breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	2,154	C→T	15.2%	D606D (GAC→GAT)	thrA →	fused aspartokinase I and homoserine dehydrogenase I
RA	15,386	C→T	19.0%	intergenic (+88/+59)	dnaJ → / ← mokC	chaperone Hsp40, co‑chaperone with DnaK/regulatory protein for HokC, overlaps CDS of hokC
RA	51,837	G→A	50.0%	P182S (CCG→TCG)	surA ←	peptidyl‑prolyl cis‑trans isomerase
RA	53,515	G→A	14.1%	P425S (CCT→TCT)	imp ←	exported protein required for envelope biosynthesis and integrity
RA	105,984	T→A	5.1%	Y103F (TAC→TTC)	aroP ←	aromatic amino acid transporter
RA	105,988	G→T	7.4%	L102M (CTG→ATG)	aroP ←	aromatic amino acid transporter
RA	121,875	C→T	12.1%	A18V (GCT→GTT)	cueO →	multicopper oxidase (laccase)
RA	161,367	A→G	18.6%	N27S (AAC→AGC)	cdaR →	DNA‑binding transcriptional regulator
RA	165,160	A→G	15.5%	F772F (TTT→TTC)	glnD ←	uridylyltransferase
RA	183,899	G→A	45.3%	L194L (CTG→CTA)	rnhB →	ribonuclease HII, degrades RNA of DNA‑RNA hybrids
RA	186,630	C→T	41.7%	H894Y (CAT→TAT)	dnaE →	DNA polymerase III alpha subunit
RA	189,184	G→T	9.2%	V227V (GTG→GTT)	ldcC →	lysine decarboxylase 2, constitutive
RA	189,194	G→T	9.3%	A231S (GCC→TCC) ‡	ldcC →	lysine decarboxylase 2, constitutive
RA	189,196	C→T	9.4%	A231A (GCC→GCT) ‡	ldcC →	lysine decarboxylase 2, constitutive
RA	189,199	G→T	8.9%	A232A (GCG→GCT)	ldcC →	lysine decarboxylase 2, constitutive
RA	189,203	T→G	7.4%	S234A (TCC→GCC) ‡	ldcC →	lysine decarboxylase 2, constitutive
RA	189,205	C→A	6.9%	S234S (TCC→TCA) ‡	ldcC →	lysine decarboxylase 2, constitutive
RA	189,211	T→C	6.6%	S236S (AGT→AGC)	ldcC →	lysine decarboxylase 2, constitutive
RA	189,214	G→C	6.0%	T237T (ACG→ACC)	ldcC →	lysine decarboxylase 2, constitutive
RA	189,215	C→A	5.8%	L238M (CTG→ATG) ‡	ldcC →	lysine decarboxylase 2, constitutive
RA	189,217	G→T	5.8%	L238L (CTG→CTT) ‡	ldcC →	lysine decarboxylase 2, constitutive
RA	189,218	T→C	5.5%	L239L (TTG→CTG)	ldcC →	lysine decarboxylase 2, constitutive
RA	189,619	A→C	9.9%	L372F (TTA→TTC)	ldcC →	lysine decarboxylase 2, constitutive
RA	189,622	G→T	10.1%	S373S (TCG→TCT)	ldcC →	lysine decarboxylase 2, constitutive
RA	189,631	G→C	8.7%	S376S (TCG→TCC)	ldcC →	lysine decarboxylase 2, constitutive
RA	189,632	C→A	8.5%	L377M (CTG→ATG)	ldcC →	lysine decarboxylase 2, constitutive
RA	189,641	A→G	11.2%	I380V (ATT→GTT)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,065	G→A	11.7%	R521H (CGT→CAT)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,069	G→C	12.2%	G522G (GGG→GGC)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,075	A→T	16.3%	V524V (GTA→GTT)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,078	A→T	17.0%	V525V (GTA→GTT)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,090	C→T	23.1%	G529G (GGC→GGT)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,093	T→G	21.1%	P530P (CCT→CCG)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,108	T→C	15.9%	F535F (TTT→TTC)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,111	C→G	14.3%	L536L (CTC→CTG)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,114	T→C	14.3%	F537F (TTT→TTC)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,117	T→C	14.6%	S538S (AGT→AGC)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,120	T→C	12.3%	I539I (ATT→ATC)	ldcC →	lysine decarboxylase 2, constitutive
RA	190,123	C→T	11.0%	G540G (GGC→GGT)	ldcC →	lysine decarboxylase 2, constitutive
RA	195,592	G→A	18.0%	T79T (ACC→ACT)	yaeF ←	predicted lipoprotein
RA	204,556	A→G	100%	intergenic (+156/‑28)	alaV → / → rrlH	tRNA‑Ala/23S ribosomal RNA
RA	217,941	A→T	9.4%	intergenic (‑33/‑73)	yafU ← / → yafF	predicted inner membrane protein/conserved hypothetical protein
RA	217,947	G→A	12.9%	intergenic (‑39/‑67)	yafU ← / → yafF	predicted inner membrane protein/conserved hypothetical protein
RA	217,959	A→G	13.8%	intergenic (‑51/‑55)	yafU ← / → yafF	predicted inner membrane protein/conserved hypothetical protein
RA	217,968	C→T	16.5%	intergenic (‑60/‑46)	yafU ← / → yafF	predicted inner membrane protein/conserved hypothetical protein
RA	217,977	C→T	8.3%	intergenic (‑69/‑37)	yafU ← / → yafF	predicted inner membrane protein/conserved hypothetical protein
RA	217,996	A→T	41.5%	intergenic (‑88/‑18)	yafU ← / → yafF	predicted inner membrane protein/conserved hypothetical protein
RA	218,030	A→G	30.4%	Y6C (TAC→TGC)	yafF →	conserved hypothetical protein
RA	218,049	C→T	26.9%	N12N (AAC→AAT)	yafF →	conserved hypothetical protein
RA	218,052	A→C	8.8%	A13A (GCA→GCC)	yafF →	conserved hypothetical protein
RA	218,082	T→C	9.0%	I23I (ATT→ATC)	yafF →	conserved hypothetical protein
RA	218,097	G→A	8.1%	L28L (TTG→TTA)	yafF →	conserved hypothetical protein
RA	218,106	G→T	39.7%	E31D (GAG→GAT)	yafF →	conserved hypothetical protein
RA	218,157	C→T	9.7%	D48D (GAC→GAT)	yafF →	conserved hypothetical protein
RA	218,166	C→T	18.7%	Y51Y (TAC→TAT)	yafF →	conserved hypothetical protein
RA	218,182	G→A	5.5%	A57T (GCG→ACG)	yafF →	conserved hypothetical protein
RA	219,287	G→A	5.2%	E41K (GAA→AAA)	ivy →	inhibitor of vertebrate C‑lysozyme
RA	222,988	T→G	15.0%	intergenic (+43/‑137)	lpcA → / → prfH	D‑sedoheptulose 7‑phosphate isomerase/predicted peptide chain release factor
RA	222,990	T→C	12.4%	intergenic (+45/‑135)	lpcA → / → prfH	D‑sedoheptulose 7‑phosphate isomerase/predicted peptide chain release factor
RA	222,997	T→A	22.8%	intergenic (+52/‑128)	lpcA → / → prfH	D‑sedoheptulose 7‑phosphate isomerase/predicted peptide chain release factor
RA	223,016	G→A	14.9%	intergenic (+71/‑109)	lpcA → / → prfH	D‑sedoheptulose 7‑phosphate isomerase/predicted peptide chain release factor
RA	223,627	T→A	17.2%	intergenic (+47/+10)	prfH → / ← pepD	predicted peptide chain release factor/aminoacyl‑histidine dipeptidase
RA	232,635	T→C	27.9%	N43D (AAC→GAC)	hemB ←	porphobilinogen synthase
RA	232,901	C→T	24.6%	intergenic (‑140/+30)	hemB ← / ← ykiB	porphobilinogen synthase/hypothetical protein
RA	242,863	G→A	6.6%	Q454* (CAA→TAA)	sbcC ←	exonuclease, dsDNA, ATP‑dependent
RA	244,476	A→G	14.0%	Y316H (TAT→CAT)	sbcD ←	exonuclease, dsDNA, ATP‑dependent
RA	269,535	C→T	59.7%	K12K (AAG→AAA)	ispA ←	geranyltranstransferase
RA	271,886	G→A	8.9%	G75G (GGC→GGT)	yajL ←	conserved hypothetical protein
RA	279,817	A→G	36.6%	V88A (GTG→GCG)	cyoA ←	cytochrome o ubiquinol oxidase subunit II
RA	310,779	C→G	7.4%	A698A (GCG→GCC)	acrB ←	multidrug efflux system protein
RA	310,785	A→G	7.3%	T696T (ACT→ACC)	acrB ←	multidrug efflux system protein
RA	310,788	C→T	7.0%	L695L (CTG→CTA)	acrB ←	multidrug efflux system protein
RA	310,791	T→G	7.4%	K694N (AAA→AAC) ‡	acrB ←	multidrug efflux system protein
RA	310,792	T→G	7.2%	K694T (AAA→ACA) ‡	acrB ←	multidrug efflux system protein
RA	310,793	T→C	7.4%	K694E (AAA→GAA) ‡	acrB ←	multidrug efflux system protein
RA	310,794	T→A	7.4%	E693D (GAA→GAT)	acrB ←	multidrug efflux system protein
RA	310,803	A→C	6.2%	L690L (CTT→CTG)	acrB ←	multidrug efflux system protein
RA	310,806	G→C	6.0%	G689G (GGC→GGG)	acrB ←	multidrug efflux system protein
RA	310,815	G→A	5.8%	D686D (GAC→GAT)	acrB ←	multidrug efflux system protein
RA	310,821	C→T	5.9%	L684L (CTG→CTA) ‡	acrB ←	multidrug efflux system protein
RA	310,823	G→A	5.9%	L684L (CTG→TTG) ‡	acrB ←	multidrug efflux system protein
RA	311,427	T→A	5.1%	V482V (GTA→GTT)	acrB ←	multidrug efflux system protein
RA	311,445	T→C	8.7%	S476S (TCA→TCG)	acrB ←	multidrug efflux system protein
RA	311,451	A→G	9.9%	I474I (ATT→ATC)	acrB ←	multidrug efflux system protein
RA	311,457	A→G	10.6%	I472I (ATT→ATC)	acrB ←	multidrug efflux system protein
RA	311,469	A→G	10.0%	R468R (CGT→CGC)	acrB ←	multidrug efflux system protein
RA	311,475	G→A	13.7%	I466I (ATC→ATT)	acrB ←	multidrug efflux system protein
RA	311,478	A→T	13.7%	A465A (GCT→GCA)	acrB ←	multidrug efflux system protein
RA	311,481	A→C	11.8%	G464G (GGT→GGG)	acrB ←	multidrug efflux system protein
RA	311,496	A→G	8.8%	F459F (TTT→TTC)	acrB ←	multidrug efflux system protein
RA	311,511	T→A	6.5%	V454V (GTA→GTT) ‡	acrB ←	multidrug efflux system protein
RA	311,513	C→T	6.8%	V454I (GTA→ATA) ‡	acrB ←	multidrug efflux system protein
RA	311,514	G→A	7.4%	F453F (TTC→TTT)	acrB ←	multidrug efflux system protein
RA	311,523	C→T	6.9%	S450S (TCG→TCA)	acrB ←	multidrug efflux system protein
RA	311,529	T→C	5.3%	V448V (GTA→GTG)	acrB ←	multidrug efflux system protein
RA	311,673	G→A	9.6%	L400L (CTC→CTT)	acrB ←	multidrug efflux system protein
RA	311,691	T→C	8.2%	T394T (ACA→ACG)	acrB ←	multidrug efflux system protein
RA	311,697	C→T	7.1%	T392T (ACG→ACA)	acrB ←	multidrug efflux system protein
RA	311,798	G→A	5.8%	L359L (CTG→TTG)	acrB ←	multidrug efflux system protein
RA	311,811	A→C	7.8%	V354V (GTT→GTG)	acrB ←	multidrug efflux system protein
RA	311,840	C→A	8.1%	V345F (GTC→TTC)	acrB ←	multidrug efflux system protein
RA	311,850	A→T	7.0%	V341V (GTT→GTA)	acrB ←	multidrug efflux system protein
RA	311,874	C→G	5.7%	V333V (GTG→GTC)	acrB ←	multidrug efflux system protein
RA	311,892	G→A	6.3%	Y327Y (TAC→TAT)	acrB ←	multidrug efflux system protein
RA	311,895	T→A	6.4%	P326P (CCA→CCT)	acrB ←	multidrug efflux system protein
RA	312,510	T→C	6.2%	E121E (GAA→GAG)	acrB ←	multidrug efflux system protein
RA	312,513	T→C	7.5%	Q120Q (CAA→CAG)	acrB ←	multidrug efflux system protein
RA	312,529	A→G	11.7%	M115T (ATG→ACG)	acrB ←	multidrug efflux system protein
RA	312,531	C→G	11.5%	A114A (GCG→GCC)	acrB ←	multidrug efflux system protein
RA	312,534	C→G	11.2%	L113L (CTG→CTC)	acrB ←	multidrug efflux system protein
RA	312,540	C→G	13.5%	L111L (CTG→CTC)	acrB ←	multidrug efflux system protein
RA	312,558	A→C	8.1%	V105V (GTT→GTG)	acrB ←	multidrug efflux system protein
RA	312,561	C→T	8.2%	Q104Q (CAG→CAA)	acrB ←	multidrug efflux system protein
RA	312,573	C→A	8.5%	A100A (GCG→GCT) ‡	acrB ←	multidrug efflux system protein
RA	312,575	C→G	6.7%	A100P (GCG→CCG) ‡	acrB ←	multidrug efflux system protein
RA	312,579	A→G	6.4%	T98T (ACT→ACC)	acrB ←	multidrug efflux system protein
RA	312,582	A→C	5.6%	G97G (GGT→GGG)	acrB ←	multidrug efflux system protein
RA	312,585	A→G	5.3%	S96S (TCT→TCC)	acrB ←	multidrug efflux system protein
RA	313,768	A→G	7.1%	S107S (AGT→AGC)	acrA ←	multidrug efflux system
RA	313,774	G→A	7.8%	Y105Y (TAC→TAT)	acrA ←	multidrug efflux system
RA	313,777	T→A	8.2%	T104T (ACA→ACT) ‡	acrA ←	multidrug efflux system
RA	313,778	G→T	7.7%	T104K (ACA→AAA) ‡	acrA ←	multidrug efflux system
RA	313,780	C→T	7.9%	A103A (GCG→GCA)	acrA ←	multidrug efflux system
RA	313,795	A→G	6.8%	P98P (CCT→CCC)	acrA ←	multidrug efflux system
RA	313,801	A→G	7.2%	I96I (ATT→ATC)	acrA ←	multidrug efflux system
RA	327,386	C→T	31.4%	S288F (TCC→TTC)	hemH →	ferrochelatase
RA	337,128	G→T	17.0%	intergenic (+100/+216)	ybaQ → / ← copA	predicted DNA‑binding transcriptional regulator/copper transporter
RA	337,146	T→G	10.9%	intergenic (+118/+198)	ybaQ → / ← copA	predicted DNA‑binding transcriptional regulator/copper transporter
RA	337,149	A→T	10.8%	intergenic (+121/+195)	ybaQ → / ← copA	predicted DNA‑binding transcriptional regulator/copper transporter
RA	337,151	C→G	21.7%	intergenic (+123/+193)	ybaQ → / ← copA	predicted DNA‑binding transcriptional regulator/copper transporter
RA	337,157	C→A	11.5%	intergenic (+129/+187)	ybaQ → / ← copA	predicted DNA‑binding transcriptional regulator/copper transporter
