→5 | coding (387/804 nt) | ydjO ← | protein YdjO |
| RA | 1,820,744 | C→T | L157L (CTG→CTA) | chbC ← | N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component |
| RA | 1,830,082 | T→A | V228V (GTA→GTT) | astA ← | arginine N‑succinyltransferase |
| RA | 1,830,943 | T→C | Y347C (TAC→TGC) | astC ← | succinylornithine transaminase |
| RA | 1,832,618 | G→C | G64A (GGC→GCC) | xthA → | exodeoxyribonuclease III |
| RA | 1,861,440 | A→G | intergenic (‑108/+262) | ydjL ← / ← yeaC | putative zinc‑binding dehydrogenase YdjL/conserved protein YeaC |
| RA | 1,870,791 | T→C | V136A (GTT→GCT) | cdgI → | putative c‑di‑GMP binding protein CdgI |
| RA | 1,870,837 | G→A | L151L (CTG→CTA) | cdgI → | putative c‑di‑GMP binding protein CdgI |
| RA | 1,891,836 | C→A | C467F (TGT→TTT) | yoaA ← | putative 5' to 3' DNA helicase implicated in DNA repair |
| RA | 1,894,328 | (A)6→7 | coding (196/300 nt) | yoaC → | DUF1889 domain‑containing protein YoaC |
| RA | 1,903,790 | C→T | L237F (CTC→TTC) | manY → | mannose‑specific PTS enzyme IIC component |
| RA | 1,907,713 | (T)7→8 | intergenic (‑122/+548) | yobF ← / ← yebO | DUF2527 domain‑containing protein YobF/uncharacterized protein YebO |
| RA | 1,915,177 | (T)6→5 | coding (358/699 nt) | proQ ← | RNA chaperone ProQ |
| RA | 1,917,063 | C→A | A269E (GCG→GAG) | yebS → | intermembrane transport protein YebS |
| RA | 1,928,777 | A→G | D21D (GAT→GAC) | ptrB ← | oligopeptidase B |
| RA | 1,940,886 | C→T | L250L (CTG→CTA) | mepM ← | peptidoglycan DD‑endopeptidase MepM |
| RA | 1,956,318 | C→A | E230D (GAG→GAT) | torZ ← | trimethylamine N‑oxide reductase 2 |
| RA | 1,958,219 | C→A | intergenic (‑87/+222) | torY ← / ← micL | cytochrome c quinol dehydrogenase TorY/small regulatory RNA MicL‑S |
| RA | 1,966,912 | G→T | A42A (GCC→GCA) | cheZ ← | chemotaxis protein CheZ |
| RA | 1,974,201 | Δ1 bp | coding (1124/1965 nt) | cheA ← | chemotaxis protein CheA |
| RA | 1,974,402 | C→T | G308E (GGG→GAG) | cheA ← | chemotaxis protein CheA |
| RA | 1,981,145 | A→C | I156M (ATT→ATG) | otsA ← | trehalose‑6‑phosphate synthase |
| RA | 1,983,935 | C→A | A379S (GCC→TCC) | araG ← | arabinose ABC transporter ATP binding subunit |
| RA | 1,995,681 | T→C | Y9Y (TAT→TAC) | yecU → | protein YecU |
| RA | 1,995,748 | C→G | L32V (CTT→GTT) | yecU → | protein YecU |
| RA | 2,012,563 | (G)6→5 | pseudogene (62/279 nt) | intG → | putative defective phage integrase |
| RA | 2,015,409 | A→G | E177G (GAA→GGA) | fliG → | flagellar motor switch protein FliG |
| RA | 2,020,705 | G→A | E207K (GAG→AAG) | fliM → | flagellar motor switch protein FliM |
| RA | 2,044,771 | Δ1 bp | intergenic (+147/‑167) | asnT → / → yeeJ | tRNA‑Asn/inverse autotransporter adhesin |
| RA | 2,052,817 | G→A | pseudogene (512/1053 nt) | yeeL ← | putative glycosyltransferase, N‑terminal fragment |
| RA | 2,055,185 | Δ1 bp | coding (125/1455 nt) | amn → | AMP nucleosidase |
| RA | 2,063,561 | G→T | H303N (CAT→AAT) | cobT ← | nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| RA | 2,072,022 | (G)5→4 | coding (484/3120 nt) | flu → | CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter |
| RA | 2,078,118 | Δ1 bp | coding (179/195 nt) | yeeW → | CP4‑44 prophage; putative uncharacterized protein YeeW |
| RA | 2,083,052 | T→C | I99I (ATT→ATC) | sbcB → | exodeoxyribonuclease I |
| RA | 2,107,972 | (T)8→10 | coding (358/1104 nt) | glf ← | UDP‑galactopyranose mutase |
| RA | 2,108,927 | C→T | V220I (GTT→ATT) | rfbX ← | polyisoprenol‑linked O‑antigen repeat unit flippase |
| RA | 2,109,113 | T→C | I158V (ATT→GTT) | rfbX ← | polyisoprenol‑linked O‑antigen repeat unit flippase |
