mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 13,901 | A→G | D580G (GAC→GGC) | dnaK → | chaperone protein DnaK |
| RA | 19,070 | T→C | V119A (GTA→GCA) | nhaR → | DNA‑binding transcriptional activator NhaR |
| RA | 25,867 | C→T | H14H (CAC→CAT) | fkpB → | peptidyl‑prolyl cis‑trans isomerase FkpB |
| RA | 29,204 | T→C | intergenic (+9/‑447) | dapB → / → carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha |
| RA | 35,715 | G→A | L150L (CTG→TTG) | caiD ← | crotonobetainyl‑CoA hydratase |
| RA | 43,173 | A→G | *257* (TAA→TAG) | fixA → | putative electron transfer flavoprotein FixA |
| RA | 49,241 | G→A | L491L (TTG→TTA) | kefC → | K(+) : H(+) antiporter KefC |
| RA | 55,712 | A→G | Y466Y (TAT→TAC) | lptD ← | lipopolysaccharide assembly protein LptD |
| RA | 59,338 | C→T | intergenic (+59/+349) | yabQ → / ← rluA | protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase |
| RA | 63,698 | A→G | Y695H (TAT→CAT) | polB ← | DNA polymerase II |
| RA | 73,641 | A→G | L294S (TTA→TCA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 77,593 | (T)8→9 | noncoding (227/227 nt) | sgrS → | small regulatory RNA SgrS |
| RA | 77,704 | C→T | A28A (GCC→GCT) | setA → | sugar exporter SetA |
| RA | 78,635 | (G)5→4 | coding (1015/1179 nt) | setA → | sugar exporter SetA |
| RA | 79,341 | C→A | G38V (GGT→GTT) | leuD ← | 3‑isopropylmalate dehydratase subunit LeuD |
| RA | 80,792 | A→G | L25L (TTA→CTA) | leuC ← | 3‑isopropylmalate dehydratase subunit LeuC |
| RA | 89,913 | A→G | I94V (ATC→GTC) | mraZ → | DNA‑binding transcriptional repressor MraZ |
| RA | 91,323 | G→A | E98K (GAA→AAA) | ftsL → | cell division protein FtsL |
| RA | 104,426 | C→T | L149F (CTT→TTT) | ftsA → | cell division protein FtsA |
| RA | 131,443 | Δ1 bp | intergenic (‑183/‑172) | yacH ← / → acnB | DUF3300 domain‑containing protein YacH/hypothetical protein |
| RA | 147,516 | C→T | R183R (CGC→CGT) | rpnC → | recombination‑promoting nuclease RpnC |
| RA | 150,562 | A→G | I131T (ATA→ACA) | yadC ← | fimbrial tip‑adhesin YadC |
| RA | 150,833 | A→G | S41P (TCC→CCC) | yadC ← | fimbrial tip‑adhesin YadC |
| RA | 152,807 | (T)5→4 | coding (6/570 nt) | yadM ← | putative fimbrial protein YadM |
| RA | 163,469 | C→T | G455G (GGC→GGT) | hrpB → | putative ATP‑dependent RNA helicase HrpB |
| RA | 164,352 | C→T | L750L (CTG→TTG) | hrpB → | putative ATP‑dependent RNA helicase HrpB |
| RA | 168,921 | Δ1 bp | coding (1438/2244 nt) | fhuA → | ferrichrome outer membrane transporter/phage receptor |
| RA | 183,729 | C→T | E123K (GAA→AAA) | yaeH ← | DUF3461 domain‑containing protein YaeH |
| RA | 191,485 | A→G | E210G (GAA→GGA) | tsf → | protein chain elongation factor EF‑Ts |
| RA | 192,324 | A→G | E157G (GAA→GGA) | pyrH → | UMP kinase |
| RA | 208,192 | T→A | S1023T (TCC→ACC) | dnaE → | DNA polymerase III subunit alpha |
| RA | 215,731 | (T)5→4 | coding (463/711 nt) | nlpE → | lipoprotein NlpE |
| RA | 221,181 | C→T | V147V (GTG→GTA) | metI ← | L‑methionine/D‑methionine ABC transporter membrane subunit |
| RA | 221,842 | C→T | M268I (ATG→ATA) | metN ← | L‑methionine/D‑methionine ABC transporter ATP binding subunit |
| RA | 227,039 | Δ1 bp | noncoding (1281/2904 nt) | rrlH → | 23S ribosomal RNA |
| RA | 229,044 | (T)8→7 | intergenic (+40/‑123) | aspU → / → dkgB | tRNA‑Asp/methylglyoxal reductase DkgB |
| RA | 231,190 | Δ1 bp | coding (69/801 nt) | yafD → | endonuclease/exonuclease/phosphatase domain‑containing protein YafD |
| RA | 238,652 | (A)6→5 | coding (85/480 nt) | ykfM ← | uncharacterized protein YkfM |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 264,717 | (A)5→6 | coding (16/477 nt) | ykfG ← | CP4‑6 prophage; RadC‑like JAB domain‑containing protein YkfG |
| RA | 267,012 | A→G | intergenic (‑459/+172) | yafY ← / ← yafZ | CP4‑6 prophage; inner membrane lipoprotein YafY/CP4‑6 prophage; conserved protein YafZ |
| RA | 268,409 | C→T | E184E (GAG→GAA) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein YkfA |
| RA | 273,644 | G→A | A266A (GCG→GCA) | ykfC → | CP4‑6 prophage; PF00078 domain‑containing protein YkfC |
| RA | 278,518 | Δ1 bp | coding (285/1047 nt) | afuC ← | CP4‑6 prophage; ABC transporter ATP‑binding protein AfuC |
| RA | 293,374 | A→G | V182A (GTT→GCT) | yagL ← | CP4‑6 prophage; resolvase‑like catalytic domain‑containing protein YagL |
| RA | 298,160 | C→G | A189A (GCG→GCC) | paoD ← | molybdenum cofactor insertion chaperone for PaoABC |
| RA | 304,754 | C→T | R151Q (CGA→CAA) | ecpE ← | putative fimbrial chaperone EcpE |
| RA | 308,082 | Δ1 bp | coding (1251/2526 nt) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 311,801 | G→A | intergenic (‑465/‑311) | ecpR ← / → ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL |
| RA | 311,887 | (C)5→4 | intergenic (‑551/‑225) | ecpR ← / → ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL |
| RA | 314,142 | T→A | intergenic (‑337/‑215) | ykgP ← / → eaeH | putative oxidoreductase/putative porin domain‑containing protein EaeH |
| RA | 314,734 | Δ1 bp | pseudogene (378/888 nt) | eaeH → | putative porin domain‑containing protein EaeH |
| RA | 315,000 | A→G | pseudogene (644/888 nt) | eaeH → | putative porin domain‑containing protein EaeH |
| RA | 319,137 | C→G | A289P (GCG→CCG) | rclA ← | putative pyridine nucleotide‑disulfide oxidoreductase RclA |
| RA | 334,105 | T→G | H110P (CAC→CCC) | yahB ← | putative LysR‑type DNA‑binding transcriptional regulator YahB |
| RA | 341,434 | C→G | P104A (CCG→GCG) | yahJ → | putative deaminase with metallo‑dependent hydrolase domain |
| RA | 346,601 | (A)6→5 | coding (118/276 nt) | yahO → | DUF1471 domain‑containing protein YahO |
| RA | 351,307 | A→G | K31K (AAA→AAG) | prpD → | 2‑methylcitrate dehydratase |
| RA | 387,209 | T→C | L80P (CTG→CCG) | tauC → | taurine ABC transporter membrane subunit |
| RA | 387,413 | T→A | L148Q (CTG→CAG) | tauC → | taurine ABC transporter membrane subunit |
| RA | 389,984 | A→G | intergenic (‑257/‑267) | hemB ← / → yaiT | porphobilinogen synthase/putative autotransporter YaiT |
| RA | 390,136 | A→G | intergenic (‑409/‑115) | hemB ← / → yaiT | porphobilinogen synthase/putative autotransporter YaiT |
| RA | 396,819 | (T)6→5 | coding (181/1221 nt) | sbmA → | peptide antibiotic/peptide nucleic acid transporter |
| RA | 396,964 | A→G | N109S (AAC→AGC) | sbmA → | peptide antibiotic/peptide nucleic acid transporter |
| RA | 398,065 | A→G | E65G (GAA→GGA) | yaiW → | surface‑exposed outer membrane lipoprotein |
| RA | 399,509 | T→C | intergenic (‑176/‑84) | yaiY ← / → yaiZ | inner membrane protein/DUF2754 domain‑containing protein YaiZ |
| RA | 417,022 | G→T | intergenic (‑70/‑120) | sbcD ← / → phoB | ATP dependent, structure specific DNA nuclease ‑ SbcD subunit/DNA‑binding transcriptional dual regulator PhoB |
| RA | 422,936 | A→G | E140G (GAA→GGA) | malZ → | maltodextrin glucosidase |
| RA | 423,601 | A→G | K362E (AAA→GAA) | malZ → | maltodextrin glucosidase |
| RA | 442,582 | Δ1 bp | coding (1034/1449 nt) | thiI → | tRNA uridine 4‑sulfurtransferase |
| RA | 450,631 | T→C | K4R (AAA→AGA) | cyoB ← | cytochrome bo3 ubiquinol oxidase subunit 1 |
| RA | 451,589 | Δ1 bp | coding (22/948 nt) | cyoA ← | cytochrome bo3 ubiquinol oxidase subunit 2 |
| RA | 453,644 | G→T | A175D (GCT→GAT) | yajG ← | putative lipoprotein YajG |
| RA | 461,311 | (T)7→8 | intergenic (+69/‑140) | lon → / → hupB | Lon protease/DNA‑binding protein HU‑beta |
| RA | 480,275 | A→G | L12L (TTA→CTA) | hha ← | hemolysin expression modulating protein |
| RA | 482,100 | C→T | V768V (GTG→GTA) | acrB ← | multidrug efflux pump RND permease AcrB |
| RA | 498,153 | C→T | S33S (AGC→AGT) | hemH → | ferrochelatase |
| RA | 498,947 | A→G | Y298C (TAT→TGT) | hemH → | ferrochelatase |
| RA | 504,712 | (T)5→4 | intergenic (‑16/‑202) | fsr ← / → ushA | fosmidomycin efflux pump/5'‑nucleotidase/UDP‑sugar hydrolase |
| RA | 508,288 | A→G | D24G (GAT→GGT) | ybaQ → | putative DNA‑binding transcriptional regulator YbaQ |
| RA | 515,325 | (C)5→4 | coding (449/918 nt) | qmcA ← | PHB domain‑containing protein |
| RA | 517,882 | G→A | A133V (GCC→GTC) | cnoX ← | chaperedoxin |
| RA | 525,638 | Δ1 bp | coding (2378/4281 nt) | rhsD → | protein RhsD |
| RA | 527,619 | (T)6→7 | coding (39/369 nt) | ybbC → | PF15631 family protein YbbC |
| RA | 537,409 | A→C | D275A (GAT→GCT) | glxR → | tartronate semialdehyde reductase 2 |
| RA | 538,029 | A→G | I133V (ATT→GTT) | ybbW → | putative allantoin transporter |
| RA | 539,434 | G→A | L96L (CTG→CTA) | allB → | allantoinase |
| RA | 553,240 | T→C | E234G (GAG→GGG) | lpxH ← | UDP‑2,3‑diacylglucosamine diphosphatase |
| RA | 558,897 | G→A | intergenic (+143/‑77) | sfmA → / → sfmC | putative fimbrial protein SfmA/putative fimbrial chaperone SfmC |
| RA | 559,088 | G→A | D39N (GAT→AAT) | sfmC → | putative fimbrial chaperone SfmC |
| RA | 560,244 | A→G | N183S (AAT→AGT) | sfmD → | putative fimbrial usher protein SfmD |
| RA | 563,890 | A→G | I197I (ATT→ATC) | fimZ ← | putative LuxR family transcriptional regulator FimZ |
| RA | 568,797 | T→C | Y35H (TAT→CAT) | ylcJ → | protein YlcJ |
| RA | 570,248 | A→G | L449L (TTA→TTG) | ybcK → | DLP12 prophage; putative recombinase |
| RA | 571,853 | Δ1 bp | coding (400/798 nt) | ybcM → | DLP12 prophage; putative DNA‑binding transcriptional regulator |