RA	349,124	C→T	25.3%	A474A (GCC→GCT)	gcl →	glyoxylate carboligase
RA	350,279	G→A	20.2%	intergenic (+6/‑94)	hyi → / → glxR	hydroxypyruvate isomerase/tartronate semialdehyde reductase, NADH‑dependent
RA	350,336	C→T	17.5%	intergenic (+63/‑37)	hyi → / → glxR	hydroxypyruvate isomerase/tartronate semialdehyde reductase, NADH‑dependent
RA	385,798	C→T	14.3%	G336G (GGC→GGT)	cstA →	carbon starvation protein
RA	385,804	G→A	14.5%	V338V (GTG→GTA)	cstA →	carbon starvation protein
RA	385,816	T→C	12.1%	H342H (CAT→CAC)	cstA →	carbon starvation protein
RA	385,831	T→C	9.2%	S347S (TCT→TCC)	cstA →	carbon starvation protein
RA	385,834	G→T	6.5%	G348G (GGG→GGT)	cstA →	carbon starvation protein
RA	412,090	A→G	22.9%	V89A (GTG→GCG)	leuS ←	leucyl‑tRNA synthetase
RA	412,492	C→T	18.7%	intergenic (‑137/+152)	leuS ← / ← lnt	leucyl‑tRNA synthetase/apolipoprotein N‑acyltransferase
RA	412,564	A→C	12.1%	intergenic (‑209/+80)	leuS ← / ← lnt	leucyl‑tRNA synthetase/apolipoprotein N‑acyltransferase
RA	442,284	G→A	48.0%	P493L (CCA→CTA)	speF ←	ornithine decarboxylase isozyme, inducible
RA	454,989	C→G	10.4%	L32L (CTG→CTC)	ybgH ←	predicted transporter
RA	454,992	C→T	10.4%	L31L (CTG→CTA) ‡	ybgH ←	predicted transporter
RA	454,994	G→A	10.4%	L31L (CTG→TTG) ‡	ybgH ←	predicted transporter
RA	455,013	G→A	10.2%	S24S (AGC→AGT)	ybgH ←	predicted transporter
RA	457,813	C→T	33.3%	Q41* (CAG→TAG)	ybgL →	predicted lactam utilization protein
RA	458,679	G→A	24.2%	G73S (GGC→AGC)	nei →	endonuclease VIII
RA	469,790	C→T	50.0%	L108L (CTG→TTG)	sucC →	succinyl‑CoA synthetase, beta subunit
RA	473,506	G→A	53.1%	K356K (AAG→AAA)	mngA →	fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzyme IIABC components
RA	505,424	T→C	8.3%	G128G (GGT→GGC)	ybhE →	6‑phosphogluconolactonase
RA	509,821	C→T	9.1%	intergenic (+46/‑137)	ybhI → / → ybhJ	predicted transporter/predicted hydratase
RA	509,855	G→C	13.8%	intergenic (+80/‑103)	ybhI → / → ybhJ	predicted transporter/predicted hydratase
RA	518,289	G→A	18.6%	D105N (GAT→AAT)	bioC →	predicted methltransferase, enzyme of biotin synthesis
RA	558,552	G→A	25.9%	intergenic (+102/‑202)	iaaA → / → cmr	L‑asparaginase/multidrug efflux system protein
RA	605,328	G→A	35.5%	P467P (CCG→CCA)	ycaM →	predicted transporter
RA	608,090	T→G	9.8%	N722H (AAC→CAC)	pflB ←	pyruvate formate lyase I
RA	608,091	T→C	9.8%	E721E (GAA→GAG)	pflB ←	pyruvate formate lyase I
RA	608,094	C→G	8.9%	M720I (ATG→ATC)	pflB ←	pyruvate formate lyase I
RA	608,097	C→G	8.9%	A719A (GCG→GCC)	pflB ←	pyruvate formate lyase I
RA	608,100	G→A	8.9%	D718D (GAC→GAT)	pflB ←	pyruvate formate lyase I
RA	608,103	G→C	8.6%	L717L (CTC→CTG)	pflB ←	pyruvate formate lyase I
RA	608,115	A→C	7.6%	R713R (CGT→CGG)	pflB ←	pyruvate formate lyase I
RA	608,118	G→A	8.2%	N712N (AAC→AAT)	pflB ←	pyruvate formate lyase I
RA	608,124	C→T	7.0%	V710V (GTG→GTA)	pflB ←	pyruvate formate lyase I
RA	608,142	C→T	5.7%	Q704Q (CAG→CAA)	pflB ←	pyruvate formate lyase I
RA	608,295	A→C	9.3%	A653A (GCT→GCG)	pflB ←	pyruvate formate lyase I
RA	608,298	A→C	9.1%	V652V (GTT→GTG)	pflB ←	pyruvate formate lyase I
RA	608,301	G→C	9.1%	S651S (TCC→TCG)	pflB ←	pyruvate formate lyase I
RA	608,304	A→C	7.8%	T650T (ACT→ACG)	pflB ←	pyruvate formate lyase I
RA	608,309	G→A	9.1%	L649L (CTG→TTG)	pflB ←	pyruvate formate lyase I
RA	608,310	A→T	9.1%	S648S (TCT→TCA)	pflB ←	pyruvate formate lyase I
RA	608,316	T→C	8.3%	V646V (GTA→GTG)	pflB ←	pyruvate formate lyase I
RA	608,319	T→G	8.2%	A645A (GCA→GCC)	pflB ←	pyruvate formate lyase I
RA	608,329	T→C	5.0%	Q642R (CAG→CGG)	pflB ←	pyruvate formate lyase I
RA	608,355	A→G	5.9%	G633G (GGT→GGC)	pflB ←	pyruvate formate lyase I
RA	608,706	G→A	8.7%	D516D (GAC→GAT)	pflB ←	pyruvate formate lyase I
RA	608,724	A→C	10.6%	S510S (TCT→TCG)	pflB ←	pyruvate formate lyase I
RA	608,727	G→A	10.6%	A509A (GCC→GCT)	pflB ←	pyruvate formate lyase I
RA	608,760	G→A	14.0%	I498I (ATC→ATT)	pflB ←	pyruvate formate lyase I
RA	608,766	G→A	13.7%	N496N (AAC→AAT)	pflB ←	pyruvate formate lyase I
RA	608,772	T→C	15.5%	A494A (GCA→GCG)	pflB ←	pyruvate formate lyase I
RA	608,775	A→G	16.1%	T493T (ACT→ACC) ‡	pflB ←	pyruvate formate lyase I
RA	608,776	G→C	15.6%	T493S (ACT→AGT) ‡	pflB ←	pyruvate formate lyase I
RA	608,787	T→C	13.3%	K489K (AAA→AAG) ‡	pflB ←	pyruvate formate lyase I
RA	608,788	T→A	13.2%	K489I (AAA→ATA) ‡	pflB ←	pyruvate formate lyase I
RA	608,789	T→C	13.3%	K489E (AAA→GAA) ‡	pflB ←	pyruvate formate lyase I
RA	608,790	A→C	14.1%	A488A (GCT→GCG)	pflB ←	pyruvate formate lyase I
RA	608,892	T→C	9.4%	K454K (AAA→AAG)	pflB ←	pyruvate formate lyase I
RA	608,895	T→C	9.4%	E453E (GAA→GAG)	pflB ←	pyruvate formate lyase I
RA	608,901	A→C	13.4%	V451V (GTT→GTG)	pflB ←	pyruvate formate lyase I
RA	608,904	G→C	15.0%	G450G (GGC→GGG)	pflB ←	pyruvate formate lyase I
RA	608,913	G→A	18.5%	I447I (ATC→ATT)	pflB ←	pyruvate formate lyase I
RA	608,922	C→G	19.0%	L444L (CTG→CTC)	pflB ←	pyruvate formate lyase I
RA	608,927	T→G	20.0%	M443L (ATG→CTG)	pflB ←	pyruvate formate lyase I
RA	608,928	G→C	19.7%	T442T (ACC→ACG)	pflB ←	pyruvate formate lyase I
RA	608,943	T→A	17.0%	A437A (GCA→GCT)	pflB ←	pyruvate formate lyase I
RA	608,946	A→G	16.3%	R436R (CGT→CGC)	pflB ←	pyruvate formate lyase I
RA	608,949	C→T	17.8%	A435A (GCG→GCA)	pflB ←	pyruvate formate lyase I
RA	608,955	G→A	13.0%	F433F (TTC→TTT)	pflB ←	pyruvate formate lyase I
RA	608,970	T→C	10.9%	K428K (AAA→AAG)	pflB ←	pyruvate formate lyase I
RA	608,978	C→T	8.5%	V426I (GTT→ATT)	pflB ←	pyruvate formate lyase I
RA	608,979	G→C	8.2%	I425M (ATC→ATG) ‡	pflB ←	pyruvate formate lyase I
RA	608,981	T→C	9.2%	I425V (ATC→GTC) ‡	pflB ←	pyruvate formate lyase I
RA	608,985	C→T	9.2%	P423P (CCG→CCA)	pflB ←	pyruvate formate lyase I
RA	608,991	T→G	7.4%	V421V (GTA→GTC)	pflB ←	pyruvate formate lyase I
RA	609,000	A→G	6.8%	A418A (GCT→GCC)	pflB ←	pyruvate formate lyase I
RA	609,759	A→C	10.9%	V165V (GTT→GTG)	pflB ←	pyruvate formate lyase I
RA	609,762	A→G	11.0%	G164G (GGT→GGC)	pflB ←	pyruvate formate lyase I
RA	609,777	A→G	15.1%	R159R (CGT→CGC)	pflB ←	pyruvate formate lyase I
RA	609,783	G→C	16.6%	I157M (ATC→ATG)	pflB ←	pyruvate formate lyase I
RA	609,786	G→A	17.3%	D156D (GAC→GAT)	pflB ←	pyruvate formate lyase I
RA	609,792	A→T	16.2%	T154T (ACT→ACA) ‡	pflB ←	pyruvate formate lyase I
RA	609,794	T→A	16.7%	T154S (ACT→TCT) ‡	pflB ←	pyruvate formate lyase I
RA	609,801	G→A	12.8%	D151D (GAC→GAT)	pflB ←	pyruvate formate lyase I
RA	609,804	G→A	8.3%	F150F (TTC→TTT)	pflB ←	pyruvate formate lyase I
RA	609,807	C→T	9.2%	V149V (GTG→GTA)	pflB ←	pyruvate formate lyase I
RA	660,873	G→A	16.6%	V76V (GTG→GTA)	ycbF →	predicted periplasmic pilini chaperone
RA	704,276	T→C	9.1%	L123L (CTA→CTG)	ymcA ←	conserved hypothetical protein
RA	705,295	A→G	18.4%	G32G (GGT→GGC)	ymcB ←	conserved hypothetical protein
RA	706,680	C→T	11.5%	R244K (AGG→AAG)	lpxL ←	lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase
RA	718,576	G→A	46.5%	intergenic (+19/‑91)	mviM → / → mviN	predicted oxidoreductase, NAD(P)‑binding Rossmann‑fold domain/predicted inner membrane protein
RA	729,603	A→C	25.0%	P207P (CCA→CCC)	fabD →	malonyl‑CoA‑[acyl‑carrier‑protein] transacylase
RA	749,764	G→A	57.1%	intergenic (‑135/+9)	ycfS ← / ← mfd	conserved hypothetical protein/transcription‑repair coupling factor
RA	757,423	C→T	59.3%	A283A (GCC→GCT)	lolE →	outer membrane‑specific lipoprotein transporter subunit
RA	775,500	T→C	22.6%	L375L (TTA→CTA) ‡	icd →	isocitrate dehydrogenase, specific for NADP+
RA	775,502	A→G	22.2%	L375L (TTA→TTG) ‡	icd →	isocitrate dehydrogenase, specific for NADP+
RA	775,532	C→T	15.9%	N385N (AAC→AAT)	icd →	isocitrate dehydrogenase, specific for NADP+
RA	775,535	G→C	15.9%	A386A (GCG→GCC)	icd →	isocitrate dehydrogenase, specific for NADP+
RA	775,538	A→G	13.6%	K387K (AAA→AAG)	icd →	isocitrate dehydrogenase, specific for NADP+
RA	775,547	C→T	10.6%	T390T (ACC→ACT)	icd →	isocitrate dehydrogenase, specific for NADP+
RA	775,559	G→A	9.9%	E394E (GAG→GAA)	icd →	isocitrate dehydrogenase, specific for NADP+
RA	775,571	T→A	10.0%	D398E (GAT→GAA)	icd →	isocitrate dehydrogenase, specific for NADP+
RA	775,580	A→G	8.9%	K401K (AAA→AAG)	icd →	isocitrate dehydrogenase, specific for NADP+
RA	775,607	C→A	8.9%	D410E (GAC→GAA)	icd →	isocitrate dehydrogenase, specific for NADP+
RA	784,369	A→G	30.9%	N324D (AAC→GAC)	umuC →	DNA polymerase V, subunit C
RA	793,951	G→A	18.0%	A112V (GCG→GTG)	cvrA ←	predicted cation/proton antiporter
RA	821,218	G→A	45.6%	L280L (CTG→CTA)	kdsA →	3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase
RA	821,576	T→G	21.9%	intergenic (‑113/+341)	ldrA ← / ← ldrC	toxic polypeptide, small/toxic polypeptide, small
RA	821,826	A→T	6.9%	intergenic (‑363/+91)	ldrA ← / ← ldrC	toxic polypeptide, small/toxic polypeptide, small
RA	822,222	T→A	11.7%	intergenic (‑198/+206)	ldrC ← / ← chaA	toxic polypeptide, small/calcium/sodium:proton antiporter
RA	822,224	G→T	11.4%	intergenic (‑200/+204)	ldrC ← / ← chaA	toxic polypeptide, small/calcium/sodium:proton antiporter
RA	822,578	C→T	40.0%	L317L (TTG→TTA)	chaA ←	calcium/sodium:proton antiporter
RA	825,519	C→T	50.8%	intergenic (‑241/‑85)	ychN ← / → ychP	conserved hypothetical protein/predicted invasin
RA	832,115	A→G	7.0%	P191P (CCA→CCG)	narG →	nitrate reductase 1, alpha subunit
RA	832,118	T→C	7.0%	I192I (ATT→ATC)	narG →	nitrate reductase 1, alpha subunit
RA	832,124	A→G	6.9%	A194A (GCA→GCG)	narG →	nitrate reductase 1, alpha subunit
RA	832,145	A→C	6.2%	A201A (GCA→GCC)	narG →	nitrate reductase 1, alpha subunit
RA	832,146	T→G	6.1%	S202A (TCG→GCG) ‡	narG →	nitrate reductase 1, alpha subunit
RA	832,148	G→C	6.1%	S202S (TCG→TCC) ‡	narG →	nitrate reductase 1, alpha subunit
RA	832,151	T→A	6.0%	G203G (GGT→GGA)	narG →	nitrate reductase 1, alpha subunit
RA	832,152	G→A	6.1%	A204T (GCA→ACA) ‡	narG →	nitrate reductase 1, alpha subunit
RA	832,154	A→G	6.0%	A204A (GCA→GCG) ‡	narG →	nitrate reductase 1, alpha subunit
RA	832,157	C→T	5.5%	R205R (CGC→CGT)	narG →	nitrate reductase 1, alpha subunit
RA	832,163	C→G	5.9%	L207L (CTC→CTG)	narG →	nitrate reductase 1, alpha subunit
RA	832,250	T→C	7.1%	T236T (ACT→ACC)	narG →	nitrate reductase 1, alpha subunit
RA	832,268	T→C	9.8%	A242A (GCT→GCC)	narG →	nitrate reductase 1, alpha subunit
RA	833,163	G→C	14.9%	V541L (GTC→CTC)	narG →	nitrate reductase 1, alpha subunit
RA	833,168	T→C	12.3%	G542G (GGT→GGC)	narG →	nitrate reductase 1, alpha subunit
RA	833,171	G→A	11.0%	A543A (GCG→GCA)	narG →	nitrate reductase 1, alpha subunit
RA	833,174	G→T	10.8%	G544G (GGG→GGT)	narG →	nitrate reductase 1, alpha subunit
RA	833,175	C→G	10.5%	L545V (CTG→GTG) ‡	narG →	nitrate reductase 1, alpha subunit
RA	833,177	G→T	10.5%	L545L (CTG→CTT) ‡	narG →	nitrate reductase 1, alpha subunit
RA	833,193	C→A	11.9%	L551I (CTC→ATC) ‡	narG →	nitrate reductase 1, alpha subunit
RA	833,195	C→G	12.0%	L551L (CTC→CTG) ‡	narG →	nitrate reductase 1, alpha subunit
RA	833,198	T→C	12.5%	D552D (GAT→GAC)	narG →	nitrate reductase 1, alpha subunit
RA	833,207	T→C	10.1%	Y555Y (TAT→TAC)	narG →	nitrate reductase 1, alpha subunit
RA	833,210	T→C	9.4%	R556R (CGT→CGC)	narG →	nitrate reductase 1, alpha subunit
RA	833,213	T→G	11.3%	G557G (GGT→GGG)	narG →	nitrate reductase 1, alpha subunit
RA	833,214	C→A	13.5%	L558M (CTG→ATG)	narG →	nitrate reductase 1, alpha subunit