| RA | 2,113,482 | T→C | K282K (AAA→AAG) | galF ← | UTP:glucose‑1‑phosphate uridylyltransferase, low activity |
| RA | 2,136,915 | T→C | Y110C (TAC→TGC) | wza ← | outer membrane polysaccharide export protein Wza |
| RA | 2,150,632 | Δ1 bp | coding (354/1947 nt) | yegI ← | protein kinase YegI |
| RA | 2,151,002 | T→C | intergenic (‑17/‑183) | yegI ← / → yegJ | protein kinase YegI/DUF2314 domain‑containing protein YegJ |
| RA | 2,168,592 | C→A | intergenic (‑286/‑120) | yegR ← / → yegS | uncharacterized protein YegR/lipid kinase |
| RA | 2,188,459 | C→T | D818N (GAT→AAT) | yehB ← | putative fimbrial usher protein YehB |
| RA | 2,188,685 | Δ1 bp | coding (2226/2481 nt) | yehB ← | putative fimbrial usher protein YehB |
| RA | 2,197,358 | (A)5→4 | intergenic (+60/‑2921) | yehF → / → yehI | putative protein YehF/DUF4132 domain‑containing protein YehI |
| RA | 2,197,477 | T→C | intergenic (+179/‑2802) | yehF → / → yehI | putative protein YehF/DUF4132 domain‑containing protein YehI |
| RA | 2,198,232 | G→A | intergenic (+934/‑2047) | yehF → / → yehI | putative protein YehF/DUF4132 domain‑containing protein YehI |
| RA | 2,204,484 | (T)7→8 | intergenic (+195/‑112) | yehK → / → yehL | uncharacterized protein YehK/putative AAA(+) MoxR family ATPase YehL |
| RA | 2,221,701 | T→C | M97V (ATG→GTG) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,245,248 | T→G | T508P (ACG→CCG) | cirA ← | ferric dihyroxybenzoylserine outer membrane transporter |
| RA | 2,259,134 | T→A | N55Y (AAC→TAC) | psuK ← | putative pseudouridine kinase |
| RA | 2,260,779 | T→C | K211R (AAA→AGA) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| RA | 2,275,814 | A→G | E181G (GAA→GGA) | yejE → | putative oligopeptide ABC transporter membrane subunit YejE |
| RA | 2,277,638 | A→T | I447F (ATC→TTC) | yejF → | putative oligopeptide ABC transporter ATP binding subunit |
| RA | 2,336,486 | G→T | I53I (ATC→ATA) | yfaA ← | DUF2138 domain‑containing protein YfaA |
| RA | 2,340,017 | C→T | P151S (CCA→TCA) | ubiG → | bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase |
| RA | 2,355,314 | (T)7→8 | coding (1050/1260 nt) | glpB → | anaerobic glycerol‑3‑phosphate dehydrogenase subunit B |
| RA | 2,362,611 | C→T | T341T (ACG→ACA) | yfaY ← | IPR008135 CinA family protein YfaY |
| RA | 2,372,873 | T→C | I106T (ATC→ACC) | arnE → | undecaprenyl‑phosphate‑alpha‑L‑Ara4N flippase ‑ ArnE subunit |
| RA | 2,393,746 | A→T | F434Y (TTC→TAC) | nuoL ← | NADH:quinone oxidoreductase subunit L |
| RA | 2,397,254 | G→A | D63D (GAC→GAT) | nuoH ← | NADH:quinone oxidoreductase subunit H |
| RA | 2,407,333 | (A)7→8 | intergenic (‑692/‑228) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| RA | 2,410,843 | A→G | Y170Y (TAT→TAC) | yfbS ← | putative transporter YfbS |
| RA | 2,411,993 | Δ1 bp | coding (97/651 nt) | hxpA ← | hexitol phosphatase A |
| RA | 2,412,278 | T→C | Y106C (TAT→TGT) | yfbU ← | UPF0304 family protein YfbU |
| RA | 2,424,682 | A→T | D184E (GAT→GAA) | hisM ← | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, membrane subunit HisM |
| RA | 2,437,410 | G→T | P148T (CCT→ACT) | pdxB ← | erythronate‑4‑phosphate dehydrogenase |
| RA | 2,440,619 | G→A | A329A (GCC→GCT) | fabB ← | beta‑ketoacyl‑[acyl carrier protein] synthase I |
| RA | 2,448,094 | G→A | P116L (CCG→CTG) | prmB ← | 50S ribosomal subunit protein L3 N(5)‑glutamine methyltransferase |
| RA | 2,451,016 | A→G | D20D (GAT→GAC) | yfcQ ← | putative fimbrial protein YfcQ |
| RA | 2,460,058 | (T)6→7 | coding (412/1311 nt) | fadI ← | 3‑ketoacyl‑CoA thiolase FadI |