| RA | 577,009 | A→G | intergenic (‑184/‑389) | nmpC ← / → essD | DLP12 prophage; putative outer membrane porin NmpC/DLP12 prophage; putative phage lysis protein |
| RA | 582,267 | G→A | pseudogene (540/655 nt) | ybcY ← | DLP12 prophage; putative SAM‑dependent methyltransferase YbcY |
| RA | 598,000 | G→A | T174T (ACG→ACA) | cusB → | copper/silver export system membrane fusion protein |
| RA | 600,325 | A→G | T538A (ACC→GCC) | cusA → | copper/silver export system RND permease |
| RA | 601,907 | C→T | intergenic (+50/‑52) | cusA → / → pheP | copper/silver export system RND permease/phenylalanine:H(+) symporter PheP |
| RA | 610,876 | C→T | R540H (CGC→CAC) | fepA ← | ferric enterobactin outer membrane transporter |
| RA | 612,345 | A→G | V50V (GTT→GTC) | fepA ← | ferric enterobactin outer membrane transporter |
| RA | 612,670 | A→G | intergenic (‑176/‑67) | fepA ← / → fes | ferric enterobactin outer membrane transporter/enterochelin esterase |
| RA | 633,421 | T→C | P19P (CCA→CCG) | hcxA ← | hydroxycarboxylate dehydrogenase A |
| RA | 636,528 | T→C | E14E (GAA→GAG) | ybdN ← | putative PAPS reductase/DUF3440 domain‑containing protein YbdN |
| RA | 636,750 | G→A | S290F (TCC→TTC) | ybdO ← | putative LysR family DNA‑binding transcriptional regulator YbdO |
| RA | 653,615 | T→C | F461L (TTC→CTC) | dpiB → | sensory histidine kinase DpiB |
| RA | 654,745 | C→T | S408S (TCG→TCA) | dcuC ← | anaerobic C4‑dicarboxylate transporter DcuC |
| RA | 667,699 | G→A | T173T (ACC→ACT) | mrdA ← | peptidoglycan DD‑transpeptidase MrdA |
| RA | 689,114 | C→T | intergenic (‑101/+229) | insH‑3 ← / ← lnt | IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase |
| RA | 697,144 | (T)8→7 | intergenic (‑11/+369) | metT ← / ← asnB | tRNA‑Met/asparagine synthetase B |
| RA | 698,220 | C→T | D320N (GAT→AAT) | asnB ← | asparagine synthetase B |
| RA | 698,541 | G→T | R213S (CGT→AGT) | asnB ← | asparagine synthetase B |
| RA | 721,886 | (C)5→4 | coding (2529/2685 nt) | kdpD ← | sensory histidine kinase KdpD |
| RA | 723,868 | (G)5→4 | coding (547/2685 nt) | kdpD ← | sensory histidine kinase KdpD |
| RA | 728,334 | Δ1 bp | coding (399/1674 nt) | kdpA ← | K(+) transporting P‑type ATPase subunit KdpA |
| RA | 728,969 | Δ1 bp | intergenic (‑148/‑165) | kdpF ← / → ybfA | K(+) transporting P‑type ATPase subunit KdpF/DUF2517 domain‑containing protein YbfA |
| RA | 736,194 | A→G | E182G (GAA→GGA) | ybfC → | uncharacterized protein YbfC |
| RA | 742,314 | (C)5→4 | coding (243/1482 nt) | dtpD ← | dipeptide:H(+) symporter DtpD |
| RA | 750,915 | C→T | D419N (GAT→AAT) | ybgQ ← | putative fimbrial usher protein YbgQ |
| RA | 752,782 | (T)6→5 | coding (14/567 nt) | ybgD ← | putative fimbrial protein YbgD |
| RA | 753,415 | A→G | Y352H (TAC→CAC) | gltA ← | citrate synthase |
| RA | 785,304 | T→C | K5R (AAA→AGA) | ybgS ← | PF13985 family protein YbgS |
| RA | 797,736 | T→C | E232E (GAA→GAG) | ybhA ← | pyridoxal phosphate/fructose‑1,6‑bisphosphate phosphatase |
| RA | 819,067 | (T)7→8 | coding (20/246 nt) | moaD → | molybdopterin synthase sulfur carrier subunit |
| RA | 822,565 | G→A | P392L (CCG→CTG) | clsB ← | cardiolipin synthase B |
| RA | 842,838 | (T)5→4 | coding (507/927 nt) | rlmF → | 23S rRNA m(6)A1618 methyltransferase |
| RA | 850,566 | C→G | G39G (GGC→GGG) | ompX → | outer membrane protein X |
| RA | 855,832 | T→C | intergenic (‑88/‑131) | ldtB ← / → ybiT | L,D‑transpeptidase YbiS/ABC transporter ATP‑binding protein YbiT |
| RA | 857,021 | C→A | T353T (ACC→ACA) | ybiT → | ABC transporter ATP‑binding protein YbiT |
| RA | 868,422 | (C)8→7 | coding (903/1872 nt) | gsiA → | glutathione ABC transporter ATP binding subunit GsiA |
| RA | 868,871 | G→C | G451A (GGC→GCC) | gsiA → | glutathione ABC transporter ATP binding subunit GsiA |
| RA | 871,256 | C→T | P97L (CCA→CTA) | gsiC → | glutathione ABC transporter membrane subunit GsiC |
| RA | 878,719 | G→A | intergenic (+88/‑23) | bssR → / → yliI | regulator of biofilm formation/aldose sugar dehydrogenase YliI |
| RA | 881,661 | T→G | L312R (CTC→CGC) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase DacC |
| RA | 885,221 | T→C | K4E (AAA→GAA) | ybjH ← | uncharacterized protein YbjH |
| RA | 886,780 | A→G | I187T (ATT→ACT) | ybjJ ← | inner membrane protein YbjJ |
| RA | 894,965 | C→A | intergenic (+69/‑26) | potF → / → potG | putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATP binding subunit |
| RA | 900,736 | A→G | intergenic (‑161/+130) | artJ ← / ← artM | L‑arginine ABC transporter periplasmic binding protein/L‑arginine ABC transporter membrane subunit ArtM |
| RA | 903,830 | G→A | intergenic (‑96/+122) | artP ← / ← ybjP | L‑arginine ABC transporter ATP binding subunit/DUF3828 domain‑containing lipoprotein YbjP |
| RA | 907,393 | T→C | E297G (GAG→GGG) | ybjT ← | putative NAD(P)‑dependent oxidoreductase YbjT |
| RA | 911,171 | Δ1 bp | intergenic (‑122/+11) | poxB ← / ← hcr | pyruvate oxidase/NADH oxidoreductase |
| RA | 913,852 | Δ1 bp | intergenic (‑38/+106) | hcp ← / ← lysO | protein S‑nitrosylase/L‑lysine exporter |
| RA | 914,159 | T→C | E233E (GAA→GAG) | lysO ← | L‑lysine exporter |
| RA | 918,558 | C→A | C188F (TGT→TTT) | ybjX ← | DUF535 domain‑containing protein YbjX |
| RA | 919,229 | A→G | intergenic (‑109/‑6) | ybjX ← / → macA | DUF535 domain‑containing protein YbjX/ABC‑type tripartite efflux pump membrane fusion protein |
| RA | 922,079 | T→G | L578R (CTG→CGG) | macB → | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| RA | 923,356 | A→G | L31L (TTA→TTG) | clpA → | ATP‑dependent Clp protease ATP‑binding subunit ClpA |
| RA | 926,165 | (A)5→6 | intergenic (‑194/+60) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 930,073 | G→A | A297V (GCG→GTG) | cydD ← | glutathione/L‑cysteine ABC exporter subunit CydD |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 941,442 | T→G | S162A (TCT→GCT) | dmsA → | dimethyl sulfoxide reductase subunit A |
| RA | 947,296 | T→C | V23A (GTC→GCC) | ycaM → | putative transporter YcaM |
| RA | 949,466 | T→C | S35G (AGC→GGC) | ycaN ← | putative LysR‑type transcriptional regulator YcaN |
| RA | 966,010 | Δ1 bp | coding (1691/2265 nt) | ycaI → | conserved inner membrane protein YcaI |
| RA | 970,141 | C→T | I251I (ATC→ATT) | ycaQ → | winged helix DNA‑binding domain‑containing protein YcaQ |
| RA | 978,267 | G→A | E648K (GAA→AAA) | mukB → | chromosome partitioning protein MukB |
| RA | 981,907 | C→A | S287S (TCC→TCA) | ldtD → | L,D‑transpeptidase LdtD |
| RA | 984,036 | C→T | C129C (TGC→TGT) | gloC → | hydroxyacylglutathione hydrolase GloC |
| RA | 989,174 | G→A | H395Y (CAT→TAT) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 995,400 | A→G | W197R (TGG→CGG) | ssuD ← | FMNH2‑dependent alkanesulfonate monooxygenase |
| RA | 1,001,722 | Δ1 bp | coding (2507/2601 nt) | elfC → | putative fimbrial usher protein ElfC |
| RA | 1,019,171 | T→A | I295F (ATC→TTC) | ompA ← | outer membrane porin A |
| RA | 1,022,536 | C→T | A450T (GCC→ACC) | yccS ← | putative transporter YccS |
| RA | 1,034,437 | A→G | Y395C (TAC→TGC) | hyaB → | hydrogenase 1 large subunit |
| RA | 1,064,853 | A→T | D273V (GAT→GTT) | yccE → | uncharacterized protein YccE |
| RA | 1,065,263 | C→T | L410F (CTC→TTC) | yccE → | uncharacterized protein YccE |
| RA | 1,068,977 | C→G | G288A (GGC→GCC) | rutG ← | pyrimidine:H(+) symporter |
| RA | 1,070,763 | G→T | R65S (CGT→AGT) | rutE ← | putative malonic semialdehyde reductase |
| RA | 1,073,996 | Δ1 bp | coding (16/1149 nt) | rutA ← | pyrimidine oxygenase |
| RA | 1,083,432 | Δ1 bp | coding (57/1272 nt) | efeB → | heme‑containing peroxidase/deferrochelatase |
| RA | 1,087,850 | (T)5→4 | coding (2008/2019 nt) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine N‑deacetylase and beta‑1,6 glycoside hydrolase |
| RA | 1,088,564 | A→G | Y432H (TAT→CAT) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine N‑deacetylase and beta‑1,6 glycoside hydrolase |
| RA | 1,096,234 | C→G | P131R (CCG→CGG) | ycdU → | uncharacterized protein YcdU |
| RA | 1,100,298 | G→A | M1M (ATG→ATA) † | ycdZ → | putative inner membrane protein |
| RA | 1,101,867 | A→G | I87I (ATT→ATC) | csgF ← | curli assembly component |
| RA | 1,104,203 | A→G | T85A (ACA→GCA) | csgB → | curlin, minor subunit |
| RA | 1,105,096 | C→T | L46L (CTG→TTG) | csgC → | inhibitor of CsgA amyloid formation |
| RA | 1,108,581 | G→A | P121S (CCT→TCT) | opgC ← | protein required for succinyl modification of osmoregulated periplasmic glucans |
| RA | 1,114,355 | A→G | V379A (GTA→GCA) | mdtG ← | efflux pump MdtG |
| RA | 1,121,231 | (A)8→9 | intergenic (‑276/+11) | bssS ← / ← dinI | regulator of biofilm formation/DNA damage‑inducible protein I |
| RA | 1,123,388 | C→T | intergenic (‑115/+19) | yceB ← / ← grxB | putative lipid‑binding lipoprotein YceB/reduced glutaredoxin 2 |
| RA | 1,128,283 | G→T | A149S (GCG→TCG) | murJ → | putative lipid II flippase MurJ |
| RA | 1,131,502 | A→G | N22S (AAC→AGC) | flgC → | flagellar basal‑body rod protein FlgC |
| RA | 1,133,116 | (A)6→7 | coding (543/1209 nt) | flgE → | flagellar hook protein FlgE |
| RA | 1,135,222 | C→T | A165V (GCA→GTA) | flgG → | flagellar basal‑body rod protein FlgG |
