breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	1,699	G→T	8.6%	P41Q (CCG→CAG)	parA ←	chromosome partition protein
RA	4,980	A→G	5.2%	intergenic (‑599/+32)	trmF ← / ← trmE	tRNA uridine 5‑carboxymethylaminomethyl modification protein/GTPase
RA	34,258	T→A	5.1%	L232Q (CTG→CAG)	czrSA →	metal‑sensor histidine kinase
RA	34,262	T→G	5.1%	A233A (GCT→GCG)	czrSA →	metal‑sensor histidine kinase
RA	34,263	C→A	5.1%	R234S (CGC→AGC)	czrSA →	metal‑sensor histidine kinase
RA	34,269	G→C	5.2%	D236H (GAT→CAT)	czrSA →	metal‑sensor histidine kinase
RA	39,490	C→A	5.2%	V73V (GTC→GTA)	PP_0036 →	transcriptional regulator
RA	48,872	T→G	5.8%	D168A (GAC→GCC) ‡	czcA‑I ←	cation efflux system protein
RA	48,873	C→A	6.0%	D168Y (GAC→TAC) ‡	czcA‑I ←	cation efflux system protein
RA	59,221	G→T	8.4%	intergenic (‑37/+95)	PP_0050 ← / ← PP_0051	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	59,222	T→C	8.2%	intergenic (‑38/+94)	PP_0050 ← / ← PP_0051	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	59,224	T→A	9.0%	intergenic (‑40/+92)	PP_0050 ← / ← PP_0051	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	59,226	G→A	9.0%	intergenic (‑42/+90)	PP_0050 ← / ← PP_0051	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	59,227	A→C	8.6%	intergenic (‑43/+89)	PP_0050 ← / ← PP_0051	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	68,340	G→T	11.3%	intergenic (+28/+147)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,342	A→T	9.8%	intergenic (+30/+145)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,344	A→C	9.9%	intergenic (+32/+143)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	82,210	T→C	5.1%	K307E (AAG→GAG)	qor‑I ←	quinone oxidoreductase
RA	82,854	A→C	8.2%	L92R (CTG→CGG)	qor‑I ←	quinone oxidoreductase
RA	82,857	G→T	8.2%	P91Q (CCG→CAG)	qor‑I ←	quinone oxidoreductase
RA	85,077	T→G	10.2%	intergenic (+55/+75)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,081	T→G	11.3%	intergenic (+59/+71)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	112,103	C→T	6.3%	P175L (CCG→CTG)	PP_0105 →	cytochrome c oxidase assembly protein
RA	126,115	A→G	8.4%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	8.4%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	132,463	G→A	5.9%	intergenic (+37/‑115)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	132,467	G→C	5.8%	intergenic (+41/‑111)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	132,883	A→C	7.0%	E102D (GAA→GAC)	dsbA →	thiol:disulfide interchange protein
RA	132,887	A→C	5.6%	M104L (ATG→CTG) ‡	dsbA →	thiol:disulfide interchange protein
RA	132,889	G→T	5.7%	M104I (ATG→ATT) ‡	dsbA →	thiol:disulfide interchange protein
RA	132,893	G→T	5.5%	V106F (GTC→TTC)	dsbA →	thiol:disulfide interchange protein
RA	155,543	G→T	6.8%	intergenic (‑248/+35)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	155,546	A→C	5.6%	intergenic (‑251/+32)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	162,281	A→T	13.7%	intergenic (‑315/+59)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,282	A→T	13.6%	intergenic (‑316/+58)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	163,973	T→A	5.0%	intergenic (‑140/+47)	scpC ← / ← pntB	propionyl‑CoA:succinate CoA transferase/pyridine nucleotide transhydrogenase subunit beta
RA	165,929	G→T	7.1%	A326A (GCC→GCA)	pntAA ←	pyridine nucleotide transhydrogenase subunit alpha
RA	165,932	A→C	6.3%	D325E (GAT→GAG)	pntAA ←	pyridine nucleotide transhydrogenase subunit alpha
RA	182,034	G→A	10.1%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	8.7%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	9.0%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	184,287	A→C	5.0%	H92Q (CAT→CAG)	PP_0160 ←	ferrioxamine receptor
RA	190,895	C→T	6.4%	A159A (GCG→GCA)	PP_0166 ←	HlyD family secretion protein
RA	195,559	C→A	28.8%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	9.2%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	9.2%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	42.3%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	5.5%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	15.6%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	19.8%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	27.5%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,372	A→G	9.2%	K626K (AAA→AAG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	29.0%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	5.9%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	14.2%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	9.8%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,185	C→T	8.6%	T897T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	8.0%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	15.1%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	16.2%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	17.0%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	13.3%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	198,013	C→T	7.3%	I1173I (ATC→ATT)	PP_0168 →	putative surface adhesion protein
RA	198,014	A→G	7.2%	N1174D (AAT→GAT)	PP_0168 →	putative surface adhesion protein
RA	213,354	T→A	5.3%	L6287Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	215,334	T→A	9.8%	L6947Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	217,440	A→G	6.5%	N7649S (AAC→AGC)	PP_0168 →	putative surface adhesion protein
RA	243,622	T→A	7.8%	K183N (AAA→AAT) ‡	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	243,623	T→A	7.8%	K183I (AAA→ATA) ‡	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	268,744	T→A	9.1%	intergenic (‑75/+25)	PP_0216 ← / ← desA	sensory box/GGDEF family protein/delta‑9 fatty acid desaturase
RA	268,746	G→C	8.2%	intergenic (‑77/+23)	PP_0216 ← / ← desA	sensory box/GGDEF family protein/delta‑9 fatty acid desaturase
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	289,942	C→A	7.2%	intergenic (+26/‑140)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,944	G→C	7.8%	intergenic (+28/‑138)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,946	T→G	7.4%	intergenic (+30/‑136)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	307,196	A→C	7.0%	intergenic (+211/‑1658)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	309,231	T→G	6.2%	P126P (CCT→CCG)	PP_0254 →	hypothetical protein
RA	322,133	G→A	14.0%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	15.1%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	338,065	G→T	10.0%	A168A (GCC→GCA)	PP_0280 ←	amino acid ABC transporter permease
RA	338,068	A→C	8.8%	S167R (AGT→AGG)	PP_0280 ←	amino acid ABC transporter permease
RA	344,032	A→G	9.2%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,041	Δ1 bp	9.0%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	9.1%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	345,705	G→C	5.9%	A714G (GCC→GGC)	PP_0287 ←	hypothetical protein
RA	345,707	C→A	5.8%	L713L (CTG→CTT)	PP_0287 ←	hypothetical protein
RA	345,712	T→G	5.7%	K712Q (AAG→CAG)	PP_0287 ←	hypothetical protein
RA	345,714	G→C	6.1%	A711G (GCC→GGC)	PP_0287 ←	hypothetical protein
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	358,085	A→G	10.5%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,087	C→T	11.8%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	T→C	12.1%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,091	G→A	12.5%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	A→G	10.8%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,096	C→T	10.5%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	365,894	C→T	8.3%	A54V (GCG→GTG)	cdhR →	HTH‑type transcriptional regulator CdhR
RA	401,361	C→T	7.5%	A316V (GCG→GTG)	PP_0334 →	transposase
RA	407,762	A→T	5.9%	A81A (GCT→GCA)	aceF ←	AceF‑S‑acetyldihydrolipoate
RA	407,765	A→T	5.6%	A80A (GCT→GCA)	aceF ←	AceF‑S‑acetyldihydrolipoate
RA	418,296	C→G	5.2%	Q27E (CAG→GAG)	PP_0345 →	heptose kinase WapP
RA	422,059	T→C	5.9%	Q630R (CAG→CGG)	PP_0348 ←	hypothetical protein
RA	422,065	A→C	6.0%	I628S (ATC→AGC)	PP_0348 ←	hypothetical protein
RA	422,067	C→G	6.2%	L627L (CTG→CTC) ‡	PP_0348 ←	hypothetical protein
RA	422,069	G→T	6.1%	L627M (CTG→ATG) ‡	PP_0348 ←	hypothetical protein
RA	445,095	T→C	17.2%	intergenic (+68/‑220)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,105	A→T	12.8%	intergenic (+78/‑210)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	450,626	T→G	7.8%	intergenic (+18/‑178)	PP_0370 → / → PP_mr05	acyl‑CoA dehydrogenase family protein/RsmY ncRNA
RA	450,627	G→C	7.2%	intergenic (+19/‑177)	PP_0370 → / → PP_mr05	acyl‑CoA dehydrogenase family protein/RsmY ncRNA
RA	450,628	C→A	7.6%	intergenic (+20/‑176)	PP_0370 → / → PP_mr05	acyl‑CoA dehydrogenase family protein/RsmY ncRNA
RA	471,066	T→C	5.9%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	479,493	A→G	7.5%	intergenic (‑25/+31)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,496	A→T	7.2%	intergenic (‑28/+28)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,499	A→T	8.0%	intergenic (‑31/+25)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,502	C→T	7.3%	intergenic (‑34/+22)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	484,688	C→T	6.9%	intergenic (‑250/+33)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	484,692	G→C	7.1%	intergenic (‑254/+29)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	484,696	A→G	7.0%	intergenic (‑258/+25)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	495,077	T→G	7.1%	Q319H (CAA→CAC) ‡	PP_0408 ←	hypothetical protein
RA	495,078	T→A	7.3%	Q319L (CAA→CTA) ‡	PP_0408 ←	hypothetical protein
RA	495,081	T→A	7.2%	E318V (GAG→GTG) ‡	PP_0408 ←	hypothetical protein
RA	495,082	C→A	7.0%	E318* (GAG→TAG) ‡	PP_0408 ←	hypothetical protein
RA	496,096	T→A	10.8%	intergenic (‑63/‑33)	PP_0408 ← / → PP_0409	hypothetical protein/two‑component system sensor histidine kinase
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	502,690	T→A	7.8%	F327I (TTC→ATC)	PP_0413 →	polyamine ABC transporter permease
RA	503,813	A→G	8.8%	intergenic (+16/‑135)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,825	Δ1 bp	13.0%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,831	A→T	12.8%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,832	A→T	12.8%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,837:1	+C	10.4%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	508,771	Δ1 bp	6.9%	coding (240/1890 nt)	estP ←	esterase EstP
RA	508,775	A→T	6.9%	V79D (GTC→GAC)	estP ←	esterase EstP
RA	508,778:1	+G	6.9%	coding (233/1890 nt)	estP ←	esterase EstP
RA	516,693	T→G	5.5%	E100A (GAA→GCA) ‡	PP_0429 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	516,694	C→A	10.2%	E100* (GAA→TAA) ‡	PP_0429 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	516,912	C→T	7.2%	R27H (CGC→CAC)	PP_0429 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	524,178	C→G	20.4%	intergenic (+45/‑771)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	532,945	C→G	6.1%	Y70* (TAC→TAG)	tufA →	elongation factor Tu‑A
RA	532,946	A→T	5.1%	N71Y (AAC→TAC)	tufA →	elongation factor Tu‑A
RA	545,513	G→T	6.1%	K1251N (AAG→AAT)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	548,908	G→T	5.2%	L586L (CTG→CTT)	fusA →	elongation factor G 1
RA	550,549	C→G	6.7%	intergenic (+30/‑112)	tufB → / → rpsJ	elongation factor Tu‑B/30S ribosomal protein S10
RA	556,978	C→T	6.2%	R9R (CGC→CGT)	rpsN →	30S ribosomal protein S14
RA	556,986	A→C	6.3%	K12T (AAG→ACG)	rpsN →	30S ribosomal protein S14
RA	556,989	G→T	6.3%	R13L (CGT→CTT)	rpsN →	30S ribosomal protein S14
RA	556,997	A→G	6.4%	T16A (ACG→GCG)	rpsN →	30S ribosomal protein S14
RA	568,250	Δ1 bp	6.8%	coding (1246/2835 nt)	uvrA ←	uvrABC excinuclease protein A
RA	568,254	G→C	7.2%	R414R (CGC→CGG)	uvrA ←	uvrABC excinuclease protein A
RA	568,257:1	+G	7.1%	coding (1239/2835 nt)	uvrA ←	uvrABC excinuclease protein A
RA	603,658	T→A	9.8%	intergenic (+54/‑38)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	603,660	G→A	9.6%	intergenic (+56/‑36)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	603,661	T→C	9.7%	intergenic (+57/‑35)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	603,663	T→A	9.5%	intergenic (+59/‑33)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	612,730	Δ1 bp	6.8%	coding (1452/1896 nt)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	612,734:1	+T	7.1%	coding (1448/1896 nt)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	616,450	A→C	7.9%	noncoding (72/142 nt)	PP_mr11 ←	FMN regulatory region
RA	616,451	T→A	8.1%	noncoding (71/142 nt)	PP_mr11 ←	FMN regulatory region
RA	616,452	G→T	8.3%	noncoding (70/142 nt)	PP_mr11 ←	FMN regulatory region
RA	618,358	A→G	5.9%	S71P (TCG→CCG)	PP_0532 ←	hypothetical protein
RA	652,764	G→C	8.1%	intergenic (‑101/+17)	dsbD‑I ← / ← ctpL	thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL
RA	652,767	G→C	8.2%	intergenic (‑104/+14)	dsbD‑I ← / ← ctpL	thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL
RA	657,266	G→A	5.5%	S233N (AGC→AAC)	PP_0564 →	hypothetical protein
RA	657,269	T→C	5.5%	V234A (GTT→GCT)	PP_0564 →	hypothetical protein
RA	665,907	A→G	5.8%	S925G (AGC→GGC)	yfhM →	lipoprotein
RA	670,785	C→T	11.7%	Q743* (CAG→TAG) ‡	pbpC →	peptidoglycan glycosyltransferase
RA	670,786	A→G	11.6%	Q743R (CAG→CGG) ‡	pbpC →	peptidoglycan glycosyltransferase
RA	675,587	A→T	7.1%	C38S (TGC→AGC)	PP_0577 ←	hypothetical protein
RA	675,589	C→G	7.4%	G37A (GGC→GCC)	PP_0577 ←	hypothetical protein
RA	675,591	A→T	7.4%	A36A (GCT→GCA)	PP_0577 ←	hypothetical protein
RA	684,841	Δ1 bp	5.9%	coding (1406/2400 nt)	cadA‑II ←	cadmium translocating P‑type ATPase
RA	684,846:1	+A	7.4%	coding (1401/2400 nt)	cadA‑II ←	cadmium translocating P‑type ATPase
RA	699,722	A→G	41.2%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	704,122	T→A	5.3%	L72H (CTC→CAC)	PP_5745 →	paraquat‑inducible protein A
RA	725,706	A→C	5.8%	L65V (TTG→GTG)	PP_0619 ←	branched‑chain amino acid ABC transporter substrate‑binding protein
RA	725,708	T→C	5.7%	Q64R (CAG→CGG)	PP_0619 ←	branched‑chain amino acid ABC transporter substrate‑binding protein
RA	725,711	G→A	5.7%	P63L (CCG→CTG)	PP_0619 ←	branched‑chain amino acid ABC transporter substrate‑binding protein
RA	725,713	G→T	6.8%	H62Q (CAC→CAA)	PP_0619 ←	branched‑chain amino acid ABC transporter substrate‑binding protein
RA	734,326	C→T	5.8%	A331T (GCG→ACG)	ndh ←	NADH dehydrogenase
RA	735,610	A→G	8.6%	intergenic (‑36/+97)	PP_0627 ← / ← PP_0628	hypothetical protein/hypothetical protein
RA	735,617	A→G	9.7%	intergenic (‑43/+90)	PP_0627 ← / ← PP_0628	hypothetical protein/hypothetical protein
RA	735,618	C→T	9.6%	intergenic (‑44/+89)	PP_0627 ← / ← PP_0628	hypothetical protein/hypothetical protein
RA	735,625	C→T	7.9%	intergenic (‑51/+82)	PP_0627 ← / ← PP_0628	hypothetical protein/hypothetical protein
RA	770,543	T→C	8.6%	V76A (GTC→GCC)	PP_0662 →	threonine synthase
RA	788,581	C→A	5.4%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,583	A→T	5.3%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,584	A→T	5.3%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,596	T→C	5.7%	intergenic (+46/‑167)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	794,511	A→C	5.9%	E218A (GAG→GCG)	PP_0680 →	ATP‑dependent protease‑like protein
RA	794,514	G→T	6.0%	R219L (CGC→CTC)	PP_0680 →	ATP‑dependent protease‑like protein
RA	801,355	A→G	6.0%	intergenic (+28/‑161)	rpmA → / → obg	50S ribosomal protein L27/GTPase Obg
RA	801,356	T→C	6.1%	intergenic (+29/‑160)	rpmA → / → obg	50S ribosomal protein L27/GTPase Obg
RA	801,357	G→A	6.2%	intergenic (+30/‑159)	rpmA → / → obg	50S ribosomal protein L27/GTPase Obg
RA	801,358	C→T	6.6%	intergenic (+31/‑158)	rpmA → / → obg	50S ribosomal protein L27/GTPase Obg
RA	819,241:1	+C	5.8%	coding (395/627 nt)	PP_0705 →	DNA‑3‑methyladenine glycosylase
RA	819,246	Δ1 bp	5.7%	coding (400/627 nt)	PP_0705 →	DNA‑3‑methyladenine glycosylase
RA	838,715	A→C	6.6%	intergenic (‑18/+41)	rplY ← / ← prs	50S ribosomal protein L25/general stress protein Ctc/ribose‑phosphate pyrophosphokinase
RA	838,716	C→T	6.0%	intergenic (‑19/+40)	rplY ← / ← prs	50S ribosomal protein L25/general stress protein Ctc/ribose‑phosphate pyrophosphokinase
RA	838,717	A→G	6.0%	intergenic (‑20/+39)	rplY ← / ← prs	50S ribosomal protein L25/general stress protein Ctc/ribose‑phosphate pyrophosphokinase
RA	838,718	G→T	7.5%	intergenic (‑21/+38)	rplY ← / ← prs	50S ribosomal protein L25/general stress protein Ctc/ribose‑phosphate pyrophosphokinase
RA	853,763	T→C	5.2%	R62R (CGT→CGC)	prmC →	release factor‑(glutamine‑N5) methyltransferase
RA	859,283	A→T	5.3%	L144Q (CTG→CAG)	PP_0740 ←	MerR family transcriptional regulator
RA	907,406	T→A	5.7%	intergenic (+17/+28)	PP_0790 → / ← yjjV	inner membrane protein AmpE/putative hydrolase
RA	911,786	T→C	7.5%	L765S (TTG→TCG)	fruB →	PTS fructose transporter subunit EI/HPr/IIA
RA	927,092	A→G	5.2%	I6177T (ATC→ACC)	PP_0806 ←	surface adhesion protein
RA	927,711	G→A	7.5%	L5971L (CTG→TTG)	PP_0806 ←	surface adhesion protein