| RA | 2,485,331 | G→A | E320K (GAA→AAA) | evgS → | sensory histidine kinase EvgS |
| RA | 2,517,367 | (A)5→4 | coding (466/2190 nt) | pdeA ← | putative c‑di‑GMP phosphodiesterase PdeA |
| RA | 2,522,608 | C→T | intergenic (‑131/+121) | xapR ← / ← xapB | DNA‑binding transcriptional activator XapR/xanthosine:H(+) symporter XapB |
| RA | 2,523,941 | Δ1 bp | coding (45/1257 nt) | xapB ← | xanthosine:H(+) symporter XapB |
| RA | 2,532,368 | C→T | intergenic (+144/‑41) | cysZ → / → cysK | sulfate:H(+) symporter/O‑acetylserine sulfhydrylase A |
| RA | 2,551,120 | T→A | N33Y (AAC→TAC) | yfeY ← | DUF1131 domain‑containing lipoprotein YfeY |
| RA | 2,552,889 | G→A | D180N (GAC→AAC) | amiA → | N‑acetylmuramoyl‑L‑alanine amidase A |
| RA | 2,560,201 | T→C | intergenic (+135/‑56) | intZ → / → yffL | CPZ‑55 prophage; putative phage integrase IntZ/CPZ‑55 prophage; uncharacterized protein YffL |
| RA | 2,569,793 | Δ1 bp | coding (545/837 nt) | eutJ ← | putative chaperonin, ethanolamine utilization protein |
| RA | 2,590,988 | G→A | intergenic (‑122/‑259) | ypfM ← / → yffB | uncharacterized protein YpfM/putative reductase YffB |
| RA | 2,619,147 | C→T | S338S (TCG→TCA) | uraA ← | hypothetical protein |
| RA | 2,631,603 | G→A | I311I (ATC→ATT) | guaA ← | GMP synthetase |
| RA | 2,648,726 | G→A | L1188F (CTT→TTT) | yfhM ← | alpha2‑macroglobulin |
| RA | 2,659,399 | Δ1 bp | coding (69/516 nt) | hscB ← | co‑chaperone for [Fe‑S] cluster biosynthesis |
| RA | 2,674,542 | C→A | P49P (CCG→CCT) | yphB ← | putative aldose 1‑epimerase YphB |
| RA | 2,677,262 | (T)6→7 | coding (1100/1512 nt) | yphE ← | putative ABC transporter ATP‑binding protein YphE |
| RA | 2,689,761 | G→T | R446R (CGC→CGA) | glrK ← | sensory histidine kinase GlrK |
| RA | 2,693,373 | G→C | A724G (GCC→GGC) | purL ← | phosphoribosylformylglycinamide synthetase |
| RA | 2,695,721 | G→A | intergenic (‑178/‑80) | purL ← / → mltF | phosphoribosylformylglycinamide synthetase/membrane‑bound lytic murein transglycosylase F |
| RA | 2,700,633 | T→C | V122V (GTA→GTG) | acpS ← | holo‑[acyl‑carrier‑protein] synthase |
| RA | 2,715,326 | Δ1 bp | intergenic (‑6/‑97) | yfiE ← / → eamB | putative LysR‑type DNA‑binding transcriptional regulator YfiE/cysteine/O‑acetylserine exporter EamB |
| RA | 2,717,453 | G→A | intergenic (+10/+38) | ung → / ← yfiF | uracil‑DNA glycosylase/putative methyltransferase |
| RA | 2,717,817 | C→T | A238T (GCG→ACG) | yfiF ← | putative methyltransferase |
| RA | 2,718,229 | C→A | L100F (TTG→TTT) | yfiF ← | putative methyltransferase |
| RA | 2,718,430 | C→T | G33G (GGG→GGA) | yfiF ← | putative methyltransferase |
| RA | 2,720,213 | A→C | E87D (GAA→GAC) | patZ → | peptidyl‑lysine acetyltransferase |
| RA | 2,722,767 | T→C | L14P (CTT→CCT) | pssA → | phosphatidylserine synthase |
| JC JC | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| RA | 2,744,198 | T→C | K111K (AAA→AAG) | rplS ← | 50S ribosomal subunit protein L19 |
| RA | 2,751,789 | Δ1 bp | intergenic (+80/‑6) | nadK → / → recN | NAD kinase/DNA repair protein RecN |
| RA | 2,766,597 | A→G | E227G (GAA→GGA) | rnlA → | CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system |
| RA | 2,773,609 | A→C | T98P (ACA→CCA) | yfjW → | CP4‑57 prophage; uncharacterized protein YfjW |
| RA | 2,774,632 | (A)7→6 | coding (1315/1704 nt) | yfjW → | CP4‑57 prophage; uncharacterized protein YfjW |
| RA | 2,774,809 | (A)7→6 | coding (1492/1704 nt) | yfjW → | CP4‑57 prophage; uncharacterized protein YfjW |
| RA | 2,774,880 | T→C | Y521Y (TAT→TAC) | yfjW → | CP4‑57 prophage; uncharacterized protein YfjW |