| RA | 1,146,195 | T→C | E134G (GAG→GGG) | yceF ← | m(7)GTP pyrophosphatase |
| RA | 1,146,603 | (T)7→6 | noncoding (15/169 nt) | sraB → | small RNA SraB |
| RA | 1,150,676 | T→C | F3L (TTT→CTT) | fabG → | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase FabG |
| RA | 1,154,762 | (A)5→6 | coding (651/1023 nt) | mltG → | endolytic murein transglycosylase |
| RA | 1,157,840 | (A)7→8 | intergenic (+266/‑29) | ycfH → / → ptsG | putative metal‑dependent hydrolase YcfH/glucose‑specific PTS enzyme IIBC component |
| RA | 1,159,314 | T→G | intergenic (+12/+48) | ptsG → / ← fhuE | glucose‑specific PTS enzyme IIBC component/ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| RA | 1,163,982 | G→A | M241I (ATG→ATA) | thiK → | thiamine kinase |
| RA | 1,181,866 | (T)5→4 | coding (964/1047 nt) | potD ← | spermidine preferential ABC transporter periplasmic binding protein |
| RA | 1,182,497 | A→T | D111E (GAT→GAA) | potD ← | spermidine preferential ABC transporter periplasmic binding protein |
| RA | 1,182,642 | Δ1 bp | coding (188/1047 nt) | potD ← | spermidine preferential ABC transporter periplasmic binding protein |
| RA | 1,185,245 | (T)6→5 | coding (350/1137 nt) | potA ← | spermidine preferential ABC transporter ATP binding subunit |
| RA | 1,185,626 | Δ1 bp | intergenic (‑32/‑218) | potA ← / → pepT | spermidine preferential ABC transporter ATP binding subunit/peptidase T |
| RA | 1,191,441 | T→C | K182K (AAA→AAG) | purB ← | adenylosuccinate lyase |
| RA | 1,197,711 | Δ1 bp | coding (527/705 nt) | ymfE ← | e14 prophage; uncharacterized protein YmfE |
| RA | 1,209,596 | T→C | pseudogene (60/537 nt) | stfE ← | e14 prophage; putative side tail fiber protein fragment |
| RA | 1,212,088 | (C)8→7 | intergenic (‑85/+172) | iraM ← / ← ymgK | anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis/protein YmgK |
| RA | 1,212,376 | G→A | intergenic (‑72/+164) | ymgK ← / ← ymgL | protein YmgK/protein YmgL |
| RA | 1,214,175 | A→G | intergenic (‑116/+89) | bluR ← / ← bluF | DNA‑binding transcriptional repressor BluR/blue light‑responsive regulator of BluR |
| RA | 1,219,687 | T→C | pseudogene (87/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,220,871 | G→A | pseudogene (1271/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,224,226 | (A)5→4 | intergenic (+319/+53) | ycgI → / ← minE | protein YcgI/Z‑ring positioning protein MinE |
| RA | 1,229,560 | (T)7→8 | coding (835/912 nt) | hlyE ← | hemolysin E |
| RA | 1,230,433 | C→T | intergenic (‑39/‑334) | hlyE ← / → umuD | hemolysin E/DNA polymerase V protein UmuD |
| RA | 1,232,096 | A→G | Y304C (TAC→TGC) | umuC → | DNA polymerase V catalytic protein |
| RA | 1,242,167 | (T)7→8 | coding (914/915 nt) | ldcA ← | murein L,D‑carboxypeptidase |
| RA | 1,242,600 | C→T | G161R (GGG→AGG) | ldcA ← | murein L,D‑carboxypeptidase |
| RA | 1,245,163 | A→G | I2V (ATT→GTT) | ycgY → | uncharacterized protein YcgY |
| RA | 1,250,348 | G→T | A164E (GCG→GAG) | dhaK ← | dihydroxyacetone kinase subunit K |
| RA | 1,251,091 | Δ1 bp | coding (26/1920 nt) | dhaR → | DNA‑binding transcriptional dual regulator DhaR |
| RA | 1,253,815 | C→T | G713D (GGC→GAC) | ycgV ← | putative autotransporter adhesin YcgV |
| RA | 1,255,950 | Δ1 bp | coding (3/2868 nt) | ycgV ← | putative autotransporter adhesin YcgV |
| RA | 1,276,549 | T→A | D357V (GAT→GTT) | narX ← | sensory histidine kinase NarX |
| RA | 1,277,223 | G→C | A132A (GCC→GCG) | narX ← | sensory histidine kinase NarX |
| RA | 1,284,681 | T→C | S360P (TCT→CCT) | narH → | nitrate reductase A subunit beta |
| RA | 1,296,354 | C→T | A590T (GCG→ACG) | adhE ← | aldehyde‑alcohol dehydrogenase |
| RA | 1,296,554 | C→T | S523N (AGC→AAC) | adhE ← | aldehyde‑alcohol dehydrogenase |
| RA | 1,299,534 | T→C | F2L (TTT→CTT) | insH21 → | IS5 transposase and trans‑activator |
| RA | 1,302,297 | (A)6→7 | coding (1116/1632 nt) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,308,004 | C→A | V214V (GTG→GTT) | clsA ← | cardiolipin synthase A |
| RA | 1,308,572 | A→G | L25S (TTA→TCA) | clsA ← | cardiolipin synthase A |
| RA | 1,313,464 | A→G | V67A (GTT→GCT) | yciC ← | putative inner membrane protein |
| RA | 1,314,871 | (T)6→5 | coding (354/507 nt) | yciE ← | DUF892 domain‑containing protein YciE |
| RA | 1,320,045 | G→T | A447E (GCA→GAA) | trpD ← | anthranilate synthase subunit TrpD |
| RA | 1,322,638 | C→A | L103L (CTG→CTT) | trpE ← | anthranilate synthase subunit TrpE |
| RA | 1,323,360 | C→T | T47T (ACC→ACT) | yciV → | RNA/ssDNA 5'‑>3' exonuclease |
| RA | 1,323,906 | C→G | C229W (TGC→TGG) | yciV → | RNA/ssDNA 5'‑>3' exonuclease |
| RA | 1,328,943 | T→C | N57S (AAC→AGC) | yciK ← | putative oxidoreductase |
| RA | 1,333,096 | T→C | C683C (TGT→TGC) | topA → | DNA topoisomerase 1 |
| RA | 1,336,311 | A→G | K161E (AAA→GAA) | acnA → | aconitate hydratase 1 |
| RA | 1,347,878 | T→C | Q345Q (CAA→CAG) | rnb ← | RNase II |
| RA | 1,354,481 | G→C | P13R (CCG→CGG) | sapC ← | putrescine ABC exporter membrane protein SapC |
| RA | 1,357,678 | Δ1 bp | intergenic (‑10/+124) | ymjA ← / ← puuP | DUF2543 domain‑containing protein YmjA/putrescine:H(+) symporter PuuP |
| RA | 1,365,665 | Δ1 bp | coding (116/1266 nt) | puuE → | 4‑aminobutyrate aminotransferase PuuE |
| RA | 1,373,895 | C→T | T225I (ACA→ATA) | ycjO → | putative ABC transporter membrane subunit YcjO |
| RA | 1,374,259 | A→G | E57G (GAG→GGG) | ycjP → | putative ABC transporter membrane subunit YcjP |
| RA | 1,382,077 | Δ1 bp | coding (131/906 nt) | ompG → | outer membrane porin G |
| RA | 1,399,433 | A→G | F32L (TTC→CTC) | fnr ← | DNA‑binding transcriptional dual regulator FNR |
| RA | 1,402,336 | Δ1 bp | coding (920/1446 nt) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase subunit B |
| RA | 1,405,809 | A→G | intergenic (‑58/‑170) | mcaS ← / → smrA | small regulatory RNA McaS/DNA endonuclease SmrA |
| RA | 1,413,532 | T→A | *70L (TAA→TTA) | rcbA ← | Rac prophage; double‑strand break reduction protein |
| RA | 1,418,086 | (T)5→6 | coding (144/222 nt) | kilR ← | Rac prophage; inhibitor of FtsZ, killing protein |
| RA | 1,418,441 | (A)7→8 | intergenic (‑212/‑230) | kilR ← / → sieB | Rac prophage; inhibitor of FtsZ, killing protein/Rac prophage; phage superinfection exclusion protein |
| RA | 1,423,242 | G→A | G164E (GGG→GAG) | ydaW → | Rac prophage; putative uncharacterized protein YdaW |
| RA | 1,425,909 | A→C | I97L (ATC→CTC) | ydaY → | Rac prophage; putative uncharacterized protein YdaY |
| RA | 1,426,461 | A→C | E3A (GAG→GCG) | ynaA → | Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA |
| RA | 1,428,030 | C→G | A233P (GCC→CCC) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,435,687 | T→C | intergenic (‑68/+73) | uspF ← / ← ompN | nucleotide binding filament protein/outer membrane porin N |
| RA | 1,435,732 | (A)5→4 | intergenic (‑113/+28) | uspF ← / ← ompN | nucleotide binding filament protein/outer membrane porin N |
| RA | 1,437,807 | C→T | C993Y (TGC→TAC) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,439,716 | Δ1 bp | coding (1069/3525 nt) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,452,256 | G→A | H463Y (CAT→TAT) | paaZ ← | oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,471,263 | G→A | pseudogene (745/3495 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| RA | 1,474,105 | C→T | intergenic (+92/‑116) | ydbA → / → pdxI | putative outer membrane protein, N‑terminal fragment/pyridoxine 4‑dehydrogenase |
| RA | 1,476,628 | (A)6→5 | coding (1485/2307 nt) | ydbD → | DUF2773 domain‑containing protein YdbD |
| RA | 1,476,830 | T→C | Y563H (TAT→CAT) | ydbD → | DUF2773 domain‑containing protein YdbD |
| RA | 1,481,929 | (T)5→4 | coding (1021/1293 nt) | ynbD → | putative phosphatase |
| RA | 1,490,954 | (T)5→4 | coding (53/531 nt) | cybB → | cytochrome b561 |
| RA | 1,496,850 | Δ1 bp | intergenic (+219/‑6) | ydcJ → / → opgD | DUF1338 domain‑containing protein YdcJ/glucan biosynthesis protein D |
| RA | 1,497,760 | A→C | D302A (GAT→GCT) | opgD → | glucan biosynthesis protein D |
| RA | 1,498,595 | T→C | intergenic (+84/‑56) | opgD → / → ydcH | glucan biosynthesis protein D/protein YdcH |
| RA | 1,508,541 | T→A | N587K (AAT→AAA) | rlhA → | 23S rRNA 5‑hydroxycytidine C2501 synthase |
| RA | 1,512,246 | T→G | V198G (GTT→GGT) | ydcS → | putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase |
| RA | 1,519,032 | Δ1 bp | coding (6/1038 nt) | curA → | NADPH‑dependent curcumin/dihydrocurcumin reductase |
| RA | 1,520,982 | A→G | I695T (ATT→ACT) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,526,837 | Δ1 bp | coding (591/618 nt) | yncG → | putative glutathione S‑transferase YncG |
| RA | 1,530,413 | A→G | V31A (GTG→GCG) | yncO ← | protein YncO |
| RA | 1,533,437 | A→G | Y139H (TAC→CAC) | yddH ← | flavin reductase‑like protein YddH |
| RA | 1,539,749 | C→T | A948T (GCC→ACC) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,551,332 | A→C | D291A (GAT→GCT) | fdnH → | formate dehydrogenase N subunit beta |
| RA | 1,566,656 | G→A | A162V (GCC→GTC) | dosC ← | diguanylate cyclase DosC |
| RA | 1,575,336 | T→G | S762R (AGC→CGC) | yddB ← | putative TonB‑dependent receptor |
| RA | 1,578,871 | A→G | F158L (TTC→CTC) | yddA ← | ABC transporter family protein YddA |