RA	833,354	T→C	16.7%	R604R (CGT→CGC)	narG →	nitrate reductase 1, alpha subunit
RA	833,357	C→A	15.9%	H605Q (CAC→CAA)	narG →	nitrate reductase 1, alpha subunit
RA	833,369	T→C	10.7%	T609T (ACT→ACC)	narG →	nitrate reductase 1, alpha subunit
RA	833,372	T→G	10.7%	S610S (TCT→TCG)	narG →	nitrate reductase 1, alpha subunit
RA	833,381	T→C	11.1%	Y613Y (TAT→TAC)	narG →	nitrate reductase 1, alpha subunit
RA	833,933	C→T	14.7%	D797D (GAC→GAT)	narG →	nitrate reductase 1, alpha subunit
RA	833,939	T→C	14.5%	N799N (AAT→AAC)	narG →	nitrate reductase 1, alpha subunit
RA	833,942	T→C	13.3%	T800T (ACT→ACC)	narG →	nitrate reductase 1, alpha subunit
RA	833,966	C→T	21.6%	H808H (CAC→CAT)	narG →	nitrate reductase 1, alpha subunit
RA	833,972	G→T	23.2%	L810L (CTG→CTT)	narG →	nitrate reductase 1, alpha subunit
RA	833,993	C→G	9.7%	A817A (GCC→GCG)	narG →	nitrate reductase 1, alpha subunit
RA	834,620	T→A	6.5%	G1026G (GGT→GGA)	narG →	nitrate reductase 1, alpha subunit
RA	834,635	C→T	8.3%	H1031H (CAC→CAT)	narG →	nitrate reductase 1, alpha subunit
RA	834,639	C→T	8.1%	L1033L (CTG→TTG) ‡	narG →	nitrate reductase 1, alpha subunit
RA	834,641	G→A	8.1%	L1033L (CTG→CTA) ‡	narG →	nitrate reductase 1, alpha subunit
RA	834,644	C→T	8.4%	I1034I (ATC→ATT)	narG →	nitrate reductase 1, alpha subunit
RA	834,647	A→G	8.1%	P1035P (CCA→CCG)	narG →	nitrate reductase 1, alpha subunit
RA	834,653	T→C	8.7%	R1037R (CGT→CGC)	narG →	nitrate reductase 1, alpha subunit
RA	834,659	C→G	10.9%	L1039L (CTC→CTG)	narG →	nitrate reductase 1, alpha subunit
RA	834,662	T→G	11.0%	S1040S (TCT→TCG)	narG →	nitrate reductase 1, alpha subunit
RA	834,665	T→A	10.1%	G1041G (GGT→GGA)	narG →	nitrate reductase 1, alpha subunit
RA	834,668	T→C	10.2%	R1042R (CGT→CGC)	narG →	nitrate reductase 1, alpha subunit
RA	834,674	A→G	9.9%	Q1044Q (CAA→CAG)	narG →	nitrate reductase 1, alpha subunit
RA	834,677	G→C	11.7%	L1045L (CTG→CTC)	narG →	nitrate reductase 1, alpha subunit
RA	834,689	C→T	10.0%	H1049H (CAC→CAT)	narG →	nitrate reductase 1, alpha subunit
RA	834,691	A→C	9.4%	Q1050P (CAG→CCG)	narG →	nitrate reductase 1, alpha subunit
RA	834,703	A→C	6.0%	D1054A (GAT→GCT)	narG →	nitrate reductase 1, alpha subunit
RA	834,707	C→T	5.7%	F1055F (TTC→TTT)	narG →	nitrate reductase 1, alpha subunit
RA	834,800	G→A	9.8%	A1086A (GCG→GCA)	narG →	nitrate reductase 1, alpha subunit
RA	834,803	C→T	9.5%	L1087L (CTC→CTT)	narG →	nitrate reductase 1, alpha subunit
RA	834,827	G→A	10.0%	K1095K (AAG→AAA)	narG →	nitrate reductase 1, alpha subunit
RA	834,900	T→A	5.3%	L1120M (TTG→ATG) ‡	narG →	nitrate reductase 1, alpha subunit
RA	834,902	G→C	5.4%	L1120F (TTG→TTC) ‡	narG →	nitrate reductase 1, alpha subunit
RA	834,909	G→A	5.7%	A1123T (GCC→ACC)	narG →	nitrate reductase 1, alpha subunit
RA	834,918	A→C	6.6%	K1126Q (AAA→CAA) ‡	narG →	nitrate reductase 1, alpha subunit
RA	834,919	A→G	6.5%	K1126R (AAA→AGA) ‡	narG →	nitrate reductase 1, alpha subunit
RA	834,923	T→A	6.8%	D1127E (GAT→GAA)	narG →	nitrate reductase 1, alpha subunit
RA	834,927	G→A	7.0%	G1129S (GGT→AGT) ‡	narG →	nitrate reductase 1, alpha subunit
RA	834,928	G→C	7.0%	G1129A (GGT→GCT) ‡	narG →	nitrate reductase 1, alpha subunit
RA	834,929	T→C	6.9%	G1129G (GGT→GGC) ‡	narG →	nitrate reductase 1, alpha subunit
RA	834,932	C→T	6.5%	I1130I (ATC→ATT)	narG →	nitrate reductase 1, alpha subunit
RA	834,934	C→T	7.4%	A1131V (GCC→GTC)	narG →	nitrate reductase 1, alpha subunit
RA	835,178	T→C	6.2%	Y1212Y (TAT→TAC)	narG →	nitrate reductase 1, alpha subunit
RA	835,187	A→C	6.9%	V1215V (GTA→GTC)	narG →	nitrate reductase 1, alpha subunit
RA	835,190	T→A	7.1%	G1216G (GGT→GGA)	narG →	nitrate reductase 1, alpha subunit
RA	835,193	T→G	6.8%	S1217S (TCT→TCG)	narG →	nitrate reductase 1, alpha subunit
RA	835,208	T→C	5.9%	F1222F (TTT→TTC)	narG →	nitrate reductase 1, alpha subunit
RA	835,209	G→A	5.7%	V1223I (GTT→ATT) ‡	narG →	nitrate reductase 1, alpha subunit
RA	835,211	T→C	5.7%	V1223V (GTT→GTC) ‡	narG →	nitrate reductase 1, alpha subunit
RA	835,212	G→A	5.7%	V1224I (GTA→ATA) ‡	narG →	nitrate reductase 1, alpha subunit
RA	835,214	A→G	5.5%	V1224V (GTA→GTG) ‡	narG →	nitrate reductase 1, alpha subunit
RA	835,215	G→A	5.5%	V1225M (GTG→ATG) ‡	narG →	nitrate reductase 1, alpha subunit
RA	835,217	G→C	5.5%	V1225V (GTG→GTC) ‡	narG →	nitrate reductase 1, alpha subunit
RA	835,220	T→C	5.5%	R1226R (CGT→CGC)	narG →	nitrate reductase 1, alpha subunit
RA	835,275	Δ1 bp	7.6%	coding (3733/3744 nt)	narG →	nitrate reductase 1, alpha subunit
RA	835,278:1	+A	7.1%	coding (3736/3744 nt)	narG →	nitrate reductase 1, alpha subunit
RA	835,279	T→A	7.1%	V1246E (GTA→GAA)	narG →	nitrate reductase 1, alpha subunit
RA	835,291	T→C	9.2%	I3I (ATT→ATC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,315	G→T	10.9%	L11L (CTG→CTT)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,318	T→C	9.1%	N12N (AAT→AAC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,324	T→C	9.7%	D14D (GAT→GAC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,327	G→A	10.0%	K15K (AAG→AAA)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,330	C→T	10.0%	C16C (TGC→TGT)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,342	C→T	12.6%	H20H (CAC→CAT)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,351	A→G	14.3%	S23S (TCA→TCG)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,354	T→G	13.7%	V24V (GTT→GTG)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,376	A→G	11.4%	S32G (AGC→GGC) ‡	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,378	C→G	11.6%	S32R (AGC→AGG) ‡	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,381	T→C	11.4%	R33R (CGT→CGC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,388	G→A	10.8%	V36M (GTG→ATG)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,393	A→G	12.5%	E37E (GAA→GAG)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,396	T→C	12.5%	Y38Y (TAT→TAC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,399	G→A	11.3%	A39A (GCG→GCA)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,792	C→G	8.1%	S170R (AGC→AGG)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,846	G→C	12.6%	L188L (CTG→CTC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,848:1	+T	11.3%	coding (566/1539 nt)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,852	G→A	10.7%	P190P (CCG→CCA)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,855	Δ1 bp	10.0%	coding (573/1539 nt)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,858	T→C	12.7%	C192C (TGT→TGC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,873	G→A	10.4%	P197P (CCG→CCA)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,891	G→A	7.6%	K203K (AAG→AAA)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,894	T→C	6.3%	R204R (CGT→CGC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,903	T→C	7.5%	D207D (GAT→GAC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,909	C→T	5.1%	I209I (ATC→ATT)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,912	C→G	5.1%	V210V (GTC→GTG)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,918	C→T	5.5%	I212I (ATC→ATT)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,921	C→T	6.0%	D213D (GAC→GAT)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,993	G→A	10.0%	K237K (AAG→AAA)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	835,999	T→C	8.5%	G239G (GGT→GGC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,005	T→A	7.3%	S241S (TCT→TCA)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,008	G→A	8.6%	E242E (GAG→GAA)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,011	G→A	9.4%	K243K (AAG→AAA)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,314	T→C	14.6%	H344H (CAT→CAC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,317	G→T	15.3%	P345P (CCG→CCT)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,323	T→C	13.9%	Y347Y (TAT→TAC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,329	A→C	16.2%	T349T (ACA→ACC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,350	G→T	11.1%	V356V (GTG→GTT)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,353	G→T	11.1%	P357P (CCG→CCT)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,356	T→G	11.4%	P358P (CCT→CCG)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,443	A→G	6.4%	V387V (GTA→GTG)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,446	G→A	6.4%	Q388Q (CAG→CAA)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	836,452	G→C	6.2%	L390L (CTG→CTC)	narH →	nitrate reductase 1, beta (Fe‑S) subunit
RA	837,036	A→G	10.5%	S73S (TCA→TCG)	narJ →	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1
RA	837,040	T→C	10.0%	L75L (TTG→CTG)	narJ →	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1
RA	837,048	T→C	9.7%	F77F (TTT→TTC)	narJ →	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1
RA	837,060	C→T	9.3%	H81H (CAC→CAT)	narJ →	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1
RA	837,062	G→C	9.3%	G82A (GGC→GCC)	narJ →	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1
RA	837,066	A→G	9.5%	E83E (GAA→GAG)	narJ →	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1
RA	837,075	C→T	10.5%	D86D (GAC→GAT)	narJ →	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1
RA	837,087	G→A	9.8%	A90A (GCG→GCA)	narJ →	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1
RA	837,716	T→C	8.7%	F63F (TTT→TTC)	narI →	nitrate reductase 1, gamma (cytochrome b(NR)) subunit
RA	837,722	T→G	8.3%	G65G (GGT→GGG)	narI →	nitrate reductase 1, gamma (cytochrome b(NR)) subunit
RA	837,728	C→G	7.8%	F67L (TTC→TTG)	narI →	nitrate reductase 1, gamma (cytochrome b(NR)) subunit
RA	837,734	T→C	7.4%	G69G (GGT→GGC)	narI →	nitrate reductase 1, gamma (cytochrome b(NR)) subunit
RA	837,738	C→T	7.4%	L71L (CTG→TTG) ‡	narI →	nitrate reductase 1, gamma (cytochrome b(NR)) subunit
RA	837,740	G→A	8.1%	L71L (CTG→CTA) ‡	narI →	nitrate reductase 1, gamma (cytochrome b(NR)) subunit
RA	854,861	C→T	10.2%	A43A (GCG→GCA)	yciG ←	hypothetical protein
RA	854,876	T→C	11.5%	Q38Q (CAA→CAG)	yciG ←	hypothetical protein
RA	854,882	A→G	11.5%	D36D (GAT→GAC)	yciG ←	hypothetical protein
RA	854,888	T→C	9.4%	K34K (AAA→AAG)	yciG ←	hypothetical protein
RA	854,891	A→G	9.6%	F33F (TTT→TTC)	yciG ←	hypothetical protein
RA	873,015	C→T	30.3%	I69I (ATC→ATT)	cysB →	DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding
RA	875,783	C→T	6.3%	S333S (AGC→AGT)	acnA →	aconitate hydratase 1
RA	876,300	G→A	27.9%	G506S (GGT→AGT)	acnA →	aconitate hydratase 1
RA	909,663	A→G	46.6%	I614V (ATC→GTC)	ycjT →	predicted hydrolase
RA	909,913:1	+T	35.4%	coding (2090/2268 nt)	ycjT →	predicted hydrolase
RA	910,923	G→A	19.1%	E55K (GAG→AAG) ‡	ycjV →	predicted sugar transporter subunit
RA	910,924	A→C	19.1%	E55A (GAG→GCG) ‡	ycjV →	predicted sugar transporter subunit
RA	910,930	G→C	16.3%	S57T (AGC→ACC)	ycjV →	predicted sugar transporter subunit
RA	910,932	G→A	16.4%	G58S (GGC→AGC)	ycjV →	predicted sugar transporter subunit
RA	910,940	T→C	12.1%	D60D (GAT→GAC)	ycjV →	predicted sugar transporter subunit
RA	910,946	G→C	8.2%	L62F (TTG→TTC)	ycjV →	predicted sugar transporter subunit
RA	962,083	A→G	14.9%	Y214H (TAT→CAT)	yddB ←	predicted porin protein
RA	965,844	A→T	15.5%	V17D (GTT→GAT)	ydeM ←	conserved hypothetical protein
RA	967,816	G→T	15.2%	A190D (GCT→GAT)	ydeV ←	predicted sugar kinase