| RA | 2,788,669 | Δ1 bp | intergenic (+20/‑316) | ygaQ → / → csiD | putative uncharacterized protein YgaQ/PF08943 family protein CsiD |
| RA | 2,826,470 | (A)8→9 | coding (79/960 nt) | srlE → | sorbitol‑specific PTS enzyme IIBC1 component |
| RA | 2,859,176 | T→G | I695S (ATC→AGC) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,865,044 | A→G | intergenic (+32/‑57) | ygbM → / → ygbN | putative 2‑oxo‑tetronate isomerase YgbM/putative transporter YgbN |
| RA | 2,867,382 | G→T | A57E (GCG→GAG) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,882,617 | T→C | A7A (GCA→GCG) | casB ← | type I‑E CRISPR system Cascade subunit CasB |
| RA | 2,883,008 | C→A | V377V (GTG→GTT) | casA ← | type I‑E CRISPR system Cascade subunit CasA |
| RA | 2,886,389 | C→T | K277K (AAG→AAA) | cas3 ← | CRISPR‑associated endonuclease/helicase Cas3 |
| RA | 2,887,571 | Δ1 bp | intergenic (+163/+7) | sokX → / ← cysH | small RNA SokX/phosphoadenosine phosphosulfate reductase |
| RA | 2,889,110 | T→C | K330K (AAA→AAG) | cysI ← | sulfite reductase, hemoprotein subunit |
| RA | 2,927,903 | G→A | intergenic (+231/‑326) | ppnN → / → sdaC | nucleotide 5'‑monophosphate nucleosidase/serine:H(+) symporter SdaC |
| RA | 2,934,575 | T→C | I114T (ATA→ACA) | fucP → | L‑fucose:H(+) symporter |
| RA | 2,940,603 | Δ1 bp | coding (641/1101 nt) | rlmM ← | 23S rRNA 2'‑O‑ribose C2498 methyltransferase |
| RA | 2,966,553 | C→G | A628P (GCC→CCC) | ptsP ← | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| RA | 2,973,077 | T→C | V262V (GTA→GTG) | lplT ← | lysophospholipid transporter |
| RA | 2,989,488 | (A)8→9 | coding (185/483 nt) | yqeJ → | protein YqeJ |
| RA | 2,989,682 | (T)5→4 | coding (379/483 nt) | yqeJ → | protein YqeJ |
| RA | 2,994,908 | C→T | intergenic (‑5/+29) | ygeK ← / ← ygeL | putative DNA‑binding transcriptional regulator YgeK/protein YgeL |
| RA | 3,001,812 | G→A | V490M (GTG→ATG) | xdhA → | putative xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| RA | 3,006,208 | G→A | intergenic (‑422/‑54) | ygeV ← / → ygeW | putative sigma(54)‑dependent transcriptional regulator YgeV/putative carbamoyltransferase YgeW |
| RA | 3,009,915 | C→T | H384H (CAC→CAT) | ygeY → | putative peptidase YgeY |
| RA | 3,010,255 | (T)7→8 | coding (228/1386 nt) | hyuA → | phenylhydantoinase |
| RA | 3,012,483 | Δ1 bp | intergenic (+90/+131) | yqeA → / ← yqeB | putative amino acid kinase YqeA/XdhC‑CoxI family protein YqeB |
| RA | 3,012,842 | C→A | E466D (GAG→GAT) | yqeB ← | XdhC‑CoxI family protein YqeB |
| RA | 3,015,957 | C→A | intergenic (+219/‑103) | mocA → / → ygfK | molybdenum cofactor cytidylyltransferase/putative oxidoreductase, Fe‑S subunit |
| RA | 3,043,323 | Δ1 bp | coding (301/312 nt) | yqfB ← | PUA‑like domain‑containing protein YqfB |
| RA | 3,071,721 | G→A | A301V (GCG→GTG) | pgk ← | phosphoglycerate kinase |
| RA | 3,077,240 | C→A | V73F (GTT→TTT) | yggP ← | putative zinc‑binding dehydrogenase YggP |
| RA | 3,080,994 | G→A | R214R (CGC→CGT) | tktA ← | transketolase 1 |
| RA | 3,099,719 | T→A | D337V (GAT→GTT) | ansB ← | L‑asparaginase 2 |
| RA | 3,112,442 | T→G | pseudogene (479/867 nt) | yghF ← | putative type II secretion system C‑type protein |
| RA | 3,116,466 | C→T | G883S (GGC→AGC) | yghJ ← | putative lipoprotein YghJ |
| RA | 3,119,306 | T→A | intergenic (‑194/+291) | yghJ ← / ← glcA | putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA |
| RA | 3,141,969 | G→C | P341A (CCG→GCG) | hybC ← | hydrogenase 2 large subunit |