RA	953,229	A→G	8.1%	H13R (CAC→CGC)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,549	A→C	6.4%	I120L (ATC→CTC)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,552	T→A	6.8%	Y121N (TAT→AAT) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,553	A→T	7.1%	Y121F (TAT→TTT) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,554	T→A	7.4%	Y121* (TAT→TAA) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,557	G→T	7.4%	E122D (GAG→GAT)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	955,149	A→G	12.8%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	13.3%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	15.0%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	13.0%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	C→T	15.3%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	994,947	T→A	8.9%	intergenic (+26/+99)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	994,948	T→A	7.5%	intergenic (+27/+98)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	998,231	T→G	7.0%	K630Q (AAG→CAG)	PP_0861 ←	outer membrane ferric siderophore receptor
RA	998,232	G→T	7.2%	G629G (GGC→GGA)	PP_0861 ←	outer membrane ferric siderophore receptor
RA	998,237	T→C	7.2%	S628G (AGC→GGC)	PP_0861 ←	outer membrane ferric siderophore receptor
RA	998,243	A→C	7.4%	S626A (TCC→GCC)	PP_0861 ←	outer membrane ferric siderophore receptor
RA	998,244	C→A	7.4%	L625L (CTG→CTT)	PP_0861 ←	outer membrane ferric siderophore receptor
RA	1,004,526	A→T	6.9%	Q184L (CAG→CTG)	PP_0866 →	transmembrane sensor
RA	1,013,241	G→C	13.6%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	11.9%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	11.4%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	13.4%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,017,452	G→T	9.6%	S137* (TCA→TAA)	PP_5461 ←	hypothetical protein
RA	1,019,112	T→A	6.0%	Q306L (CAG→CTG)	dppD ←	dipeptide ABC transporter ATP‑binding protein
RA	1,046,227	C→G	7.9%	M717I (ATG→ATC)	PP_0906 ←	RND family multidrug transporter
RA	1,046,230	C→G	7.9%	S716S (TCG→TCC)	PP_0906 ←	RND family multidrug transporter
RA	1,048,569	G→C	5.4%	A344G (GCC→GGC)	PP_0907 ←	RND transporter membrane fusion protein‑like protein
RA	1,048,573	C→A	6.7%	V343F (GTC→TTC)	PP_0907 ←	RND transporter membrane fusion protein‑like protein
RA	1,054,462	A→C	6.0%	M1G (GTG→GGG) †	PP_0912 ←	hypothetical protein
RA	1,054,464	A→T	6.1%	intergenic (‑1/+36)	PP_0912 ← / ← PP_0913	hypothetical protein/hypothetical protein
RA	1,054,465	A→G	6.1%	intergenic (‑2/+35)	PP_0912 ← / ← PP_0913	hypothetical protein/hypothetical protein
RA	1,054,478	G→T	8.9%	intergenic (‑15/+22)	PP_0912 ← / ← PP_0913	hypothetical protein/hypothetical protein
RA	1,070,246:1	+GA	100%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,081,094	A→T	6.5%	H250L (CAT→CTT)	PP_0938 →	hypothetical protein
JC	1,096,059	Δ11 bp	67.6%		[rpoN]	[rpoN]
RA	1,101,798	G→T	7.4%	A127S (GCA→TCA) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,101,799	C→G	6.7%	A127G (GCA→GGA) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,101,800	A→C	6.4%	A127A (GCA→GCC) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,124,422	Δ1 bp	9.1%	coding (721/1122 nt)	gcvT‑I ←	aminomethyltransferase
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,130,192	A→T	10.9%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,145,433	C→T	11.4%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,448	A→G	10.4%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,183,456	A→T	7.4%	I310N (ATT→AAT)	mltF ←	membrane‑bound lytic murein transglycosylase F
RA	1,183,462	G→A	7.1%	A308V (GCA→GTA)	mltF ←	membrane‑bound lytic murein transglycosylase F
RA	1,184,585	G→C	17.5%	intergenic (‑201/‑211)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,588	G→C	17.1%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,035	A→G	8.2%	intergenic (+25/+17)	PP_1038 → / ← tatC‑I	hypothetical protein/Sec‑independent protein translocase protein
RA	1,215,202	A→C	7.3%	L586R (CTG→CGG)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,207	G→T	6.9%	A584A (GCC→GCA) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,209	C→G	6.7%	A584P (GCC→CCC) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,211	A→C	6.2%	V583G (GTG→GGG)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,216	G→T	7.5%	A581A (GCC→GCA)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,226,707	T→A	9.5%	intergenic (‑217/‑114)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,226,710	T→A	9.2%	intergenic (‑220/‑111)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,245,330	G→C	9.3%	A66A (GCC→GCG)	pyrC ←	dihydroorotase
RA	1,245,334	G→C	10.1%	P65R (CCG→CGG)	pyrC ←	dihydroorotase
RA	1,245,338	G→C	9.9%	R64G (CGC→GGC)	pyrC ←	dihydroorotase
RA	1,253,429	G→C	6.3%	intergenic (‑75/+32)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,253,431	A→T	7.5%	intergenic (‑77/+30)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,253,433	G→C	6.4%	intergenic (‑79/+28)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,281,247	Δ1 bp	6.0%	coding (1662/1692 nt)	PP_1118 ←	recombinase‑like protein
RA	1,281,252:1	+C	6.0%	coding (1657/1692 nt)	PP_1118 ←	recombinase‑like protein
RA	1,300,022:1	+G	6.8%	coding (156/1608 nt)	PP_1134 ←	hypothetical protein
RA	1,300,027	Δ1 bp	6.4%	coding (151/1608 nt)	PP_1134 ←	hypothetical protein
RA	1,327,121	C→T	38.2%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,330,501	G→A	6.8%	intergenic (+32/‑275)	PP_5SE → / → PP_1157	5S ribosomal RNA/acetolactate synthase
RA	1,350,501	T→A	8.5%	K11N (AAA→AAT) ‡	PP_1176 ←	hypothetical protein
RA	1,350,502	T→A	8.5%	K11I (AAA→ATA) ‡	PP_1176 ←	hypothetical protein
RA	1,356,019	G→C	6.9%	intergenic (+286/‑106)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,024	T→C	7.7%	intergenic (+291/‑101)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,040	G→C	7.6%	intergenic (+307/‑85)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,054	G→C	5.8%	intergenic (+321/‑71)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,405	G→C	6.5%	G94A (GGC→GCC)	PP_1181 →	two‑component system response regulator
RA	1,380,722	G→T	6.0%	intergenic (‑110/+25)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,380,723	T→A	6.0%	intergenic (‑111/+24)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,380,724	T→A	7.6%	intergenic (‑112/+23)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,380,725	A→C	6.1%	intergenic (‑113/+22)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,383,254	A→T	10.1%	L16Q (CTG→CAG)	PP_1204 ←	lipoprotein
RA	1,385,147	G→A	5.1%	intergenic (‑117/+44)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
RA	1,385,148	T→A	5.2%	intergenic (‑118/+43)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
RA	1,385,149	G→T	5.3%	intergenic (‑119/+42)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
RA	1,385,150	A→C	5.3%	intergenic (‑120/+41)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
RA	1,385,151	T→A	5.3%	intergenic (‑121/+40)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
RA	1,385,152	T→C	5.3%	intergenic (‑122/+39)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
RA	1,388,044	T→A	5.1%	D149V (GAC→GTC)	PP_1209 ←	cold‑shock protein
RA	1,403,590	G→A	6.0%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,591	T→C	6.2%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,414,211	G→A	10.4%	S86S (AGC→AGT) ‡	PP_1236 ←	glycine cleavage system transcriptional repressor
RA	1,414,212	C→G	10.5%	S86T (AGC→ACC) ‡	PP_1236 ←	glycine cleavage system transcriptional repressor
RA	1,414,213	T→C	10.4%	S86G (AGC→GGC) ‡	PP_1236 ←	glycine cleavage system transcriptional repressor
RA	1,419,548:1	+C	45.8%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,425,621	A→C	5.2%	intergenic (+23/‑482)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,428,975	A→G	5.3%	Y359C (TAC→TGC) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,976	C→G	5.5%	Y359* (TAC→TAG) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,977	C→G	5.5%	P360A (CCA→GCA) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,978	C→T	5.4%	P360L (CCA→CTA) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,435,815	A→T	5.6%	L50Q (CTG→CAG)	PP_1256 ←	alpha‑ketoglutarate semialdehyde dehydrogenase
RA	1,435,822	A→T	5.5%	C48S (TGC→AGC)	PP_1256 ←	alpha‑ketoglutarate semialdehyde dehydrogenase
RA	1,445,044	G→A	6.6%	G223D (GGT→GAT)	PP_1263 →	fusaric acid resistance protein
RA	1,445,047	T→C	5.2%	I224T (ATC→ACC)	PP_1263 →	fusaric acid resistance protein
RA	1,449,139	T→C	6.4%	*287R (TGA→CGA)	PP_1266 →	fusaric acid resistance protein
RA	1,449,357	C→G	6.8%	V109L (GTG→CTG)	yhaV ←	toxin antitoxin system SohB(PrlF)‑YhaV toxin endoribonuclease
RA	1,449,361	G→C	7.1%	I107M (ATC→ATG)	yhaV ←	toxin antitoxin system SohB(PrlF)‑YhaV toxin endoribonuclease
RA	1,449,365	C→G	7.4%	R106T (AGG→ACG)	yhaV ←	toxin antitoxin system SohB(PrlF)‑YhaV toxin endoribonuclease
RA	1,460,539:1	+A	5.7%	coding (926/1167 nt)	algJ ←	alginate O‑acetylase AlgJ
RA	1,460,545	G→C	5.7%	A307G (GCC→GGC)	algJ ←	alginate O‑acetylase AlgJ
RA	1,460,551	Δ1 bp	6.1%	coding (914/1167 nt)	algJ ←	alginate O‑acetylase AlgJ
RA	1,483,877	T→G	5.1%	intergenic (+22/‑46)	yhdW → / → yhdX	amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease
RA	1,485,082	T→A	5.2%	I387N (ATT→AAT)	yhdX →	amino acid ABC transporter permease
RA	1,485,292	T→C	7.8%	W61R (TGG→CGG) ‡	yhdY →	amino acid ABC transporter permease
RA	1,485,293	G→C	7.6%	W61S (TGG→TCG) ‡	yhdY →	amino acid ABC transporter permease
RA	1,485,294	G→A	7.9%	W61* (TGG→TGA) ‡	yhdY →	amino acid ABC transporter permease
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,501,254	G→A	9.5%	A152V (GCC→GTC)	PP_1313 ←	AraC family transcriptional regulator
RA	1,504,067	T→A	7.5%	intergenic (+34/‑229)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,068	T→A	7.1%	intergenic (+35/‑228)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,506,923	A→G	6.0%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,927	G→A	7.6%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,930	T→C	7.8%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,934	C→T	7.2%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,508,078	G→A	7.8%	intergenic (+17/+45)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,079	G→T	7.6%	intergenic (+18/+44)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,080	A→C	7.5%	intergenic (+19/+43)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,081	T→C	7.8%	intergenic (+20/+42)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,539,268	G→A	7.6%	N434N (AAC→AAT) ‡	PP_1350 ←	two‑component system sensor histidine kinase/response regulator
RA	1,539,269	T→A	7.7%	N434I (AAC→ATC) ‡	PP_1350 ←	two‑component system sensor histidine kinase/response regulator
RA	1,539,270	T→C	8.0%	N434D (AAC→GAC) ‡	PP_1350 ←	two‑component system sensor histidine kinase/response regulator
RA	1,551,282	G→T	6.2%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,551,285	A→C	7.2%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,562,169	T→G	6.7%	intergenic (‑79/‑90)	pctA ← / → PP_1372	methyl‑accepting chemotaxis protein PctA/hypothetical protein
RA	1,562,170	C→G	8.0%	intergenic (‑80/‑89)	pctA ← / → PP_1372	methyl‑accepting chemotaxis protein PctA/hypothetical protein
RA	1,562,171	C→A	8.8%	intergenic (‑81/‑88)	pctA ← / → PP_1372	methyl‑accepting chemotaxis protein PctA/hypothetical protein
RA	1,567,255	A→T	5.9%	intergenic (+59/‑262)	pcaR → / → pcaK	pca regulon transcriptional regulator/4‑hydroxybenzoate transporter
RA	1,567,259	A→T	5.8%	intergenic (+63/‑258)	pcaR → / → pcaK	pca regulon transcriptional regulator/4‑hydroxybenzoate transporter
RA	1,575,198	G→A	9.6%	intergenic (‑184/+26)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,200	T→A	9.0%	intergenic (‑186/+24)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,201	T→A	8.7%	intergenic (‑187/+23)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,203	T→C	9.2%	intergenic (‑189/+21)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,580,735	C→T	12.4%	G221D (GGC→GAC)	ttgB ←	efflux pump membrane protein TtgB
RA	1,582,140	T→G	7.3%	K139Q (AAA→CAA)	ttgA ←	efflux pump periplasmic linker TtgA
RA	1,591,982	C→A	7.5%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,987	T→G	10.0%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,594,061	T→C	6.5%	intergenic (‑259/+42)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,249	T→C	6.3%	T392A (ACC→GCC)	kgtP ←	alpha‑ketoglutarate permease
RA	1,594,250	G→A	6.4%	G391G (GGC→GGT)	kgtP ←	alpha‑ketoglutarate permease
RA	1,596,813	T→A	5.0%	E66D (GAA→GAT) ‡	dctD‑III ←	C4‑dicarboxylate transport transcriptional regulator
RA	1,596,814	T→A	5.0%	E66V (GAA→GTA) ‡	dctD‑III ←	C4‑dicarboxylate transport transcriptional regulator
RA	1,608,462	G→C	6.1%	D36E (GAC→GAG) ‡	rsuA ←	16S rRNA pseudouridine(516) synthase
RA	1,608,463	T→C	6.0%	D36G (GAC→GGC) ‡	rsuA ←	16S rRNA pseudouridine(516) synthase
RA	1,625,207	G→T	17.3%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,625,208	A→C	19.7%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,628,637	C→A	7.1%	V49V (GTC→GTA)	mucB →	sigma factor AlgU regulator MucB
RA	1,628,638	T→G	7.0%	Y50D (TAC→GAC)	mucB →	sigma factor AlgU regulator MucB
RA	1,637,315	T→C	7.8%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,325	A→T	11.8%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,326	A→T	10.6%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,639,565	A→G	7.3%	intergenic (‑155/‑156)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,575	C→T	8.9%	intergenic (‑165/‑146)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,576	G→T	8.7%	intergenic (‑166/‑145)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,580	G→A	8.6%	intergenic (‑170/‑141)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,581	T→C	8.6%	intergenic (‑171/‑140)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,585	A→C	7.8%	intergenic (‑175/‑136)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,586	A→G	8.4%	intergenic (‑176/‑135)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,645,887	G→C	6.5%	S490R (AGC→AGG)	gcd ←	quinoprotein glucose dehydrogenase
RA	1,667,913	G→T	5.4%	E305D (GAG→GAT)	ffh →	signal recognition particle GTPase subunit
RA	1,683,248	C→G	11.3%	intergenic (+57/‑174)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,683,251	C→G	11.3%	intergenic (+60/‑171)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,691,325	G→C	5.7%	Q91H (CAG→CAC)	PP_1487 →	hypothetical protein
RA	1,703,248	A→G	18.9%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	18.0%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	19.9%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,704,637	T→A	6.1%	M1* (TTG→TAG) †	PP_1499 →	hypothetical protein
RA	1,707,227	G→C	10.6%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,230	G→C	10.6%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,728,303	A→T	5.7%	V24E (GTG→GAG)	PP_1521 ←	hypothetical protein
RA	1,767,817	C→T	6.5%	T619I (ACC→ATC)	PP_1577 →	lambda family tail tape meausure protein
RA	1,797,596	T→A	9.0%	V99V (GTT→GTA)	lpxA →	acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase
RA	1,822,188	G→T	6.4%	intergenic (+30/+28)	PP_mr22 → / ← fdxA	PrrB_RsmZ ncRNA/ferredoxin 1
RA	1,822,189	A→T	7.6%	intergenic (+31/+27)	PP_mr22 → / ← fdxA	PrrB_RsmZ ncRNA/ferredoxin 1
RA	1,822,190	A→C	7.6%	intergenic (+32/+26)	PP_mr22 → / ← fdxA	PrrB_RsmZ ncRNA/ferredoxin 1
RA	1,825,091	G→C	7.5%	R55G (CGC→GGC)	mutS ←	DNA mismatch repair protein MutS
RA	1,825,092	G→C	5.6%	A54A (GCC→GCG)	mutS ←	DNA mismatch repair protein MutS
RA	1,846,303:1	+A	5.3%	coding (594/1377 nt)	pfeS‑II →	histidine kinase
RA	1,884,998	G→A	5.3%	Q127Q (CAG→CAA)	PP_1692 →	hypothetical protein
RA	1,884,999	G→C	6.2%	E128Q (GAA→CAA)	PP_1692 →	hypothetical protein
RA	1,885,006	G→C	5.3%	R130P (CGG→CCG)	PP_1692 →	hypothetical protein
RA	1,885,013	G→C	5.4%	L132F (TTG→TTC)	PP_1692 →	hypothetical protein
RA	1,885,014	T→C	5.3%	L133L (TTG→CTG)	PP_1692 →	hypothetical protein
RA	1,886,602	C→T	7.1%	D423D (GAC→GAT)	rmuC →	DNA recombination limiting inversions protein
RA	1,892,225	C→A	6.3%	P156Q (CCG→CAG)	PP_1697 →	transcriptional regulator, GntR family
RA	1,892,228	T→G	6.5%	L157R (CTG→CGG)	PP_1697 →	transcriptional regulator, GntR family
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,955,965	T→A	6.1%	A201A (GCT→GCA)	PP_1753 →	DMT superfamily permease
JC	1,990,144	Δ10 bp	71.4%	coding (1394‑1403/4812 nt)	PP_1780 →	mannosyltransferase
RA	1,993,602	G→T	7.5%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,603	C→G	7.4%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,604	A→C	7.4%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	2,063,185	C→G	15.1%	intergenic (+42/‑165)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,192	C→A	13.9%	intergenic (+49/‑158)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,193	A→C	16.9%	intergenic (+50/‑157)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,194	T→C	16.2%	intergenic (+51/‑156)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,201	G→A	17.2%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,205	T→C	16.2%	intergenic (+62/‑145)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,208	G→A	16.7%	intergenic (+65/‑142)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,212	T→C	15.9%	intergenic (+69/‑138)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,219	G→A	14.8%	intergenic (+76/‑131)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,220	G→T	13.7%	intergenic (+77/‑130)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,221	T→G	21.3%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,228	C→G	16.6%	intergenic (+85/‑122)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,071,141	T→A	6.1%	intergenic (+93/+134)	PP_1846 → / ← PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