RA	974,990	A→T	33.9%	intergenic (+742/+250)	lsrB → / ← ydeH	AI2 transporter/conserved hypothetical protein
RA	975,257:1	+A	17.0%	coding (358/375 nt)	ydeH ←	conserved hypothetical protein
RA	980,208	A→G	18.1%	Y33H (TAT→CAT)	cspI ←	cold shock protein
RA	980,245	G→A	7.5%	F20F (TTC→TTT)	cspI ←	cold shock protein
RA	980,248	A→G	6.9%	G19G (GGT→GGC)	cspI ←	cold shock protein
RA	980,260	T→A	6.3%	E15D (GAA→GAT)	cspI ←	cold shock protein
RA	980,265	G→C	11.7%	P14A (CCT→GCT)	cspI ←	cold shock protein
RA	980,278	C→T	9.5%	V9V (GTG→GTA)	cspI ←	cold shock protein
RA	980,296	G→A	5.9%	N3N (AAC→AAT)	cspI ←	cold shock protein
RA	982,629	C→T	9.3%	T25T (ACC→ACT)	ydfA →	hypothetical protein
RA	982,632	A→C	8.5%	A26A (GCA→GCC)	ydfA →	hypothetical protein
RA	983,505	T→C	7.5%	intergenic (+417/‑151)	ydfC → / → dicB	hypothetical protein/cell division inhibition protein
RA	983,519	G→A	5.0%	intergenic (+431/‑137)	ydfC → / → dicB	hypothetical protein/cell division inhibition protein
RA	1,014,482	A→G	8.5%	D529D (GAT→GAC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,488	C→G	8.3%	V527V (GTG→GTC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,491	A→C	8.3%	L526L (CTT→CTG)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,644	T→A	13.3%	K475N (AAA→AAT) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,646	T→G	13.3%	K475Q (AAA→CAA) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,650	G→C	12.5%	A473A (GCC→GCG)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,653	A→G	12.1%	D472D (GAT→GAC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,818	A→G	6.9%	H417H (CAT→CAC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,839	C→A	8.1%	L410L (CTG→CTT)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,842	C→T	8.0%	G409G (GGG→GGA) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,843	C→T	8.0%	G409E (GGG→GAG) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,847	C→T	7.4%	E408K (GAA→AAA)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,852	T→G	7.1%	N406T (AAC→ACC) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,853	T→C	7.1%	N406D (AAC→GAC) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,854	A→G	7.6%	D405D (GAT→GAC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,857	C→A	7.5%	M404I (ATG→ATT)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,861	C→A	7.5%	R403L (CGG→CTG)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,949	A→G	7.7%	L374L (TTG→CTG)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,953	T→G	7.8%	A372A (GCA→GCC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,974	A→G	13.1%	R365R (CGT→CGC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,989	G→T	11.9%	R360R (CGC→CGA) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,990	C→T	12.0%	R360H (CGC→CAC) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,014,991	G→T	12.0%	R360S (CGC→AGC) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,007	T→A	11.6%	G354G (GGA→GGT)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,010	C→G	11.3%	A353A (GCG→GCC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,013	T→C	9.3%	K352K (AAA→AAG) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,015	T→G	9.3%	K352Q (AAA→CAA) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,046	A→G	5.5%	N341N (AAT→AAC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,049	A→G	6.0%	H340H (CAT→CAC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,073	C→A	9.8%	G332G (GGG→GGT)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,076	C→T	9.8%	Q331Q (CAG→CAA) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,078	G→C	9.8%	Q331E (CAG→GAG) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,079	A→G	9.8%	R330R (CGT→CGC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,088	C→T	14.7%	K327K (AAG→AAA)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,097	G→A	16.2%	I324I (ATC→ATT)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,100	A→G	16.7%	N323N (AAT→AAC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,112	A→G	21.3%	S319S (TCT→TCC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,130	A→G	24.2%	G313G (GGT→GGC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,163	G→A	27.5%	R302R (CGC→CGT)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,166	A→G	26.4%	I301I (ATT→ATC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,169	C→A	22.9%	V300V (GTG→GTT)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,175	G→A	23.2%	I298I (ATC→ATT)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,184	A→C	17.4%	A295A (GCT→GCG)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,199	A→G	15.1%	G290G (GGT→GGC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,211	A→G	10.5%	G286G (GGT→GGC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,214	C→A	11.7%	L285L (CTG→CTT)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,424	C→T	6.6%	K215K (AAG→AAA)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,430	A→G	7.8%	V213V (GTT→GTC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,433	C→G	6.0%	L212L (CTG→CTC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,437	T→A	5.7%	Y211F (TAC→TTC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,439	A→G	6.0%	N210N (AAT→AAC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,451	C→G	10.4%	G206G (GGG→GGC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,454	C→G	10.3%	P205P (CCG→CCC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,457	C→A	10.6%	T204T (ACG→ACT)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,463	T→C	9.2%	L202L (TTA→TTG) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,465	A→G	10.7%	L202L (TTA→CTA) ‡	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,466	C→G	8.5%	A201A (GCG→GCC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,625	T→C	6.4%	Q148Q (CAA→CAG)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,628	C→T	6.7%	S147S (TCG→TCA)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,631	G→A	6.8%	Y146Y (TAC→TAT)	fumA ←	aerobic Class I fumarate hydratase
RA	1,015,640	A→G	8.9%	N143N (AAT→AAC)	fumA ←	aerobic Class I fumarate hydratase
RA	1,036,505	G→A	100%	A632A (GCG→GCA)	rsxC →	fused predicted 4Fe‑4S ferredoxin‑type protein
RA	1,069,493	G→A	17.9%	M130I (ATG→ATA)	cfa →	cyclopropane fatty acyl phospholipid synthase
RA	1,069,791	G→A	7.7%	D230N (GAT→AAT)	cfa →	cyclopropane fatty acyl phospholipid synthase
RA	1,096,686	T→C	8.4%	intergenic (‑310/‑79)	ydiJ ← / → ydiK	predicted FAD‑linked oxidoreductase/predicted inner membrane protein
RA	1,109,347	C→T	20.3%	L88F (CTC→TTC)	ydiS →	predicted oxidoreductase, FAD/NAD(P)‑binding domain
RA	1,191,560	T→C	18.2%	*116W (TGA→TGG)	rnd ←	ribonuclease D
RA	1,202,128	G→C	9.2%	T427T (ACG→ACC)	sdaA →	L‑serine deaminase I
RA	1,202,140	C→A	7.9%	T431T (ACC→ACA)	sdaA →	L‑serine deaminase I
RA	1,202,146	G→A	7.4%	K433K (AAG→AAA)	sdaA →	L‑serine deaminase I
RA	1,202,149	C→T	6.5%	D434D (GAC→GAT)	sdaA →	L‑serine deaminase I
RA	1,211,229	G→A	6.5%	F41F (TTC→TTT)	cspC ←	stress protein, member of the CspA‑family
RA	1,211,232	G→A	8.9%	G40G (GGC→GGT)	cspC ←	stress protein, member of the CspA‑family
RA	1,211,239	C→G	8.9%	G38A (GGT→GCT) ‡	cspC ←	stress protein, member of the CspA‑family
RA	1,211,240	C→T	10.8%	G38S (GGT→AGT) ‡	cspC ←	stress protein, member of the CspA‑family
RA	1,211,247	A→T	8.3%	A35A (GCT→GCA)	cspC ←	stress protein, member of the CspA‑family
RA	1,211,250	G→A	9.4%	S34S (TCC→TCT)	cspC ←	stress protein, member of the CspA‑family
RA	1,211,280	A→G	9.6%	D24D (GAT→GAC)	cspC ←	stress protein, member of the CspA‑family
RA	1,211,283	A→T	9.0%	A23A (GCT→GCA) ‡	cspC ←	stress protein, member of the CspA‑family
RA	1,211,284	G→T	13.7%	A23D (GCT→GAT) ‡	cspC ←	stress protein, member of the CspA‑family
RA	1,216,822	C→A	5.6%	P637P (CCG→CCT)	prc ←	carboxy‑terminal protease for penicillin‑binding protein 3
RA	1,250,792	A→C	10.7%	L167L (CTT→CTG)	ruvC ←	component of RuvABC resolvasome, endonuclease
RA	1,256,681	G→A	7.1%	E22K (GAA→AAA)	yecO →	predicted methyltransferase
RA	1,259,379	C→G	7.6%	T515T (ACG→ACC)	torZ ←	trimethylamine N‑oxide reductase system III, catalytic subunit
RA	1,259,799	T→C	10.2%	L375L (TTA→TTG)	torZ ←	trimethylamine N‑oxide reductase system III, catalytic subunit
RA	1,259,805	C→T	7.3%	A373A (GCG→GCA)	torZ ←	trimethylamine N‑oxide reductase system III, catalytic subunit
RA	1,259,808	C→T	7.7%	A372A (GCG→GCA)	torZ ←	trimethylamine N‑oxide reductase system III, catalytic subunit
RA	1,259,817	C→G	10.6%	V369V (GTG→GTC)	torZ ←	trimethylamine N‑oxide reductase system III, catalytic subunit
RA	1,259,820	C→G	7.6%	L368L (CTG→CTC) ‡	torZ ←	trimethylamine N‑oxide reductase system III, catalytic subunit
RA	1,259,822	G→T	7.4%	L368M (CTG→ATG) ‡	torZ ←	trimethylamine N‑oxide reductase system III, catalytic subunit
RA	1,259,838	T→C	9.4%	E362E (GAA→GAG)	torZ ←	trimethylamine N‑oxide reductase system III, catalytic subunit
RA	1,259,845	T→A	10.7%	Y360F (TAT→TTT)	torZ ←	trimethylamine N‑oxide reductase system III, catalytic subunit
RA	1,259,847	T→C	10.7%	Q359Q (CAA→CAG)	torZ ←	trimethylamine N‑oxide reductase system III, catalytic subunit
RA	1,259,850	C→T	10.0%	Q358Q (CAG→CAA)	torZ ←	trimethylamine N‑oxide reductase system III, catalytic subunit
RA	1,274,778	G→A	32.8%	S30N (AGC→AAC)	yodA →	conserved metal‑binding protein
RA	1,279,173	G→A	9.1%	V318I (GTA→ATA) ‡	yeeJ →	adhesin
RA	1,279,175	A→T	9.5%	V318V (GTA→GTT) ‡	yeeJ →	adhesin
RA	1,279,178	C→T	9.7%	R319R (CGC→CGT)	yeeJ →	adhesin
RA	1,279,181	A→T	8.3%	A320A (GCA→GCT)	yeeJ →	adhesin
RA	1,279,184	A→G	8.1%	E321E (GAA→GAG)	yeeJ →	adhesin
RA	1,279,185	A→G	8.2%	S322G (AGC→GGC)	yeeJ →	adhesin
RA	1,279,189	G→A	8.3%	W323* (TGG→TAG)	yeeJ →	adhesin
RA	1,279,191	C→T	7.8%	L324L (CTA→TTA)	yeeJ →	adhesin
RA	1,289,208	C→T	17.8%	G279G (GGC→GGT)	amn →	AMP nucleosidase
RA	1,309,899	G→A	19.0%	R31R (CGC→CGT)	yefM ←	antitoxin of the YoeB‑YefM toxin‑antitoxin system
RA	1,314,255	T→C	18.4%	H170H (CAT→CAC)	hisB →	fused histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase
RA	1,321,783	G→A	12.7%	intergenic (‑237/+257)	gnd ← / ← galF	gluconate‑6‑phosphate dehydrogenase, decarboxylating/predicted subunit with GalU
RA	1,334,615	G→A	53.1%	L72L (CTG→TTG)	nudD ←	GDP‑mannose mannosyl hydrolase
RA	1,358,189	G→T	10.7%	S311R (AGC→AGA)	yehB ←	predicted outer membrane protein
RA	1,368,852	T→C	40.7%	D188G (GAT→GGT)	dusC ←	tRNA‑dihydrouridine synthase C
RA	1,390,615	A→G	18.7%	Q249Q (CAA→CAG)	nfo →	endonuclease IV with intrinsic 3'‑5' exonuclease activity
RA	1,391,735	T→C	24.7%	K370E (AAA→GAA)	fruA ←	fused fructose‑specific PTS enzyme IIB'BC components
RA	1,395,675	T→C	7.0%	F127F (TTT→TTC)	setB →	lactose/glucose efflux system
RA	1,395,681	T→C	6.8%	L129L (CTT→CTC)	setB →	lactose/glucose efflux system
RA	1,395,693	T→C	5.3%	H133H (CAT→CAC)	setB →	lactose/glucose efflux system
RA	1,399,007	C→T	5.5%	A444V (GCC→GTC)	yeiQ →	predicted dehydrogenase, NAD‑dependent
RA	1,416,539	T→C	17.7%	V244V (GTT→GTC)	yejM →	predicted hydrolase, inner membrane
RA	1,419,579	G→A	15.6%	R128R (CGC→CGT)	ccmH ←	heme lyase, CcmH subunit
RA	1,439,294	G→A	5.7%	D336D (GAC→GAT)	ompC ←	outer membrane porin protein C
RA	1,439,300	G→A	6.2%	Y334Y (TAC→TAT)	ompC ←	outer membrane porin protein C