| RA | 3,168,013 | (T)6→5 | coding (234/396 nt) | mqsA ← | antitoxin of the MqsRA toxin‑antitoxin system/DNA‑binding transcriptional repressor MqsA |
| RA | 3,178,531 | G→A | L139L (TTG→TTA) | tolC → | outer membrane channel TolC |
| RA | 3,185,497 | T→C | G28G (GGT→GGC) | ygiL → | putative fimbrial protein YgiL |
| RA | 3,189,625 | C→A | pseudogene (2194/2434 nt) | yqiG → | putative outer membrane usher protein YqiG |
| RA | 3,190,185 | T→C | L102P (CTT→CCT) | yqiH → | putative fimbrial chaperone YqiH |
| RA | 3,191,452 | (T)6→7 | coding (821/1065 nt) | yqiI → | putative fimbrial protein YqiI |
| RA | 3,192,830 | T→C | I208T (ATA→ACA) | yqiJ → | putative inner membrane protein |
| RA | 3,195,798 | C→T | G319D (GGC→GAC) | rfaE ← | fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase |
| RA | 3,243,047 | A→T | Y90N (TAT→AAT) | uxaA ← | D‑altronate dehydratase |
| RA | 3,255,204 | G→A | A54A (GCG→GCA) | yhaL → | uncharacterized protein YhaL |
| RA | 3,268,686 | (T)6→7 | coding (272/1188 nt) | yhaC → | uncharacterized protein YhaC |
| RA | 3,283,965 | Δ1 bp | coding (823/861 nt) | kbaY → | tagatose‑1,6‑bisphosphate aldolase 1 subunit KbaY |
| RA | 3,324,530 | C→T | A128T (GCG→ACG) | folP ← | dihydropteroate synthase |
| RA | 3,334,826 | A→C | intergenic (+145/‑83) | ispB → / → sfsB | all‑trans‑octaprenyl‑diphosphate synthase/putative transcriptional regulator SfsB |
| RA | 3,340,040 | A→C | V9G (GTC→GGC) | mlaF ← | intermembrane phospholipid transport system, ATP binding subunit MlaF |
| RA | 3,345,527 | T→C | Y271H (TAT→CAT) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| RA | 3,353,250 | Δ1 bp | coding (801/930 nt) | yhcC ← | radical SAM family oxidoreductase YhcC |
| RA | 3,353,378 | C→G | A225P (GCG→CCG) | yhcC ← | radical SAM family oxidoreductase YhcC |
| RA | 3,354,361 | G→A | intergenic (‑311/‑364) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,356,205 | T→A | V494E (GTG→GAG) | gltB → | glutamate synthase subunit GltB |
| RA | 3,361,076 | T→C | intergenic (+460/‑100) | gltD → / → gltF | glutamate synthase subunit GltD/periplasmic protein GltF |
| RA | 3,362,820 | C→T | T5M (ACG→ATG) | yhcD → | putative fimbrial usher protein YhcD |
| RA | 3,366,970 | Δ1 bp | coding (45/717 nt) | yhcF → | DUF1120 domain‑containing protein YhcF |
| RA | 3,431,546 | G→T | N139K (AAC→AAA) | yrdD ← | putative DNA topoisomerase |
| RA | 3,454,461 | C→T | W313* (TGG→TAG) | gspA ← | Type II secretion system protein GspA |
| RA | 3,459,938 | T→C | I41T (ATT→ACT) | gspF → | Type II secretion system protein GspF |
| RA | 3,471,692 | G→T | A608E (GCG→GAG) | fusA ← | elongation factor G |
| RA | 3,490,253 | T→C | intergenic (‑73/+13) | argD ← / ← pabA | N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase/aminodeoxychorismate synthase subunit 2 |
| RA | 3,526,256 | T→C | intergenic (‑107/‑213) | nudE ← / → igaA | ADP‑sugar diphosphatase NudE/inner membrane protein ‑ inhibits the Rcs signaling pathway |
| RA | 3,540,248 | T→C | L29P (CTT→CCT) | feoA → | ferrous iron transport protein A |
| RA | 3,550,685 | T→C | N597D (AAC→GAC) | malP ← | maltodextrin phosphorylase |
| RA | 3,559,491 | G→A | W408* (TGG→TGA) | rtcR → | DNA‑binding transcriptional activator RtcR |
| RA | 3,561,929 | T→C | intergenic (‑106/‑84) | glpE ← / → glpD | thiosulfate sulfurtransferase GlpE/aerobic glycerol 3‑phosphate dehydrogenase |
| RA | 3,567,517 | G→A | H173Y (CAC→TAC) | glgA ← | glycogen synthase |
| RA | 3,584,652 | (T)6→8 | intergenic (+93/‑107) | yrhD → / → yrhB | uncharacterized protein YrhD/putative heat shock chaperone |
| RA | 3,588,752 | Δ1 bp | coding (429/1071 nt) | ugpC ← | sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit |
| RA | 3,594,418 | C→G | V355L (GTG→CTG) | livM ← | branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM |
| RA | 3,597,464 | C→T | A33T (GCG→ACG) | livK ← | L‑leucine/L‑phenylalanine ABC transporter periplasmic binding protein |
| RA | 3,599,709 | (T)5→6 | intergenic (‑51/+220) | livJ ← / ← rpoH | branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor |
| RA | 3,651,128 | (T)7→8 | intergenic (+466/‑163) | arsC → / → yhiS | arsenate reductase/putative uncharacterized protein YhiS |
| RA | 3,652,004 | A→G | pseudogene (714/746 nt) | yhiS → | putative uncharacterized protein YhiS |
| RA | 3,653,763 | A→G | intergenic (+50/‑198) | yhiS → / → slp | putative uncharacterized protein YhiS/starvation lipoprotein |
| RA | 3,667,617 | (A)6→5 | intergenic (‑37/+174) | gadA ← / ← ccp | glutamate decarboxylase A/cytochrome c peroxidase |
| RA | 3,690,503 | G→C | A702G (GCC→GGC) | bcsB ← | cellulose synthase periplasmic subunit |
| RA | 3,708,194 | (A)7→8 | intergenic (‑489/+422) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,711,450 | C→A | M186I (ATG→ATT) | yhjX ← | putative pyruvate transporter |
| RA | 3,744,318 | A→C | intergenic (+108/‑10) | yiaL → / → yiaM | DUF386 domain‑containing protein YiaL/2,3‑diketo‑L‑gulonate:Na(+) symporter ‑ membrane subunit |
| RA | 3,747,446 | (A)5→4 | coding (363/1497 nt) | lyxK → | L‑xylulose kinase |
| RA | 3,785,967 | G→A | V236V (GTG→GTA) | gpmM → | 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| RA | 3,795,757 | G→C | A277P (GCG→CCG) | waaF → | ADP‑heptose‑‑LPS heptosyltransferase 2 |
| RA | 3,797,041 | (T)8→7 | coding (94/1260 nt) | waaL → | O‑antigen ligase |
| RA | 3,797,159 | (A)6→5 | coding (212/1260 nt) | waaL → | O‑antigen ligase |
| RA | 3,802,110 | G→A | L317F (CTT→TTT) | waaO ← | UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase |
| RA | 3,804,744 | Δ1 bp | coding (373/936 nt) | waaS ← | lipopolysaccharide core biosynthesis protein |
| RA | 3,815,814 | C→T | intergenic (‑46/+49) | pyrE ← / ← rph | orotate phosphoribosyltransferase/truncated RNase PH |
| RA | 3,835,684 | C→A | W82C (TGG→TGT) | yicJ ← | putative xyloside transporter YicJ |
| RA | 3,836,095 | Δ1 bp | intergenic (‑166/‑127) | yicJ ← / → selC | putative xyloside transporter YicJ/tRNA‑Sec |
| RA | 3,843,177 | G→A | H205Y (CAT→TAT) | adeQ ← | adenine transporter |
| RA | 3,847,479 | Δ1 bp | coding (1146/1320 nt) | uhpC ← | inner membrane protein sensing glucose‑6‑phosphate |
| RA | 3,851,100 | T→C | E562G (GAA→GGA) | ilvB ← | acetohydroxy acid synthase I subunit IlvB |
| RA | 3,855,366 | A→T | S82R (AGT→AGA) | yidF ← | uncharacterized protein YidF |
| RA | 3,860,991 | C→A | R237S (CGT→AGT) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,863,817 | A→T | intergenic (‑214/‑82) | glvC ← / → yidP | putative PTS enzyme II component GlvC/putative DNA‑binding transcriptional regulator YidP |
| RA | 3,869,395 | Δ1 bp | coding (19/1065 nt) | cbrA → | colicin M resistance protein |
| RA | 3,887,769 | A→C | A314A (GCA→GCC) | mnmE → | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit |
| RA | 3,896,626 | A→C | intergenic (‑17/‑148) | adeP ← / → yieH | adenine:H(+) symporter/6‑phosphogluconate phosphatase |
| RA | 3,899,560 | C→T | D340N (GAT→AAT) | yieL ← | putative hydrolase YieL |
| RA | 3,908,040 | G→A | D109D (GAC→GAT) | pstB ← | phosphate ABC transporter ATP binding subunit |
| RA | 3,909,930 | C→T | V157I (GTT→ATT) | pstC ← | phosphate ABC transporter membrane subunit PstC |