RA	2,071,142	G→C	6.0%	intergenic (+94/+133)	PP_1846 → / ← PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
RA	2,071,143	T→A	5.9%	intergenic (+95/+132)	PP_1846 → / ← PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
RA	2,075,342	G→A	8.7%	L13L (CTG→TTG)	ygaY ←	transporter YgaY
RA	2,080,054	C→G	7.2%	R242G (CGC→GGC) ‡	earP →	EF‑P arginine 32 rhamnosyl‑transferase
RA	2,080,056	C→G	6.0%	R242R (CGC→CGG) ‡	earP →	EF‑P arginine 32 rhamnosyl‑transferase
RA	2,081,114	A→G	5.3%	intergenic (+32/+83)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,081,115	A→C	5.4%	intergenic (+33/+82)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,084,111	T→A	10.2%	intergenic (+15/+14)	PP_1862 → / ← PP_1863	membrane protein/LysR family transcriptional regulator
RA	2,084,112	T→A	10.2%	intergenic (+16/+13)	PP_1862 → / ← PP_1863	membrane protein/LysR family transcriptional regulator
RA	2,084,113	T→A	10.2%	intergenic (+17/+12)	PP_1862 → / ← PP_1863	membrane protein/LysR family transcriptional regulator
RA	2,093,437	C→T	5.9%	L42L (CTG→TTG)	tpm →	thiopurine S‑methyltransferase
RA	2,134,271	A→C	7.6%	intergenic (‑37/+32)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,134,278	G→T	6.7%	intergenic (‑44/+25)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,137,007	A→T	10.0%	intergenic (‑257/‑134)	fadE ← / → gstB	medium‑long chain acyl‑CoA dehydrogenase/glutathione S‑transferase
RA	2,158,961	T→G	6.2%	intergenic (+130/‑58)	acpP → / → fabF	acyl carrier protein/beta‑ketoacyl‑ACP synthase II
RA	2,158,967	C→A	6.4%	intergenic (+136/‑52)	acpP → / → fabF	acyl carrier protein/beta‑ketoacyl‑ACP synthase II
RA	2,158,970	C→T	6.6%	intergenic (+139/‑49)	acpP → / → fabF	acyl carrier protein/beta‑ketoacyl‑ACP synthase II
RA	2,158,971	A→G	6.6%	intergenic (+140/‑48)	acpP → / → fabF	acyl carrier protein/beta‑ketoacyl‑ACP synthase II
RA	2,158,974	T→G	6.3%	intergenic (+143/‑45)	acpP → / → fabF	acyl carrier protein/beta‑ketoacyl‑ACP synthase II
RA	2,158,980	C→A	6.9%	intergenic (+149/‑39)	acpP → / → fabF	acyl carrier protein/beta‑ketoacyl‑ACP synthase II
RA	2,240,376	A→T	8.2%	D202V (GAC→GTC)	gltX →	glutamate‑‑tRNA ligase
RA	2,242,046	T→C	5.5%	intergenic (+44/‑18)	PP_t28 → / → PP_t29	tRNA‑Glu/tRNA‑Ala
RA	2,242,049	T→C	5.3%	intergenic (+47/‑15)	PP_t28 → / → PP_t29	tRNA‑Glu/tRNA‑Ala
RA	2,247,811	G→A	7.5%	S596S (AGC→AGT) ‡	PP_1983 ←	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,247,812	C→G	9.9%	S596T (AGC→ACC) ‡	PP_1983 ←	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,247,813	T→C	7.3%	S596G (AGC→GGC) ‡	PP_1983 ←	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,282,730	T→C	14.3%	intergenic (‑122/+107)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,737	T→G	16.3%	intergenic (‑129/+100)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,770	T→G	18.0%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,774	G→C	13.9%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,775	G→C	14.0%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,779	C→A	16.1%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
JC	2,306,316	Δ85 bp	70.2%	coding (157‑241/1719 nt)	PP_2028 ←	TPR repeat‑containing protein
RA	2,307,269	T→C	9.4%	K121E (AAG→GAG)	PP_2029 ←	von Willebrand factor type A domain‑containing protein
RA	2,315,665	C→G	10.2%	G96A (GGC→GCC)	PP_2037 ←	aldolase
RA	2,318,361	G→C	7.0%	R201S (AGG→AGC)	PP_2039 →	acyl‑CoA dehydrogenase
RA	2,320,485	Δ1 bp	5.8%	coding (756/945 nt)	PP_2041 ←	LysR family transcriptional regulator
RA	2,320,489	G→C	5.6%	A251G (GCC→GGC)	PP_2041 ←	LysR family transcriptional regulator
RA	2,320,492:1	+C	5.9%	coding (749/945 nt)	PP_2041 ←	LysR family transcriptional regulator
RA	2,351,589	A→C	5.8%	L36R (CTG→CGG) ‡	PP_2066 ←	GntR family transcriptional regulator
RA	2,351,590	G→T	5.6%	L36M (CTG→ATG) ‡	PP_2066 ←	GntR family transcriptional regulator
RA	2,351,597	C→G	6.2%	V33V (GTG→GTC)	PP_2066 ←	GntR family transcriptional regulator
RA	2,369,767	T→C	6.1%	L862P (CTG→CCG) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,369,768	G→C	6.2%	L862L (CTG→CTC) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,372,084	A→C	7.9%	intergenic (+36/+76)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,385,793	Δ1 bp	5.9%	coding (85/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,385,797:1	+A	5.8%	coding (81/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,386,015	G→C	5.8%	G363G (GGC→GGG)	PP_2094 ←	nitrate‑binding protein NasS
RA	2,386,021	G→C	6.0%	C361W (TGC→TGG)	PP_2094 ←	nitrate‑binding protein NasS
RA	2,386,025	G→C	5.8%	A360G (GCT→GGT)	PP_2094 ←	nitrate‑binding protein NasS
RA	2,392,617	C→G	8.0%	I382M (ATC→ATG)	PP_2097 →	sensory box protein
RA	2,416,554	A→T	5.3%	intergenic (+87/+28)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,416,555	A→T	6.2%	intergenic (+88/+27)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,437,197	G→A	8.3%	E39E (GAG→GAA)	fadB →	enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
RA	2,441,066	G→T	6.1%	K68N (AAG→AAT)	topA →	DNA topoisomerase I
RA	2,444,629	G→A	5.6%	A87A (GCC→GCT)	sulA ←	cell division inhibitor SulA
RA	2,444,635	G→A	5.9%	T85T (ACC→ACT) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,636	G→C	6.1%	T85S (ACC→AGC) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,637	T→C	6.1%	T85A (ACC→GCC) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,643	T→C	6.2%	S83G (AGC→GGC)	sulA ←	cell division inhibitor SulA
RA	2,455,658	G→C	6.1%	V125L (GTG→CTG) ‡	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,455,659	T→A	6.1%	V125E (GTG→GAG) ‡	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,455,660	G→C	6.6%	V125V (GTG→GTC) ‡	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,455,666	T→C	6.5%	G127G (GGT→GGC)	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,475,280	A→G	7.8%	intergenic (‑79/+78)	tal ← / ← dusA	transaldolase/tRNA dihydrouridine synthase DusA
RA	2,475,283	C→A	8.0%	intergenic (‑82/+75)	tal ← / ← dusA	transaldolase/tRNA dihydrouridine synthase DusA
RA	2,475,286	T→G	7.8%	intergenic (‑85/+72)	tal ← / ← dusA	transaldolase/tRNA dihydrouridine synthase DusA
RA	2,478,840	G→A	6.9%	intergenic (+93/+352)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,841	C→A	6.7%	intergenic (+94/+351)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,845	G→C	6.5%	intergenic (+98/+347)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,849	T→G	6.2%	intergenic (+102/+343)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,850	T→C	6.4%	intergenic (+103/+342)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,489,582	G→T	6.0%	T193T (ACG→ACT)	PP_2184 →	formate dehydrogenase subunit beta
RA	2,498,898	Δ1 bp	5.7%	coding (799/2454 nt)	PP_2193 →	ferric siderophore receptor
RA	2,515,477	C→A	6.5%	A351S (GCC→TCC)	phnW ←	2‑aminoethylphosphonate‑‑pyruvate transaminase
RA	2,515,479	T→G	6.6%	Q350P (CAG→CCG)	phnW ←	2‑aminoethylphosphonate‑‑pyruvate transaminase
RA	2,515,486	C→A	6.7%	G348C (GGC→TGC)	phnW ←	2‑aminoethylphosphonate‑‑pyruvate transaminase
RA	2,540,809	T→A	10.6%	intergenic (+22/+27)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,810	G→C	10.4%	intergenic (+23/+26)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,811	T→A	10.2%	intergenic (+24/+25)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,559,989	C→A	6.6%	intergenic (+14/‑50)	fepA → / → PP_2243	ferric enterobactin transport system outer membrane subunit/hypothetical protein
RA	2,559,990	C→G	7.0%	intergenic (+15/‑49)	fepA → / → PP_2243	ferric enterobactin transport system outer membrane subunit/hypothetical protein
RA	2,559,991	T→G	7.0%	intergenic (+16/‑48)	fepA → / → PP_2243	ferric enterobactin transport system outer membrane subunit/hypothetical protein
RA	2,590,077	G→C	8.2%	A42P (GCG→CCG)	PP_2267 →	single‑stranded DNA‑binding protein
RA	2,621,330	G→C	8.5%	D49H (GAT→CAT)	PP_2294 →	hypothetical protein
RA	2,622,333	C→T	12.1%	intergenic (+124/‑224)	PP_5515 → / → PP_5516	hypothetical protein/hypothetical protein
RA	2,626,456	A→C	7.7%	E37A (GAG→GCG)	PP_2298 →	hypothetical protein
RA	2,626,460	G→T	7.8%	E38D (GAG→GAT)	PP_2298 →	hypothetical protein
RA	2,626,461	A→C	8.6%	I39L (ATC→CTC)	PP_2298 →	hypothetical protein
RA	2,628,386	A→C	7.5%	A16A (GCA→GCC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,631,143	T→A	7.1%	L203Q (CTG→CAG)	lon‑II →	DNA‑binding ATP‑dependent protease
RA	2,682,289	Δ1 bp	7.4%	coding (855/1890 nt)	prpE →	propionyl‑CoA synthetase
RA	2,711,618	G→A	11.1%	T1162T (ACC→ACT) ‡	metH ←	cobalamin‑dependent methionine synthase
RA	2,711,619	G→C	11.0%	T1162S (ACC→AGC) ‡	metH ←	cobalamin‑dependent methionine synthase
RA	2,711,620	T→C	11.1%	T1162A (ACC→GCC) ‡	metH ←	cobalamin‑dependent methionine synthase
RA	2,719,255	Δ1 bp	6.4%	coding (382/585 nt)	nfuA →	Fe/S biogenesis protein NfuA
RA	2,742,917	C→T	9.7%	H5Y (CAC→TAC) ‡	PP_2397 →	EF hand domain‑containing protein
RA	2,742,918	A→G	9.7%	H5R (CAC→CGC) ‡	PP_2397 →	EF hand domain‑containing protein
RA	2,746,707	A→G	7.8%	S354S (AGT→AGC)	PP_2402 ←	sensor histidine kinase
RA	2,763,486	G→A	6.6%	A142V (GCC→GTC)	PP_2417 ←	iron ABC transporter permease
RA	2,776,107	A→C	5.7%	K152Q (AAG→CAG)	sotB →	sugar efflux transporter
RA	2,776,110	G→C	6.7%	A153P (GCG→CCG) ‡	sotB →	sugar efflux transporter
RA	2,776,111	C→G	5.4%	A153G (GCG→GGG) ‡	sotB →	sugar efflux transporter
RA	2,776,112	G→C	5.4%	A153A (GCG→GCC) ‡	sotB →	sugar efflux transporter
RA	2,776,115	G→T	5.3%	L154L (CTG→CTT)	sotB →	sugar efflux transporter
RA	2,780,943	C→A	5.7%	P81T (CCC→ACC)	PP_2434 →	hypothetical protein
RA	2,780,949	T→C	5.5%	W83R (TGG→CGG)	PP_2434 →	hypothetical protein
RA	2,780,952	T→G	5.5%	S84A (TCT→GCT)	PP_2434 →	hypothetical protein
RA	2,787,623	G→A	9.8%	intergenic (+70/‑55)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,629	C→G	9.4%	intergenic (+76/‑49)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,630	C→G	9.4%	intergenic (+77/‑48)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,636	T→C	10.7%	intergenic (+83/‑42)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,793,755	A→C	11.8%	intergenic (+64/+63)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,804,385	G→C	7.3%	V66V (GTG→GTC)	rbsR →	DNA‑binding transcriptional repressor
RA	2,804,796	C→G	7.7%	A203A (GCC→GCG)	rbsR →	DNA‑binding transcriptional repressor
RA	2,816,594	T→A	7.0%	I21N (ATT→AAT)	PP_2472 →	MerR family transcriptional regulator
RA	2,822,180	T→A	8.2%	D153E (GAT→GAA)	PP_2475 →	TetR family transcriptional regulator
RA	2,852,188	G→T	5.9%	intergenic (+99/+106)	PP_5531 → / ← PP_2505	hypothetical protein/GAF domain/GGDEF domain‑containing protein
RA	2,852,196	T→C	5.2%	intergenic (+107/+98)	PP_5531 → / ← PP_2505	hypothetical protein/GAF domain/GGDEF domain‑containing protein
RA	2,852,197	A→C	5.2%	intergenic (+108/+97)	PP_5531 → / ← PP_2505	hypothetical protein/GAF domain/GGDEF domain‑containing protein
RA	2,852,397	T→A	7.7%	Q312L (CAG→CTG)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,874,886	C→G	7.6%	G333R (GGC→CGC)	PP_2528 ←	O‑acetylhomoserine (thiol)‑lyase
RA	2,890,438	T→C	6.6%	R58G (AGG→GGG)	PP_2544 ←	hypothetical protein
RA	2,915,464	T→C	9.9%	L1495P (CTG→CCG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,951,334	G→C	13.0%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	12.6%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	12.5%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	9.0%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,978,497	T→A	10.3%	intergenic (‑143/+99)	PP_2604 ← / ← PP_2605	major facilitator family transporter/hypothetical protein
RA	2,998,928	T→C	7.4%	R20R (CGA→CGG)	PP_2622 ←	hypothetical protein
RA	3,012,712	A→G	6.1%	S55G (AGC→GGC)	PP_2633 →	hypothetical protein
RA	3,021,030	A→T	9.1%	Q523L (CAG→CTG)	PP_2638 →	cellulose synthase operon protein C
RA	3,030,417	G→C	9.1%	intergenic (+417/‑277)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,420	G→C	8.7%	intergenic (+420/‑274)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,722	A→G	5.9%	Q10R (CAG→CGG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,041,395	G→C	8.2%	A199A (GCC→GCG) ‡	PP_2653 ←	Cro/CI family transcriptional regulator
RA	3,041,396	G→C	8.2%	A199G (GCC→GGC) ‡	PP_2653 ←	Cro/CI family transcriptional regulator
RA	3,046,618	C→A	7.5%	P102H (CCT→CAT)	pstB‑I →	phosphate ABC transporter ATP‑binding protein
RA	3,108,466	C→T	8.9%	W55* (TGG→TGA)	PP_2721 ←	membrane protein
RA	3,132,874	T→C	6.8%	W24R (TGG→CGG)	PP_2750 →	branched‑chain amino acid ABC transporter permease
RA	3,155,364	C→G	6.9%	G300A (GGC→GCC)	PP_2771 ←	sigma‑54 dependent transcriptional regulator
RA	3,164,096	T→G	9.6%	C296G (TGC→GGC) ‡	PP_2778 →	3‑oxoacyl‑ACP synthase
RA	3,164,097	G→T	9.0%	C296F (TGC→TTC) ‡	PP_2778 →	3‑oxoacyl‑ACP synthase
RA	3,164,102	A→C	7.6%	T298P (ACG→CCG) ‡	PP_2778 →	3‑oxoacyl‑ACP synthase
RA	3,164,103	C→A	7.7%	T298K (ACG→AAG) ‡	PP_2778 →	3‑oxoacyl‑ACP synthase
RA	3,204,750	G→A	7.1%	P18P (CCG→CCA)	PP_2811 →	hypothetical protein
RA	3,204,754	G→C	7.5%	A20P (GCA→CCA)	PP_2811 →	hypothetical protein
RA	3,212,276	T→C	10.7%	*189W (TGA→TGG) ‡	PP_2816 ←	transcriptional regulator NfxB
RA	3,212,278	A→T	10.2%	*189R (TGA→AGA) ‡	PP_2816 ←	transcriptional regulator NfxB
RA	3,212,281	A→T	9.0%	Y188N (TAT→AAT)	PP_2816 ←	transcriptional regulator NfxB
RA	3,212,283	G→A	9.8%	P187L (CCC→CTC)	PP_2816 ←	transcriptional regulator NfxB
RA	3,212,977	T→A	7.7%	M15K (ATG→AAG)	mexC →	multidrug RND transporter membrane fusion protein MexC
RA	3,212,988	T→A	7.8%	L19M (TTG→ATG)	mexC →	multidrug RND transporter membrane fusion protein MexC
RA	3,266,102	T→C	9.5%	intergenic (+19/+40)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,103	C→T	9.5%	intergenic (+20/+39)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,111	G→C	11.4%	intergenic (+28/+31)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,113	A→T	11.3%	intergenic (+30/+29)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,114	A→T	11.3%	intergenic (+31/+28)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,116	G→C	11.0%	intergenic (+33/+26)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,283,990	A→G	6.2%	W79R (TGG→CGG)	PP_2885 ←	transporter
RA	3,285,434	A→T	6.5%	V144D (GTC→GAC)	PP_2887 ←	catalase‑like peroxidase
RA	3,313,533	A→T	10.2%	D238V (GAC→GTC)	hemB →	5‑aminolevulinate dehydratase
RA	3,316,912	G→C	6.2%	intergenic (‑115/+58)	ribC ← / ← treSA	riboflavin synthase/trehalose synthase A
RA	3,318,758	G→A	7.7%	T93T (ACC→ACT)	treSA ←	trehalose synthase A
RA	3,332,746	A→T	8.5%	V120E (GTA→GAA)	PP_2930 ←	L‑serine dehydratase
RA	3,346,306	C→T	6.5%	R65H (CGC→CAC)	PP_2942 ←	two‑component system response regulator
RA	3,367,360	G→C	5.6%	L222L (CTG→CTC)	PP_2964 →	transposase
RA	3,367,361	G→C	5.6%	E223Q (GAG→CAG)	PP_2964 →	transposase
RA	3,378,147	G→C	5.2%	E66Q (GAG→CAG)	PP_2978 →	hypothetical protein
RA	3,393,647	C→G	7.7%	A254P (GCC→CCC)	PP_2997 ←	protein CnmA
RA	3,393,652	G→C	8.0%	T252R (ACA→AGA) ‡	PP_2997 ←	protein CnmA
RA	3,393,653	T→A	8.0%	T252S (ACA→TCA) ‡	PP_2997 ←	protein CnmA
RA	3,393,657	C→G	7.7%	G250G (GGG→GGC)	PP_2997 ←	protein CnmA
RA	3,422,810	C→T	11.3%	A323V (GCT→GTT) ‡	PP_3038 →	TraC domain‑containing protein
RA	3,422,811	T→A	11.4%	A323A (GCT→GCA) ‡	PP_3038 →	TraC domain‑containing protein
RA	3,422,812	A→G	11.4%	T324A (ACC→GCC)	PP_3038 →	TraC domain‑containing protein
RA	3,448,819	C→A	7.4%	P6H (CCC→CAC)	PP_3067 →	hypothetical protein
RA	3,451,344	C→A	5.1%	L701F (TTG→TTT)	PP_3069 ←	outer membrane autotransporter
RA	3,475,226	T→G	5.7%	D496A (GAC→GCC)	PP_3087 ←	excinuclease ABC subunit A
RA	3,491,487	T→C	8.6%	E311G (GAG→GGG)	PP_3096 ←	hypothetical protein
RA	3,493,653	G→T	6.9%	L184M (CTG→ATG)	PP_3097 ←	hypothetical protein
RA	3,494,572	T→G	5.4%	K38T (AAG→ACG)	PP_3098 ←	hypothetical protein
RA	3,494,579	C→A	5.3%	E36* (GAG→TAG)	PP_3098 ←	hypothetical protein
RA	3,505,443	C→G	6.3%	G67R (GGC→CGC)	PP_3103 ←	hypothetical protein
RA	3,520,081	T→A	8.8%	intergenic (+700/‑180)	PP_5580 → / → PP_5582	hypothetical protein/hypothetical protein
RA	3,534,762	T→G	6.7%	intergenic (+49/‑106)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,768	C→A	6.5%	intergenic (+55/‑100)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,542,318	A→G	7.4%	Y135Y (TAT→TAC)	galE ←	UDP‑glucose 4‑epimerase
RA	3,580,628	A→G	5.5%	I255V (ATC→GTC) ‡	benR →	BenABC operon transcriptional activator
RA	3,580,630	C→G	5.6%	I255M (ATC→ATG) ‡	benR →	BenABC operon transcriptional activator
RA	3,624,144	G→C	7.4%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,637,154	A→G	7.3%	H361R (CAC→CGC)	PP_3203 →	MFS transporter
RA	3,650,015	T→A	6.3%	intergenic (+1492/+199)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,650,019	A→T	8.4%	intergenic (+1496/+195)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,701,985	C→A	6.8%	L139M (CTG→ATG) ‡	PP_3267 →	Clp protease