RA	1,439,318	G→A	6.7%	N328N (AAC→AAT)	ompC ←	outer membrane porin protein C
RA	1,439,324	G→A	6.7%	Y326Y (TAC→TAT)	ompC ←	outer membrane porin protein C
RA	1,439,330	G→A	6.7%	T324T (ACC→ACT)	ompC ←	outer membrane porin protein C
RA	1,439,333	A→C	18.2%	A323A (GCT→GCG)	ompC ←	outer membrane porin protein C
RA	1,439,336	A→G	5.5%	G322G (GGT→GGC)	ompC ←	outer membrane porin protein C
RA	1,439,444	G→A	8.7%	Y286Y (TAC→TAT)	ompC ←	outer membrane porin protein C
RA	1,439,457	G→A	6.4%	A282V (GCT→GTT)	ompC ←	outer membrane porin protein C
RA	1,439,462	G→A	6.3%	F280F (TTC→TTT)	ompC ←	outer membrane porin protein C
RA	1,439,468	C→T	6.4%	Q278Q (CAG→CAA)	ompC ←	outer membrane porin protein C
RA	1,439,471	T→G	6.1%	A277A (GCA→GCC)	ompC ←	outer membrane porin protein C
RA	1,439,792	G→A	6.7%	Y170Y (TAC→TAT)	ompC ←	outer membrane porin protein C
RA	1,439,798	A→C	10.0%	V168V (GTT→GTG)	ompC ←	outer membrane porin protein C
RA	1,439,804	A→G	5.3%	F166F (TTT→TTC)	ompC ←	outer membrane porin protein C
RA	1,439,813	G→A	6.0%	G163G (GGC→GGT)	ompC ←	outer membrane porin protein C
RA	1,439,816	G→A	9.5%	D162D (GAC→GAT) ‡	ompC ←	outer membrane porin protein C
RA	1,439,818	C→T	6.1%	D162N (GAC→AAC) ‡	ompC ←	outer membrane porin protein C
RA	1,439,819	A→T	6.1%	V161V (GTT→GTA)	ompC ←	outer membrane porin protein C
RA	1,439,834	G→A	6.0%	D156D (GAC→GAT)	ompC ←	outer membrane porin protein C
RA	1,439,840	G→A	6.4%	N154N (AAC→AAT)	ompC ←	outer membrane porin protein C
RA	1,440,224	G→A	10.0%	N26N (AAC→AAT)	ompC ←	outer membrane porin protein C
RA	1,440,227	G→A	10.2%	Y25Y (TAC→TAT)	ompC ←	outer membrane porin protein C
RA	1,440,236	A→G	7.6%	A22A (GCT→GCC)	ompC ←	outer membrane porin protein C
RA	1,440,239	A→T	8.0%	A21A (GCT→GCA)	ompC ←	outer membrane porin protein C
RA	1,440,242	G→A	8.0%	N20N (AAC→AAT) ‡	ompC ←	outer membrane porin protein C
RA	1,440,244	T→G	6.9%	N20H (AAC→CAC) ‡	ompC ←	outer membrane porin protein C
RA	1,456,196	G→A	30.0%	A385V (GCG→GTG)	yfaQ ←	hypothetical protein
RA	1,467,905:1	+T	21.2%	intergenic (+64/+64)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase and 2‑octaprenyl‑6‑hydroxy phenol methylase/adhesin
RA	1,467,905:2	+C	21.2%	intergenic (+64/+64)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase and 2‑octaprenyl‑6‑hydroxy phenol methylase/adhesin
RA	1,467,905:3	+C	21.2%	intergenic (+64/+64)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase and 2‑octaprenyl‑6‑hydroxy phenol methylase/adhesin
RA	1,467,905:4	+C	21.2%	intergenic (+64/+64)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase and 2‑octaprenyl‑6‑hydroxy phenol methylase/adhesin
RA	1,467,908	T→A	18.8%	intergenic (+67/+61)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase and 2‑octaprenyl‑6‑hydroxy phenol methylase/adhesin
RA	1,467,910:2	+T	20.6%	intergenic (+69/+59)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase and 2‑octaprenyl‑6‑hydroxy phenol methylase/adhesin
RA	1,469,857	C→T	6.3%	G622D (GGC→GAC)	yfaL ←	adhesin
RA	1,474,821	T→G	20.0%	intergenic (+119/‑115)	nrdA → / → nrdB	ribonucleoside diphosphate reductase 1, alpha subunit/ribonucleoside diphosphate reductase 1, beta subunit, ferritin‑like
RA	1,474,827	G→T	16.0%	intergenic (+125/‑109)	nrdA → / → nrdB	ribonucleoside diphosphate reductase 1, alpha subunit/ribonucleoside diphosphate reductase 1, beta subunit, ferritin‑like
RA	1,474,830	T→A	15.4%	intergenic (+128/‑106)	nrdA → / → nrdB	ribonucleoside diphosphate reductase 1, alpha subunit/ribonucleoside diphosphate reductase 1, beta subunit, ferritin‑like
RA	1,474,835	C→T	14.3%	intergenic (+133/‑101)	nrdA → / → nrdB	ribonucleoside diphosphate reductase 1, alpha subunit/ribonucleoside diphosphate reductase 1, beta subunit, ferritin‑like
RA	1,484,894	T→C	22.2%	M316V (ATG→GTG)	menF ←	isochorismate synthase 2
RA	1,486,279	T→C	16.7%	T345A (ACA→GCA)	nuoN ←	NADH:ubiquinone oxidoreductase, membrane subunit N
RA	1,502,353	G→A	22.2%	S92L (TCA→TTA)	lrhA ←	DNA‑binding transcriptional repressor
RA	1,502,847	A→T	30.3%	intergenic (‑220/‑700)	lrhA ← / → yfbQ	DNA‑binding transcriptional repressor/predicted aminotransferase
RA	1,513,018	T→C	14.0%	intergenic (+141/+291)	pta → / ← ubiX	phosphate acetyltransferase/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
RA	1,530,607	G→A	12.5%	T69I (ACT→ATT)	yfcA ←	conserved inner membrane protein
RA	1,534,296	G→A	10.4%	A147T (GCA→ACA)	yfcN →	conserved hypothetical protein
RA	1,557,415	A→G	25.5%	*128Q (TAG→CAG)	emrY ←	predicted multidrug efflux system
RA	1,564,887	C→T	14.6%	intergenic (‑99/+193)	yfdE ← / ← glk	predicted CoA‑transferase, NAD(P)‑binding/glucokinase
RA	1,564,912	G→A	22.9%	intergenic (‑124/+168)	yfdE ← / ← glk	predicted CoA‑transferase, NAD(P)‑binding/glucokinase
RA	1,568,107	C→T	19.6%	G407R (GGG→AGG)	mntH ←	manganese/divalent cation transporter
RA	1,582,992	T→C	21.5%	S81S (TCA→TCG)	ligA ←	DNA ligase, NAD(+)‑dependent
RA	1,614,452	C→T	7.4%	intergenic (‑77/+140)	eutH ← / ← eutG	predicted inner membrane protein/predicted alcohol dehydrogenase in ethanolamine utilization
RA	1,614,453	G→C	6.9%	intergenic (‑78/+139)	eutH ← / ← eutG	predicted inner membrane protein/predicted alcohol dehydrogenase in ethanolamine utilization
RA	1,614,454	T→C	6.8%	intergenic (‑79/+138)	eutH ← / ← eutG	predicted inner membrane protein/predicted alcohol dehydrogenase in ethanolamine utilization
RA	1,614,455	A→T	6.9%	intergenic (‑80/+137)	eutH ← / ← eutG	predicted inner membrane protein/predicted alcohol dehydrogenase in ethanolamine utilization
RA	1,614,459	T→C	10.7%	intergenic (‑84/+133)	eutH ← / ← eutG	predicted inner membrane protein/predicted alcohol dehydrogenase in ethanolamine utilization
RA	1,614,466	G→A	10.7%	intergenic (‑91/+126)	eutH ← / ← eutG	predicted inner membrane protein/predicted alcohol dehydrogenase in ethanolamine utilization
RA	1,614,480	C→T	11.5%	intergenic (‑105/+112)	eutH ← / ← eutG	predicted inner membrane protein/predicted alcohol dehydrogenase in ethanolamine utilization
RA	1,614,492	T→C	12.5%	intergenic (‑117/+100)	eutH ← / ← eutG	predicted inner membrane protein/predicted alcohol dehydrogenase in ethanolamine utilization
RA	1,634,087	C→T	14.6%	L75L (CTC→CTT)	acrD →	aminoglycoside/multidrug efflux system
RA	1,657,320	A→G	9.8%	S531G (AGT→GGT)	ppk →	polyphosphate kinase, component of RNA degradosome
RA	1,670,644	A→G	20.0%	I232T (ATT→ACT)	yfgL ←	protein assembly complex, lipoprotein component
RA	1,672,724	C→T	7.3%	A180T (GCG→ACG)	hisS ←	histidyl tRNA synthetase
RA	1,695,634	G→A	11.1%	Q126* (CAG→TAG)	yfhQ ←	predicted methyltransferase
RA	1,695,852	G→A	38.9%	A53V (GCC→GTC)	yfhQ ←	predicted methyltransferase
RA	1,716,832	A→C	6.7%	intergenic (+90/+108)	yphH → / ← glyA	predicted DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA	1,716,833	C→A	13.3%	intergenic (+91/+107)	yphH → / ← glyA	predicted DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA	1,716,835	G→A	7.2%	intergenic (+93/+105)	yphH → / ← glyA	predicted DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA	1,728,678	T→C	47.9%	F18F (TTT→TTC)	yfhD →	predicted transglycosylase
RA	1,740,334	C→T	6.7%	V52I (GTC→ATC)	rseC ←	RseC protein involved in reduction of the SoxR iron‑sulfur cluster
RA	1,746,998	G→A	8.0%	intergenic (+82/+127)	srmB → / ← yfiE	ATP‑dependent RNA helicase/predicted DNA‑binding transcriptional regulator
RA	1,747,003	T→C	8.0%	intergenic (+87/+122)	srmB → / ← yfiE	ATP‑dependent RNA helicase/predicted DNA‑binding transcriptional regulator
RA	1,747,012	A→G	7.6%	intergenic (+96/+113)	srmB → / ← yfiE	ATP‑dependent RNA helicase/predicted DNA‑binding transcriptional regulator
RA	1,747,028	A→C	5.7%	intergenic (+112/+97)	srmB → / ← yfiE	ATP‑dependent RNA helicase/predicted DNA‑binding transcriptional regulator
RA	1,747,030	C→T	5.6%	intergenic (+114/+95)	srmB → / ← yfiE	ATP‑dependent RNA helicase/predicted DNA‑binding transcriptional regulator
RA	1,763,556	T→C	24.8%	noncoding (288/1542 nt)	rrsG ←	16S ribosomal RNA
RA	1,763,636	A→G	18.8%	noncoding (208/1542 nt)	rrsG ←	16S ribosomal RNA
RA	1,789,035	T→C	25.7%	S58P (TCC→CCC)	ygaF →	hypothetical protein
RA	1,789,192	T→C	15.7%	V110A (GTG→GCG)	ygaF →	hypothetical protein
RA	1,826,256	G→A	32.3%	A23V (GCG→GTG)	hydN ←	formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	1,826,261	C→A	9.4%	A21A (GCG→GCT)	hydN ←	formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	1,826,264	T→C	9.7%	V20V (GTA→GTG)	hydN ←	formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	1,826,285	A→G	10.6%	I13I (ATT→ATC)	hydN ←	formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	1,826,294	A→C	6.0%	S10R (AGT→AGG) ‡	hydN ←	formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	1,826,295	C→G	6.0%	S10T (AGT→ACT) ‡	hydN ←	formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	1,826,300	G→A	6.1%	D8D (GAC→GAT)	hydN ←	formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	1,833,578	T→C	27.5%	L107L (CTT→CTC)	ygbL →	predicted class II aldolase
RA	1,837,432	G→A	6.5%	N329N (AAC→AAT)	nlpD ←	predicted outer membrane lipoprotein
RA	1,837,444	G→A	10.7%	A325A (GCC→GCT)	nlpD ←	predicted outer membrane lipoprotein
RA	1,837,447	A→C	10.5%	S324R (AGT→AGG) ‡	nlpD ←	predicted outer membrane lipoprotein
RA	1,837,448	C→G	10.2%	S324T (AGT→ACT) ‡	nlpD ←	predicted outer membrane lipoprotein
RA	1,837,450	C→A	10.9%	L323L (CTG→CTT) ‡	nlpD ←	predicted outer membrane lipoprotein
RA	1,837,452	G→T	12.3%	L323M (CTG→ATG) ‡	nlpD ←	predicted outer membrane lipoprotein
RA	1,837,459	A→T	11.3%	D320E (GAT→GAA)	nlpD ←	predicted outer membrane lipoprotein
RA	1,837,463	T→C	10.6%	N319S (AAT→AGT)	nlpD ←	predicted outer membrane lipoprotein
RA	1,837,465	A→G	9.5%	H318H (CAT→CAC)	nlpD ←	predicted outer membrane lipoprotein
RA	1,837,471	G→A	11.7%	I316I (ATC→ATT)	nlpD ←	predicted outer membrane lipoprotein
RA	1,837,474	G→C	11.7%	I315M (ATC→ATG)	nlpD ←	predicted outer membrane lipoprotein
RA	1,837,477	A→G	10.0%	I314I (ATT→ATC)	nlpD ←	predicted outer membrane lipoprotein
RA	1,864,336	G→A	12.2%	intergenic (+83/+65)	ygcP → / ← ygcQ	predicted anti‑terminator regulatory protein/predicted flavoprotein
RA	1,864,337	A→C	7.6%	intergenic (+84/+64)	ygcP → / ← ygcQ	predicted anti‑terminator regulatory protein/predicted flavoprotein
RA	1,870,726	T→G	6.3%	L218W (TTG→TGG)	yqcE →	predicted transporter
RA	1,889,046	G→A	14.0%	P395S (CCC→TCC)	gudX ←	predicted glucarate dehydratase
RA	1,892,019:1	+GC	100%	intergenic (‑437/+54)	gudP ← / ← ygdL	predicted D‑glucarate transporter/conserved hypothetical protein
RA	1,919,248	G→A	7.4%	Q205Q (CAG→CAA)	tas →	predicted oxidoreductase, NADP(H)‑dependent aldo‑keto reductase
RA	1,924,650	C→T	30.0%	H339Y (CAT→TAT)	galR →	DNA‑binding transcriptional repressor
RA	1,932,763	G→A	23.3%	intergenic (‑134/+162)	yqeF ← / ← lysS	predicted acyltransferase/lysine tRNA synthetase, constitutive
RA	1,932,853	C→T	20.9%	intergenic (‑224/+72)	yqeF ← / ← lysS	predicted acyltransferase/lysine tRNA synthetase, constitutive