| RA | 3,911,703 | G→A | intergenic (‑178/+136) | pstS ← / ← glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,917,576 | Δ1 bp | coding (690/864 nt) | atpG ← | ATP synthase F1 complex subunit gamma |
| RA | 3,921,264 | T→C | Y263C (TAT→TGT) | atpB ← | ATP synthase Fo complex subunit a |
| RA | 3,941,650 | A→G | intergenic (‑323/‑158) | yieP ← / → rrsC | putative transcriptional regulator YieP/16S ribosomal RNA |
| RA | 3,948,026 | C→T | intergenic (‑59/‑60) | hdfR ← / → maoP | DNA‑binding transcriptional dual regulator HdfR/macrodomain Ori protein |
| RA | 3,949,783 | (T)7→6 | coding (187/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| RA | 3,965,557 | (T)8→9 | coding (74/1266 nt) | rhlB ← | ATP‑dependent RNA helicase RhlB |
| RA | 3,980,128 | T→C | V58A (GTC→GCC) | rffM → | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase |
| RA | 4,007,813 | Δ1 bp | coding (57/621 nt) | rhtC → | L‑threonine exporter |
| RA | 4,007,952 | A→G | K66E (AAA→GAA) | rhtC → | L‑threonine exporter |
| RA | 4,025,344 | C→T | N119N (AAC→AAT) | ubiD → | 3‑octaprenyl‑4‑hydroxybenzoate decarboxylase |
| RA | 4,027,665 | C→T | A370T (GCG→ACG) | fadA ← | 3‑ketoacyl‑CoA thiolase |
| RA | 4,054,735 | G→A | H182Y (CAT→TAT) | glnG ← | DNA‑binding transcriptional dual regulator NtrC |
| RA | 4,063,091 | T→A | I282N (ATC→AAC) | yihN → | putative transporter YihN |
| RA | 4,098,551 | A→G | G272G (GGA→GGG) | rhaS → | DNA‑binding transcriptional activator RhaS |
| RA | 4,109,886 | T→C | intergenic (+63/‑44) | sbp → / → cdh | sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp/CDP‑diacylglycerol diphosphatase |
| RA | 4,113,386 | G→A | A32T (GCT→ACT) | uspD → | universal stress protein D |
| RA | 4,156,999 | A→G | L50L (TTA→TTG) | argH → | argininosuccinate lyase |
| RA | 4,164,740 | G→A | V368I (GTC→ATC) | btuB → | cobalamin/cobinamide outer membrane transporter |
| RA | 4,175,853 | (T)6→5 | intergenic (+24/‑91) | thrT → / → tufB | tRNA‑Thr/translation elongation factor Tu 2 |
| RA | 4,177,057 | G→A | G372S (GGT→AGT) | tufB → | translation elongation factor Tu 2 |
| RA | 4,196,457 | C→T | D118N (GAT→AAT) | rsd ← | regulator of sigma D |
| RA | 4,215,265 | G→A | intergenic (+56/‑213) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,237,643 | (A)7→8 | coding (10/2097 nt) | yjbH → | YjbH family protein |
| RA | 4,247,104 | (A)7→8 | coding (321/1116 nt) | malK → | maltose ABC transporter ATP binding subunit |
| RA | 4,254,080 | C→T | R796H (CGT→CAT) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,260,908 | A→G | N104D (AAC→GAC) | yjbM → | uncharacterized protein YjbM |
| RA | 4,267,126 | G→A | V5I (GTT→ATT) | tyrB → | tyrosine aminotransferase |
| RA | 4,268,487 | (T)7→8 | intergenic (+180/+322) | tyrB → / ← yjbS | tyrosine aminotransferase/uncharacterized protein YjbS |
| RA | 4,268,725 | G→A | intergenic (+418/+84) | tyrB → / ← yjbS | tyrosine aminotransferase/uncharacterized protein YjbS |
| RA | 4,272,989 | T→A | I295F (ATC→TTC) | uvrA ← | excision nuclease subunit A |
| RA | 4,274,110 | (T)7→8 | intergenic (‑239/‑15) | uvrA ← / → ssb | excision nuclease subunit A/ssDNA‑binding protein |
| RA | 4,290,611 | G→A | G46S (GGC→AGC) | nrfD → | putative menaquinol‑cytochrome c reductase subunit NrfD |
| RA | 4,291,288 | G→A | G271G (GGG→GGA) | nrfD → | putative menaquinol‑cytochrome c reductase subunit NrfD |
| RA | 4,295,894 | T→C | intergenic (+100/+542) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,308,436 | A→C | F15V (TTT→GTT) | alsE ← | D‑allulose‑6‑phosphate 3‑epimerase |