RA	3,701,987	G→A	6.7%	L139L (CTG→CTA) ‡	PP_3267 →	Clp protease
RA	3,701,988	T→C	6.7%	Y140H (TAT→CAT) ‡	PP_3267 →	Clp protease
RA	3,701,990	T→G	6.4%	Y140* (TAT→TAG) ‡	PP_3267 →	Clp protease
RA	3,717,845	T→G	10.8%	N250H (AAC→CAC)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,717,846	C→A	10.3%	V249V (GTG→GTT)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,977	C→T	7.2%	G142S (GGC→AGC)	paaF ←	enoyl‑CoA hydratase/isomerase
RA	3,718,979	C→G	7.2%	G141A (GGC→GCC)	paaF ←	enoyl‑CoA hydratase/isomerase
RA	3,718,981	A→G	6.8%	A140A (GCT→GCC)	paaF ←	enoyl‑CoA hydratase/isomerase
RA	3,722,424	G→A	7.2%	Q11* (CAG→TAG)	PP_5598 ←	hypothetical protein
RA	3,730,931	G→C	7.0%	intergenic (+226/‑172)	PP_3297 → / → PP_3298	hypothetical protein/CinA domain‑containing protein
RA	3,731,846	A→G	9.2%	R465R (CGT→CGC)	PP_3299 ←	lipoprotein
RA	3,731,849	C→T	9.4%	A464A (GCG→GCA)	PP_3299 ←	lipoprotein
RA	3,735,139	Δ1 bp	13.6%	coding (36/3093 nt)	PP_3302 →	RND family transporter
RA	3,735,143:1	+T	14.3%	coding (40/3093 nt)	PP_3302 →	RND family transporter
RA	3,761,723	G→C	5.1%	E357D (GAG→GAC)	PP_3325 →	ferric siderophore receptor
RA	3,763,083	C→T	14.8%	T109I (ACC→ATC)	PP_3326 →	hypothetical protein
RA	3,763,086	A→T	14.8%	H110L (CAT→CTT)	PP_3326 →	hypothetical protein
RA	3,763,089	T→A	15.1%	V111D (GTC→GAC)	PP_3326 →	hypothetical protein
RA	3,763,092	A→T	12.5%	K112M (AAG→ATG)	PP_3326 →	hypothetical protein
RA	3,763,095	A→G	10.2%	D113G (GAT→GGT)	PP_3326 →	hypothetical protein
RA	3,763,502	A→G	19.7%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,504	G→C	21.9%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,506	C→T	20.3%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,772,151	G→C	5.0%	intergenic (+70/‑237)	PP_3331 → / → PP_3332	membrane protein/cytochrome c‑type protein
RA	3,772,156	G→C	6.0%	intergenic (+75/‑232)	PP_3331 → / → PP_3332	membrane protein/cytochrome c‑type protein
RA	3,773,922	A→T	5.9%	T209S (ACA→TCA)	PP_5743 →	TonB‑dependent receptor protein
RA	3,785,051	C→T	8.5%	R82R (CGC→CGT)	PP_3348 →	GGDEF domain‑containing protein
RA	3,785,052	A→T	9.9%	T83S (ACG→TCG)	PP_3348 →	GGDEF domain‑containing protein
RA	3,785,059	A→T	8.1%	E85V (GAA→GTA) ‡	PP_3348 →	GGDEF domain‑containing protein
RA	3,785,060	A→G	8.2%	E85E (GAA→GAG) ‡	PP_3348 →	GGDEF domain‑containing protein
RA	3,787,501	Δ1 bp	40.0%	coding (1134/1392 nt)	PP_3350 ←	hypothetical protein
RA	3,787,502	Δ1 bp	40.0%	coding (1133/1392 nt)	PP_3350 ←	hypothetical protein
RA	3,796,131	A→C	5.1%	L108R (CTG→CGG)	fcs ←	feruloyl‑CoA‑synthetase
RA	3,800,839	A→G	8.1%	intergenic (+49/+30)	PP_3360 → / ← PP_3361	membrane protein/aminotransferase
RA	3,800,844	C→T	6.7%	intergenic (+54/+25)	PP_3360 → / ← PP_3361	membrane protein/aminotransferase
RA	3,804,020	C→G	8.4%	intergenic (‑104/‑40)	PP_3361 ← / → PP_3362	aminotransferase/AsnC family transcriptional regulator
RA	3,812,662	T→A	5.2%	I329N (ATT→AAT)	PP_3368 →	MFS transporter
RA	3,844,924	A→T	7.9%	L237Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,928	C→G	7.9%	G236R (GGC→CGC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,929	C→G	7.9%	A235A (GCG→GCC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,933	A→T	7.7%	L234Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,853,118	T→A	11.5%	I169N (ATT→AAT)	alkB →	alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase
RA	3,853,765	C→T	7.3%	intergenic (+48/+34)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,771	T→C	6.8%	intergenic (+54/+28)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,772	G→A	7.1%	intergenic (+55/+27)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,778	A→G	7.2%	intergenic (+61/+21)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,863,777	G→C	5.2%	P900P (CCG→CCC)	PP_3413 →	two‑component system sensor histidine kinase/response regulator
RA	3,871,607	G→C	7.8%	H258Q (CAC→CAG)	PP_3420 ←	sensor histidine kinase
RA	3,914,839	A→G	7.8%	intergenic (‑53/‑193)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,965,577	A→T	6.9%	M128L (ATG→TTG)	PP_3496 →	endoribonuclease L‑PSP
RA	3,980,280	G→A	7.9%	D117D (GAC→GAT) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,980,282	C→G	7.9%	D117H (GAC→CAC) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,980,284	T→C	7.8%	D116G (GAT→GGT)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,980,735	A→T	6.5%	W323R (TGG→AGG)	cobW ←	adenosylcobalamin biosynthesis protein CobW
RA	3,996,897	G→T	5.3%	P89H (CCT→CAT)	PP_3525 ←	hypothetical protein
RA	4,021,365	C→G	12.2%	*314S (TGA→TCA)	PP_3547 ←	NAD(P)‑binding oxidoreductase
RA	4,033,501	G→C	8.2%	T401T (ACC→ACG) ‡	PP_3556 ←	membrane protein
RA	4,033,502	G→C	8.2%	T401S (ACC→AGC) ‡	PP_3556 ←	membrane protein
RA	4,042,008	T→A	6.3%	D32E (GAT→GAA)	PP_3563 →	hypothetical protein
RA	4,042,321	C→A	8.1%	L137I (CTC→ATC) ‡	PP_3563 →	hypothetical protein
RA	4,042,322	T→G	8.2%	L137R (CTC→CGC) ‡	PP_3563 →	hypothetical protein
RA	4,044,479	G→T	5.6%	intergenic (+20/+29)	PP_3565 → / ← PP_3566	LysE family transporter/MFS transporter
RA	4,044,481	A→C	5.6%	intergenic (+22/+27)	PP_3565 → / ← PP_3566	LysE family transporter/MFS transporter
RA	4,049,907	A→G	26.6%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,910	C→G	27.5%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,913	C→T	25.3%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,084,744	T→A	5.8%	L57Q (CTG→CAG) ‡	PP_3595 →	amino acid ABC transporter permease
RA	4,084,745	G→T	5.7%	L57L (CTG→CTT) ‡	PP_3595 →	amino acid ABC transporter permease
RA	4,114,050	T→C	6.4%	W232R (TGG→CGG)	PP_3619 →	hypothetical protein
RA	4,132,855	A→G	5.8%	L102L (CTT→CTC)	PP_3636 ←	sulfonate ABC transporter substrate‑binding protein
RA	4,142,680	C→T	8.9%	I271I (ATC→ATT)	PP_3646 →	aldehyde dehydrogenase family protein
RA	4,142,681	A→G	8.9%	N272D (AAT→GAT)	PP_3646 →	aldehyde dehydrogenase family protein
RA	4,144,163	C→A	8.2%	A65D (GCC→GAC)	PP_3648 →	carboxymuconolactone decarboxylase family protein
RA	4,205,671	G→A	7.1%	A702V (GCA→GTA)	PP_3691 ←	DNA helicase‑related protein
RA	4,229,964	G→A	8.8%	R82W (CGG→TGG)	PP_3707 ←	hypothetical protein
RA	4,252,194	C→A	6.0%	intergenic (‑162/+78)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,202	G→C	6.0%	intergenic (‑170/+70)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,205	G→C	6.7%	intergenic (‑173/+67)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,213	T→G	5.5%	intergenic (‑181/+59)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,273,050	G→T	8.0%	intergenic (+26/+35)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,273,053	G→A	8.0%	intergenic (+29/+32)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,273,055	T→C	7.8%	intergenic (+31/+30)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,273,058	A→C	7.0%	intergenic (+34/+27)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,275,209	A→C	5.3%	D389A (GAC→GCC)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,289,430	T→G	9.1%	K1053Q (AAG→CAG)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,432	T→A	9.1%	H1052L (CAC→CTC)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,435	T→A	8.9%	E1051V (GAG→GTG)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,437	C→A	10.1%	L1050L (CTG→CTT)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,311,085	C→T	6.5%	A266V (GCA→GTA)	syrB →	syringomycin biosynthesis protein 2
RA	4,314,731	Δ1 bp	6.5%	coding (933/1209 nt)	aspC →	aminotransferase
RA	4,314,735:1	+T	6.5%	coding (937/1209 nt)	aspC →	aminotransferase
RA	4,316,022	A→C	14.6%	A35A (GCA→GCC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,025	G→T	13.3%	A36A (GCG→GCT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,328,949	G→T	13.0%	G66V (GGC→GTC)	PP_3799 →	hypothetical protein
RA	4,328,952	G→C	14.7%	G67A (GGC→GCC)	PP_3799 →	hypothetical protein
RA	4,338,493	A→T	15.4%	intergenic (+113/+29)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,338,494	A→T	11.3%	intergenic (+114/+28)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,348,705	A→G	43.3%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,388,832	T→C	8.4%	I637V (ATC→GTC)	PP_3865 ←	tail protein
RA	4,388,833	G→C	8.6%	T636T (ACC→ACG) ‡	PP_3865 ←	tail protein
RA	4,388,834	G→A	8.5%	T636I (ACC→ATC) ‡	PP_3865 ←	tail protein
RA	4,405,314	C→T	10.9%	G83R (GGG→AGG)	PP_3886 ←	hypothetical protein
RA	4,405,320	T→C	10.5%	M81V (ATG→GTG)	PP_3886 ←	hypothetical protein
RA	4,405,321	G→A	10.5%	H80H (CAC→CAT)	PP_3886 ←	hypothetical protein
RA	4,405,327	A→G	8.9%	P78P (CCT→CCC)	PP_3886 ←	hypothetical protein
RA	4,408,307	A→G	5.4%	intergenic (‑24/+125)	PP_3890 ← / ← ybcO	hypothetical protein/hypothetical protein
RA	4,411,648	G→T	5.8%	A10A (GCC→GCA)	PP_3895 ←	regulatory protein Cro
RA	4,425,439	A→G	6.8%	intergenic (‑497/‑303)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,425,441	G→C	6.7%	intergenic (‑499/‑301)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,425,443	C→T	6.6%	intergenic (‑501/‑299)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,444,691	Δ1 bp	5.6%	coding (141/642 nt)	nicF ←	maleamate amidohydrolase
RA	4,449,262	A→C	9.9%	E85A (GAG→GCG)	nicR →	HTH‑type transcriptional repressor NicR
RA	4,449,277	G→T	8.2%	R90L (CGC→CTC)	nicR →	HTH‑type transcriptional repressor NicR
RA	4,450,335	T→A	6.3%	C137S (TGC→AGC)	nicA →	nicotinate dehydrogenase subunit A
RA	4,477,817	G→C	6.6%	H59D (CAT→GAT)	PP_3968 ←	sensor histidine kinase
RA	4,477,818	C→A	5.8%	A58A (GCG→GCT)	PP_3968 ←	sensor histidine kinase
RA	4,517,232	A→C	8.6%	intergenic (+69/+17)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,233	A→T	8.6%	intergenic (+70/+16)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,234	G→T	8.7%	intergenic (+71/+15)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,520,454	A→T	7.9%	intergenic (+45/+27)	cspD → / ← icd	DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase
RA	4,520,464	A→G	5.6%	intergenic (+55/+17)	cspD → / ← icd	DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase
RA	4,532,022	T→G	6.0%	W621G (TGG→GGG)	topB →	DNA topoisomerase III
RA	4,543,592	C→G	6.4%	S9S (TCC→TCG)	rnz →	ribonuclease Z
RA	4,543,595	C→G	6.3%	A10A (GCC→GCG)	rnz →	ribonuclease Z
RA	4,546,047	C→T	7.4%	A433A (GCG→GCA)	pydP ←	NCS1 family transporter PydP
RA	4,546,755	C→T	8.1%	P197P (CCG→CCA)	pydP ←	NCS1 family transporter PydP
RA	4,547,134	T→A	6.0%	Y71F (TAC→TTC)	pydP ←	NCS1 family transporter PydP
RA	4,549,179	A→G	5.5%	intergenic (+51/‑85)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,549,180:1	+C	5.5%	intergenic (+52/‑84)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,549,188	A→G	5.4%	intergenic (+60/‑76)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,549,191	Δ1 bp	5.4%	intergenic (+63/‑73)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	68.0%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,057:1	+C	32.0%	intergenic (+140/+75)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,593,712	T→A	11.1%	intergenic (+18/+281)	mccA → / ← PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator
RA	4,593,713	T→A	11.1%	intergenic (+19/+280)	mccA → / ← PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator
RA	4,593,714	T→A	11.2%	intergenic (+20/+279)	mccA → / ← PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator
RA	4,612,655	A→T	7.1%	intergenic (+1617/‑490)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,659	G→T	7.1%	intergenic (+1621/‑486)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,663	G→C	6.9%	intergenic (+1625/‑482)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,664	T→A	6.9%	intergenic (+1626/‑481)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,665	G→C	7.0%	intergenic (+1627/‑480)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,669	A→C	7.2%	intergenic (+1631/‑476)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,673	A→T	7.4%	intergenic (+1635/‑472)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,615,343	G→A	7.9%	V572M (GTG→ATG) ‡	PP_4085 →	rhs family protein
RA	4,615,345	G→C	7.6%	V572V (GTG→GTC) ‡	PP_4085 →	rhs family protein
RA	4,615,347	T→C	7.6%	I573T (ATT→ACT)	PP_4085 →	rhs family protein
RA	4,616,319	A→G	5.7%	D897G (GAC→GGC)	PP_4085 →	rhs family protein
RA	4,616,385	A→T	5.4%	E919V (GAG→GTG)	PP_4085 →	rhs family protein
RA	4,635,500	C→A	61.9%	E86* (GAA→TAA)	uvrY ←	BarA/UvrY two‑componenent system response regulator
RA	4,664,245	C→A	6.7%	A133D (GCC→GAC)	nuoH →	NADH‑quinone oxidoreductase subunit H
RA	4,664,248	G→A	8.1%	G134D (GGC→GAC)	nuoH →	NADH‑quinone oxidoreductase subunit H
RA	4,666,503	T→C	7.1%	M90T (ATG→ACG)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,666,506	T→C	7.2%	L91P (CTC→CCC) ‡	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,666,507	C→G	7.5%	L91L (CTC→CTG) ‡	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,666,508	G→A	7.5%	G92S (GGC→AGC)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,666,511	G→A	8.1%	V93M (GTG→ATG)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,681,789:1	+C	10.0%	coding (79/1431 nt)	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,681,795	T→A	9.7%	L29M (TTG→ATG) ‡	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,681,796	T→A	10.0%	L29* (TTG→TAG) ‡	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,681,810	A→G	8.2%	S34G (AGC→GGC)	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,704,244	T→C	5.0%	H307R (CAT→CGT)	kdpA ←	potassium‑transporting ATPase subunit A
RA	4,705,690	C→A	6.4%	E268* (GAA→TAA)	PP_4162 ←	membrane protein
RA	4,709,214	C→T	10.2%	A101T (GCG→ACG)	PP_4166 ←	hypothetical protein
RA	4,709,217	C→G	10.6%	E100Q (GAG→CAG)	PP_4166 ←	hypothetical protein
RA	4,709,220	G→C	12.6%	R99G (CGC→GGC)	PP_4166 ←	hypothetical protein
RA	4,709,221	G→C	11.3%	A98A (GCC→GCG)	PP_4166 ←	hypothetical protein
RA	4,709,224	C→G	11.1%	L97L (CTG→CTC)	PP_4166 ←	hypothetical protein
RA	4,709,227	A→G	10.9%	R96R (CGT→CGC)	PP_4166 ←	hypothetical protein
RA	4,710,169	G→T	5.9%	A104D (GCC→GAC)	PP_4168 ←	hypothetical protein
RA	4,715,625	A→T	24.9%	M286L (ATG→TTG)	PP_4173 →	two‑component system sensor histidine kinase/response regulator
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,839	C→G	16.3%	intergenic (+76/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,841	T→A	19.9%	intergenic (+78/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,844	C→G	18.1%	intergenic (+81/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,742,303	A→G	6.5%	V11A (GTG→GCG)	PP_4196 ←	hypothetical protein
RA	4,748,512	G→C	7.6%	L72L (CTG→CTC)	PP_4203 →	ubiquinone oxidoreductase electron transfer flavoprotein
RA	4,748,518	C→A	10.2%	P74P (CCC→CCA)	PP_4203 →	ubiquinone oxidoreductase electron transfer flavoprotein
RA	4,748,520	A→T	6.9%	D75V (GAC→GTC)	PP_4203 →	ubiquinone oxidoreductase electron transfer flavoprotein
RA	4,748,528	G→C	6.9%	E78Q (GAG→CAG)	PP_4203 →	ubiquinone oxidoreductase electron transfer flavoprotein
RA	4,773,112	T→G	13.0%	N2052T (AAC→ACC)	pvdD ←	non‑ribosomal peptide synthetase
RA	4,773,114	G→C	9.5%	A2051A (GCC→GCG) ‡	pvdD ←	non‑ribosomal peptide synthetase
RA	4,773,115	G→A	9.4%	A2051V (GCC→GTC) ‡	pvdD ←	non‑ribosomal peptide synthetase
RA	4,773,117	G→C	9.7%	T2050T (ACC→ACG) ‡	pvdD ←	non‑ribosomal peptide synthetase
RA	4,773,119	T→C	9.7%	T2050A (ACC→GCC) ‡	pvdD ←	non‑ribosomal peptide synthetase
RA	4,773,120	G→C	9.5%	V2049V (GTC→GTG) ‡	pvdD ←	non‑ribosomal peptide synthetase
RA	4,773,122	C→A	9.0%	V2049F (GTC→TTC) ‡	pvdD ←	non‑ribosomal peptide synthetase
RA	4,773,136	A→C	5.6%	L2044R (CTC→CGC)	pvdD ←	non‑ribosomal peptide synthetase
RA	4,796,604	A→G	8.1%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,612	C→T	14.8%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,614	G→C	14.9%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,617	G→C	15.4%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	15.7%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	13.3%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,797,710	G→A	9.4%	I91I (ATC→ATT) ‡	PP_4224 ←	sensor histidine kinase
RA	4,797,711	A→T	9.4%	I91N (ATC→AAC) ‡	PP_4224 ←	sensor histidine kinase
RA	4,797,712	T→C	9.6%	I91V (ATC→GTC) ‡	PP_4224 ←	sensor histidine kinase
RA	4,842,896	Δ1 bp	17.6%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,843,873	C→A	7.8%	L241M (CTG→ATG) ‡	PP_4259 →	iron‑sulfur cluster‑binding protein
RA	4,843,875	G→C	7.7%	L241L (CTG→CTC) ‡	PP_4259 →	iron‑sulfur cluster‑binding protein
RA	4,843,877	T→G	7.7%	I242S (ATC→AGC)	PP_4259 →	iron‑sulfur cluster‑binding protein
RA	4,858,146	T→C	8.2%	L66P (CTG→CCG)	PP_4273 →	MerR family transcriptional regulator
RA	4,858,150	G→C	7.8%	V67V (GTG→GTC)	PP_4273 →	MerR family transcriptional regulator
RA	4,860,809	G→T	6.4%	L81M (CTG→ATG)	ligA ←	DNA ligase
RA	4,860,813	G→C	5.7%	L79L (CTC→CTG)	ligA ←	DNA ligase
RA	4,860,817	A→C	6.2%	M78R (ATG→AGG)	ligA ←	DNA ligase
RA	4,866,023	G→T	8.0%	R171R (CGC→CGA)	PP_4277 ←	GntR family transcriptional regulator
RA	4,866,030	T→A	7.7%	D169V (GAC→GTC)	PP_4277 ←	GntR family transcriptional regulator
RA	4,866,037	A→C	8.1%	S167A (TCG→GCG)	PP_4277 ←	GntR family transcriptional regulator