| RA | 1,582,643 | (A)6→5 | intergenic (‑119/+283) | ydeN ← / ← ydeO | putative sulfatase/DNA‑binding transcriptional dual regulator YdeO |
| RA | 1,585,441 | G→C | A349G (GCC→GGC) | ydeP ← | putative oxidoreductase YdeP |
| RA | 1,587,692 | G→A | L15F (CTT→TTT) | ydeQ ← | putative fimbrial adhesin protein YdeQ |
| RA | 1,589,322 | G→T | A227D (GCT→GAT) | ydeT ← | fimbrial usher domain‑containing protein YdeT |
| RA | 1,600,726 | A→G | I172I (ATT→ATC) | lsrR ← | DNA‑binding transcriptional repressor LsrR |
| RA | 1,601,831 | (A)7→6 | coding (342/1536 nt) | lsrA → | Autoinducer‑2 ABC transporter ATP binding subunit |
| RA | 1,607,828 | C→T | G161G (GGC→GGT) | tam → | trans‑aconitate 2‑methyltransferase |
| RA | 1,610,589 | A→G | V31A (GTT→GCT) | uxaB ← | tagaturonate reductase |
| RA | 1,625,849 | T→C | H511R (CAT→CGT) | dcp ← | peptidyl‑dipeptidase Dcp |
| RA | 1,637,304 | C→T | I86I (ATC→ATT) | ydfO → | Qin prophage; protein YdfO |
| RA | 1,637,726 | (T)8→7 | coding (57/174 nt) | gnsB ← | Qin prophage; protein GnsB |
| RA | 1,655,112 | A→G | V10V (GTT→GTC) | rspA ← | mandelate racemase/muconate lactonizing enzyme family protein RspA |
| RA | 1,658,706 | G→C | G213A (GGC→GCC) | ynfE → | putative selenate reductase YnfE |
| RA | 1,658,730 | Δ1 bp | coding (662/2427 nt) | ynfE → | putative selenate reductase YnfE |
| RA | 1,667,359 | A→G | R402R (CGT→CGC) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,680,663 | C→T | P369P (CCC→CCT) | ydgI → | putative arginine:ornithine antiporter |
| RA | 1,682,286 | G→A | R43Q (CGA→CAA) | rstA → | DNA‑binding transcriptional regulator RstA |
| RA | 1,682,673 | A→G | E172G (GAA→GGA) | rstA → | DNA‑binding transcriptional regulator RstA |
| RA | 1,688,632 | G→A | L19L (TTG→TTA) | manA → | mannose‑6‑phosphate isomerase |
| RA | 1,706,464 | A→T | K39N (AAA→AAT) | rsxB → | SoxR [2Fe‑2S] reducing system protein RsxB |
| RA | 1,709,108 | (A)6→5 | coding (2190/2223 nt) | rsxC → | SoxR [2Fe‑2S] reducing system protein RsxC |
| RA | 1,718,381 | T→C | K5K (AAA→AAG) | mliC ← | inhibitor of c‑type lysozyme, putative lipoprotein |
| RA | 1,719,889 | T→C | V5A (GTA→GCA) | slyB → | outer membrane lipoprotein SlyB |
| RA | 1,734,304 | (T)7→6 | intergenic (‑203/‑131) | grxD ← / → mepH | glutaredoxin 4/peptidoglycan DD‑endopeptidase MepH |
| RA | 1,739,579 | (T)7→6 | coding (220/933 nt) | ydhB ← | putative LysR family DNA‑binding transcriptional regulator YdhB |
| RA | 1,740,391 | G→T | A161S (GCG→TCG) | ydhC → | putative transporter YdhC |
| RA | 1,747,237 | A→G | D36G (GAC→GGC) | ydhS → | FAD/NAD(P) binding domain‑containing protein YdhS |
| RA | 1,750,974 | T→A | T14S (ACA→TCA) | ydhX ← | putative 4Fe‑4S ferredoxin‑type protein |
| RA | 1,756,051 | T→C | S118S (TCT→TCC) | pykF → | pyruvate kinase I |
| RA | 1,756,965 | T→A | I423N (ATC→AAC) | pykF → | pyruvate kinase I |
| RA | 1,757,817 | G→A | S303S (AGC→AGT) | ldtE ← | L,D‑transpeptidase LdtE |
| RA | 1,770,149 | T→G | L359R (CTC→CGC) | ydiK → | putative transporter YdiK |
| RA | 1,772,241 | (A)7→6 | coding (1171/1215 nt) | ydiM → | putative exporter YdiM |
| RA | 1,774,321 | T→C | V178A (GTC→GCC) | ydiB → | shikimate dehydrogenase/quinate dehydrogenase |
| RA | 1,779,226 | C→T | A26T (GCA→ACA) | ydiP ← | putative DNA‑binding transcriptional regulator YdiP |
| RA | 1,779,491 | (T)8→9 | intergenic (‑190/‑126) | ydiP ← / → ydiQ | putative DNA‑binding transcriptional regulator YdiP/putative electron transfer flavoprotein subunit YdiQ |
| RA | 1,781,876 | G→A | G161D (GGC→GAC) | ydiS → | putative oxidoreductase with FAD/NAD(P)‑binding domain |
| RA | 1,787,109 | A→G | S2P (TCC→CCC) | ppsA ← | phosphoenolpyruvate synthetase |
| RA | 1,790,524 | Δ1 bp | coding (721/1437 nt) | ydiU ← | UPF0061 family protein YdiU |
| RA | 1,791,609 | Δ1 bp | coding (412/714 nt) | ydiV ← | anti‑FlhDC factor |
| RA | 1,796,866 | T→C | Y360C (TAT→TGT) | pheT ← | phenylalanine‑‑tRNA ligase subunit beta |
| RA | 1,799,179 | Δ1 bp | intergenic (‑237/+47) | pheS ← / ← pheM | phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide |
| RA | 1,807,314 | (C)5→4 | intergenic (+15/‑86) | pfkB → / → ydiZ | 6‑phosphofructokinase II/protein YdiZ |
| RA | 1,807,754 | G→T | intergenic (+64/‑42) | ydiZ → / → yniA | protein YdiZ/putative kinase YniA |
| RA | 1,809,987 | T→C | V203A (GTA→GCA) | hxpB → | hexitol phosphatase B |
| RA | 1,812,996 | C→T | C46Y (TGC→TAC) | ydjO ← | protein YdjO |
| RA | 1,821,720 | (T)7→6 | intergenic (‑101/+198) | chbB ← / ← osmE | N,N'‑diacetylchitobiose‑specific PTS enzyme IIB component/osmotically‑inducible lipoprotein OsmE |
| RA | 1,830,943 | T→C | Y347C (TAC→TGC) | astC ← | succinylornithine transaminase |
| RA | 1,832,618 | G→C | G64A (GGC→GCC) | xthA → | exodeoxyribonuclease III |
| RA | 1,836,555 | T→C | V161V (GTT→GTC) | ynjB → | putative ABC transporter periplasmic binding protein YnjB |
| RA | 1,838,080 | (T)7→8 | coding (869/1536 nt) | ynjC → | putative ABC transporter membrane subunit YnjC |
| RA | 1,844,593 | (T)7→8 | coding (279/1041 nt) | ynjI ← | DUF1266 domain‑containing protein YnjI |
| RA | 1,846,373 | T→C | G196G (GGA→GGG) | topB ← | DNA topoisomerase III |
| RA | 1,868,114 | T→C | Y403H (TAT→CAT) | yeaG → | protein kinase YeaG |
| RA | 1,877,005 | (A)7→8 | coding (97/348 nt) | yeaO → | conserved protein YeaO |
| RA | 1,878,986 | A→G | intergenic (+38/+21) | yoaJ → / ← yeaQ | uncharacterized protein YoaJ/PF04226 family protein YeaQ |
| RA | 1,879,362 | (T)8→9 | intergenic (‑107/+41) | yeaQ ← / ← yoaG | PF04226 family protein YeaQ/DUF1869 domain‑containing protein YoaG |
| RA | 1,915,177 | (T)6→5 | coding (358/699 nt) | proQ ← | RNA chaperone ProQ |
| RA | 1,925,648 | G→A | C70Y (TGT→TAT) | yobB → | putative carbon‑nitrogen hydrolase family protein YobB |
| RA | 1,928,777 | A→G | D21D (GAT→GAC) | ptrB ← | oligopeptidase B |
| RA | 1,931,057 | T→C | I59I (ATT→ATC) | purT → | phosphoribosylglycinamide formyltransferase 2 |
| RA | 1,936,174 | G→T | G47G (GGC→GGA) | zwf ← | NADP(+)‑dependent glucose‑6‑phosphate dehydrogenase |
| RA | 1,936,532 | (A)8→7 | intergenic (‑218/‑120) | zwf ← / → yebK | NADP(+)‑dependent glucose‑6‑phosphate dehydrogenase/DNA‑binding transcriptional repressor YebK |
| RA | 1,945,629 | A→G | I116I (ATT→ATC) | ruvA ← | Holliday junction branch migration complex subunit RuvA |
| RA | 1,946,197 | (A)6→5 | intergenic (‑17/‑54) | yobI ← / → yebB | uncharacterized protein YobI/putative papain‑like amidase YebB |
| RA | 1,957,676 | Δ1 bp | coding (457/1101 nt) | torY ← | cytochrome c quinol dehydrogenase TorY |
| RA | 1,958,445 | A→C | noncoding (76/80 nt) | micL ← | small regulatory RNA MicL‑S |
| RA | 1,962,324 | T→C | V118A (GTT→GCT) | yecT → | protein YecT |
| RA | 1,968,362 | T→C | K47R (AAA→AGA) | cheB ← | protein‑glutamate methylesterase/protein glutamine deamidase |
| RA | 1,977,328 | A→G | S173P (TCC→CCC) | flhC ← | DNA‑binding transcriptional dual regulator FlhC |
| RA | 1,978,270 | Δ1 bp | intergenic (‑73/+248) | flhD ← / ← insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| RA | 1,986,350 | T→C | intergenic (‑222/‑575) | araF ← / → ftnB | arabinose ABC transporter periplasmic binding protein/putative ferritin‑like protein |
| RA | 1,993,117 | G→A | I530I (ATC→ATT) | uvrC ← | excision nuclease subunit C |
| RA | 1,995,681 | T→C | Y9Y (TAT→TAC) | yecU → | protein YecU |
| RA | 1,995,748 | C→G | L32V (CTT→GTT) | yecU → | protein YecU |
| RA | 1,996,608 | G→A | N75N (AAC→AAT) | sdiA ← | DNA‑binding transcriptional dual regulator SdiA |
| RA | 1,996,850 | +C | intergenic (‑18/‑71) | sdiA ← / → sdsN | DNA‑binding transcriptional dual regulator SdiA/small regulatory RNA SdsN |
| RA | 2,005,021 | (A)7→6 | coding (1150/1407 nt) | fliD → | flagellar filament capping protein |
| RA | 2,005,669 | A→G | K123E (AAA→GAA) | fliS → | flagellar biosynthesis protein FliS |
| RA | 2,007,153 | C→T | T333I (ACC→ATC) | amyA → | alpha‑amylase |
| RA | 2,015,409 | A→G | E177G (GAA→GGA) | fliG → | flagellar motor switch protein FliG |
| RA | 2,020,349 | Δ1 bp | coding (263/1005 nt) | fliM → | flagellar motor switch protein FliM |
| RA | 2,024,312 | T→C | D115D (GAT→GAC) | rcsA → | DNA‑binding transcriptional activator RcsA |
| RA | 2,032,811 | T→G | E90A (GAG→GCG) | yedJ ← | putative HD superfamily phosphohydrolase YedJ |
| RA | 2,033,447 | C→T | S13N (AGT→AAT) | yedR ← | putative inner membrane protein |
| RA | 2,037,115 | T→C | K346K (AAA→AAG) | hprS ← | sensory histidine kinase HprS |
| RA | 2,044,771 | Δ1 bp | intergenic (+147/‑167) | asnT → / → yeeJ | tRNA‑Asn/inverse autotransporter adhesin |
| RA | 2,052,779 | G→A | pseudogene (550/1053 nt) | yeeL ← | putative glycosyltransferase, N‑terminal fragment |
| RA | 2,076,083 | T→C | N435N (AAT→AAC) | yeeR → | CP4‑44 prophage; inner membrane protein YeeR |
| RA | 2,077,132 | G→A | G7G (GGG→GGA) | cbeA → | CP4‑44 prophage; cytoskeleton bundling‑enhancing antitoxin CbeA |
| RA | 2,080,670 | G→A | intergenic (‑79/+119) | yeeA ← / ← sbmC | putative transporter YeeA/DNA gyrase inhibitor |
| RA | 2,087,287 | (G)7→6 | intergenic (‑173/+42) | yoeI ← / ← yeeY | uncharacterized protein YoeI/putative DNA‑binding transcriptional regulator YeeY |