| RA | 4,310,656 | (T)7→6 | coding (325/1533 nt) | alsA ← | D‑allose ABC transporter ATP binding subunit |
| RA | 4,312,265 | C→T | E243K (GAA→AAA) | alsR ← | DNA‑binding transcriptional repressor AlsR |
| RA | 4,368,325 | C→T | M1M (ATG→ATA) † | aspA ← | aspartate ammonia‑lyase |
| RA | 4,371,109 | G→A | V29I (GTT→ATT) | groL → | chaperonin GroEL |
| RA | 4,412,023 | (T)7→8 | coding (45/399 nt) | yjfL → | conserved inner membrane protein YjfL |
| RA | 4,413,180 | (A)5→4 | coding (153/1164 nt) | yjfC → | putative acid‑‑amine ligase YjfC |
| RA | 4,437,930 | (A)6→5 | coding (224/939 nt) | ytfI → | protein YtfI |
| RA | 4,460,452 | G→A | intergenic (‑88/+70) | nrdG ← / ← nrdD | anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,475,523 | G→A | W29* (TGG→TGA) | yjgL → | protein YjgL |
| RA | 4,479,972 | (T)8→9 | coding (243/1197 nt) | yjgN → | conserved inner membrane protein YjgN |
| RA | 4,494,616 | A→G | intergenic (‑210/‑7) | idnD ← / → idnK | L‑idonate 5‑dehydrogenase/D‑gluconate kinase, thermosensitive |
| RA | 4,503,704 | A→G | intergenic (‑273/‑354) | insG ← / → yjhB | KpLE2 phage‑like element; IS4 putative transposase/putative sialic acid transporter |
| RA | 4,505,023 | T→C | G322G (GGT→GGC) | yjhB → | putative sialic acid transporter |
| RA | 4,506,193 | (A)8→9 | coding (907/1119 nt) | yjhC → | KpLE2 phage‑like element; putative oxidoreductase YjhC |
| RA | 4,506,209 | C→T | A308V (GCC→GTC) | yjhC → | KpLE2 phage‑like element; putative oxidoreductase YjhC |
| RA | 4,511,280 | A→G | F60L (TTT→CTT) | fecE ← | ferric citrate ABC transporter ATP binding subunit |
| RA | 4,523,074 | Δ1 bp | coding (1021/1968 nt) | yjhG ← | KpLE2 phage‑like element; D‑xylonate dehydratase |
| RA | 4,527,240 | T→A | T100S (ACT→TCT) | sgcE ← | KpLE2 phage‑like element; putative epimerase SgcE |
| RA | 4,535,463 | T→C | pseudogene (449/1017 nt) | yjhR → | KpLE2 phage‑like element; PLD‑like domain‑containing protein YjhR |
| RA | 4,536,178 | A→G | intergenic (+147/+436) | yjhR → / ← nanS | KpLE2 phage‑like element; PLD‑like domain‑containing protein YjhR/N‑acetyl‑9‑O‑acetylneuraminate esterase |
| RA | 4,556,483 | (A)6→5 | intergenic (‑163/‑91) | yjiC ← / → ytiC | uncharacterized protein YjiC/protein YtiC |
| RA | 4,577,355 | G→A | Q202* (CAA→TAA) | mcrC ← | 5‑methylcytosine‑specific restriction enzyme subunit McrC |
| RA | 4,595,481 | A→G | V124A (GTT→GCT) | lgoR ← | putative DNA‑binding transcriptional regulator LgoR |
| RA | 4,596,220 | T→A | D77E (GAT→GAA) | lgoD → | L‑galactonate oxidoreductase |
| RA | 4,604,045 | (A)7→8 | coding (569/726 nt) | yjjQ → | DNA‑binding transcriptional repressor YjjQ |
| RA | 4,607,869 | G→A | G23S (GGC→AGC) | holD → | DNA polymerase III subunit psi |
| RA | 4,633,497 | G→T | S83R (AGC→AGA) | yjjX ← | ITPase/XTPase |
| RA | 4,638,175 | A→G | intergenic (+55/‑3) | creC → / → creD | sensory histidine kinase CreC/putative inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 236068 | 236776 | 709 | 4 [3] | [0] 5 | dnaQ | DNA polymerase III subunit epsilon |
| * | * | ÷ | NC_000913 | 2818121–2818144 | 2818213–2818197 | 54–93 | 4 [3] | [3] 4 | [argZ]–[argY] | [argZ],[argY] |
| * | * | ÷ | NC_000913 | 3423728–3424234 | 3424580–3424238 | 5–853 | 4 [3] | [3] 4 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 4 (0.120) | 12 (0.470) | 11/128 | 1.0 | 77.0% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 4 (0.160) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 4 (0.120) | 19 (0.740) | 18/128 | 0.4 | 84.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 4 (0.160) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||