RA	4,900,051	G→A	7.5%	intergenic (+12/‑486)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,065	A→G	10.7%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,069	G→A	9.9%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,070	T→C	10.1%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,074	C→T	10.3%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,919,040	Δ1 bp	6.3%	coding (1439/1557 nt)	PP_4328 →	hypothetical protein
RA	4,919,044:1	+A	6.7%	coding (1443/1557 nt)	PP_4328 →	hypothetical protein
RA	4,928,017	A→G	7.0%	S719P (TCC→CCC)	cheA ←	chemotaxis histidine kinase CheA
RA	4,929,667	A→G	6.4%	L169L (TTG→CTG)	cheA ←	chemotaxis histidine kinase CheA
RA	4,929,668	C→T	6.5%	Q168Q (CAG→CAA)	cheA ←	chemotaxis histidine kinase CheA
RA	4,930,408	G→C	5.3%	L189V (CTG→GTG)	cheZ ←	protein phosphatase CheZ
RA	4,930,409	T→A	5.3%	T188T (ACA→ACT) ‡	cheZ ←	protein phosphatase CheZ
RA	4,930,410	G→C	5.4%	T188R (ACA→AGA) ‡	cheZ ←	protein phosphatase CheZ
RA	4,938,823	C→G	7.4%	intergenic (‑71/‑1726)	ddlA ← / → PP_4348	D‑alanine‑‑D‑alanine ligase A/cystathionine beta‑lyase
RA	4,944,028	G→A	7.5%	T101T (ACG→ACA)	PP_5673 →	D‑alanine‑‑D‑alanine ligase
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,981,916	T→C	6.3%	A12A (GCA→GCG)	flgE ←	flagellar hook protein FlgE
RA	4,990,623	C→G	14.2%	S170T (AGC→ACC)	PP_4399 ←	glutamine synthetase
RA	4,990,626	A→T	15.4%	V169D (GTC→GAC)	PP_4399 ←	glutamine synthetase
RA	4,990,629	C→G	15.4%	G168A (GGT→GCT)	PP_4399 ←	glutamine synthetase
RA	4,990,633	T→G	13.7%	M167L (ATG→CTG)	PP_4399 ←	glutamine synthetase
RA	5,015,782	A→G	5.5%	intergenic (‑45/+189)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,787	T→A	5.7%	intergenic (‑50/+184)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,788	C→G	5.6%	intergenic (‑51/+183)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,789	T→A	5.6%	intergenic (‑52/+182)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,041,195	C→G	9.3%	intergenic (+173/‑489)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,198	C→T	9.1%	intergenic (+176/‑486)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,200	T→A	9.0%	intergenic (+178/‑484)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,202	A→G	9.9%	intergenic (+180/‑482)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,205	C→G	9.1%	intergenic (+183/‑479)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,059,500	Δ1 bp	5.3%	coding (1334/1581 nt)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,059,505	A→T	7.5%	N443K (AAT→AAA)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,059,508:1	+G	5.2%	coding (1326/1581 nt)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,059,867	A→C	9.1%	S323A (TCC→GCC)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,059,869	C→G	9.1%	C322S (TGC→TCC)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,059,872	C→G	8.8%	G321A (GGA→GCA)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,059,874	G→T	9.5%	G320G (GGC→GGA)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,074,529	C→A	5.4%	R12L (CGC→CTC)	PP_5692 ←	hypothetical protein
RA	5,077,234	G→T	5.6%	intergenic (+29/+79)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,077,237	A→C	5.6%	intergenic (+32/+76)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,079,126	T→A	6.7%	intergenic (‑371/+26)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,079,129	T→A	6.2%	intergenic (‑374/+23)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,083,011	C→A	6.7%	D419Y (GAC→TAC)	alaS ←	alanine‑‑tRNA ligase
RA	5,093,724	T→C	6.2%	K254R (AAG→AGG)	hisP ←	histidine lysine/arginine/ornithine ABC transporter ATP binding protein
RA	5,140,396	A→C	6.5%	intergenic (+108/+272)	PP_4524 → / ← PP_4525	sodium‑solute symporter/LysR family transcriptional regulator
RA	5,166,530	C→T	6.3%	L450L (CTG→CTA) ‡	hrpA ←	ATP‑dependent helicase HrpA
RA	5,166,531	A→G	5.9%	L450P (CTG→CCG) ‡	hrpA ←	ATP‑dependent helicase HrpA
RA	5,173,248	G→C	8.5%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,182,839	A→C	5.2%	D110A (GAC→GCC)	PP_4562 →	hypothetical protein
RA	5,185,122	C→T	5.2%	L446L (CTG→CTA)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,194,887	T→G	11.5%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,194,888	C→A	9.9%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,195,985	G→A	5.4%	S177L (TCG→TTG) ‡	ybgJ ←	allophanate hydrolase subunit 1
RA	5,195,986	A→G	5.5%	S177P (TCG→CCG) ‡	ybgJ ←	allophanate hydrolase subunit 1
RA	5,195,989	C→T	5.7%	V176I (GTA→ATA)	ybgJ ←	allophanate hydrolase subunit 1
RA	5,195,990	T→C	5.7%	A175A (GCA→GCG)	ybgJ ←	allophanate hydrolase subunit 1
RA	5,199,645	G→C	12.9%	intergenic (+20/+53)	PP_4579 → / ← PP_4580	LysR family transcriptional regulator/hypothetical protein
RA	5,201,109	C→G	5.6%	A136P (GCG→CCG)	PP_4582 ←	membrane protein
RA	5,212,487	A→G	11.0%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,488	C→A	10.3%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,491	T→G	10.6%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,492	C→T	10.6%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,216,083	A→G	5.3%	L208P (CTG→CCG)	PP_4596 ←	putative oxidoreductase
RA	5,216,203	A→G	6.5%	F168S (TTC→TCC)	PP_4596 ←	putative oxidoreductase
RA	5,250,567	G→A	5.5%	P40S (CCG→TCG)	cidB ←	holin CidA anti‑holin regulator
RA	5,256,075	A→G	7.2%	K202R (AAG→AGG)	folM →	bifunctional dihydrofolate reductase/dihydromonapterin reductase
RA	5,286,952	C→A	7.1%	L118L (CTG→CTT)	ggt ←	gamma‑glutamyltranspeptidase
RA	5,293,263	C→T	8.0%	G375D (GGC→GAC)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,297,191	A→C	7.5%	S58A (TCG→GCG)	TpbB ←	diguanylate cyclase
RA	5,297,192	G→C	6.6%	R57R (CGC→CGG)	TpbB ←	diguanylate cyclase
RA	5,297,195	G→C	6.7%	A56A (GCC→GCG) ‡	TpbB ←	diguanylate cyclase
RA	5,297,196	G→T	6.6%	A56D (GCC→GAC) ‡	TpbB ←	diguanylate cyclase
RA	5,298,632	A→C	5.7%	R490R (CGT→CGG)	recD ←	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
RA	5,319,933	A→C	5.2%	M62R (ATG→AGG)	PP_4681 ←	hypothetical protein
RA	5,319,943	G→T	5.1%	L59M (CTG→ATG)	PP_4681 ←	hypothetical protein
RA	5,323,619	A→T	6.4%	T85S (ACC→TCC) ‡	PP_4684 →	kinase‑like domain‑containing protein
RA	5,323,620	C→G	6.5%	T85S (ACC→AGC) ‡	PP_4684 →	kinase‑like domain‑containing protein
RA	5,323,625	Δ1 bp	6.6%	coding (259/1563 nt)	PP_4684 →	kinase‑like domain‑containing protein
RA	5,323,635:1	+T	8.2%	coding (269/1563 nt)	PP_4684 →	kinase‑like domain‑containing protein
RA	5,323,640	C→G	8.3%	Q92E (CAG→GAG) ‡	PP_4684 →	kinase‑like domain‑containing protein
RA	5,323,641	A→T	8.2%	Q92L (CAG→CTG) ‡	PP_4684 →	kinase‑like domain‑containing protein
RA	5,325,511	T→A	10.8%	noncoding (133/149 nt)	PP_mr52 →	PrrF ncRNA
RA	5,344,467	C→G	9.5%	intergenic (+42/‑136)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,471	C→T	9.6%	intergenic (+46/‑132)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,351,342	A→C	7.3%	intergenic (+21/+55)	PP_4706 → / ← PP_4707	hypothetical protein/OsmY‑like protein
RA	5,351,345	G→T	7.9%	intergenic (+24/+52)	PP_4706 → / ← PP_4707	hypothetical protein/OsmY‑like protein
RA	5,361,071	A→T	5.8%	intergenic (‑78/+23)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,361,072	A→T	5.8%	intergenic (‑79/+22)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,363,540	C→T	5.7%	G76R (GGG→AGG)	glmM ←	phosphoglucosamine mutase
RA	5,363,587	G→C	6.1%	A60G (GCA→GGA)	glmM ←	phosphoglucosamine mutase
RA	5,363,590	G→C	6.2%	S59C (TCC→TGC)	glmM ←	phosphoglucosamine mutase
RA	5,367,609	A→T	6.1%	H44L (CAT→CTT)	PP_4720 →	RNA‑binding protein
RA	5,367,621	A→T	5.8%	K48M (AAG→ATG)	PP_4720 →	RNA‑binding protein
RA	5,390,656	G→C	5.9%	noncoding (24/87 nt)	PP_mr56 →	C4 ncRNA
RA	5,390,663	T→A	8.7%	noncoding (31/87 nt)	PP_mr56 →	C4 ncRNA
RA	5,395,344	A→G	5.7%	E762E (GAA→GAG)	hsdR →	type I restriction modification system endonuclease
RA	5,407,046	T→G	5.5%	N124T (AAC→ACC)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,407,050	G→T	7.2%	R123S (CGC→AGC)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,407,052	A→C	6.0%	L122R (CTG→CGG)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,407,056	C→A	5.9%	V121L (GTG→TTG)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,420,452	G→C	6.1%	A216G (GCC→GGC)	PP_4760 ←	alcohol dehydrogenase
RA	5,437,506	A→G	5.5%	I18T (ATC→ACC)	PP_4775 ←	hypothetical protein
RA	5,441,068	Δ1 bp	5.7%	coding (1516/1653 nt)	PP_4780 ←	acyl‑CoA dehydrogenase
RA	5,441,069	Δ1 bp	6.2%	coding (1515/1653 nt)	PP_4780 ←	acyl‑CoA dehydrogenase
RA	5,441,071	Δ1 bp	6.3%	coding (1513/1653 nt)	PP_4780 ←	acyl‑CoA dehydrogenase
RA	5,458,892:1	+A	10.0%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,458,898	Δ1 bp	9.9%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,463,400	T→A	8.5%	intergenic (‑51/+48)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,463,401	T→A	8.5%	intergenic (‑52/+47)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,463,407	Δ1 bp	6.5%	intergenic (‑58/+41)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,469,180	A→T	8.5%	L273H (CTC→CAC)	mrdB ←	murein transpeptidase factor
RA	5,469,183	A→T	8.5%	V272E (GTG→GAG)	mrdB ←	murein transpeptidase factor
RA	5,485,109	A→T	8.2%	intergenic (+15/‑132)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,489,475	C→T	8.9%	intergenic (+32/‑44)	PP_4824 → / → PP_4825	two‑component system sensor histidine kinase/response regulator/MarC family membrane protein
RA	5,489,477	C→T	9.0%	intergenic (+34/‑42)	PP_4824 → / → PP_4825	two‑component system sensor histidine kinase/response regulator/MarC family membrane protein
RA	5,489,479	A→T	8.3%	intergenic (+36/‑40)	PP_4824 → / → PP_4825	two‑component system sensor histidine kinase/response regulator/MarC family membrane protein
RA	5,489,481	A→G	8.3%	intergenic (+38/‑38)	PP_4824 → / → PP_4825	two‑component system sensor histidine kinase/response regulator/MarC family membrane protein
RA	5,489,483	A→G	8.6%	intergenic (+40/‑36)	PP_4824 → / → PP_4825	two‑component system sensor histidine kinase/response regulator/MarC family membrane protein
RA	5,508,226	C→G	6.4%	intergenic (+80/‑170)	cycA → / → urtA	D‑alanine/beta‑alanine/D‑serine/glycine permease/urea ABC transporter substrate‑binding protein
RA	5,509,445	A→T	7.4%	A350A (GCA→GCT)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,509,449	G→C	7.3%	A352P (GCC→CCC)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,509,454	G→C	6.7%	G353G (GGG→GGC)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,509,458	A→T	6.1%	S355C (AGC→TGC)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,518,734	T→A	8.6%	K59N (AAA→AAT) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,735	T→A	7.2%	K59I (AAA→ATA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,736	T→A	7.2%	K59* (AAA→TAA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,525,770	C→A	9.6%	intergenic (+60/‑63)	PP_4858 → / → PP_4859	hypothetical protein/TetR family transcriptional regulator
RA	5,525,773	T→G	7.5%	intergenic (+63/‑60)	PP_4858 → / → PP_4859	hypothetical protein/TetR family transcriptional regulator
RA	5,537,058	A→G	8.9%	intergenic (+35/+68)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,061	A→T	9.8%	intergenic (+38/+65)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,062	G→C	11.2%	intergenic (+39/+64)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,067	A→G	10.2%	intergenic (+44/+59)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,068	A→G	10.3%	intergenic (+45/+58)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,069	C→T	10.0%	intergenic (+46/+57)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,070	C→T	10.0%	intergenic (+47/+56)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,075	G→C	14.6%	intergenic (+52/+51)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,076	A→T	10.7%	intergenic (+53/+50)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,079	C→T	10.7%	intergenic (+56/+47)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,538,532	T→G	5.4%	intergenic (+22/+99)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,549,605	T→A	9.5%	intergenic (+18/‑154)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,552,355	C→A	5.9%	intergenic (+18/+643)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,552,356	A→T	5.7%	intergenic (+19/+642)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,552,357	T→G	5.8%	intergenic (+20/+641)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,552,359	T→C	5.9%	intergenic (+22/+639)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,566,957	C→G	7.7%	E177Q (GAA→CAA)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,959	T→A	7.2%	Q176L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,961	C→G	8.4%	L175F (TTG→TTC)	mutL ←	DNA mismatch repair protein MutL
RA	5,590,068:1	+T	6.8%	coding (656/801 nt)	pde ←	3',5'‑cyclic‑nucleotide phosphodiesterase
RA	5,590,072	A→C	6.7%	F218V (TTC→GTC)	pde ←	3',5'‑cyclic‑nucleotide phosphodiesterase
RA	5,590,076	A→C	6.8%	I216M (ATT→ATG)	pde ←	3',5'‑cyclic‑nucleotide phosphodiesterase
RA	5,590,079	G→T	6.7%	C215* (TGC→TGA)	pde ←	3',5'‑cyclic‑nucleotide phosphodiesterase
RA	5,590,083	G→T	6.9%	T214N (ACC→AAC)	pde ←	3',5'‑cyclic‑nucleotide phosphodiesterase
RA	5,594,148	A→G	8.2%	intergenic (‑95/+50)	PP_4921 ← / ← thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
RA	5,594,150	T→C	8.1%	intergenic (‑97/+48)	PP_4921 ← / ← thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
RA	5,594,153	T→C	8.3%	intergenic (‑100/+45)	PP_4921 ← / ← thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
RA	5,594,156	C→T	5.5%	intergenic (‑103/+42)	PP_4921 ← / ← thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
RA	5,608,300	G→C	6.2%	intergenic (‑162/+26)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,994	G→C	6.7%	R202G (CGC→GGC)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,997	C→G	6.6%	E201Q (GAG→CAG)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,614,048	A→G	8.0%	intergenic (+30/+52)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,622,932	A→C	7.3%	M269R (ATG→AGG) ‡	PP_4941 ←	hypothetical protein
RA	5,622,933	T→A	7.3%	M269L (ATG→TTG) ‡	PP_4941 ←	hypothetical protein
RA	5,634,457	T→G	10.6%	intergenic (+33/+350)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,634,458	C→A	10.5%	intergenic (+34/+349)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,643,236	A→G	5.9%	intergenic (+21/‑102)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,261	G→A	6.9%	intergenic (+46/‑77)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,262	C→T	6.8%	intergenic (+47/‑76)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,263	A→G	6.7%	intergenic (+48/‑75)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,267	A→C	6.6%	intergenic (+52/‑71)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,270	G→T	6.7%	intergenic (+55/‑68)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,274	C→T	6.7%	intergenic (+59/‑64)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,275	A→G	6.7%	intergenic (+60/‑63)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,276	T→C	6.7%	intergenic (+61/‑62)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,651,904	G→T	5.2%	A189D (GCC→GAC)	fba ←	fructose‑bisphosphate aldolase
RA	5,652,960	T→G	5.4%	intergenic (‑61/+100)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,652,968	A→T	7.0%	intergenic (‑69/+92)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,652,972	T→C	6.4%	intergenic (‑73/+88)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,893	C→A	6.4%	intergenic (‑199/‑53)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,657,894	T→G	6.6%	intergenic (‑200/‑52)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
JC	5,681,415	+CGGG	94.7%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,707,113	G→C	5.4%	L377L (CTG→CTC)	PP_5009 →	hypothetical protein
RA	5,721,548	A→C	12.0%	F239C (TTC→TGC)	glnQ ←	glutamine transport ATP‑binding protein GlnQ
RA	5,721,551	G→T	10.6%	A238E (GCA→GAA)	glnQ ←	glutamine transport ATP‑binding protein GlnQ
RA	5,725,646	T→G	7.0%	K440N (AAA→AAC)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,725,652	C→G	8.1%	P438P (CCG→CCC)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,725,658	C→A	7.9%	P436P (CCG→CCT)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,740,457	G→A	13.5%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,467	T→G	32.1%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,470	A→T	22.6%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,471	A→T	22.6%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,474	C→A	21.5%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,484	T→C	11.3%	intergenic (+49/+22)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,741,508	A→T	10.9%	intergenic (‑179/+49)	PP_5038 ← / ← PP_5039	lipoprotein/hypothetical protein