RA	1,933,015	T→A	11.7%	G476G (GGA→GGT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,024	T→A	8.9%	A473A (GCA→GCT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,027	T→G	8.9%	T472T (ACA→ACC)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,030	C→T	6.8%	P471P (CCG→CCA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,036	T→C	6.4%	L469L (TTA→TTG) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,038	A→G	5.3%	L469L (TTA→CTA) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,039	G→A	6.0%	G468G (GGC→GGT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,044	G→A	6.0%	H467Y (CAT→TAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,069	A→G	6.2%	D458D (GAT→GAC)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,072	G→A	6.1%	Y457Y (TAC→TAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,081	C→G	8.2%	A454A (GCG→GCC)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,099	G→A	8.3%	D448D (GAC→GAT) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,100	T→G	8.3%	D448A (GAC→GCC) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,105	C→A	6.9%	A446A (GCG→GCT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,108	G→A	6.9%	A445A (GCC→GCT) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,109	G→T	6.9%	A445D (GCC→GAC) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,110	C→T	7.0%	A445T (GCC→ACC) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,117	A→T	8.4%	D442E (GAT→GAA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,121	A→T	9.3%	L441Q (CTG→CAG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,126	G→A	9.9%	R439R (CGC→CGT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,131	G→C	7.9%	Q438E (CAA→GAA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,132	C→A	7.9%	A437A (GCG→GCT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,198	C→T	9.5%	E415E (GAG→GAA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,204	G→A	12.1%	R413R (CGC→CGT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,210	T→G	15.1%	T411T (ACA→ACC)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,228	G→A	18.6%	D405D (GAC→GAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,231	G→A	18.6%	N404N (AAC→AAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,237	A→G	18.3%	R402R (CGT→CGC)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,240	C→T	17.4%	A401A (GCG→GCA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,249	A→G	12.7%	S398S (TCT→TCC)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,252	A→C	10.1%	V397V (GTT→GTG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,276	G→A	9.7%	F389F (TTC→TTT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,282	C→T	10.1%	P387P (CCG→CCA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,312	T→A	7.4%	E377D (GAA→GAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,315	G→A	7.9%	F376F (TTC→TTT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,324	G→T	5.8%	T373T (ACC→ACA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,575	G→A	6.7%	L290L (CTG→TTG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,579	T→G	6.1%	K288N (AAA→AAC) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,581	T→G	6.1%	K288Q (AAA→CAA) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,588	T→C	9.2%	A285A (GCA→GCG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,591	G→A	9.2%	Y284Y (TAC→TAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,594	A→C	9.0%	A283A (GCT→GCG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,615	G→T	14.0%	T276T (ACC→ACA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,624	T→A	16.7%	P273P (CCA→CCT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,627	G→A	15.5%	N272N (AAC→AAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,633	A→G	16.3%	R270R (CGT→CGC)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,636	T→A	16.6%	V269V (GTA→GTT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,639	G→A	15.2%	S268S (TCC→TCT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,651	G→A	16.7%	N264N (AAC→AAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,681	A→C	18.2%	R254R (CGT→CGG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,684	C→T	16.7%	E253E (GAG→GAA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,687	G→A	17.6%	F252F (TTC→TTT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,690	G→A	18.8%	G251G (GGC→GGT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,693	A→G	20.3%	G250G (GGT→GGC)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,696	A→T	20.3%	V249V (GTT→GTA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,699	C→A	19.9%	V248V (GTG→GTT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,708	C→T	13.0%	K245K (AAG→AAA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,711	G→C	13.1%	L244L (CTC→CTG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,714	G→A	11.8%	Y243Y (TAC→TAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,720	T→C	11.7%	E241E (GAA→GAG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,738	G→A	10.9%	Y235Y (TAC→TAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,744	G→A	7.9%	D233D (GAC→GAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,747	G→T	8.0%	L232L (CTC→CTA) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,749	G→A	8.1%	L232F (CTC→TTC) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,756	C→A	6.6%	A229A (GCG→GCT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,759	G→A	6.6%	N228N (AAC→AAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,927	G→C	9.1%	L172L (CTC→CTG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,936	C→T	11.9%	Q169Q (CAG→CAA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,945	G→A	16.2%	R166R (CGC→CGT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,948	C→G	16.1%	A165A (GCG→GCC) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,949	G→A	16.2%	A165V (GCG→GTG) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,965	A→G	16.4%	L160L (TTG→CTG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,966	G→A	16.4%	G159G (GGC→GGT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,969	G→A	15.8%	H158H (CAC→CAT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,981	C→T	10.9%	P154P (CCG→CCA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,984	C→T	11.3%	L153L (CTG→CTA) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,986	G→A	11.3%	L153L (CTG→TTG) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,987	C→A	11.1%	P152P (CCG→CCT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,933,993	C→T	12.1%	L150L (CTG→CTA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,002	G→A	8.4%	T147T (ACC→ACT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,181	G→A	9.1%	L88L (CTG→TTG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,182	G→C	9.0%	T87T (ACC→ACG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,185	A→T	8.8%	V86V (GTT→GTA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,188	G→A	8.2%	F85F (TTC→TTT)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,191	A→G	8.9%	S84S (TCT→TCC)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,194	C→G	9.6%	A83A (GCG→GCC)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,200	A→C	7.5%	G81G (GGT→GGG)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,206	A→G	9.3%	I79I (ATT→ATC)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,224	G→T	10.5%	R73R (CGC→CGA)	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,236	G→C	7.8%	A69A (GCC→GCG) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,934,238	C→A	7.6%	A69S (GCC→TCC) ‡	lysS ←	lysine tRNA synthetase, constitutive
RA	1,948,347	C→A	16.2%	intergenic (‑38/+81)	gcvP ← / ← gcvH	glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex/glycine cleavage complex lipoylprotein
RA	1,954,083	A→G	43.6%	F9S (TTT→TCT)	pepP ←	proline aminopeptidase P II
RA	2,002,416	A→G	11.5%	intergenic (+63/+60)	yghU → / ← hybG	predicted S‑transferase/hydrogenase 2 accessory protein
RA	2,002,423	A→G	11.1%	intergenic (+70/+53)	yghU → / ← hybG	predicted S‑transferase/hydrogenase 2 accessory protein
RA	2,016,338	G→A	18.9%	D6N (GAT→AAT)	yghB →	conserved inner membrane protein
JC	2,018,222	Δ3 bp	10.0%	coding (108‑110/1164 nt)	yqhD →	alcohol dehydrogenase, NAD(P)‑dependent
RA	2,023,066	G→A	21.3%	P281S (CCA→TCA)	ygiQ ←	conserved hypothetical protein
RA	2,039,506	C→T	22.8%	V137I (GTT→ATT)	ribB ←	3,4 dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	2,040,713	C→T	22.9%	D40D (GAC→GAT)	yqiH →	predicted periplasmic pilin chaperone
RA	2,040,951	T→A	20.4%	*120K (TAA→AAA)	yqiH →	predicted periplasmic pilin chaperone
RA	2,041,438	G→A	43.1%	D32N (GAT→AAT)	yqiI →	conserved hypothetical protein
RA	2,042,482	C→T	15.8%	M57I (ATG→ATA)	glgS ←	predicted glycogen synthesis protein
RA	2,045,826	A→G	8.1%	intergenic (+588/+207)	yqiK → / ← rfaE	conserved hypothetical protein/fused heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase
RA	2,045,836	T→A	7.4%	intergenic (+598/+197)	yqiK → / ← rfaE	conserved hypothetical protein/fused heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase
RA	2,045,838	G→A	6.9%	intergenic (+600/+195)	yqiK → / ← rfaE	conserved hypothetical protein/fused heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase
RA	2,045,839	T→A	9.3%	intergenic (+601/+194)	yqiK → / ← rfaE	conserved hypothetical protein/fused heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase
RA	2,066,377	G→A	14.3%	noncoding (67/76 nt)	ileX →	tRNA‑Ile
RA	2,072,048	A→T	15.9%	intergenic (‑88/‑131)	ygjH ← / → ebgR	conserved hypothetical protein/DNA‑binding transcriptional repressor
RA	2,073,779	G→A	25.0%	G145D (GGT→GAT)	ebgA →	cryptic beta‑D‑galactosidase, alpha subunit
RA	2,087,666	C→T	13.7%	T54I (ACC→ATC)	yhaH →	predicted inner membrane protein
RA	2,093,700	A→G	7.3%	V384V (GTT→GTC)	tdcG ←	L‑serine dehydratase 3
RA	2,093,706	A→G	7.3%	D382D (GAT→GAC)	tdcG ←	L‑serine dehydratase 3
RA	2,093,709	G→A	7.7%	C381C (TGC→TGT)	tdcG ←	L‑serine dehydratase 3
RA	2,093,712	G→C	8.1%	T380T (ACC→ACG)	tdcG ←	L‑serine dehydratase 3
RA	2,093,718	C→A	7.7%	G378G (GGG→GGT)	tdcG ←	L‑serine dehydratase 3
RA	2,093,721	A→G	7.9%	L377L (CTT→CTC)	tdcG ←	L‑serine dehydratase 3
RA	2,093,727	A→G	7.7%	H375H (CAT→CAC)	tdcG ←	L‑serine dehydratase 3
RA	2,093,736	C→G	6.1%	A372A (GCG→GCC)	tdcG ←	L‑serine dehydratase 3
RA	2,094,000	T→C	16.7%	A284A (GCA→GCG)	tdcG ←	L‑serine dehydratase 3
RA	2,094,003	C→A	16.6%	T283T (ACG→ACT)	tdcG ←	L‑serine dehydratase 3
RA	2,094,006	T→C	14.3%	V282V (GTA→GTG)	tdcG ←	L‑serine dehydratase 3
RA	2,094,015	C→A	12.9%	G279G (GGG→GGT)	tdcG ←	L‑serine dehydratase 3
RA	2,094,024	T→A	11.8%	A276A (GCA→GCT)	tdcG ←	L‑serine dehydratase 3
RA	2,094,030	T→C	8.2%	E274E (GAA→GAG)	tdcG ←	L‑serine dehydratase 3
RA	2,094,036	A→G	6.7%	S272S (AGT→AGC) ‡	tdcG ←	L‑serine dehydratase 3
RA	2,094,037	C→T	6.9%	S272N (AGT→AAT) ‡	tdcG ←	L‑serine dehydratase 3
RA	2,094,039	A→C	7.0%	V271V (GTT→GTG)	tdcG ←	L‑serine dehydratase 3
RA	2,094,042	C→T	6.7%	A270A (GCG→GCA)	tdcG ←	L‑serine dehydratase 3
RA	2,107,580	Δ1 bp	8.6%	coding (518/1155 nt)	agaS →	tagatose‑6‑phosphate ketose/aldose isomerase
RA	2,130,614	A→G	7.4%	F97F (TTT→TTC)	mtr ←	tryptophan transporter of high affinity
RA	2,130,622	T→C	7.9%	I95V (ATT→GTT)	mtr ←	tryptophan transporter of high affinity
RA	2,130,625	A→T	7.4%	S94T (TCC→ACC)	mtr ←	tryptophan transporter of high affinity
JC	2,133,760	Δ6 bp	18.5%	coding (253‑258/891 nt)	nlpI ←	conserved hypothetical protein