| RA | 2,088,440 | A→T | L230* (TTA→TAA) | yeeZ ← | putative epimerase YeeZ |
| RA | 2,103,378 | T→C | pseudogene (12/446 nt) | wbbL ← | interrupted rhamnosyltransferase WbbL |
| RA | 2,105,921 | C→T | R46K (AGA→AAA) | wbbI ← | beta‑1,6‑galactofuranosyltransferase |
| RA | 2,107,809 | C→T | R174K (AGA→AAA) | glf ← | UDP‑galactopyranose mutase |
| RA | 2,113,482 | T→C | K282K (AAA→AAG) | galF ← | UTP:glucose‑1‑phosphate uridylyltransferase, low activity |
| RA | 2,137,560 | T→C | intergenic (‑317/‑342) | wza ← / → yegH | outer membrane polysaccharide export protein Wza/inner membrane protein YegH |
| RA | 2,150,118 | G→A | P290S (CCG→TCG) | yegI ← | protein kinase YegI |
| RA | 2,150,632 | Δ1 bp | coding (354/1947 nt) | yegI ← | protein kinase YegI |
| RA | 2,158,165 | T→C | I968T (ATC→ACC) | mdtB → | multidrug efflux pump RND permease subunit MdtB |
| RA | 2,161,778 | C→T | R105R (CGC→CGT) | mdtD → | putative multidrug efflux pump MdtD |
| RA | 2,162,642 | G→A | L393L (CTG→CTA) | mdtD → | putative multidrug efflux pump MdtD |
| RA | 2,177,022 | A→C | N61K (AAT→AAG) | gatY ← | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY |
| RA | 2,183,325 | Δ1 bp | coding (327/819 nt) | yegX ← | putative hydrolase |
| RA | 2,188,961 | A→G | V650V (GTT→GTC) | yehB ← | putative fimbrial usher protein YehB |
| RA | 2,191,691 | C→T | A178T (GCG→ACG) | yehD ← | putative fimbrial protein YehD |
| RA | 2,197,865 | C→A | intergenic (+567/‑2414) | yehF → / → yehI | putative protein YehF/DUF4132 domain‑containing protein YehI |
| RA | 2,201,740 | (A)6→7 | coding (1462/3633 nt) | yehI → | DUF4132 domain‑containing protein YehI |
| RA | 2,209,997 | T→C | L300L (TTA→CTA) | yehQ → | SWIM zinc finger domains‑containing protein YehQ |
| RA | 2,221,701 | T→C | M97V (ATG→GTG) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,225,698 | (T)6→5 | intergenic (‑67/‑103) | yohC ← / → yohD | putative inner membrane protein/DedA family protein YohD |
| RA | 2,229,029 | A→G | L16L (CTA→CTG) | yohP → | putative membrane protein YohP |
| RA | 2,229,186 | C→G | intergenic (+121/+252) | yohP → / ← dusC | putative membrane protein YohP/tRNA‑dihydrouridine(16) synthase |
| RA | 2,230,551 | T→C | intergenic (‑166/‑73) | dusC ← / → yohJ | tRNA‑dihydrouridine(16) synthase/PF03788 family membrane protein YohJ |
| RA | 2,233,561 | A→G | E228E (GAA→GAG) | sanA → | DUF218 domain‑containing protein SanA |
| RA | 2,250,824 | T→C | intergenic (+58/‑16) | yeiH → / → nfo | conserved inner membrane protein YeiH/endonuclease IV |
| RA | 2,256,613 | (T)5→4 | coding (723/1251 nt) | psuT ← | putative pseudouridine transporter |
| RA | 2,259,134 | T→A | N55Y (AAC→TAC) | psuK ← | putative pseudouridine kinase |
| RA | 2,260,779 | T→C | K211R (AAA→AGA) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| RA | 2,263,837 | T→C | intergenic (‑342/‑26) | fruB ← / → setB | fructose‑specific PTS multiphosphoryl transfer protein FruB/sugar exporter SetB |
| RA | 2,269,575 | T→C | intergenic (+8/‑404) | lpxT → / → mepS | Kdo2‑lipid A phosphotransferase/peptidoglycan DD‑endopeptidase/peptidoglycan LD‑carboxypeptidase |
| RA | 2,273,494 | (A)6→5 | coding (1131/1815 nt) | yejA → | putative oligopeptide ABC transporter periplasmic binding protein |
| RA | 2,284,750 | C→T | N125N (AAC→AAT) | yejM → | putative cardiolipin transport protein |
| RA | 2,285,152 | Δ1 bp | coding (777/1761 nt) | yejM → | putative cardiolipin transport protein |
| RA | 2,310,170 | Δ1 bp | coding (236/1065 nt) | ada ← | DNA‑binding transcriptional dual regulator/DNA repair protein Ada |
| RA | 2,312,788 | (T)6→7 | intergenic (‑39/‑296) | ompC ← / → micF | outer membrane porin C/small regulatory RNA MicF |
| RA | 2,313,525 | C→T | S13L (TCA→TTA) | rcsD → | RcsD phosphotransferase |
| RA | 2,328,408 | (T)7→8 | coding (1390/1650 nt) | yfaQ ← | tandem DUF2300 domain‑containing protein YfaQ |
| RA | 2,329,692 | G→A | L36L (CTG→TTG) | yfaQ ← | tandem DUF2300 domain‑containing protein YfaQ |
| RA | 2,342,381 | C→T | V597I (GTT→ATT) | yfaL ← | putative autotransporter adhesin YfaL |
| RA | 2,349,465 | A→G | V3A (GTT→GCT) | inaA ← | putative lipopolysaccharide kinase InaA |
| RA | 2,354,944 | C→T | A227V (GCC→GTC) | glpB → | anaerobic glycerol‑3‑phosphate dehydrogenase subunit B |
| RA | 2,355,061 | T→C | F266S (TTT→TCT) | glpB → | anaerobic glycerol‑3‑phosphate dehydrogenase subunit B |
| RA | 2,359,162 | C→T | A331T (GCG→ACG) | yfaV ← | putative transporter YfaV |
| RA | 2,360,846 | (C)5→4 | coding (569/1206 nt) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,364,390 | T→C | intergenic (‑115/‑164) | yfaZ ← / → nudI | putative porin YfaZ/pyrimidine deoxynucleotide diphosphatase NudI |
| RA | 2,372,742 | G→C | P62P (CCG→CCC) | arnE → | undecaprenyl‑phosphate‑alpha‑L‑Ara4N flippase ‑ ArnE subunit |
| RA | 2,382,824 | (A)8→9 | coding (112/1212 nt) | elaD → | protease ElaD |
| RA | 2,384,163 | T→C | V520V (GTA→GTG) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,386,436 | G→A | A193T (GCA→ACA) | yfbL → | putative peptidase YfbL |
| RA | 2,403,762 | +A | coding (84/1791 nt) | nuoC ← | NADH:quinone oxidoreductase subunit CD |
| RA | 2,443,666 | Δ1 bp | coding (1903/2007 nt) | mnmC → | fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,449,154 | +C | coding (549/552 nt) | smrB → | putative endonuclease SmrB |
| RA | 2,449,191 | G→A | intergenic (+34/+37) | smrB → / ← yfcO | putative endonuclease SmrB/DUF2544 domain‑containing protein YfcO |
| RA | 2,450,781 | T→C | T99A (ACT→GCT) | yfcQ ← | putative fimbrial protein YfcQ |
| RA | 2,451,016 | A→G | D20D (GAT→GAC) | yfcQ ← | putative fimbrial protein YfcQ |
| RA | 2,451,787 | C→T | A184T (GCC→ACC) | yfcS ← | putative fimbrial chaperone YfcS |
| RA | 2,454,066 | Δ1 bp | pseudogene (936/2646 nt) | yfcU ← | putative outer membrane usher protein YfcU |
| RA | 2,479,522 | (A)6→5 | coding (321/1329 nt) | dsdA → | D‑serine ammonia‑lyase |
| RA | 2,483,224 | A→G | L39S (TTA→TCA) | emrK ← | tripartite efflux pump membrane fusion protein EmrK |
| RA | 2,483,477 | (A)8→7 | intergenic (‑138/‑278) | emrK ← / → evgA | tripartite efflux pump membrane fusion protein EmrK/DNA‑binding transcriptional activator EvgA |
| RA | 2,489,635 | G→A | I184I (ATC→ATT) | yfdV ← | putative transport protein YfdV |
| RA | 2,496,582 | T→C | intergenic (+17/‑339) | lpxP → / → ypdK | palmitoleoyl acyltransferase/putative membrane protein YpdK |
| RA | 2,498,376 | T→C | intergenic (‑81/‑295) | alaC ← / → ypdA | glutamate‑‑pyruvate aminotransferase AlaC/sensory histidine kinase YpdA |
| RA | 2,498,790 | C→T | H40H (CAC→CAT) | ypdA → | sensory histidine kinase YpdA |
| RA | 2,507,885 | (T)6→5 | coding (10/1248 nt) | fryC ← | putative PTS enzyme IIC component FryC |
| RA | 2,517,367 | (A)5→4 | coding (466/2190 nt) | pdeA ← | putative c‑di‑GMP phosphodiesterase PdeA |
| RA | 2,520,945 | G→A | noncoding (15/76 nt) | valU → | tRNA‑Val |
| RA | 2,524,504 | (C)5→4 | coding (375/834 nt) | xapA ← | xanthosine phosphorylase |
| RA | 2,532,981 | C→T | G191G (GGC→GGT) | cysK → | O‑acetylserine sulfhydrylase A |
| RA | 2,537,453 | C→A | Q38K (CAG→AAG) | yfeK → | protein YfeK |
| RA | 2,563,530 | Δ1 bp | intergenic (+413/‑62) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein YffP/CPZ‑55 prophage; uncharacterized protein YffQ |
| RA | 2,573,016 | +A | coding (490/1017 nt) | eutD ← | phosphate acetyltransferase EutD |
| RA | 2,575,156 | G→T | T101K (ACG→AAG) | eutP ← | putative ethanolamine utilization protein EutP with nucleoside triphosphate hydrolase domain |
| RA | 2,575,179 | C→T | R93R (CGG→CGA) | eutP ← | putative ethanolamine utilization protein EutP with nucleoside triphosphate hydrolase domain |
| RA | 2,575,913 | G→A | intergenic (‑108/+185) | eutS ← / ← maeB | putative structural protein, ethanolamine utilization microcompartment/malate dehydrogenase |
| RA | 2,579,419 | C→T | Q252* (CAG→TAG) | talA → | transaldolase A |
| RA | 2,582,677 | G→A | T34I (ACC→ATC) | ypfG ← | DUF1176 domain‑containing protein YpfG |
| RA | 2,592,892 | (C)5→6 | coding (131/201 nt) | ypfN → | UPF0370 protein YpfN |
| RA | 2,595,512 | A→G | P116P (CCT→CCC) | tmcA ← | tRNA(Met) cytidine acetyltransferase |
| RA | 2,601,519 | G→A | A107T (GCC→ACC) | hyfA → | hydrogenase 4 component A |
| RA | 2,602,017 | (C)7→8 | coding (200/2019 nt) | hyfB → | hydrogenase 4 component B |
| RA | 2,602,223 | (T)5→4 | coding (406/2019 nt) | hyfB → | hydrogenase 4 component B |
| RA | 2,607,268 | T→C | F118L (TTC→CTC) | hyfF → | hydrogenase 4 component F |
| RA | 2,611,931 | Δ1 bp | coding (32/2013 nt) | hyfR → | DNA‑binding transcriptional activator HyfR |
| RA | 2,629,977 | C→T | N62N (AAC→AAT) | yfgH → | lipoprotein YfgH |
| RA | 2,632,630 | A→G | S481P (TCC→CCC) | guaB ← | inosine 5'‑monophosphate dehydrogenase |
| RA | 2,637,925 | C→A | R243L (CGT→CTT) | bamB ← | outer membrane protein assembly factor BamB |
| RA | 2,638,044 | Δ1 bp | coding (609/1179 nt) | bamB ← | outer membrane protein assembly factor BamB |
| RA | 2,644,487 | A→C | A126A (GCT→GCG) | ndk ← | nucleoside diphosphate kinase |
| RA | 2,645,045 | G→A | Q761* (CAA→TAA) | pbpC ← | peptidoglycan glycosyltransferase PbpC |