RA	5,743,349	A→G	8.1%	intergenic (‑182/+65)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,350	C→T	8.1%	intergenic (‑183/+64)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,351	A→C	8.1%	intergenic (‑184/+63)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,352	G→T	9.2%	intergenic (‑185/+62)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,360	C→T	7.6%	intergenic (‑193/+54)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,362	T→C	7.4%	intergenic (‑195/+52)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,363	G→A	7.9%	intergenic (‑196/+51)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,365	A→G	7.7%	intergenic (‑198/+49)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,373	A→C	7.7%	intergenic (‑206/+41)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,374	G→T	6.7%	intergenic (‑207/+40)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,375	A→G	6.8%	intergenic (‑208/+39)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,376	C→T	6.7%	intergenic (‑209/+38)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,747,447	A→T	6.0%	L176Q (CTG→CAG)	PP_5043 ←	PhoPQ‑activated pathogenicity‑like protein
RA	5,747,450	T→G	7.1%	E175A (GAG→GCG)	PP_5043 ←	PhoPQ‑activated pathogenicity‑like protein
RA	5,747,455	C→A	6.1%	A173A (GCG→GCT)	PP_5043 ←	PhoPQ‑activated pathogenicity‑like protein
RA	5,747,458	A→T	6.0%	A172A (GCT→GCA)	PP_5043 ←	PhoPQ‑activated pathogenicity‑like protein
RA	5,749,039	T→A	5.3%	N314I (AAC→ATC)	typA ←	ribosome associated GTPase
RA	5,749,046	G→T	5.3%	Q312K (CAG→AAG)	typA ←	ribosome associated GTPase
RA	5,749,047	G→C	5.3%	F311L (TTC→TTG) ‡	typA ←	ribosome associated GTPase
RA	5,749,048	A→C	5.3%	F311C (TTC→TGC) ‡	typA ←	ribosome associated GTPase
RA	5,762,503	T→A	5.2%	intergenic (+19/‑122)	gpmI → / → PP_5057	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase/M23/M37 family peptidase
RA	5,784,878	T→G	8.4%	intergenic (+44/‑119)	kefA → / → PP_5068	intermediate mechanosensitive channel protein/hypothetical protein
RA	5,784,879	T→A	8.4%	intergenic (+45/‑118)	kefA → / → PP_5068	intermediate mechanosensitive channel protein/hypothetical protein
RA	5,784,880	C→A	8.4%	intergenic (+46/‑117)	kefA → / → PP_5068	intermediate mechanosensitive channel protein/hypothetical protein
RA	5,790,143	A→T	7.5%	intergenic (+22/+46)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,150	A→G	7.1%	intergenic (+29/+39)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,151	C→G	7.1%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,152	C→T	7.2%	intergenic (+31/+37)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,159	A→T	7.7%	intergenic (+38/+30)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,791,129	T→C	5.7%	I197V (ATC→GTC)	hemE ←	uroporphyrinogen decarboxylase
RA	5,807,984	A→G	6.4%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,985	T→C	6.3%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,986	G→A	6.3%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,987	C→T	7.6%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,816,531	C→G	5.4%	A114G (GCC→GGC)	PP_5092 →	NLP/P60 protein
RA	5,825,231	T→C	7.0%	E81G (GAA→GGA)	trmB ←	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,825,234	A→T	6.9%	L80Q (CTG→CAG)	trmB ←	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,825,237	A→T	7.9%	L79Q (CTG→CAG)	trmB ←	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,825,240	G→A	6.5%	S78F (TCC→TTC)	trmB ←	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,827,954	C→G	5.2%	intergenic (+156/+43)	mtgA → / ← rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
RA	5,827,955	A→G	5.2%	intergenic (+157/+42)	mtgA → / ← rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
RA	5,827,967	C→G	5.5%	intergenic (+169/+30)	mtgA → / ← rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
RA	5,845,958	A→G	9.6%	intergenic (+30/+61)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,845,963	G→A	8.5%	intergenic (+35/+56)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,845,972	T→C	8.1%	intergenic (+44/+47)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,845,977	C→T	8.2%	intergenic (+49/+42)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,855,103	C→A	5.9%	L375M (CTG→ATG) ‡	tcyP →	sodium/cystine symporter
RA	5,855,104	T→G	5.9%	L375R (CTG→CGG) ‡	tcyP →	sodium/cystine symporter
RA	5,855,821	C→A	6.8%	V67F (GTC→TTC)	folA ←	dihydrofolate reductase
RA	5,855,824	C→T	6.4%	V66M (GTG→ATG)	folA ←	dihydrofolate reductase
RA	5,855,825	G→C	7.3%	I65M (ATC→ATG) ‡	folA ←	dihydrofolate reductase
RA	5,855,826	A→G	6.5%	I65T (ATC→ACC) ‡	folA ←	dihydrofolate reductase
RA	5,855,829	T→G	6.7%	N64T (AAC→ACC)	folA ←	dihydrofolate reductase
RA	5,857,960	T→A	5.1%	L170H (CTT→CAT) ‡	PP_5134 →	hypothetical protein
RA	5,857,961	T→A	5.1%	L170L (CTT→CTA) ‡	PP_5134 →	hypothetical protein
RA	5,857,965	C→G	5.1%	R172G (CGG→GGG)	PP_5134 →	hypothetical protein
RA	5,865,452	A→T	5.4%	R233R (CGT→CGA)	cadA‑III ←	cadmium translocating P‑type ATPase
RA	5,865,455	G→C	5.5%	D232E (GAC→GAG) ‡	cadA‑III ←	cadmium translocating P‑type ATPase
RA	5,865,457	C→G	5.6%	D232H (GAC→CAC) ‡	cadA‑III ←	cadmium translocating P‑type ATPase
RA	5,865,458	C→G	5.6%	L231L (CTG→CTC) ‡	cadA‑III ←	cadmium translocating P‑type ATPase
RA	5,865,460	G→C	5.9%	L231V (CTG→GTG) ‡	cadA‑III ←	cadmium translocating P‑type ATPase
RA	5,866,696	G→T	6.9%	intergenic (+19/+38)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,872,021	T→A	6.0%	D211V (GAC→GTC)	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,875,844	G→A	6.9%	G109G (GGC→GGT)	ilvA‑II ←	threonine deaminase
RA	5,878,241	C→T	8.7%	L252L (CTG→CTA)	PP_5152 ←	hypothetical protein
RA	5,890,791	A→C	11.3%	intergenic (+79/+41)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,890,792	A→T	11.2%	intergenic (+80/+40)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,890,793	G→T	12.0%	intergenic (+81/+39)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,894,573	A→G	5.5%	V258A (GTG→GCG)	cysW ←	sulfate ABC transporter permease CysW
RA	5,897,778	C→G	7.7%	intergenic (‑178/+56)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,903,164	G→T	10.2%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,165	A→C	14.9%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,907,906:1	+G	5.5%	coding (61/1095 nt)	spuE ←	spermidine/putrescine ABC transporter substrate‑binding protein
RA	5,907,912	Δ1 bp	5.5%	coding (55/1095 nt)	spuE ←	spermidine/putrescine ABC transporter substrate‑binding protein
RA	5,930,938	C→T	5.7%	A378T (GCA→ACA)	ubiH ←	2‑octaprenyl‑6‑methoxyphenyl hydroxylase
RA	5,931,171	T→C	18.7%	Q300R (CAG→CGG)	ubiH ←	2‑octaprenyl‑6‑methoxyphenyl hydroxylase
RA	5,948,139	G→A	9.1%	A112V (GCC→GTC)	rho ←	transcription termination factor Rho
RA	5,948,189	G→C	16.2%	D95E (GAC→GAG)	rho ←	transcription termination factor Rho
RA	5,959,826	T→C	6.4%	D36G (GAC→GGC)	rnk ←	nucleotide diphosphokinase regulator
RA	5,959,835	G→A	6.4%	A33V (GCC→GTC)	rnk ←	nucleotide diphosphokinase regulator
RA	5,970,527	C→T	6.2%	R256H (CGC→CAC)	PP_5236 ←	hypothetical protein
RA	5,984,832	G→A	7.0%	D96D (GAC→GAT)	ycaC‑II ←	putative hydrolase
RA	5,984,835	T→C	7.1%	E95E (GAA→GAG)	ycaC‑II ←	putative hydrolase
RA	5,984,862	G→A	22.5%	P86P (CCC→CCT)	ycaC‑II ←	putative hydrolase
RA	5,984,865	A→G	22.3%	R85R (CGT→CGC)	ycaC‑II ←	putative hydrolase
RA	5,987,903	G→A	5.3%	A329T (GCC→ACC)	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,987,906	C→A	5.0%	L330M (CTG→ATG)	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,987,910	G→C	5.0%	R331P (CGC→CCC)	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,987,912	C→A	6.1%	L332M (CTG→ATG) ‡	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,987,913	T→G	5.0%	L332R (CTG→CGG) ‡	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,987,915	G→C	5.7%	G333R (GGC→CGC)	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,987,922	T→C	5.2%	V335A (GTG→GCG)	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,988,809	G→A	7.3%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	7.4%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	6.3%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	6.3%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	6.3%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	6.0%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	6.7%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	7.0%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	7.0%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	6.9%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	6.9%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	6.0%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	11.2%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	13.6%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	13.6%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	16.6%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	16.5%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,441	G→T	20.2%	L76M (CTG→ATG)	ycaC‑III ←	putative hydrolase
RA	5,990,442	G→C	20.0%	A75A (GCC→GCG) ‡	ycaC‑III ←	putative hydrolase
RA	5,990,443	G→T	20.5%	A75D (GCC→GAC) ‡	ycaC‑III ←	putative hydrolase
RA	5,990,451	T→C	18.3%	E72E (GAA→GAG)	ycaC‑III ←	putative hydrolase
RA	5,990,454	C→G	17.1%	P71P (CCG→CCC)	ycaC‑III ←	putative hydrolase
RA	5,990,469	G→A	15.6%	N66N (AAC→AAT)	ycaC‑III ←	putative hydrolase
RA	5,990,472	G→C	13.3%	P65P (CCC→CCG)	ycaC‑III ←	putative hydrolase
RA	5,997,189:1	+G	9.5%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	5,997,194	Δ1 bp	9.9%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,002,505	T→C	6.8%	T478A (ACC→GCC)	amaB ←	L‑piperidine‑6‑carboxylate dehydrogenase
RA	6,004,994	G→C	11.1%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,997	A→T	11.5%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,000	G→C	10.8%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,007	C→A	10.3%	intergenic (+45/‑131)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,013,836	G→A	18.5%	intergenic (+41/+69)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,838	A→G	18.6%	intergenic (+43/+67)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,846	T→G	20.2%	intergenic (+51/+59)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,854	G→C	13.9%	intergenic (+59/+51)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,016,877	A→G	9.6%	intergenic (‑193/+34)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,879	C→T	7.6%	intergenic (‑195/+32)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,880	A→G	7.4%	intergenic (‑196/+31)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,882	C→T	7.3%	intergenic (‑198/+29)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,027,222	A→T	7.4%	F212Y (TTC→TAC) ‡	PP_5277 ←	MFS transporter
RA	6,027,223	A→T	7.4%	F212I (TTC→ATC) ‡	PP_5277 ←	MFS transporter
RA	6,033,457	A→T	5.1%	V32V (GTT→GTA)	PP_5284 ←	hypothetical protein
RA	6,041,127	T→A	7.4%	Q17H (CAA→CAT)	PP_5293 ←	hypothetical protein
RA	6,041,133	G→A	6.3%	I15I (ATC→ATT) ‡	PP_5293 ←	hypothetical protein
RA	6,041,135	T→A	6.3%	I15F (ATC→TTC) ‡	PP_5293 ←	hypothetical protein
RA	6,041,137	T→C	6.3%	E14G (GAA→GGA)	PP_5293 ←	hypothetical protein
RA	6,041,143	T→A	6.4%	N12I (AAT→ATT)	PP_5293 ←	hypothetical protein
RA	6,052,396	A→C	5.3%	E230A (GAG→GCG)	PP_5304 →	lipoprotein
RA	6,056,171	A→G	10.1%	T100A (ACC→GCC)	oxyR →	oxidative and nitrosative stress transcriptional dual regulator
RA	6,061,260	C→A	5.3%	L36L (CTG→CTT)	hupA ←	DNA‑binding protein HU‑alpha
RA	6,070,777	A→T	6.3%	intergenic (‑133/+30)	PP_5324 ← / ← phoU	two‑component system response regulator/phosphate transport‑associated protein
RA	6,070,778	A→T	6.3%	intergenic (‑134/+29)	PP_5324 ← / ← phoU	two‑component system response regulator/phosphate transport‑associated protein
RA	6,079,341	Δ1 bp	5.1%	intergenic (‑116/‑246)	PP_5330 ← / → PP_5331	MFS transporter/acyl‑CoA thioesterase
RA	6,080,988	T→A	9.1%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,080,989	T→A	8.7%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,083,094	T→C	5.9%	T148A (ACG→GCG)	purE ←	5‑(carboxyamino)imidazole ribonucleotide mutase
RA	6,104,053	T→A	8.2%	intergenic (+31/‑83)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,104,054	T→A	8.2%	intergenic (+32/‑82)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,111,977	T→A	8.2%	H118Q (CAT→CAA)	PP_5362 →	hypothetical protein
RA	6,127,162	C→G	7.4%	V241V (GTG→GTC) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,127,163	A→T	7.3%	V241E (GTG→GAG) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,127,164	C→G	7.4%	V241L (GTG→CTG) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,128,893	G→T	5.3%	G30W (GGG→TGG)	PP_5376 →	hypothetical protein
RA	6,130,858	C→G	5.2%	A222P (GCT→CCT)	copB‑II ←	copper resistance protein B
RA	6,137,497	T→C	5.1%	intergenic (+41/‑49)	PP_5733 → / → czcC	metal‑binding protein/CzcC family metal RND transporter outer membrane protein
RA	6,149,807	T→A	5.7%	intergenic (‑1991/‑1183)	PP_5393 ← / → PP_5395	metal‑binding chaperone/hypothetical protein
RA	6,149,811	A→G	5.7%	intergenic (‑1995/‑1179)	PP_5393 ← / → PP_5395	metal‑binding chaperone/hypothetical protein
RA	6,149,815	A→C	6.0%	intergenic (‑1999/‑1175)	PP_5393 ← / → PP_5395	metal‑binding chaperone/hypothetical protein
RA	6,149,816	G→T	6.0%	intergenic (‑2000/‑1174)	PP_5393 ← / → PP_5395	metal‑binding chaperone/hypothetical protein
RA	6,149,820	C→T	5.9%	intergenic (‑2004/‑1170)	PP_5393 ← / → PP_5395	metal‑binding chaperone/hypothetical protein
RA	6,149,824	T→A	6.2%	intergenic (‑2008/‑1166)	PP_5393 ← / → PP_5395	metal‑binding chaperone/hypothetical protein
RA	6,158,981	C→T	5.8%	intergenic (+318/+550)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,158,983	C→G	5.3%	intergenic (+320/+548)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,158,985	C→G	5.7%	intergenic (+322/+546)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,158,987	A→G	5.6%	intergenic (+324/+544)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,174,708	G→T	7.6%	intergenic (‑70/+49)	glmU ← / ← atpC	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon
RA	6,174,709	A→C	6.2%	intergenic (‑71/+48)	glmU ← / ← atpC	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171364–176292	176292	1–4929	25 [24]	[24] 28	PP_16SA–[PP_5SA]	PP_16SA,PP_23SA,[PP_5SA]
*	*	÷	NC_002947	176643–181727	181727	1–5085	25 [23]	[23] 25	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]
*	*	÷	NC_002947	2478319	2478552	234	27 [24]	[24] 25	PP_2172	hypothetical protein
*	*	÷	NC_002947	2837063	2837210	148	25 [24]	[24] 26	sad‑I/PP_2489	NAD+‑dependent succinate semialdehyde dehydrogenase/xenobiotic reductase

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	35503 =	72 (1.130)	4 (0.070)	4/254	NT	5.6%	coding (125/588 nt)	PP_0031	hypothetical protein
	?	NC_002947	35545 =	66 (1.090)					coding (83/588 nt)	PP_0031	hypothetical protein
*	?	NC_002947	= 80992	63 (0.990)	4 (0.070)	4/246	NT	6.1%	intergenic (+49/‑85)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
	?	NC_002947	= 81051	65 (1.110)					intergenic (+108/‑26)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
*	?	NC_002947	= 100459	60 (0.940)	4 (0.070)	4/232	NT	6.1%	intergenic (‑51/+71)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	= 100507	71 (1.280)					intergenic (‑99/+23)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
*	?	NC_002947	124868 =	91 (1.430)	5 (0.080)	5/252	NT	6.2%	coding (248/486 nt)	PP_0119	zinc uptake regulation protein Zur
	?	NC_002947	124926 =	65 (1.080)					coding (190/486 nt)	PP_0119	zinc uptake regulation protein Zur
*	?	NC_002947	127347 =	51 (0.800)	3 (0.050)	3/254	NT	6.1%	coding (101/288 nt)	PP_0122	hypothetical protein
	?	NC_002947	127394 =	44 (0.730)					coding (54/288 nt)	PP_0122	hypothetical protein
*	?	NC_002947	132201 =	82 (1.290)	4 (0.070)	4/252	NT	5.3%	coding (393/618 nt)	cc	cytochrome c4
	?	NC_002947	132256 =	66 (1.100)					coding (448/618 nt)	cc	cytochrome c4
*	?	NC_002947	= 156459	60 (0.940)	4 (0.070)	4/252	NT	6.2%	coding (1267/1308 nt)	citN	citrate transporter
	?	NC_002947	= 156485	64 (1.060)					coding (1241/1308 nt)	citN	citrate transporter
*	?	NC_002947	171965 =	NA (NA)	3 (0.050)	3/252	NT	NA	noncoding (577/1522 nt)	PP_16SA	16S ribosomal RNA
	?	NC_002947	172008 =	NA (NA)					noncoding (620/1522 nt)	PP_16SA	16S ribosomal RNA
*	?	NC_002947	= 172114	NA (NA)	3 (0.050)	3/256	NT	NA	noncoding (726/1522 nt)	PP_16SA	16S ribosomal RNA
	?	NC_002947	172121 =	NA (NA)					noncoding (733/1522 nt)	PP_16SA	16S ribosomal RNA
*	?	NC_002947	= 174906	NA (NA)	4 (0.070)	4/256	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	235331 =	61 (0.960)	5 (0.090)	5/234	NT	8.9%	intergenic (+28/+97)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235390 =	49 (0.880)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
*	?	NC_002947	= 240218	77 (1.210)	6 (0.100)	5/252	NT	7.1%	coding (513/1128 nt)	PP_0188	uroporphyrin‑III C‑methyltransferase
	?	NC_002947	= 240254	83 (1.380)					coding (549/1128 nt)	PP_0188	uroporphyrin‑III C‑methyltransferase
*	?	NC_002947	= 261581	56 (0.880)	4 (0.070)	4/254	NT	6.1%	coding (63/966 nt)	PP_0210	phycobiliprotein
	?	NC_002947	= 261613	69 (1.140)					coding (95/966 nt)	PP_0210	phycobiliprotein
*	?	NC_002947	= 312729	55 (0.870)	7 (0.120)	6/238	NT	11.7%	coding (483/831 nt)	fdhD	protein sulfur transferase
	?	NC_002947	= 312757	56 (0.990)					coding (455/831 nt)	fdhD	protein sulfur transferase
*	?	NC_002947	= 319056	54 (0.850)	3 (0.050)	3/250	NT	5.4%	coding (686/1815 nt)	PP_0264	sensor histidine kinase
	?	NC_002947	= 319086	54 (0.900)					coding (656/1815 nt)	PP_0264	sensor histidine kinase