RA	2,140,377	T→A	11.1%	D244V (GAT→GTT)	infB ←	fused protein chain initiation factor 2, IF2
RA	2,155,567	A→T	7.5%	intergenic (+78/+108)	dacB → / ← obgE	D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair
RA	2,155,591	T→A	5.4%	intergenic (+102/+84)	dacB → / ← obgE	D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair
RA	2,192,465	C→T	45.0%	D80N (GAT→AAT)	sspA ←	stringent starvation protein A
RA	2,207,505	C→T	40.0%	intergenic (‑195/+235)	tldD ← / ← yhdP	predicted peptidase/conserved membrane protein, predicted transporter
RA	2,211,696	G→A	49.2%	A461V (GCG→GTG)	rng ←	ribonuclease G
RA	2,225,948	G→C	21.6%	V129V (GTG→GTC)	dusB →	tRNA‑dihydrouridine synthase B
RA	2,258,086	G→A	8.4%	D1019D (GAC→GAT)	rpoB ←	RNA polymerase, beta subunit
RA	2,270,301	T→C	6.4%	T10T (ACA→ACG)	murB ←	UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
RA	2,292,617	A→G	19.7%	intergenic (+168/‑253)	fsaB → / → gldA	fructose‑6‑phosphate aldolase 2/glycerol dehydrogenase, NAD
RA	2,294,050	A→C	18.6%	intergenic (+77/‑198)	gldA → / → yijF	glycerol dehydrogenase, NAD/conserved hypothetical protein
RA	2,294,089	C→A	7.1%	intergenic (+116/‑159)	gldA → / → yijF	glycerol dehydrogenase, NAD/conserved hypothetical protein
RA	2,331,252	A→C	18.1%	intergenic (‑157/+273)	sodA ← / ← fdhD	superoxide dismutase, Mn/formate dehydrogenase formation protein
RA	2,333,257	G→A	49.2%	A236T (GCT→ACT)	fdoG →	formate dehydrogenase‑O, large subunit
RA	2,335,701	A→G	60.0%	E29E (GAA→GAG)	fdoH →	formate dehydrogenase‑O, Fe‑S subunit
RA	2,359,867	G→A	44.3%	noncoding (1228/2905 nt)	rrlA ←	23S ribosomal RNA
RA	2,359,876	C→T	38.7%	noncoding (1219/2905 nt)	rrlA ←	23S ribosomal RNA
RA	2,366,284	A→G	19.2%	I390T (ATC→ACC)	pepQ ←	proline dipeptidase
RA	2,381,041	C→T	17.6%	E80E (GAG→GAA)	rmuC ←	predicted recombination limiting protein
RA	2,402,822	T→C	12.6%	E70G (GAG→GGG)	yigA ←	conserved hypothetical protein
RA	2,421,748	T→C	16.8%	K196K (AAA→AAG)	wzxE ←	O‑antigen translocase
RA	2,429,583	C→T	51.5%	intergenic (‑1/+11)	wzzE ← / ← rfe	Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase
RA	2,430,365	T→C	20.3%	I111M (ATA→ATG)	rfe ←	UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase
RA	2,449,933	A→G	15.4%	S440G (AGT→GGT)	yifB →	predicted bifunctional protein, enzyme and transcriptional regulator
RA	2,477,634	C→T	14.0%	P227L (CCG→CTG)	pstA →	phosphate transporter subunit
RA	2,491,691	C→T	60.0%	T163I (ACC→ATC)	gyrB →	DNA gyrase, subunit B
RA	2,493,676	T→C	5.6%	intergenic (+58/‑317)	gyrB → / → ibpA	DNA gyrase, subunit B/heat shock chaperone
RA	2,493,839	A→C	16.4%	intergenic (+221/‑154)	gyrB → / → ibpA	DNA gyrase, subunit B/heat shock chaperone
RA	2,560,276	C→T	45.4%	intergenic (‑16/+182)	yibK ← / ← lldD	predicted rRNA methylase/L‑lactate dehydrogenase, FMN‑linked
RA	2,569,763	G→T	5.4%	L11L (CTG→CTT)	yibI →	predicted inner membrane protein
RA	2,569,766	C→T	5.2%	I12I (ATC→ATT)	yibI →	predicted inner membrane protein
RA	2,569,841	C→T	5.4%	N37N (AAC→AAT)	yibI →	predicted inner membrane protein
RA	2,569,847	C→T	5.9%	P39P (CCC→CCT)	yibI →	predicted inner membrane protein
RA	2,569,859	T→C	8.6%	A43A (GCT→GCC)	yibI →	predicted inner membrane protein
RA	2,569,866	A→G	8.8%	T46A (ACG→GCG) ‡	yibI →	predicted inner membrane protein
RA	2,569,867	C→T	9.7%	T46M (ACG→ATG) ‡	yibI →	predicted inner membrane protein
RA	2,569,868	G→T	9.7%	T46T (ACG→ACT) ‡	yibI →	predicted inner membrane protein
RA	2,569,871	G→T	9.5%	A47A (GCG→GCT)	yibI →	predicted inner membrane protein
RA	2,569,874	C→T	9.0%	G48G (GGC→GGT)	yibI →	predicted inner membrane protein
RA	2,569,883	C→T	10.9%	S51S (AGC→AGT)	yibI →	predicted inner membrane protein
RA	2,570,755	T→G	7.3%	T220T (ACT→ACG)	yibH →	hypothetical protein
RA	2,570,756	G→A	7.4%	V221I (GTC→ATC) ‡	yibH →	hypothetical protein
RA	2,570,758	C→A	7.2%	V221V (GTC→GTA) ‡	yibH →	hypothetical protein
RA	2,570,759	A→G	7.2%	I222V (ATT→GTT) ‡	yibH →	hypothetical protein
RA	2,570,761	T→G	7.5%	I222M (ATT→ATG) ‡	yibH →	hypothetical protein
RA	2,570,764	C→T	8.0%	R223R (CGC→CGT)	yibH →	hypothetical protein
RA	2,570,774	A→G	6.5%	N227D (AAT→GAT)	yibH →	hypothetical protein
RA	2,570,779	C→T	6.6%	G228G (GGC→GGT)	yibH →	hypothetical protein
RA	2,570,782	C→T	6.7%	Y229Y (TAC→TAT)	yibH →	hypothetical protein
RA	2,570,785	T→G	5.4%	V230V (GTT→GTG)	yibH →	hypothetical protein
RA	2,570,788	T→C	5.4%	T231T (ACT→ACC)	yibH →	hypothetical protein
RA	2,570,800	C→T	5.8%	I235I (ATC→ATT)	yibH →	hypothetical protein
RA	2,570,803	C→T	6.4%	R236R (CGC→CGT)	yibH →	hypothetical protein
RA	2,571,148	C→T	12.1%	S351S (TCC→TCT)	yibH →	hypothetical protein
RA	2,571,151	C→T	11.8%	D352D (GAC→GAT)	yibH →	hypothetical protein
RA	2,571,166	T→C	13.8%	V357V (GTT→GTC)	yibH →	hypothetical protein
RA	2,571,178	G→C	14.5%	R361R (CGG→CGC)	yibH →	hypothetical protein
RA	2,571,187	G→A	9.8%	L364L (CTG→CTA)	yibH →	hypothetical protein
RA	2,571,188	C→T	9.8%	L365L (CTA→TTA)	yibH →	hypothetical protein
RA	2,571,191	A→C	9.6%	R366R (AGA→CGA) ‡	yibH →	hypothetical protein
RA	2,571,193	A→C	9.4%	R366S (AGA→AGC) ‡	yibH →	hypothetical protein
RA	2,571,206	A→G	7.4%	M371V (ATG→GTG)	yibH →	hypothetical protein
RA	2,571,371	T→C	6.6%	intergenic (+139/‑1640)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,572,487	A→G	21.0%	intergenic (+1255/‑524)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,572,705	C→T	18.4%	intergenic (+1473/‑306)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,572,707	T→C	18.4%	intergenic (+1475/‑304)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,572,708	A→C	17.5%	intergenic (+1476/‑303)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,572,711	T→C	13.3%	intergenic (+1479/‑300)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,572,713	C→T	16.4%	intergenic (+1481/‑298)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,572,717	C→T	7.3%	intergenic (+1485/‑294)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,572,727	G→T	15.4%	intergenic (+1495/‑284)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,572,736	T→A	12.7%	intergenic (+1504/‑275)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,572,941	G→A	20.4%	intergenic (+1709/‑70)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,572,989	T→C	12.5%	intergenic (+1757/‑22)	yibH → / → ysaB	hypothetical protein/hypothetical protein
RA	2,584,314	A→G	5.1%	V988A (GTT→GCT)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,316	C→T	5.7%	L987L (CTG→CTA)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,322	C→T	5.6%	L985L (CTG→CTA) ‡	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,324	G→A	5.6%	L985L (CTG→TTG) ‡	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,325	C→T	5.6%	V984V (GTG→GTA)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,343	C→G	9.5%	L978L (CTG→CTC)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,361	T→A	9.6%	P972P (CCA→CCT)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,364	G→A	9.9%	R971R (CGC→CGT)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,367	T→C	9.4%	L970L (TTA→TTG) ‡	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,369	A→G	10.7%	L970L (TTA→CTA) ‡	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,580	C→A	6.9%	V899V (GTG→GTT)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,588	A→C	7.2%	F897V (TTC→GTC)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,589	C→A	7.1%	P896P (CCG→CCT)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,604	C→T	8.5%	E891E (GAG→GAA)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,584,820	G→A	8.7%	G819G (GGC→GGT)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,011	T→C	9.3%	E422E (GAA→GAG)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,015	G→A	9.2%	A421V (GCG→GTG) ‡	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,016	C→T	9.3%	A421T (GCG→ACG) ‡	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,017	A→C	9.2%	I420M (ATT→ATG)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,020	G→C	8.9%	V419V (GTC→GTG)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,023	A→G	9.6%	R418R (CGT→CGC)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,047	G→T	9.6%	I410I (ATC→ATA)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,050	G→C	9.7%	A409A (GCC→GCG)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,053	G→A	7.0%	D408D (GAC→GAT)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,059	C→G	7.8%	V406V (GTG→GTC)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,062	C→G	7.8%	L405L (CTG→CTC)	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,065	T→C	6.7%	L404L (TTA→TTG) ‡	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,586,067	A→G	6.4%	L404L (TTA→CTA) ‡	mdtF ←	multidrug transporter, RpoS‑dependent
RA	2,595,260	G→A	5.4%	C12C (TGC→TGT)	arsC ←	arsenate reductase
RA	2,595,278	A→G	7.9%	I6I (ATT→ATC)	arsC ←	arsenate reductase
RA	2,595,306	C→A	20.7%	intergenic (‑11/+2)	arsC ← / ← arsB	arsenate reductase/arsenite/antimonite transporter
RA	2,595,319	A→C	15.7%	F427V (TTC→GTC)	arsB ←	arsenite/antimonite transporter
RA	2,595,326	A→C	12.5%	R424R (CGT→CGG)	arsB ←	arsenite/antimonite transporter
RA	2,595,329	T→C	10.9%	L423L (CTA→CTG) ‡	arsB ←	arsenite/antimonite transporter
RA	2,595,330	A→C	10.7%	L423R (CTA→CGA) ‡	arsB ←	arsenite/antimonite transporter
RA	2,595,331	G→A	10.8%	L423L (CTA→TTA) ‡	arsB ←	arsenite/antimonite transporter
RA	2,595,341	A→G	7.9%	A419A (GCT→GCC)	arsB ←	arsenite/antimonite transporter
RA	2,595,347	C→A	7.9%	T417T (ACG→ACT)	arsB ←	arsenite/antimonite transporter
RA	2,595,350	C→G	7.4%	V416V (GTG→GTC)	arsB ←	arsenite/antimonite transporter
RA	2,595,376	T→C	6.7%	I408V (ATC→GTC)	arsB ←	arsenite/antimonite transporter
RA	2,595,380	C→G	7.1%	G406G (GGG→GGC)	arsB ←	arsenite/antimonite transporter
RA	2,595,383	T→G	6.9%	T405T (ACA→ACC)	arsB ←	arsenite/antimonite transporter
RA	2,595,404	G→A	9.4%	S398S (AGC→AGT) ‡	arsB ←	arsenite/antimonite transporter
RA	2,595,405	C→G	9.3%	S398T (AGC→ACC) ‡	arsB ←	arsenite/antimonite transporter
RA	2,595,538	A→T	9.3%	S354T (TCT→ACT)	arsB ←	arsenite/antimonite transporter
RA	2,595,539	T→C	9.5%	A353A (GCA→GCG)	arsB ←	arsenite/antimonite transporter
RA	2,595,545	G→A	8.5%	S351S (AGC→AGT)	arsB ←	arsenite/antimonite transporter
RA	2,595,548	G→C	8.5%	G350G (GGC→GGG)	arsB ←	arsenite/antimonite transporter
RA	2,595,551	A→G	8.1%	D349D (GAT→GAC)	arsB ←	arsenite/antimonite transporter
RA	2,595,557	G→C	9.9%	S347S (TCC→TCG)	arsB ←	arsenite/antimonite transporter
RA	2,595,562	A→G	9.8%	L346L (TTG→CTG)	arsB ←	arsenite/antimonite transporter
RA	2,595,566	G→A	8.9%	G344G (GGC→GGT)	arsB ←	arsenite/antimonite transporter
RA	2,595,571	C→T	10.2%	V343I (GTT→ATT)	arsB ←	arsenite/antimonite transporter
RA	2,595,575	T→C	10.5%	V341V (GTA→GTG)	arsB ←	arsenite/antimonite transporter
RA	2,595,737	G→C	14.8%	L287L (CTC→CTG)	arsB ←	arsenite/antimonite transporter
RA	2,595,740	C→T	13.8%	S286S (TCG→TCA)	arsB ←	arsenite/antimonite transporter
RA	2,595,746	G→A	15.6%	I284I (ATC→ATT)	arsB ←	arsenite/antimonite transporter
RA	2,595,749	G→A	14.6%	V283V (GTC→GTT)	arsB ←	arsenite/antimonite transporter
RA	2,595,752	A→G	16.7%	I282I (ATT→ATC)	arsB ←	arsenite/antimonite transporter
RA	2,595,761	G→T	17.9%	P279P (CCC→CCA)	arsB ←	arsenite/antimonite transporter