| RA | 2,645,776 | C→T | G517D (GGC→GAC) | pbpC ← | peptidoglycan glycosyltransferase PbpC |
| RA | 2,648,666 | C→A | A1208S (GCG→TCG) | yfhM ← | alpha2‑macroglobulin |
| RA | 2,651,972 | (T)7→8 | coding (316/4962 nt) | yfhM ← | alpha2‑macroglobulin |
| RA | 2,672,278 | G→A | G78S (GGT→AGT) | hcaD → | putative 3‑phenylpropionate/cinnamate dioxygenase ferredoxin reductase subunit |
| RA | 2,693,373 | G→C | A724G (GCC→GGC) | purL ← | phosphoribosylformylglycinamide synthetase |
| RA | 2,693,446 | G→A | R700C (CGT→TGT) | purL ← | phosphoribosylformylglycinamide synthetase |
| RA | 2,717,817 | C→T | A238T (GCG→ACG) | yfiF ← | putative methyltransferase |
| RA | 2,731,100 | G→T | noncoding (58/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 2,733,607 | A→G | R189R (CGT→CGC) | clpB ← | ClpB chaperone |
| JC JC | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| RA | 2,738,716 | T→C | I324I (ATT→ATC) | pheA → | fused chorismate mutase/prephenate dehydratase |
| RA | 2,744,349 | A→G | V61A (GTT→GCT) | rplS ← | 50S ribosomal subunit protein L19 |
| RA | 2,753,649 | G→A | M15I (ATG→ATA) | bamE → | outer membrane protein assembly factor BamE |
| RA | 2,755,418 | C→A | intergenic (+40/‑175) | smpB → / → ssrA | SsrA‑binding protein/tmRNA |
| RA | 2,759,898 | G→A | C305Y (TGC→TAC) | yfjI → | CP4‑57 prophage; protein YfjI |
| RA | 2,763,813 | T→C | E447E (GAA→GAG) | abpA ← | CP4‑57 prophage; anti‑bacteriophage protein |
| RA | 2,763,869 | (T)7→9 | coding (1285/1617 nt) | abpA ← | CP4‑57 prophage; anti‑bacteriophage protein |
| RA | 2,766,859 | (T)7→8 | coding (942/1074 nt) | rnlA → | CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system |
| RA | 2,771,880 | (T)5→4 | coding (275/315 nt) | yfjU ← | CP4‑57 prophage; ArsC family protein YfjU |
| RA | 2,773,272 | C→A | intergenic (‑90/‑46) | yfjV ← / → yfjW | CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment/CP4‑57 prophage; uncharacterized protein YfjW |
| RA | 2,773,549 | T→C | S78P (TCT→CCT) | yfjW → | CP4‑57 prophage; uncharacterized protein YfjW |
| RA | 2,780,268 | T→C | Q820R (CAA→CGA) | ypjA ← | adhesin‑like autotransporter YpjA |
| RA | 2,783,986 | C→T | L148L (TTG→TTA) | ypjB ← | DUF5508 domain‑containing protein YpjB |
| RA | 2,786,329 | T→C | intergenic (‑492/‑68) | ileY ← / → ygaQ | tRNA‑Ile/putative uncharacterized protein YgaQ |
| RA | 2,787,520 | C→T | pseudogene (1124/2253 nt) | ygaQ → | putative uncharacterized protein YgaQ |
| RA | 2,796,579 | T→C | I70V (ATC→GTC) | kbp ← | K(+) binding protein |
| RA | 2,797,709 | T→C | C64R (TGC→CGC) | ygaP → | thiosulfate sulfurtransferase YgaP |
| RA | 2,806,414 | C→T | A135A (GCC→GCT) | proW → | glycine betaine ABC transporter membrane subunit ProW |
| RA | 2,814,420 | T→C | K105R (AAA→AGA) | luxS ← | S‑ribosylhomocysteine lyase |
| RA | 2,821,522 | G→A | P164S (CCA→TCA) | alaS ← | alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor |
| RA | 2,849,928 | Δ1 bp | intergenic (‑79/+46) | hycB ← / ← hycA | formate hydrogenlyase subunit HycB/regulator of the transcriptional regulator FhlA |
| RA | 2,852,276 | T→C | A47A (GCT→GCC) | hypD → | Fe‑(CN)2CO cofactor assembly scaffold protein HypD |
| RA | 2,854,148 | G→A | D299N (GAC→AAC) | hypE → | hydrogenase maturation protein, carbamoyl dehydratase |
| RA | 2,858,782 | A→C | T564P (ACC→CCC) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,865,111 | T→C | I4T (ATT→ACT) | ygbN → | putative transporter YgbN |
| RA | 2,877,592 | G→A | V338M (GTG→ATG) | iap → | alkaline phosphatase isozyme conversion protein |
| RA | 2,883,895 | G→A | Q82* (CAA→TAA) | casA ← | type I‑E CRISPR system Cascade subunit CasA |
| RA | 2,885,049 | G→A | P724L (CCT→CTT) | cas3 ← | CRISPR‑associated endonuclease/helicase Cas3 |
| RA | 2,887,571 | Δ1 bp | intergenic (+163/+7) | sokX → / ← cysH | small RNA SokX/phosphoadenosine phosphosulfate reductase |
| RA | 2,889,110 | T→C | K330K (AAA→AAG) | cysI ← | sulfite reductase, hemoprotein subunit |
| RA | 2,891,810 | G→A | P30L (CCC→CTC) | cysJ ← | sulfite reductase, flavoprotein subunit |
| RA | 2,928,914 | C→T | S229F (TCT→TTT) | sdaC → | serine:H(+) symporter SdaC |
| RA | 2,945,771 | C→T | A24A (GCG→GCA) | tcdA ← | tRNA threonylcarbamoyladenosine dehydratase |
| RA | 2,947,713 | (T)7→8 | intergenic (+30/+44) | metV → / ← amiC | tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase C |
| RA | 2,948,577 | G→C | A145G (GCC→GGC) | amiC ← | N‑acetylmuramoyl‑L‑alanine amidase C |
| RA | 2,962,983 | (T)5→4 | coding (174/408 nt) | ygdB ← | DUF2509 domain‑containing protein YgdB |
| RA | 2,967,332 | Δ1 bp | coding (1103/2247 nt) | ptsP ← | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| RA | 2,989,072 | G→A | E191K (GAA→AAA) | yqeI → | putative transcriptional regulator YqeI |
| RA | 2,989,382 | A→G | T27A (ACT→GCT) | yqeJ → | protein YqeJ |
| RA | 2,993,754 | T→A | D39E (GAT→GAA) | ygeI → | protein YgeI |
| RA | 2,997,779 | T→C | pseudogene (210/300 nt) | ygeP ← | protein YgeP |
| RA | 2,998,727 | G→A | N34N (AAC→AAT) | ygeQ ← | protein YgeQ |
| RA | 2,998,759 | Δ1 bp | coding (70/795 nt) | ygeQ ← | protein YgeQ |
| RA | 3,003,834 | G→C | A116P (GCA→CCA) | xdhC → | putative xanthine dehydrogenase iron‑sulfur‑binding subunit XdhC |
| RA | 3,005,966 | G→A | intergenic (‑180/‑296) | ygeV ← / → ygeW | putative sigma(54)‑dependent transcriptional regulator YgeV/putative carbamoyltransferase YgeW |
| RA | 3,007,291 | G→T | E344* (GAA→TAA) | ygeW → | putative carbamoyltransferase YgeW |
| RA | 3,020,030 | C→T | N290N (AAC→AAT) | ssnA → | putative aminohydrolase |
| RA | 3,028,232 | C→A | A371D (GCT→GAT) | ghxQ → | guanine/hypoxanthine transporter GhxQ |
| RA | 3,028,256 | T→C | M379T (ATG→ACG) | ghxQ → | guanine/hypoxanthine transporter GhxQ |
| RA | 3,030,090 | A→G | V281A (GTC→GCC) | ygfT ← | fused putative oxidoreductase, Fe‑S subunit and nucleotide‑binding subunit |
| RA | 3,030,758 | G→C | H58Q (CAC→CAG) | ygfT ← | fused putative oxidoreductase, Fe‑S subunit and nucleotide‑binding subunit |
| RA | 3,031,950 | T→C | I195T (ATC→ACC) | uacT → | urate:H(+) symporter |
| RA | 3,032,582 | C→T | P406S (CCG→TCG) | uacT → | urate:H(+) symporter |
| RA | 3,039,238 | A→C | V169G (GTC→GGC) | xerD ← | site‑specific recombinase |
| RA | 3,060,772 | (T)8→9 | intergenic (+126/‑78) | argP → / → scpA | DNA‑binding transcriptional dual regulator ArgP/methylmalonyl‑CoA mutase |
| RA | 3,064,741 | T→C | F250S (TTC→TCC) | scpB → | methylmalonyl‑CoA decarboxylase |
| RA | 3,077,201 | (T)6→7 | coding (256/1278 nt) | yggP ← | putative zinc‑binding dehydrogenase YggP |
| RA | 3,077,875 | C→T | A329T (GCT→ACT) | cmtA ← | mannitol‑specific PTS enzyme IICB component CmtA |
| RA | 3,083,832 | (A)7→8 | intergenic (‑35/+103) | speB ← / ← speA | agmatinase/arginine decarboxylase, biosynthetic |
| RA | 3,101,644 | T→C | intergenic (‑21/+163) | yggN ← / ← yggL | putative EcfF/protein YggL |
| RA | 3,102,267 | C→A | D196Y (GAC→TAC) | trmI ← | tRNA m(7)G46 methyltransferase |
| RA | 3,102,776 | C→T | R26H (CGC→CAC) | trmI ← | tRNA m(7)G46 methyltransferase |
| RA | 3,107,146 | T→C | Q670Q (CAA→CAG) | speC ← | ornithine decarboxylase, biosynthetic |
| RA | 3,119,442 | (A)7→6 | intergenic (‑330/+155) | yghJ ← / ← glcA | putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA |
| RA | 3,123,304 | C→T | A168T (GCC→ACC) | glcB ← | malate synthase G |
| RA | 3,129,090 | Δ1 bp | coding (1126/1173 nt) | yghO ← | putative DNA‑binding transcriptional regulator YghO |
| RA | 3,134,358 | (A)7→6 | coding (228/693 nt) | yghT → | putative ATP‑binding protein YghT |
| RA | 3,139,164 | Δ1 bp | coding (438/867 nt) | yghU → | disulfide reductase/organic hydroperoxide reductase |
| RA | 3,139,574 | A→T | E283V (GAA→GTA) | yghU → | disulfide reductase/organic hydroperoxide reductase |
| RA | 3,152,454 | A→G | E73E (GAA→GAG) | metC → | cystathionine beta‑lyase/L‑cysteine desulfhydrase |
| RA | 3,182,453 | C→A | intergenic (‑19/‑97) | ygiD ← / → zupT | 4,5‑DOPA dioxygenase extradiol/heavy metal divalent cation transporter ZupT |
| RA | 3,184,351 | T→C | N39S (AAC→AGC) | ribB ← | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,187,697 | (A)6→7 | pseudogene (266/2434 nt) | yqiG → | putative outer membrane usher protein YqiG |
| RA | 3,189,625 | C→A | pseudogene (2194/2434 nt) | yqiG → | putative outer membrane usher protein YqiG |
| RA | 3,190,185 | T→C | L102P (CTT→CCT) | yqiH → | putative fimbrial chaperone YqiH |
| RA | 3,194,572 | (T)6→5 | intergenic (+47/+149) | yqiK → / ← sibD | protein YqiK/small RNA SibD |
| RA | 3,200,368 | G→A | Q200* (CAG→TAG) | ygiF ← | inorganic triphosphatase |
| RA | 3,219,561 | A→G | K23R (AAG→AGG) | patA → | putrescine aminotransferase |
| RA | 3,230,163 | T→C | Y426H (TAT→CAT) | ygjK → | glycoside hydrolase |
| RA | 3,243,047 | A→T | Y90N (TAT→AAT) | uxaA ← | D‑altronate dehydratase |
| RA | 3,257,401 | G→T | H204N (CAT→AAT) | cyuP ← | putative D/L‑serine transporter |
| RA | 3,264,112 | C→G | A302A (GCG→GCC) | tdcC ← | threonine/serine:H(+) symporter |
| RA | 3,265,761 | C→A | V90F (GTT→TTT) | tdcB ← | catabolic threonine dehydratase |
| RA | 3,268,304 | (C)6→5 | coding (451/540 nt) | yhaB → | protein YhaB |
| RA | 3,280,706 | A→G | pseudogene (6/402 nt) | agaW → | N‑acetyl‑D‑galactosamine specific PTS truncated enzyme IIC component |