*	?	NC_002947	= 352291	55 (0.870)	4 (0.070)	4/254	NT	6.6%	coding (29/771 nt)	hisF	imidazole glycerol phosphate synthase subunit HisF
	?	NC_002947	= 352318	60 (0.990)					coding (56/771 nt)	hisF	imidazole glycerol phosphate synthase subunit HisF
*	?	NC_002947	353068 =	37 (0.580)	11 (0.200)	9/228	NT	29.4%	intergenic (+35/+83)	hisF/cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
	?	NC_002947	353120 =	21 (0.390)					intergenic (+87/+31)	hisF/cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
*	?	NC_002947	379770 =	63 (0.990)	6 (0.100)	6/254	NT	9.9%	coding (67/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit
	?	NC_002947	379814 =	49 (0.810)					coding (111/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit
*	?	NC_002947	= 400298	68 (1.070)	4 (0.060)	4/258	NT	7.6%	intergenic (+33/‑117)	PP_0333/PP_0334	hypothetical protein/transposase
	?	NC_002947	= 400367	31 (0.500)					intergenic (+102/‑48)	PP_0333/PP_0334	hypothetical protein/transposase
*	?	NC_002947	409939 =	70 (1.100)	6 (0.100)	6/250	NT	9.8%	coding (725/2646 nt)	aceE	pyruvate dehydrogenase E1 component
	?	NC_002947	410027 =	45 (0.750)					coding (637/2646 nt)	aceE	pyruvate dehydrogenase E1 component
*	?	NC_002947	= 495372	69 (1.090)	4 (0.070)	4/254	NT	5.3%	coding (662/999 nt)	PP_0408	hypothetical protein
	?	NC_002947	= 495458	77 (1.270)					coding (576/999 nt)	PP_0408	hypothetical protein
*	?	NC_002947	= 527341	NA (NA)	4 (0.070)	4/250	NT	NA	noncoding (579/2902 nt)	PP_23SC	23S ribosomal RNA
	?	NC_002947	= 527407	NA (NA)					noncoding (645/2902 nt)	PP_23SC	23S ribosomal RNA
*	?	NC_002947	571069 =	78 (1.230)	4 (0.070)	4/248	NT	5.2%	coding (41/546 nt)	ssb	single‑stranded DNA‑binding protein
	?	NC_002947	571136 =	73 (1.230)					coding (108/546 nt)	ssb	single‑stranded DNA‑binding protein
*	?	NC_002947	585897 =	65 (1.020)	4 (0.070)	4/250	NT	5.8%	coding (874/1443 nt)	PP_0496	sodium/alanine symporter
	?	NC_002947	585974 =	69 (1.160)					coding (797/1443 nt)	PP_0496	sodium/alanine symporter
*	?	NC_002947	615051 =	84 (1.320)	5 (0.080)	3/254	NT	5.8%	coding (196/888 nt)	ispA	farnesyl diphosphate synthase
	?	NC_002947	615099 =	83 (1.370)					coding (148/888 nt)	ispA	farnesyl diphosphate synthase
*	?	NC_002947	674337 =	51 (0.800)	3 (0.050)	3/248	NT	6.3%	intergenic (‑229/+77)	PP_0575/PP_0576	membrane protein/lipoprotein
	?	NC_002947	674395 =	42 (0.710)					intergenic (‑287/+19)	PP_0575/PP_0576	membrane protein/lipoprotein
*	?	NC_002947	= 712552	63 (0.990)	6 (0.100)	3/256	NT	9.1%	coding (2350/2832 nt)	ileS	isoleucine‑‑tRNA ligase
	?	NC_002947	= 712591	59 (0.970)					coding (2389/2832 nt)	ileS	isoleucine‑‑tRNA ligase
*	?	NC_002947	= 741869	NA (NA)	4 (0.070)	3/254	NT	NA	intergenic (+469/‑31)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	= 741902	NA (NA)					coding (3/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	780009 =	58 (0.910)	4 (0.070)	3/248	NT	6.8%	coding (462/954 nt)	PP_0670	bile acid/Na+ symporter family transporter
	?	NC_002947	780052 =	56 (0.950)					coding (419/954 nt)	PP_0670	bile acid/Na+ symporter family transporter
*	?	NC_002947	809179 =	65 (1.020)	4 (0.070)	4/254	NT	6.2%	coding (179/1335 nt)	PP_0695	hypothetical protein
	?	NC_002947	809261 =	58 (0.960)					coding (97/1335 nt)	PP_0695	hypothetical protein
*	?	NC_002947	811533 =	50 (0.790)	3 (0.050)	3/252	NT	5.9%	coding (719/918 nt)	PP_0698	LysR family transcriptional regulator
	?	NC_002947	811610 =	49 (0.810)					coding (642/918 nt)	PP_0698	LysR family transcriptional regulator
*	?	NC_002947	= 916334	76 (1.200)	7 (0.110)	6/256	NT	9.0%	coding (1233/1491 nt)	PP_0798	GGDEF domain‑containing protein
	?	NC_002947	= 916420	68 (1.110)					coding (1147/1491 nt)	PP_0798	GGDEF domain‑containing protein
*	?	NC_002947	= 931479	59 (0.930)	4 (0.060)	4/258	NT	5.9%	coding (14143/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 931546	70 (1.140)					coding (14076/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 936724	56 (0.880)	4 (0.070)	4/250	NT	7.0%	coding (8898/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 936770	53 (0.890)					coding (8852/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 945385	53 (0.830)	3 (0.050)	3/248	NT	5.2%	coding (237/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 945422	61 (1.030)					coding (200/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	1028604 =	65 (1.020)	4 (0.070)	4/254	NT	6.2%	coding (136/1626 nt)	dppA‑III	dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1028658 =	59 (0.970)					coding (82/1626 nt)	dppA‑III	dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	1044511 =	53 (0.830)	6 (0.100)	5/250	NT	10.5%	coding (219/702 nt)	PP_0904	protein InaA
	?	NC_002947	1044561 =	53 (0.890)					coding (269/702 nt)	PP_0904	protein InaA
*	?	NC_002947	1050113 =	74 (1.160)	9 (0.150)	8/254	NT	11.8%	coding (740/1098 nt)	PP_0908	hypothetical protein
	?	NC_002947	1050143 =	64 (1.060)					coding (710/1098 nt)	PP_0908	hypothetical protein
*	?	NC_002947	1143023 =	55 (0.870)	3 (0.050)	3/252	NT	5.3%	coding (159/1428 nt)	arcD‑II	arginine/ornithine antiporter
	?	NC_002947	1143060 =	55 (0.910)					coding (196/1428 nt)	arcD‑II	arginine/ornithine antiporter
*	?	NC_002947	1160022 =	61 (0.960)	4 (0.070)	4/252	NT	6.4%	coding (735/909 nt)	gtsB	ABC transporter permease
	?	NC_002947	1160059 =	60 (1.000)					coding (772/909 nt)	gtsB	ABC transporter permease
*	?	NC_002947	= 1200950	60 (0.940)	4 (0.060)	4/258	NT	6.1%	coding (147/432 nt)	xcpU	type II secretion pathway protein XcpU
	?	NC_002947	= 1200974	66 (1.070)					coding (171/432 nt)	xcpU	type II secretion pathway protein XcpU
*	?	NC_002947	= 1208312	74 (1.160)	4 (0.070)	4/254	NT	5.2%	coding (689/3150 nt)	PP_1058	hypothetical protein
	?	NC_002947	= 1208388	76 (1.250)					coding (613/3150 nt)	PP_1058	hypothetical protein
*	?	NC_002947	1256771 =	66 (1.040)	4 (0.070)	4/254	NT	5.9%	intergenic (+18/+93)	mrp/PP_mr14	ATP‑dependent Fe‑S cluster transferase/cspA regulatory region
	?	NC_002947	1256829 =	64 (1.060)					intergenic (+76/+35)	mrp/PP_mr14	ATP‑dependent Fe‑S cluster transferase/cspA regulatory region
*	?	NC_002947	1267198 =	58 (0.910)	8 (0.140)	7/248	NT	13.3%	coding (790/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
	?	NC_002947	1267237 =	50 (0.840)					coding (751/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
*	?	NC_002947	= 1297498	NA (NA)	3 (0.050)	3/258	NT	NA	coding (686/1329 nt)	PP_1133	transposase
	?	NC_002947	= 1297525	NA (NA)					coding (713/1329 nt)	PP_1133	transposase
*	?	NC_002947	1330937 =	NA (NA)	4 (0.070)	3/256	NT	NA	coding (162/1644 nt)	PP_1157	acetolactate synthase
	?	NC_002947	1330981 =	NA (NA)					coding (206/1644 nt)	PP_1157	acetolactate synthase
*	?	NC_002947	= 1330994	NA (NA)	4 (0.060)	4/260	NT	NA	coding (219/1644 nt)	PP_1157	acetolactate synthase
	?	NC_002947	= 1331024	NA (NA)					coding (249/1644 nt)	PP_1157	acetolactate synthase
*	?	NC_002947	= 1419549	24 (0.380)	20 (0.320)	14/260	NT	31.9%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419636	62 (1.000)					intergenic (‑125/+11)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	1426319 =	NA (NA)	3 (0.050)	3/254	NT	NA	coding (217/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	1426367 =	NA (NA)					coding (265/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 1426814	NA (NA)	4 (0.070)	3/256	NT	NA	coding (712/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426845	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 1426981	NA (NA)	4 (0.070)	4/254	NT	NA	coding (879/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1427010	NA (NA)					coding (908/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	1436018 =	88 (1.390)	6 (0.100)	6/250	NT	6.6%	intergenic (‑55/+98)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	1436095 =	86 (1.440)					intergenic (‑132/+21)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
*	?	NC_002947	1443471 =	65 (1.020)	4 (0.060)	4/258	NT	5.8%	coding (715/948 nt)	PP_1262	LysR family transcriptional regulator
	?	NC_002947	1443512 =	66 (1.070)					coding (674/948 nt)	PP_1262	LysR family transcriptional regulator
*	?	NC_002947	1447906 =	49 (0.770)	3 (0.050)	3/252	NT	5.8%	coding (2004/2178 nt)	PP_1264	fusaric acid resistance protein
	?	NC_002947	1447946 =	51 (0.850)					coding (2044/2178 nt)	PP_1264	fusaric acid resistance protein
*	?	NC_002947	1462058 =	60 (0.940)	3 (0.050)	3/252	NT	5.0%	coding (867/1458 nt)	algI	alginate O‑acetylase AlgI
	?	NC_002947	1462116 =	56 (0.930)					coding (809/1458 nt)	algI	alginate O‑acetylase AlgI
*	?	NC_002947	1499507 =	24 (0.380)	12 (0.190) +GCG	9/260	NT	20.7%	intergenic (+84/‑80)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 5594166	70 (1.100)					intergenic (‑113/+32)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 1520999	76 (1.200)	5 (0.080)	5/252	NT	6.8%	coding (256/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	NC_002947	= 1521021	64 (1.060)					coding (278/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
*	?	NC_002947	= 1557369	67 (1.050)	4 (0.070)	3/254	NT	5.6%	coding (804/993 nt)	PP_1368	glycosyltransferase domain‑containing protein
	?	NC_002947	= 1557391	71 (1.170)					coding (782/993 nt)	PP_1368	glycosyltransferase domain‑containing protein
*	?	NC_002947	= 1557883	79 (1.240)	4 (0.070)	4/256	NT	5.2%	coding (290/993 nt)	PP_1368	glycosyltransferase domain‑containing protein
	?	NC_002947	= 1557937	71 (1.160)					coding (236/993 nt)	PP_1368	glycosyltransferase domain‑containing protein
*	?	NC_002947	1574617 =	54 (0.850)	5 (0.080)	5/252	NT	10.2%	coding (398/525 nt)	pcaP	porin
	?	NC_002947	1574656 =	37 (0.610)					coding (359/525 nt)	pcaP	porin
*	?	NC_002947	= 1650927	43 (0.680)	3 (0.050)	3/254	NT	7.1%	coding (133/2043 nt)	PP_1446	TonB‑dependent receptor
	?	NC_002947	= 1650946	37 (0.610)					coding (114/2043 nt)	PP_1446	TonB‑dependent receptor
*	?	NC_002947	1666772 =	52 (0.820)	5 (0.080)	4/258	NT	7.8%	intergenic (‑44/‑227)	PP_1460/ffh	membrane protein/signal recognition particle GTPase subunit
	?	NC_002947	1666853 =	67 (1.090)					intergenic (‑125/‑146)	PP_1460/ffh	membrane protein/signal recognition particle GTPase subunit
*	?	NC_002947	= 1678762	58 (0.910)	3 (0.050)	3/252	NT	5.0%	coding (819/876 nt)	PP_1474	hypothetical protein
	?	NC_002947	= 1678783	59 (0.980)					coding (798/876 nt)	PP_1474	hypothetical protein
*	?	NC_002947	= 1730993	68 (1.070)	4 (0.070)	4/256	NT	6.2%	coding (95/1152 nt)	dapE	succinyl‑diaminopimelate desuccinylase
	?	NC_002947	= 1731041	55 (0.900)					coding (47/1152 nt)	dapE	succinyl‑diaminopimelate desuccinylase
*	?	NC_002947	1731163 =	45 (0.710)	3 (0.060)	3/210	NT	8.2%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1731255 =	32 (0.640)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	1748689 =	69 (1.090)	4 (0.070)	4/254	NT	6.4%	intergenic (‑22/‑310)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
	?	NC_002947	1748732 =	51 (0.840)					intergenic (‑65/‑267)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1756750	61 (0.960)	5 (0.080)	5/252	NT	7.9%	coding (213/384 nt)	PP_1562	terminase small subunit
	?	NC_002947	= 1756768	58 (0.960)					coding (231/384 nt)	PP_1562	terminase small subunit
*	?	NC_002947	= 1770898	68 (1.070)	6 (0.100)	6/248	NT	8.2%	coding (1646/3000 nt)	PP_1579	hypothetical protein
	?	NC_002947	= 1770925	71 (1.200)					coding (1673/3000 nt)	PP_1579	hypothetical protein
*	?	NC_002947	1774932 =	64 (1.010)	5 (0.080)	5/258	NT	8.1%	coding (112/1077 nt)	PP_1582	hypothetical protein
	?	NC_002947	1774986 =	52 (0.840)					coding (166/1077 nt)	PP_1582	hypothetical protein
*	?	NC_002947	= 1811611	44 (0.690)	4 (0.070)	4/256	NT	7.7%	coding (807/897 nt)	PP_1615	LysR family transcriptional regulator
	?	NC_002947	= 1811657	54 (0.880)					coding (761/897 nt)	PP_1615	LysR family transcriptional regulator
*	?	NC_002947	1834755 =	51 (0.800)	4 (0.060)	4/258	NT	6.9%	coding (614/780 nt)	fpr‑I	ferredoxin‑‑NADP(+) reductase
	?	NC_002947	1834812 =	58 (0.940)					coding (671/780 nt)	fpr‑I	ferredoxin‑‑NADP(+) reductase
*	?	NC_002947	= 1870604	84 (1.320)	4 (0.070)	4/256	NT	5.3%	coding (794/924 nt)	cobD	Subunit of adenosylcobinamide‑phosphate synthase beta component
	?	NC_002947	= 1870672	63 (1.030)					coding (862/924 nt)	cobD	Subunit of adenosylcobinamide‑phosphate synthase beta component
*	?	NC_002947	1874006 =	61 (0.960)	3 (0.050)	3/254	NT	5.4%	coding (317/1056 nt)	cobU	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
	?	NC_002947	1874081 =	47 (0.770)					coding (392/1056 nt)	cobU	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
*	?	NC_002947	= 1947800	42 (0.660)	6 (0.120)	6/214	NT	12.8%	intergenic (‑61/+109)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
	?	NC_002947	= 1947867	48 (0.940)					intergenic (‑128/+42)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
*	?	NC_002947	= 1970739	45 (0.710)	7 (0.130)	5/226	NT	15.0%	intergenic (+33/‑233)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	= 1970801	41 (0.760)					intergenic (+95/‑171)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
*	?	NC_002947	= 2071179	38 (0.600)	3 (0.050)	3/230	NT	7.7%	intergenic (+131/+96)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
	?	NC_002947	= 2071216	39 (0.710)					intergenic (+168/+59)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
*	?	NC_002947	2086080 =	NA (NA)	6 (0.100)	6/256	NT	NA	coding (195/1302 nt)	PP_1865	transposase
	?	NC_002947	2086120 =	NA (NA)					coding (235/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2086250	NA (NA)	5 (0.080)	3/250	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086296	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2100206	57 (0.900)	3 (0.050)	3/256	NT	5.3%	coding (113/888 nt)	PP_1876	AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2100229	52 (0.850)					coding (136/888 nt)	PP_1876	AAA family ATP/GTP‑binding protein
*	?	NC_002947	= 2211258	52 (0.820)	4 (0.070)	4/256	NT	6.8%	coding (649/1167 nt)	PP_1954	hypothetical protein
	?	NC_002947	= 2211283	60 (0.980)					coding (674/1167 nt)	PP_1954	hypothetical protein
*	?	NC_002947	2227868 =	61 (0.960)	5 (0.080)	5/250	NT	7.7%	coding (21/987 nt)	holB	DNA polymerase III subunit delta'
	?	NC_002947	2227930 =	62 (1.040)					coding (83/987 nt)	holB	DNA polymerase III subunit delta'
*	?	NC_002947	2301453 =	0 (0.000)	52 (0.840)	43/260	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	48 (0.770)	43/262	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 2410488	57 (0.900)	4 (0.060)	4/260	NT	6.6%	coding (960/2742 nt)	acnA‑I	aconitate hydratase
	?	NC_002947	= 2410555	57 (0.920)					coding (893/2742 nt)	acnA‑I	aconitate hydratase
*	?	NC_002947	= 2414744	46 (0.720)	6 (0.100)	4/250	NT	11.4%	intergenic (+286/‑59)	PP_2114/PP_2115	transposase/hypothetical protein
	?	NC_002947	= 2414821	50 (0.840)					coding (19/198 nt)	PP_2115	hypothetical protein
*	?	NC_002947	2438010 =	64 (1.010)	4 (0.070)	3/254	NT	6.1%	coding (930/2148 nt)	fadB	enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
	?	NC_002947	2438060 =	61 (1.010)					coding (980/2148 nt)	fadB	enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
*	?	NC_002947	= 2475792	72 (1.130)	4 (0.070)	3/256	NT	5.3%	coding (577/1011 nt)	dusA	tRNA dihydrouridine synthase DusA
	?	NC_002947	= 2475822	74 (1.210)					coding (547/1011 nt)	dusA	tRNA dihydrouridine synthase DusA
*	?	NC_002947	2530616 =	NA (NA)	5 (0.090)	4/246	NT	8.1%	intergenic (+35/‑146)	PP_2218/PP_2219	transposase/hypothetical protein
	?	NC_002947	= 4908164	61 (0.960)					intergenic (‑140/‑142)	PP_4317/PP_4318	hypothetical protein/transposase
*	?	NC_002947	= 2562510	40 (0.630)	5 (0.080)	4/248	NT	10.6%	coding (248/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
	?	NC_002947	= 2562545	47 (0.790)					coding (283/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
*	?	NC_002947	2623445 =	62 (0.980)	4 (0.070)	4/250	NT	6.4%	coding (36/585 nt)	PP_2295	antirestriction protein
	?	NC_002947	2623469 =	59 (0.990)					coding (60/585 nt)	PP_2295	antirestriction protein
*	?	NC_002947	2668377 =	48 (0.760)	3 (0.050)	3/256	NT	5.4%	coding (229/1485 nt)	prpD	2‑methylcitrate dehydratase
	?	NC_002947	2668425 =	59 (0.970)					coding (277/1485 nt)	prpD	2‑methylcitrate dehydratase
*	?	NC_002947	2772500 =	50 (0.790)	3 (0.050)	3/258	NT	5.8%	coding (316/906 nt)	PP_2425	AraC family transcriptional regulator
	?	NC_002947	2772541 =	49 (0.800)					coding (275/906 nt)	PP_2425	AraC family transcriptional regulator
*	?	NC_002947	2870849 =	52 (0.820)	4 (0.070)	4/252	NT	8.3%	intergenic (+156/‑374)	PP_2522/PP_2524	transposase/HD domain‑containing protein
	?	NC_002947	2870889 =	39 (0.650)					intergenic (+196/‑334)	PP_2522/PP_2524	transposase/HD domain‑containing protein
*	?	NC_002947	= 2911602	46 (0.720)	3 (0.050)	3/258	NT	6.1%	coding (622/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
	?	NC_002947	= 2911641	47 (0.760)					coding (661/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
*	?	NC_002947	= 2953620	39 (0.610)	5 (0.080)	4/254	NT	11.3%	coding (878/1383 nt)	PP_2586	putative amino acid transporter
	?	NC_002947	= 2953671	41 (0.680)					coding (827/1383 nt)	PP_2586	putative amino acid transporter