RA	2,595,764	G→C	18.0%	A278A (GCC→GCG)	arsB ←	arsenite/antimonite transporter
RA	2,595,782	A→T	6.7%	G272G (GGT→GGA)	arsB ←	arsenite/antimonite transporter
RA	2,595,785	C→G	6.9%	T271T (ACG→ACC)	arsB ←	arsenite/antimonite transporter
RA	2,595,788	A→G	6.7%	N270N (AAT→AAC)	arsB ←	arsenite/antimonite transporter
RA	2,595,791	A→G	5.5%	I269I (ATT→ATC)	arsB ←	arsenite/antimonite transporter
RA	2,596,127	G→A	9.5%	S157S (TCC→TCT)	arsB ←	arsenite/antimonite transporter
RA	2,596,130	G→A	9.6%	V156V (GTC→GTT)	arsB ←	arsenite/antimonite transporter
RA	2,596,136	A→G	11.3%	L154L (CTT→CTC)	arsB ←	arsenite/antimonite transporter
RA	2,596,151	G→C	10.9%	T149T (ACC→ACG)	arsB ←	arsenite/antimonite transporter
RA	2,596,157	G→T	10.1%	A147A (GCC→GCA)	arsB ←	arsenite/antimonite transporter
RA	2,596,163	G→A	7.4%	F145F (TTC→TTT)	arsB ←	arsenite/antimonite transporter
RA	2,596,169	G→T	6.7%	A143A (GCC→GCA)	arsB ←	arsenite/antimonite transporter
RA	2,596,172	C→A	6.8%	A142A (GCG→GCT)	arsB ←	arsenite/antimonite transporter
RA	2,596,178	C→G	7.0%	V140V (GTG→GTC)	arsB ←	arsenite/antimonite transporter
RA	2,608,096	T→C	7.2%	intergenic (‑206/+104)	pitA ← / ← nikR	phosphate transporter, low‑affinity/DNA‑binding transcriptional regulator, Ni‑binding
RA	2,620,159	C→T	7.8%	A194T (GCA→ACA)	zntA ←	zinc, cobalt and lead efflux system
RA	2,623,821	G→A	8.6%	A292A (GCG→GCA)	ftsY →	fused Signal Recognition Particle (SRP) receptor
RA	2,668,449	G→A	13.7%	intergenic (‑438/‑174)	malT ← / → malP	DNA‑binding transcriptional activator, maltotriose‑ATP‑binding/maltodextrin phosphorylase
RA	2,677,365	T→A	5.8%	M189L (ATG→TTG)	yhgA ←	predicted transposase
RA	2,677,369	G→A	6.2%	D187D (GAC→GAT)	yhgA ←	predicted transposase
RA	2,677,375	T→C	8.0%	Q185Q (CAA→CAG)	yhgA ←	predicted transposase
RA	2,677,390	T→C	9.7%	Q180Q (CAA→CAG)	yhgA ←	predicted transposase
RA	2,677,404	G→A	7.7%	L176L (CTG→TTG)	yhgA ←	predicted transposase
RA	2,677,414	A→T	6.7%	R172R (CGT→CGA) ‡	yhgA ←	predicted transposase
RA	2,677,415	C→T	6.6%	R172H (CGT→CAT) ‡	yhgA ←	predicted transposase
RA	2,677,416	G→T	6.4%	R172S (CGT→AGT) ‡	yhgA ←	predicted transposase
RA	2,677,417	T→G	6.5%	R171R (CGA→CGC)	yhgA ←	predicted transposase
RA	2,677,423	C→T	6.9%	Q169Q (CAG→CAA)	yhgA ←	predicted transposase
RA	2,677,429	G→A	5.2%	I167I (ATC→ATT)	yhgA ←	predicted transposase
RA	2,694,258	C→T	41.7%	E124K (GAA→AAA)	yrfF ←	predicted inner membrane protein
RA	2,708,913	G→A	22.2%	E54E (GAG→GAA)	yhfZ →	conserved hypothetical protein
RA	2,746,780	A→G	9.2%	*118* (TAA→TGA)	rplR →	50S ribosomal subunit protein L18
RA	2,748,276	A→G	13.2%	S117G (AGC→GGC)	secY →	preprotein translocase membrane subunit
RA	2,758,182	C→T	45.5%	V52I (GTT→ATT)	def ←	peptide deformylase
RA	2,773,670	Δ1 bp	14.0%	intergenic (+59/‑124)	aceA → / → aceK	isocitrate lyase/isocitrate dehydrogenase kinase/phosphatase
RA	2,790,849	C→T	16.0%	intergenic (+244/‑531)	pgi → / → ubiC	glucosephosphate isomerase/chorismate pyruvate lyase
RA	2,792,242	C→T	38.0%	T118I (ACC→ATC)	ubiA →	p‑hydroxybenzoate octaprenyltransferase
RA	2,823,628	G→A	12.6%	intergenic (+373/+585)	nrfG → / ← pheU	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG/tRNA‑Phe
RA	2,823,871	A→G	34.9%	intergenic (+616/+342)	nrfG → / ← pheU	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG/tRNA‑Phe
RA	2,827,357	G→A	52.0%	A298V (GCA→GTA)	dcuA ←	C4‑dicarboxylate antiporter
RA	2,870,827	G→A	20.0%	intergenic (+70/‑110)	rnr → / → rlmB	exoribonuclease R, RNase R/23S rRNA (Gm2251)‑methyltransferase
RA	2,870,829	G→A	23.4%	intergenic (+72/‑108)	rnr → / → rlmB	exoribonuclease R, RNase R/23S rRNA (Gm2251)‑methyltransferase
RA	2,870,843	G→A	21.5%	intergenic (+86/‑94)	rnr → / → rlmB	exoribonuclease R, RNase R/23S rRNA (Gm2251)‑methyltransferase
RA	2,870,850	T→A	15.7%	intergenic (+93/‑87)	rnr → / → rlmB	exoribonuclease R, RNase R/23S rRNA (Gm2251)‑methyltransferase
RA	2,877,709	T→A	25.8%	intergenic (+112/‑197)	fklB → / → cycA	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/D‑alanine/D‑serine/glycine transporter
RA	2,891,414	C→A	23.3%	P23P (CCC→CCA)	ytfQ →	predicted sugar transporter subunit
RA	2,906,377	G→T	6.5%	R396R (CGC→CGA)	treB ←	fused trehalose(maltose)‑specific enzyme IIBC component of PTS
RA	2,918,976	T→G	7.5%	A240A (GCA→GCC)	argI ←	ornithine carbamoyltransferase 1
RA	2,918,979	T→C	7.8%	E239E (GAA→GAG)	argI ←	ornithine carbamoyltransferase 1
RA	2,918,982	C→G	8.4%	G238G (GGG→GGC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,021	A→G	5.2%	G225G (GGT→GGC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,153	A→C	6.3%	G181G (GGT→GGG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,159	A→C	6.5%	L179L (CTT→CTG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,168	A→C	5.9%	A176A (GCT→GCG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,174	G→C	7.2%	L174L (CTC→CTG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,183	A→G	10.8%	N171N (AAT→AAC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,198	A→G	15.7%	R166R (CGT→CGC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,204	G→A	17.4%	D164D (GAC→GAT)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,207	A→G	18.0%	G163G (GGT→GGC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,210	T→C	17.2%	A162A (GCA→GCG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,213	A→G	18.3%	Y161Y (TAT→TAC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,228	T→C	17.8%	E156E (GAA→GAG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,234	G→A	14.4%	F154F (TTC→TTT)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,240	T→C	12.9%	K152K (AAA→AAG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,246	G→C	11.2%	P150P (CCC→CCG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,251	A→G	10.7%	L149L (TTG→CTG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,252	A→G	10.7%	H148H (CAT→CAC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,267	G→C	7.1%	L143L (CTC→CTG) ‡	argI ←	ornithine carbamoyltransferase 1
RA	2,919,269	G→T	7.6%	L143I (CTC→ATC) ‡	argI ←	ornithine carbamoyltransferase 1
RA	2,919,270	A→C	7.7%	L142L (CTT→CTG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,273	A→G	7.7%	D141D (GAT→GAC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,348	T→C	5.7%	T116T (ACA→ACG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,357	A→C	7.1%	I113M (ATT→ATG) ‡	argI ←	ornithine carbamoyltransferase 1
RA	2,919,359	T→C	7.6%	I113V (ATT→GTT) ‡	argI ←	ornithine carbamoyltransferase 1
RA	2,919,360	C→T	7.6%	E112E (GAG→GAA)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,366	A→G	6.7%	G110G (GGT→GGC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,369	A→G	6.7%	Y109Y (TAT→TAC) ‡	argI ←	ornithine carbamoyltransferase 1
RA	2,919,371	A→G	6.4%	Y109H (TAT→CAT) ‡	argI ←	ornithine carbamoyltransferase 1
RA	2,919,372	G→A	6.4%	G108G (GGC→GGT)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,387	A→G	6.6%	G103G (GGT→GGC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,408	C→A	6.4%	V96V (GTG→GTT)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,429	C→T	6.8%	S89S (TCG→TCA)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,441	A→C	9.1%	G85G (GGT→GGG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,459	T→C	9.3%	P79P (CCA→CCG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,462	G→C	8.0%	G78G (GGC→GGG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,465	G→T	9.9%	L77L (CTC→CTA) ‡	argI ←	ornithine carbamoyltransferase 1
RA	2,919,467	G→A	8.6%	L77F (CTC→TTC) ‡	argI ←	ornithine carbamoyltransferase 1
RA	2,919,471	A→G	9.4%	T75T (ACT→ACC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,480	A→C	8.5%	A72A (GCT→GCG)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,483	A→G	8.9%	G71G (GGT→GGC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,493	T→A	13.0%	Y68F (TAT→TTT)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,516	T→A	14.6%	R60R (CGA→CGT)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,564	A→G	10.7%	T44T (ACT→ACC)	argI ←	ornithine carbamoyltransferase 1
RA	2,919,567	G→A	8.3%	L43L (CTC→CTT)	argI ←	ornithine carbamoyltransferase 1
RA	2,936,957	C→T	15.4%	A213T (GCC→ACC)	yjgB ←	predicted alcohol dehydrogenase, Zn‑dependent and NAD(P)‑binding
RA	2,946,407	G→A	29.2%	intergenic (‑121/+121)	fecI ← / ← dnaC	RNA polymerase, sigma 19 factor/DNA biosynthesis protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	571854–571911	571933	23–80	14 [12]	[12] 14	ybjE/aqpZ	predicted transporter/aquaporin
*	*	÷	minE	865545	865596	52	14 [13]	[13] 15	[yciQ]	[yciQ]
*	*	÷	minE	2858102	2858155	54	14 [12]	[13] 15	amiB	N‑acetylmuramoyl‑l‑alanine amidase II

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	= 5671	67 (1.120)	4 (0.070)	4/90	NT	7.0%	intergenic (+141/+12)	yaaX/yaaA	hypothetical protein/conserved hypothetical protein
	?	minE	2094909 =	44 (0.800)					intergenic (‑58/+394)	tdcG/rnpB	L‑serine dehydratase 3/RNase P
*	?	minE	15385 =	35 (0.580)	10 (0.170)	8/96	NT	23.7%	intergenic (+87/+60)	dnaJ/mokC	chaperone Hsp40, co‑chaperone with DnaK/regulatory protein for HokC, overlaps CDS of hokC
	?	minE	= 1570889	30 (0.510)					intergenic (+26/+210)	nupC/alaX	nucleoside (except guanosine) transporter/tRNA‑Ala
*	?	minE	= 18241	73 (1.220)	17 (0.280)	14/98	NT	23.1%	intergenic (+80/+252)	nhaR/rpsT	DNA‑binding transcriptional activator/30S ribosomal subunit protein S20
	?	minE	1502766 =	40 (0.670)					intergenic (‑139/‑781)	lrhA/yfbQ	DNA‑binding transcriptional repressor/predicted aminotransferase
*	?	minE	= 95243	93 (1.550)	9 (0.190) +TGATCCGGTA	3/78	NT	10.3%	coding (2225/2706 nt)	secA	preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
	?	minE	= 2270306	105 (1.750)					coding (25/1029 nt)	murB	UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
*	?	minE	= 499542	41 (0.680)	4 (0.090) +GCCTGTGCTTG	3/76	NT	11.4%	coding (702/1473 nt)	modF	fused subunits of molybdate transporter and ATP‑binding components of ABC superfamily
	?	minE	713558 =	39 (0.650)					coding (544/561 nt)	yceB	predicted lipoprotein
*	?	minE	= 1368855	36 (0.600)	26 (0.450) +AT	10/94	NT	54.6%	coding (560/948 nt)	dusC	tRNA‑dihydrouridine synthase C
	?	minE	1611749 =	9 (0.150)					coding (1404/1404 nt)	eutA	reactivating factor for ethanolamine ammonia lyase
*	?	minE	= 1444537	30 (0.500)	8 (0.260) +24 bp	7/50	NT	39.0%	intergenic (+158/+42)	rcsB/rcsC	DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
	?	minE	2205773 =	19 (0.320)					intergenic (+42/+92)	aaeR/tldD	predicted DNA‑binding transcriptional regulator, efflux system/predicted peptidase
*	?	minE	1474843 =	22 (0.370)	6 (0.130) +CGCTGCGATTT	3/76	NT	20.0%	intergenic (+141/‑93)	nrdA/nrdB	ribonucleoside diphosphate reductase 1, alpha subunit/ribonucleoside diphosphate reductase 1, beta subunit, ferritin‑like
	?	minE	2636227 =	40 (0.670)					intergenic (+47/‑51)	ugpB/ugpA	glycerol‑3‑phosphate transporter subunit/glycerol‑3‑phosphate transporter subunit
*	?	minE	1864319 =	68 (1.140)	25 (0.490) +TTGATGT	7/84	NT	30.2%	intergenic (+66/+82)	ygcP/ygcQ	predicted anti‑terminator regulatory protein/predicted flavoprotein
	?	minE	2870817 =	67 (1.120)					intergenic (+60/‑120)	rnr/rlmB	exoribonuclease R, RNase R/23S rRNA (Gm2251)‑methyltransferase