| RA | 3,302,518 | Δ1 bp | coding (30/879 nt) | yhbV → | putative peptidase YhbV |
| RA | 3,313,786 | C→T | L743L (CTG→CTA) | infB ← | translation initiation factor IF‑2 |
| RA | 3,314,620 | T→C | V465V (GTA→GTG) | infB ← | translation initiation factor IF‑2 |
| RA | 3,315,439 | A→G | R192R (CGT→CGC) | infB ← | translation initiation factor IF‑2 |
| RA | 3,328,268 | A→G | F150L (TTT→CTT) | greA ← | transcription elongation factor GreA |
| RA | 3,340,963 | C→A | A230E (GCG→GAG) | yrbG → | putative transport protein YrbG |
| RA | 3,354,739 | Δ1 bp | coding (15/4461 nt) | gltB → | glutamate synthase subunit GltB |
| RA | 3,360,842 | T→C | intergenic (+226/‑334) | gltD → / → gltF | glutamate synthase subunit GltD/periplasmic protein GltF |
| RA | 3,362,565 | G→A | D152N (GAC→AAC) | yhcA → | putative fimbrial chaperone YhcA |
| RA | 3,362,820 | C→T | T5M (ACG→ATG) | yhcD → | putative fimbrial usher protein YhcD |
| RA | 3,371,572 | C→T | G335S (GGT→AGT) | nanT ← | N‑acetylneuraminate:H(+) symporter |
| RA | 3,375,973 | G→A | G369S (GGC→AGC) | dcuD → | putative transporter DcuD |
| RA | 3,390,209 | G→A | L230L (CTG→CTA) | aaeR → | LysR‑type transcriptional regulator AaeR |
| RA | 3,400,225 | T→C | E288G (GAG→GGG) | mreB ← | dynamic cytoskeletal protein MreB |
| RA | 3,408,537 | T→C | L311L (TTA→CTA) | panF → | pantothenate:Na(+) symporter |
| RA | 3,411,849 | T→C | F66S (TTT→TCT) | yhdJ → | DNA adenine methyltransferase |
| RA | 3,431,553 | G→A | A137V (GCC→GTC) | yrdD ← | putative DNA topoisomerase |
| RA | 3,457,239 | T→A | V288D (GTT→GAT) | gspD → | Type II secretion system protein GspD |
| RA | 3,459,753 | T→C | I472T (ATA→ACA) | gspE → | Type II secretion system protein GspE |
| RA | 3,469,803 | A→G | C17C (TGT→TGC) | chiA ← | endochitinase |
| RA | 3,471,702 | A→T | F605I (TTT→ATT) | fusA ← | elongation factor G |
| RA | 3,485,644 | C→T | G59R (GGG→AGG) | yhfA ← | OsmC family protein |
| RA | 3,486,358 | G→A | G80D (GGC→GAC) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,487,359 | A→G | H190R (CAC→CGC) | yhfK → | putative transporter YhfK |
| RA | 3,493,804 | T→C | intergenic (+55/‑207) | tsgA → / → nirB | putative transporter TsgA/nitrite reductase catalytic subunit NirB |
| RA | 3,509,874 | T→C | H368R (CAT→CGT) | yhfX ← | putative PLP‑binding protein YhfX |
| RA | 3,521,934 | T→C | Q13Q (CAA→CAG) | hofN ← | DNA utilization protein HofN |
| RA | 3,568,321 | G→A | G336G (GGC→GGT) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
| RA | 3,569,344 | (T)6→5 | intergenic (‑16/+2) | glgC ← / ← glgX | glucose‑1‑phosphate adenylyltransferase/limit dextrin alpha‑1,6‑glucohydrolase |
| RA | 3,571,289 | Δ1 bp | coding (31/1974 nt) | glgX ← | limit dextrin alpha‑1,6‑glucohydrolase |
| RA | 3,582,417 | T→C | A185A (GCT→GCC) | yhhZ → | putative endonuclease YhhZ |
| RA | 3,583,237 | T→A | pseudogene (200/390 nt) | yrhA → | putative uncharacterized protein YrhA |
| RA | 3,590,742 | T→C | D57G (GAT→GGT) | ugpA ← | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpA |
| RA | 3,595,767 | C→A | A213S (GCG→TCG) | livH ← | branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH |
| RA | 3,611,584 | A→G | F50F (TTT→TTC) | yhhS ← | putative transporter YhhS |
| RA | 3,626,245 | T→C | T187A (ACC→GCC) | yhhJ ← | ABC transporter family protein YhhJ |
| RA | 3,632,970 | A→G | pseudogene (1489/1607 nt) | yhiL ← | putative uncharacterized protein YhiL |
| RA | 3,645,592 | C→T | Q70* (CAG→TAG) | rlmJ → | 23S rRNA m(6)A2030 methyltransferase |
| RA | 3,651,128 | (T)7→8 | intergenic (+466/‑163) | arsC → / → yhiS | arsenate reductase/putative uncharacterized protein YhiS |
| RA | 3,658,642 | G→A | E93K (GAA→AAA) | gadE → | DNA‑binding transcriptional activator GadE |
| RA | 3,658,962 | (C)5→4 | intergenic (+69/‑30) | gadE → / → gadF | DNA‑binding transcriptional activator GadE/small regulatory RNA GadF |
| RA | 3,667,617 | (A)6→5 | intergenic (‑37/+174) | gadA ← / ← ccp | glutamate decarboxylase A/cytochrome c peroxidase |
| RA | 3,672,287 | Δ1 bp | intergenic (‑393/‑127) | yhjB ← / → yhjC | putative DNA‑binding transcriptional regulator YhjB/putative DNA‑binding transcriptional regulator YhjC |
| RA | 3,674,704 | T→C | intergenic (+329/‑82) | yhjD → / → yhjE | putative transporter YhjD/putative transporter YhjE |
| RA | 3,674,725 | G→T | intergenic (+350/‑61) | yhjD → / → yhjE | putative transporter YhjD/putative transporter YhjE |
| RA | 3,681,841 | G→A | Q34* (CAA→TAA) | yhjJ ← | peptidase M16 family protein |
| RA | 3,704,577 | C→T | R62H (CGC→CAC) | dppC ← | dipeptide ABC transporter membrane subunit DppC |
| RA | 3,704,816 | A→T | D325E (GAT→GAA) | dppB ← | dipeptide ABC transporter membrane subunit DppB |
| RA | 3,708,650 | T→C | noncoding (43/77 nt) | proK ← | tRNA‑Pro |
| RA | 3,710,393 | (A)6→5 | coding (83/1692 nt) | eptB ← | Kdo2‑lipid A phosphoethanolamine 7''‑transferase |
| RA | 3,710,538 | G→T | intergenic (‑63/+261) | eptB ← / ← yhjX | Kdo2‑lipid A phosphoethanolamine 7''‑transferase/putative pyruvate transporter |
| RA | 3,710,634 | Δ1 bp | intergenic (‑159/+165) | eptB ← / ← yhjX | Kdo2‑lipid A phosphoethanolamine 7''‑transferase/putative pyruvate transporter |
| RA | 3,713,323 | Δ1 bp | coding (232/564 nt) | tag → | 3‑methyl‑adenine DNA glycosylase I, constitutive |
| RA | 3,719,397 | Δ1 bp | intergenic (‑353/‑81) | yiaF ← / → yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| RA | 3,730,170 | T→C | N199S (AAT→AGT) | xylA ← | xylose isomerase |
| RA | 3,737,646 | G→A | T50T (ACG→ACA) | malS → | alpha‑amylase |
| RA | 3,743,122 | (A)5→4 | coding (390/999 nt) | yiaK → | 2,3‑diketo‑L‑gulonate reductase |
| RA | 3,752,105 | C→T | S38S (AGC→AGT) | yiaU → | putative LysR‑type DNA‑binding transcriptional regulator YiaU |
| RA | 3,793,741 | A→G | intergenic (‑58/‑246) | htrL ← / → rfaD | protein HtrL/ADP‑L‑glycero‑D‑mannoheptose 6‑epimerase |
| RA | 3,795,757 | G→C | A277P (GCG→CCG) | waaF → | ADP‑heptose‑‑LPS heptosyltransferase 2 |
| RA | 3,797,159 | (A)6→5 | coding (212/1260 nt) | waaL → | O‑antigen ligase |
| RA | 3,799,102 | Δ1 bp | coding (211/1074 nt) | waaU ← | putative ADP‑heptose:LPS heptosyltransferase 4 |
| RA | 3,808,417 | (A)8→9 | intergenic (‑319/‑123) | waaQ ← / → waaA | lipopolysaccharide core heptosyltransferase 3/KDO transferase |
| RA | 3,816,729 | (G)5→4 | coding (54/864 nt) | yicC → | UPF0701 family protein YicC |
| RA | 3,826,047 | A→T | I280F (ATC→TTC) | recG → | ATP‑dependent DNA helicase RecG |
| RA | 3,837,621 | (T)5→6 | coding (669/1185 nt) | setC → | putative arabinose exporter |
| RA | 3,839,737 | A→G | V86A (GTC→GCC) | nlpA ← | lipoprotein‑28 |
| RA | 3,855,981 | T→C | G109G (GGA→GGG) | yidH ← | conserved inner membrane protein YidH |
| RA | 3,863,817 | A→T | intergenic (‑214/‑82) | glvC ← / → yidP | putative PTS enzyme II component GlvC/putative DNA‑binding transcriptional regulator YidP |
| RA | 3,871,835 | C→T | intergenic (‑105/+15) | dgoT ← / ← dgoD | putative D‑galactonate transporter/D‑galactonate dehydratase |
| RA | 3,876,270 | A→G | I228T (ATT→ACT) | yidA ← | sugar phosphatase YidA |
| RA | 3,899,378 | T→C | T6A (ACC→GCC) | yieK ← | putative glucosamine‑6‑phosphate deaminase YieK |
| RA | 3,910,355 | C→A | G15V (GGC→GTC) | pstC ← | phosphate ABC transporter membrane subunit PstC |
| RA | 3,912,061 | T→C | E536E (GAA→GAG) | glmS ← | L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,918,962 | T→A | E299V (GAG→GTG) | atpA ← | ATP synthase F1 complex subunit alpha |
| RA | 3,931,370 | G→T | V19F (GTT→TTT) | kup → | K(+):H(+) symporter Kup |
| RA | 3,933,826 | Δ1 bp | coding (49/1506 nt) | rbsA → | ribose ABC transporter ATP binding subunit |
| RA | 3,941,650 | A→G | intergenic (‑323/‑158) | yieP ← / → rrsC | putative transcriptional regulator YieP/16S ribosomal RNA |
| RA | 3,949,783 | (T)7→6 | coding (187/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| RA | 3,960,055 | Δ1 bp | pseudogene (406/449 nt) | yifN ← | putative toxin YifN |
| RA | 3,960,934 | G→T | T86T (ACG→ACT) | rep → | ATP‑dependent DNA helicase Rep |
| RA | 3,964,541 | A→G | Y364H (TAT→CAT) | rhlB ← | ATP‑dependent RNA helicase RhlB |
| RA | 3,983,380 | C→A | R141R (CGC→CGA) | aslB → | putative anaerobic sulfatase maturation enzyme AslB |
| RA | 4,003,188 | T→C | L2L (TTA→TTG) | yigG ← | inner membrane protein |
| RA | 4,007,952 | A→G | K66E (AAA→GAA) | rhtC → | L‑threonine exporter |
| RA | 4,018,030 | Δ1 bp | coding (698/1428 nt) | rmuC → | putative recombination limiting protein RmuC |
| RA | 4,033,626 | A→G | Y161C (TAT→TGT) | trkH → | K(+) transporter TrkH |
| RA | 4,048,459 | C→T | A498A (GCC→GCT) | polA → | DNA polymerase I |
| RA | 4,052,367 | T→C | L108S (TTG→TCG) | hemN → | coproporphyrinogen III dehydrogenase |
| RA | 4,060,925 | Δ1 bp | coding (479/711 nt) | yihL → | putative transcriptional regulator YihL |
| RA | 4,064,998 | C→T | A257T (GCG→ACG) | yihO ← | putative sulfoquinovose transporter |
| RA | 4,070,576 | G→A | P394L (CCG→CTG) | yihS ← | sulfoquinovose isomerase |
| RA | 4,076,654 | C→T | A170V (GCG→GTG) | yihY → | putative inner membrane protein |
| RA | 4,084,906 | +G | coding (917/3051 nt) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,090,946 | G→A | A474V (GCC→GTC) | frvB ← | putative PTS enzyme IIBC component FrvB |
| RA | 4,091,800 | Δ1 bp | coding (567/1452 nt) | frvB ← | putative PTS enzyme IIBC component FrvB |
| RA | 4,098,551 | A→G | G272G (GGA→GGG) | rhaS → | DNA‑binding transcriptional activator RhaS |
| RA | 4,108,387 | G→C | G279A (GGT→GCT) | pfkA → | 6‑phosphofructokinase I |
| RA | 4,109,886 | T→C | intergenic (+63/‑44) | sbp → / → cdh | sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp/CDP‑diacylglycerol diphosphatase |
| RA | 4,112,540 | Δ1 bp | coding (226/441 nt) | yiiR → | DUF805 domain‑containing protein YiiR |
| RA | 4,129,362 | G→T | V231L (GTG→TTG) | metB → | O‑succinylhomoserine(thiol)‑lyase/O‑ succinylhomoserine lyase |
| RA | 4,131,924 | C→T | S697L (TCG→TTG) | metL → | fused aspartate kinase/homoserine dehydrogenase 2 |
| RA | 4,142,492 | A→T | intergenic (‑271/‑38) | ptsA ← / → frwC | putative PTS multiphosphoryl transfer protein PtsA/putative PTS enzyme IIC component FrwC |
| RA | 4,147,894 | C→A | A142S (GCA→TCA) | yijO ← | putative DNA‑binding transcriptional regulator YijO |
| RA | 4,156,840 | A→G | intergenic (+51/‑10) | argB → / → argH | acetylglutamate kinase/argininosuccinate lyase |
| RA | 4,163,286 | (A)5→4 | intergenic (‑16/‑353) | trmA ← / → btuB | tRNA m(5)U54 methyltransferase/cobalamin/cobinamide outer membrane transporter |
| RA | 4,175,853 | (T)6→5 | intergenic (+24/‑91) | thrT → / → tufB | tRNA‑Thr/translation elongation factor Tu 2 |
| RA | 4,179,749 | T→C | intergenic (+166/‑247) | rplA → / → rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
| RA | 4,188,003 | T→C | V885A (GTT→GCT) | rpoC → | RNA polymerase subunit beta' |
| RA | 4,192,531 | G→A | S35S (AGC→AGT) | thiG ← | 1‑deoxy‑D‑xylulose 5‑phosphate:thiol sulfurtransferase |
| RA | 4,220,231 | C→T | R546C (CGC→TGC) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,221,347 | T→C | I381V (ATT→GTT) | arpA ← | regulator of acetyl CoA synthetase |
| RA | 4,222,138 | G→A | T117I (ACT→ATT) | arpA ← | regulator of acetyl CoA synthetase |
| RA | 4,222,400 | A→G | F30L (TTT→CTT) | arpA ← | regulator of acetyl CoA synthetase |
| RA | 4,232,891 | C→T | V115I (GTC→ATC) | lysC ← | aspartate kinase III |
| RA | 4,234,701 | T→C | V315A (GTA→GCA) | pgi → | glucose‑6‑phosphate isomerase |
| RA | 4,239,166 | C→T | N511N (AAC→AAT) | yjbH → | YjbH family protein |
| RA | 4,251,224 | C→T | pseudogene (522/1581 nt) | yjbI → | pentapeptide repeats‑containing protein YjbI |
| RA | 4,252,298 | C→T | intergenic (+15/‑208) | yjbI → / → ubiC | pentapeptide repeats‑containing protein YjbI/chorismate lyase |
| RA | 4,255,489 | C→T | P326P (CCG→CCA) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,259,861 | A→G | L48P (CTT→CCT) | zur ← | DNA‑binding transcriptional repressor Zur |
| RA | 4,273,365 | C→A | L169L (CTG→CTT) | uvrA ← | excision nuclease subunit A |
| RA | 4,283,975 | T→C | I310V (ATT→GTT) | actP ← | acetate/glycolate:cation symporter |
| RA | 4,297,609 | G→A | Y586Y (TAC→TAT) | fdhF ← | formate dehydrogenase H |
| RA | 4,297,871 | T→C | Q499R (CAG→CGG) | fdhF ← | formate dehydrogenase H |
| RA | 4,301,528 | +C | coding (1551/2052 nt) | mdtO ← | putative multidrug efflux pump subunit MdtO |
| RA | 4,313,074 | (A)7→8 | intergenic (‑83/‑276) | alsR ← / → rpiB | DNA‑binding transcriptional repressor AlsR/allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase B |
| RA | 4,333,425 | Δ1 bp | coding (526/669 nt) | basR ← | DNA‑binding transcriptional dual regulator BasR |
| RA | 4,339,401 | T→C | N374S (AAC→AGC) | adiA ← | arginine decarboxylase, degradative |
| RA | 4,342,680 | (A)5→4 | coding (770/1356 nt) | melA → | alpha‑galactosidase |
| RA | 4,347,746 | C→T | L333L (CTG→CTA) | dcuB ← | anaerobic C4‑dicarboxylate transporter DcuB |
| RA | 4,360,319 | Δ1 bp | intergenic (‑288/+77) | cadB ← / ← cadC | lysine:cadaverine antiporter/DNA‑binding transcriptional activator CadC |
| RA | 4,367,827 | A→G | I167I (ATT→ATC) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,371,109 | G→A | V29I (GTT→ATT) | groL → | chaperonin GroEL |
| RA | 4,390,171 | T→C | N64D (AAC→GAC) | psd ← | phosphatidylserine decarboxylase proenzyme |
| RA | 4,395,851 | G→A | E89E (GAG→GAA) | tsaE → | N(6)‑L‑threonylcarbamoyladenine synthase, TsaE subunit |
| RA | 4,399,875 | A→G | E208E (GAA→GAG) | miaA → | tRNA dimethylallyltransferase |
| RA | 4,429,686 | T→C | intergenic (+131/‑178) | fklB → / → cycA | FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB/serine/alanine/glycine/cycloserine:H(+)symporter |
| RA | 4,430,787 | G→C | A308A (GCG→GCC) | cycA → | serine/alanine/glycine/cycloserine:H(+)symporter |
| RA | 4,436,800 | A→G | I16V (ATT→GTT) | cysQ → | 3'(2'),5'‑bisphosphate nucleotidase |
| RA | 4,442,298 | G→A | intergenic (‑122/‑84) | msrA ← / → tamA | methionine sulfoxide reductase A/translocation and assembly module subunit TamA |
| RA | 4,446,157 | G→A | W682* (TGG→TGA) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,477,066 | G→A | V544I (GTT→ATT) | yjgL → | protein YjgL |
| RA | 4,481,269 | G→A | P857S (CCT→TCT) | valS ← | valine‑‑tRNA ligase |
| RA | 4,486,291 | T→A | I25N (ATC→AAC) | lptF → | lipopolysaccharide transport system protein LptF |
| RA | 4,498,047 | (G)6→7 | intergenic (+107/‑225) | intB → / → insC‑6 | KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA |
| RA | 4,503,638 | A→G | intergenic (‑207/‑420) | insG ← / → yjhB | KpLE2 phage‑like element; IS4 putative transposase/putative sialic acid transporter |
| RA | 4,503,704 | A→G | intergenic (‑273/‑354) | insG ← / → yjhB | KpLE2 phage‑like element; IS4 putative transposase/putative sialic acid transporter |
| RA | 4,504,957 | (T)8→7 | coding (900/1218 nt) | yjhB → | putative sialic acid transporter |
| RA | 4,505,148 | A→G | Y364C (TAC→TGC) | yjhB → | putative sialic acid transporter |
| RA | 4,507,390 | T→C | pseudogene (194/255 nt) | insO → | KpLE2 phage‑like element; IS911B regulator fragment |
| RA | 4,513,865 | A→G | G148G (GGT→GGC) | fecB ← | ferric citrate ABC transporter periplasmic binding protein |
| RA | 4,514,463 | (T)5→4 | coding (2215/2325 nt) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,514,908 | C→T | L590L (CTG→CTA) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,520,100 | A→G | I75I (ATT→ATC) | yjhU ← | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU |
| RA | 4,520,574 | (T)5→4 | intergenic (‑250/+97) | yjhU ← / ← yjhF | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF |
| RA | 4,525,883 | G→A | intergenic (‑80/+223) | yjhI ← / ← sgcR | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhI/KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator SgcR |
| RA | 4,531,506 | A→C | V49G (GTC→GGC) | sgcX ← | KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain |
| RA | 4,531,897 | G→T | intergenic (‑246/+540) | sgcX ← / ← yjhP | KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain/KpLE2 phage‑like element; putative methyltransferase YjhP |
| RA | 4,542,288 | Δ1 bp | coding (252/597 nt) | fimE → | regulator for fimA |
| RA | 4,550,731 | A→G | V189A (GTA→GCA) | gntP ← | fructuronate transporter |
| RA | 4,580,100 | (C)5→4 | coding (1363/1395 nt) | hsdS ← | type I restriction enzyme EcoKI specificity protein |
| RA | 4,583,657 | G→A | L1035L (CTC→CTT) | hsdR ← | type I restriction enzyme EcoKI endonuclease component |
| RA | 4,584,630 | A→G | V711A (GTC→GCC) | hsdR ← | type I restriction enzyme EcoKI endonuclease component |
| RA | 4,584,974 | C→T | Q596Q (CAG→CAA) | hsdR ← | type I restriction enzyme EcoKI endonuclease component |
| RA | 4,590,356 | T→C | K308K (AAA→AAG) | btsT ← | pyruvate:H(+) symporter |
| RA | 4,591,535 | Δ1 bp | intergenic (‑256/‑122) | btsT ← / → tsr | pyruvate:H(+) symporter/methyl‑accepting chemotaxis protein Tsr |
| RA | 4,596,424 | T→C | I145I (ATT→ATC) | lgoD → | L‑galactonate oxidoreductase |
| RA | 4,601,522 | T→C | intergenic (‑5/+102) | dnaT ← / ← yjjB | primosomal protein DnaT/putative succinate exporter YjjB |
| RA | 4,602,042 | A→G | I19T (ATT→ACT) | yjjB ← | putative succinate exporter YjjB |
| RA | 4,605,539 | T→G | E42A (GAG→GCG) | fhuF ← | hydroxamate siderophore iron reductase |
| RA | 4,607,016 | A→G | S229P (TCT→CCT) | rsmC ← | 16S rRNA m(2)G1207 methyltransferase |
| RA | 4,615,439 | G→A | C35C (TGC→TGT) | yjjW ← | putative glycyl‑radical enzyme activating enzyme YjjW |
| RA | 4,638,175 | A→G | intergenic (+55/‑3) | creC → / → creD | sensory histidine kinase CreC/putative inner membrane protein |
| RA | 4,639,493 | A→G | E439G (GAA→GGA) | creD → | putative inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 236063 | 236797 | 735 | 4 [3] | [3] 4 | [dnaQ] | [dnaQ] |
| * | * | ÷ | NC_000913 | 3423724–3424234 | 3424577–3424238 | 5–854 | 4 [3] | [3] 4 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 14 (0.420) | 4 (0.150) | 3/128 | 2.7 | 25.7% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 12 (0.460) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 14 (0.420) | 10 (0.380) | 10/128 | 1.2 | 46.3% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 12 (0.460) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||