*	?	NC_002947	3001704 =	47 (0.740)	3 (0.050)	3/250	NT	6.2%	coding (428/696 nt)	PP_2625	hypothetical protein
	?	NC_002947	3001787 =	46 (0.770)					coding (511/696 nt)	PP_2625	hypothetical protein
*	?	NC_002947	3008739 =	41 (0.650)	3 (0.050)	3/254	NT	6.7%	coding (356/1977 nt)	PP_2628	ABC transporter ATP‑binding protein
	?	NC_002947	3008793 =	44 (0.730)					coding (302/1977 nt)	PP_2628	ABC transporter ATP‑binding protein
*	?	NC_002947	3044538 =	55 (0.870)	5 (0.080)	5/256	NT	7.9%	coding (80/969 nt)	pstC	phosphate ABC transporter permease
	?	NC_002947	3044574 =	64 (1.050)					coding (116/969 nt)	pstC	phosphate ABC transporter permease
*	?	NC_002947	3053790 =	63 (0.990)	3 (0.050)	3/252	NT	5.1%	coding (121/666 nt)	agmR	glycerol metabolism activator
	?	NC_002947	3053837 =	52 (0.860)					coding (74/666 nt)	agmR	glycerol metabolism activator
*	?	NC_002947	= 3078702	50 (0.790)	3 (0.050)	3/252	NT	6.4%	coding (564/1410 nt)	PP_2688	hypothetical protein
	?	NC_002947	= 3078728	40 (0.660)					coding (538/1410 nt)	PP_2688	hypothetical protein
*	?	NC_002947	3112998 =	44 (0.690)	3 (0.050)	3/248	NT	6.7%	coding (149/771 nt)	PP_2727	C factor cell‑cell signaling protein
	?	NC_002947	3113039 =	42 (0.710)					coding (108/771 nt)	PP_2727	C factor cell‑cell signaling protein
*	?	NC_002947	= 3135380	40 (0.630)	4 (0.070)	4/254	NT	9.7%	coding (33/1335 nt)	PP_2752	hypothetical protein
	?	NC_002947	= 3135418	36 (0.590)					coding (71/1335 nt)	PP_2752	hypothetical protein
*	?	NC_002947	= 3164634	48 (0.760)	3 (0.050)	3/258	NT	6.0%	coding (145/1083 nt)	PP_2779	putative Beta‑ketoacyl synthase
	?	NC_002947	= 3164662	47 (0.760)					coding (173/1083 nt)	PP_2779	putative Beta‑ketoacyl synthase
*	?	NC_002947	3214219 =	44 (0.690)	3 (0.050)	3/254	NT	6.2%	coding (134/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	3214270 =	48 (0.790)					coding (185/3129 nt)	mexD	multidrug RND transporter MexD
*	?	NC_002947	3262113 =	58 (0.910)	3 (0.050)	3/252	NT	5.1%	coding (13/570 nt)	PP_2859	hypothetical protein
	?	NC_002947	3262153 =	57 (0.950)					coding (536/567 nt)	PP_2860	nicotinamide mononucleotide transporter
*	?	NC_002947	3296889 =	47 (0.740)	3 (0.050)	3/254	NT	6.2%	intergenic (‑15/‑104)	PP_2898/PP_2899	hypothetical protein/hypothetical protein
	?	NC_002947	3296931 =	46 (0.760)					intergenic (‑57/‑62)	PP_2898/PP_2899	hypothetical protein/hypothetical protein
*	?	NC_002947	3321451 =	58 (0.910)	3 (0.050)	3/250	NT	5.8%	coding (389/942 nt)	PP_2921	hypothetical protein
	?	NC_002947	3321517 =	43 (0.720)					coding (455/942 nt)	PP_2921	hypothetical protein
*	?	NC_002947	3366553 =	47 (0.740)	18 (0.290)	17/262	NT	30.2%	intergenic (+219/‑142)	PP_2962/PP_2964	alcohol dehydrogenase/transposase
	?	NC_002947	4950854 =	37 (0.590)					intergenic (‑4/+153)	fliL/fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
*	?	NC_002947	= 3383565	58 (0.910)	20 (0.310)	17/266	NT	29.6%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 4950858	37 (0.580)					intergenic (‑8/+149)	fliL/fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
*	?	NC_002947	= 3387133	43 (0.680)	3 (0.050)	3/252	NT	7.0%	coding (977/1017 nt)	PP_2988	alcohol dehydrogenase
	?	NC_002947	= 3387150	39 (0.650)					coding (994/1017 nt)	PP_2988	alcohol dehydrogenase
*	?	NC_002947	= 3446911	55 (0.870)	3 (0.050)	3/258	NT	5.6%	coding (225/552 nt)	PP_3066	lytic enzyme
	?	NC_002947	= 3446953	48 (0.780)					coding (267/552 nt)	PP_3066	lytic enzyme
*	?	NC_002947	= 3459711	55 (0.870)	4 (0.070)	4/252	NT	5.9%	coding (651/1446 nt)	PP_3075	transcriptional regulator
	?	NC_002947	= 3459774	76 (1.260)					coding (588/1446 nt)	PP_3075	transcriptional regulator
*	?	NC_002947	= 3475318	56 (0.880)	3 (0.050)	3/252	NT	5.4%	coding (1395/2517 nt)	PP_3087	excinuclease ABC subunit A
	?	NC_002947	= 3475352	52 (0.860)					coding (1361/2517 nt)	PP_3087	excinuclease ABC subunit A
*	?	NC_002947	3512773 =	46 (0.720)	3 (0.050)	3/252	NT	6.0%	coding (1441/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	3512842 =	50 (0.830)					coding (1510/4158 nt)	PP_3108	rhs family protein
*	?	NC_002947	3531291 =	64 (1.010)	4 (0.070)	4/254	NT	6.5%	intergenic (+6/+177)	dnaEB/yeaE	error‑prone DNA polymerase/methylglyoxal reductase
	?	NC_002947	3531352 =	54 (0.890)					intergenic (+67/+116)	dnaEB/yeaE	error‑prone DNA polymerase/methylglyoxal reductase
*	?	NC_002947	= 3544818	42 (0.660)	3 (0.050)	3/254	NT	7.3%	coding (617/2607 nt)	PP_3130	hypothetical protein
	?	NC_002947	= 3544850	36 (0.590)					coding (585/2607 nt)	PP_3130	hypothetical protein
*	?	NC_002947	3548538 =	54 (0.850)	3 (0.050)	3/252	NT	6.3%	coding (61/195 nt)	PP_5588	hypothetical protein
	?	NC_002947	3548597 =	38 (0.630)					coding (120/195 nt)	PP_5588	hypothetical protein
*	?	NC_002947	= 3568534	66 (1.040)	4 (0.070)	4/256	NT	5.7%	coding (1091/1998 nt)	PP_3150	hypothetical protein
	?	NC_002947	= 3568560	70 (1.150)					coding (1117/1998 nt)	PP_3150	hypothetical protein
*	?	NC_002947	3589655 =	64 (1.010)	5 (0.080)	3/254	NT	7.7%	coding (176/1251 nt)	nicP‑I	porin‑like protein
	?	NC_002947	3589704 =	58 (0.960)					coding (225/1251 nt)	nicP‑I	porin‑like protein
*	?	NC_002947	3596640 =	61 (0.960)	3 (0.050)	3/254	NT	5.1%	coding (366/1098 nt)	nemA	FMN‑linked N‑ethylmaleimide reductase
	?	NC_002947	3596740 =	54 (0.890)					coding (266/1098 nt)	nemA	FMN‑linked N‑ethylmaleimide reductase
*	?	NC_002947	= 3659448	69 (1.090)	6 (0.100)	5/260	NT	7.9%	coding (418/1620 nt)	PP_3223	ABC transporter substrate‑binding protein
	?	NC_002947	= 3659487	72 (1.160)					coding (379/1620 nt)	PP_3223	ABC transporter substrate‑binding protein
*	?	NC_002947	= 3664422	74 (1.160)	4 (0.070)	4/252	NT	5.3%	coding (312/966 nt)	PP_3228	aliphatic sulfonate‑binding protein
	?	NC_002947	= 3664505	74 (1.230)					coding (395/966 nt)	PP_3228	aliphatic sulfonate‑binding protein
*	?	NC_002947	3823283 =	67 (1.050)	4 (0.070)	4/248	NT	6.0%	coding (907/951 nt)	kguK	2‑ketogluconokinase
	?	NC_002947	3823331 =	63 (1.060)					coding (859/951 nt)	kguK	2‑ketogluconokinase
*	?	NC_002947	= 3855026	59 (0.930)	5 (0.080)	5/254	NT	7.4%	coding (177/888 nt)	PP_3403	quercetin 2,3‑dioxygenase
	?	NC_002947	= 3855078	68 (1.120)					coding (125/888 nt)	PP_3403	quercetin 2,3‑dioxygenase
*	?	NC_002947	= 3903930	56 (0.880)	5 (0.080)	5/252	NT	8.5%	coding (813/1593 nt)	ilvA‑I	threonine deaminase
	?	NC_002947	= 3903964	55 (0.910)					coding (779/1593 nt)	ilvA‑I	threonine deaminase
*	?	NC_002947	3947913 =	31 (0.490)	6 (0.120)	5/210	NT	23.8%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3947998 =	14 (0.280)					coding (51/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	= 3971413	NA (NA)	3 (0.050)	3/254	NT	NA	coding (1332/1536 nt)	PP_3501	transposase
	?	NC_002947	= 3971468	NA (NA)					coding (1387/1536 nt)	PP_3501	transposase
*	?	NC_002947	3991459 =	76 (1.200)	4 (0.070)	4/248	NT	5.6%	coding (168/894 nt)	PP_3517	hypothetical protein
	?	NC_002947	3991561 =	64 (1.080)					coding (66/894 nt)	PP_3517	hypothetical protein
*	?	NC_002947	= 3997287	45 (0.710)	3 (0.050)	3/252	NT	6.4%	intergenic (‑125/‑28)	PP_3525/PP_3526	hypothetical protein/AraC family transcriptional regulator
	?	NC_002947	= 3997310	45 (0.750)					intergenic (‑148/‑5)	PP_3525/PP_3526	hypothetical protein/AraC family transcriptional regulator
*	?	NC_002947	= 4030870	55 (0.870)	3 (0.050)	3/256	NT	5.1%	coding (533/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 4030910	58 (0.950)					coding (573/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
*	?	NC_002947	4098066 =	55 (0.870)	3 (0.050)	3/248	NT	5.5%	coding (624/975 nt)	qor‑II	quinone oxidoreductase
	?	NC_002947	4098108 =	51 (0.860)					coding (582/975 nt)	qor‑II	quinone oxidoreductase
*	?	NC_002947	4120626 =	61 (0.960)	4 (0.070)	4/254	NT	6.5%	coding (1042/1344 nt)	adhB	alcohol dehydrogenase cytochrome c subunit
	?	NC_002947	4120677 =	56 (0.920)					coding (1093/1344 nt)	adhB	alcohol dehydrogenase cytochrome c subunit
*	?	NC_002947	4140591 =	49 (0.770)	4 (0.070)	4/246	NT	8.8%	coding (219/597 nt)	PP_5609	hypothetical protein
	?	NC_002947	4140641 =	38 (0.650)					coding (269/597 nt)	PP_5609	hypothetical protein
*	?	NC_002947	= 4147675	48 (0.760)	4 (0.070)	4/254	NT	7.8%	coding (1758/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4147716	49 (0.810)					coding (1799/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 4242093	58 (0.910)	4 (0.070)	4/256	NT	6.6%	coding (744/1104 nt)	PP_3719	putrescine‑binding protein
	?	NC_002947	= 4242113	58 (0.950)					coding (724/1104 nt)	PP_3719	putrescine‑binding protein
*	?	NC_002947	4270835 =	61 (0.960)	3 (0.050)	3/254	NT	5.8%	coding (975/1896 nt)	mrdA‑I	transpeptidase
	?	NC_002947	4270923 =	40 (0.660)					coding (1063/1896 nt)	mrdA‑I	transpeptidase
*	?	NC_002947	= 4297999	73 (1.150)	4 (0.070)	4/254	NT	5.7%	coding (55/822 nt)	PP_3768	shikimate 5‑dehydrogenase
	?	NC_002947	= 4298031	63 (1.040)					coding (23/822 nt)	PP_3768	shikimate 5‑dehydrogenase
*	?	NC_002947	= 4354818	44 (0.690)	4 (0.070)	4/254	NT	8.8%	coding (18/681 nt)	modB	molybdate ABC transporter permease ModB
	?	NC_002947	= 4354847	41 (0.680)					coding (47/681 nt)	modB	molybdate ABC transporter permease ModB
*	?	NC_002947	4425408 =	40 (0.630)	3 (0.050)	3/254	NT	6.6%	intergenic (‑466/‑334)	PP_5647/PP_3917	hypothetical protein/hypothetical protein
	?	NC_002947	4425475 =	47 (0.770)					intergenic (‑533/‑267)	PP_5647/PP_3917	hypothetical protein/hypothetical protein
*	?	NC_002947	4427633 =	64 (1.010)	4 (0.070)	3/252	NT	6.2%	intergenic (‑42/+113)	PP_t61/sohB	tRNA‑Cys/peptidase
	?	NC_002947	4427669 =	60 (1.000)					intergenic (‑78/+77)	PP_t61/sohB	tRNA‑Cys/peptidase
*	?	NC_002947	= 4485477	70 (1.100)	7 (0.120)	6/254	NT	9.7%	coding (653/1302 nt)	PP_3977	hypothetical protein
	?	NC_002947	= 4485516	63 (1.040)					coding (692/1302 nt)	PP_3977	hypothetical protein
*	?	NC_002947	= 4551973	18 (0.280)	4 (0.080)	4/200	NT	17.6%	intergenic (+67/+114)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
	?	NC_002947	= 4552024	24 (0.500)					intergenic (+118/+63)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
*	?	NC_002947	4561192 =	49 (0.770)	3 (0.050)	3/252	NT	6.1%	coding (357/1404 nt)	PP_4048	hypothetical protein
	?	NC_002947	4561273 =	46 (0.760)					coding (276/1404 nt)	PP_4048	hypothetical protein
*	?	NC_002947	= 4561859	46 (0.720)	3 (0.050)	3/260	NT	5.9%	coding (2002/2316 nt)	vgrG‑III	type VI secretion system protein
	?	NC_002947	= 4561916	50 (0.810)					coding (1945/2316 nt)	vgrG‑III	type VI secretion system protein
*	?	NC_002947	4570328 =	71 (1.120)	4 (0.070)	4/252	NT	5.6%	coding (192/2775 nt)	treY	maltooligosyl trehalose synthase
	?	NC_002947	4570366 =	68 (1.130)					coding (230/2775 nt)	treY	maltooligosyl trehalose synthase
*	?	NC_002947	4576350 =	36 (0.570)	3 (0.050)	3/252	NT	8.8%	coding (747/795 nt)	ybhP‑II	phosphohydrolase
	?	NC_002947	4576394 =	28 (0.470)					coding (791/795 nt)	ybhP‑II	phosphohydrolase
*	?	NC_002947	4586034 =	24 (0.380)	6 (0.110)	6/222	NT	33.3%	intergenic (+117/+98)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586105 =	4 (0.080)					intergenic (+188/+27)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4626524 =	NA (NA)	7 (0.110)	3/266	NT	NA	coding (980/1533 nt)	PP_4091	transposase
	?	NC_002947	4626581 =	NA (NA)					coding (923/1533 nt)	PP_4091	transposase
*	?	NC_002947	= 4660101	58 (0.910)	3 (0.050)	3/254	NT	5.4%	coding (459/1362 nt)	nuoF	NADH‑quinone oxidoreductase subunit F
	?	NC_002947	= 4660153	49 (0.810)					coding (511/1362 nt)	nuoF	NADH‑quinone oxidoreductase subunit F
*	?	NC_002947	4700092 =	53 (0.830)	5 (0.080)	4/254	NT	8.9%	coding (596/2655 nt)	kdpD	sensor protein
	?	NC_002947	4700129 =	52 (0.860)					coding (559/2655 nt)	kdpD	sensor protein
*	?	NC_002947	= 4707865	59 (0.930)	4 (0.070)	4/256	NT	6.7%	coding (398/855 nt)	PP_4164	alpha/beta hydrolase
	?	NC_002947	= 4707892	55 (0.900)					coding (371/855 nt)	PP_4164	alpha/beta hydrolase
*	?	NC_002947	4710018 =	48 (0.760)	5 (0.080)	4/260	NT	9.8%	coding (118/459 nt)	sixA	phosphohistidine phosphatase SixA
	?	NC_002947	4710053 =	45 (0.720)					coding (83/459 nt)	sixA	phosphohistidine phosphatase SixA
*	?	NC_002947	4757333 =	61 (0.960)	4 (0.070)	3/252	NT	6.3%	coding (606/1413 nt)	ompQ	outer membrane pyoverdine efflux protein
	?	NC_002947	4757379 =	62 (1.030)					coding (652/1413 nt)	ompQ	outer membrane pyoverdine efflux protein
*	?	NC_002947	4808174 =	1 (0.020)	24 (0.510)	20/196	NT	37.9%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	78 (1.670)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4808179	1 (0.020)	17 (0.290)	14/242	NT	27.4%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	89 (1.540)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4893900	68 (1.070)	4 (0.060)	4/264	NT	5.5%	coding (168/876 nt)	PP_4302	urea transporter
	?	NC_002947	= 4893957	70 (1.110)					coding (225/876 nt)	PP_4302	urea transporter
*	?	NC_002947	= 4945457	41 (0.650)	3 (0.050)	3/248	NT	6.7%	coding (1124/1143 nt)	flhB	flagellin export apparatus substrate specificity protein
	?	NC_002947	= 4945546	46 (0.780)					coding (1035/1143 nt)	flhB	flagellin export apparatus substrate specificity protein
*	?	NC_002947	4960320 =	73 (1.150)	5 (0.080)	4/260	NT	6.8%	coding (151/1779 nt)	fliF	flagellar M‑ring protein
	?	NC_002947	4960368 =	66 (1.060)					coding (103/1779 nt)	fliF	flagellar M‑ring protein
*	?	NC_002947	4979191 =	51 (0.800)	3 (0.050)	3/250	NT	5.4%	coding (231/786 nt)	flgG	flagellar basal‑body rod protein FlgG
	?	NC_002947	4979266 =	58 (0.970)					coding (156/786 nt)	flgG	flagellar basal‑body rod protein FlgG
*	?	NC_002947	5037082 =	NA (NA)	4 (0.060)	3/258	NT	NA	coding (174/1536 nt)	PP_4443	transposase
	?	NC_002947	5037120 =	NA (NA)					coding (212/1536 nt)	PP_4443	transposase
*	?	NC_002947	5045678 =	34 (0.540)	24 (0.390)	22/260	NT	41.9%	intergenic (‑45/+48)	PP_4449/PP_5682	hypothetical protein/hypothetical protein
	?	NC_002947	= 5545666	NA (NA)					intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 5045679	34 (0.540)	18 (0.290)	18/262	NT	35.0%	intergenic (‑46/+47)	PP_4449/PP_5682	hypothetical protein/hypothetical protein
	?	NC_002947	5222582 =	NA (NA)					coding (8/840 nt)	PP_4602	AraC family transcriptional regulator
*	?	NC_002947	= 5195540	56 (0.880)	4 (0.070)	3/250	NT	6.2%	coding (289/918 nt)	PP_4575	urea amidolyase‑like protein
	?	NC_002947	= 5195562	69 (1.160)					coding (267/918 nt)	PP_4575	urea amidolyase‑like protein
*	?	NC_002947	= 5199250	66 (1.040)	6 (0.100)	6/256	NT	8.8%	coding (537/912 nt)	PP_4579	LysR family transcriptional regulator
	?	NC_002947	= 5199274	61 (1.000)					coding (561/912 nt)	PP_4579	LysR family transcriptional regulator
*	?	NC_002947	5199879 =	50 (0.790)	3 (0.050)	3/260	NT	5.5%	coding (341/522 nt)	PP_4580	hypothetical protein
	?	NC_002947	5199919 =	55 (0.890)					coding (301/522 nt)	PP_4580	hypothetical protein
*	?	NC_002947	5207123 =	67 (1.050)	6 (0.100)	6/256	NT	8.2%	coding (55/594 nt)	PP_4588	nitroreductase family oxidoreductase
	?	NC_002947	5207163 =	70 (1.150)					coding (95/594 nt)	PP_4588	nitroreductase family oxidoreductase
*	?	NC_002947	5210219 =	50 (0.790)	5 (0.090)	5/234	NT	9.1%	intergenic (‑85/+93)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
	?	NC_002947	5210310 =	56 (1.000)					intergenic (‑176/+2)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
*	?	NC_002947	= 5214275	52 (0.820)	3 (0.050)	3/252	NT	5.4%	intergenic (+10/+100)	ybaO/PP_4596	LRP‑like transcriptional regulator/putative oxidoreductase
	?	NC_002947	= 5214357	56 (0.930)					intergenic (+92/+18)	ybaO/PP_4596	LRP‑like transcriptional regulator/putative oxidoreductase
*	?	NC_002947	5330100 =	59 (0.930)	6 (0.100)	6/254	NT	9.4%	coding (289/714 nt)	sfsA	sugar fermentation stimulation protein A
	?	NC_002947	5330147 =	59 (0.970)					coding (242/714 nt)	sfsA	sugar fermentation stimulation protein A
*	?	NC_002947	= 5407810	61 (0.960)	4 (0.070)	4/248	NT	6.8%	coding (928/1308 nt)	PP_4752	Xaa‑Pro aminopeptidase
	?	NC_002947	= 5407865	53 (0.890)					coding (873/1308 nt)	PP_4752	Xaa‑Pro aminopeptidase
*	?	NC_002947	5425658 =	69 (1.090)	4 (0.060)	4/266	NT	5.5%	coding (194/1239 nt)	PP_4765	hypothetical protein
	?	NC_002947	5425689 =	68 (1.070)					coding (225/1239 nt)	PP_4765	hypothetical protein
*	?	NC_002947	= 5432234	55 (0.870)	5 (0.080)	4/260	NT	7.7%	coding (88/519 nt)	PP_5713	hypothetical protein
	?	NC_002947	= 5432263	66 (1.060)					coding (117/519 nt)	PP_5713	hypothetical protein
*	?	NC_002947	5432474 =	82 (1.290)	4 (0.070)	4/252	NT	5.1%	coding (328/519 nt)	PP_5713	hypothetical protein
	?	NC_002947	5432525 =	71 (1.180)					coding (379/519 nt)	PP_5713	hypothetical protein
*	?	NC_002947	5472435 =	76 (1.200)	4 (0.060)	4/258	NT	5.9%	coding (5/519 nt) coding (384/420 nt)	rlmH rsfS	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH ribosomal silencing factor RsfS
	?	NC_002947	5472494 =	53 (0.860)					coding (325/420 nt)	rsfS	ribosomal silencing factor RsfS
*	?	NC_002947	= 5482160	82 (1.290)	7 (0.120)	4/254	NT	8.4%	coding (86/1014 nt)	dusB	tRNA dihydrouridine synthase DusB
	?	NC_002947	= 5482198	75 (1.240)					coding (124/1014 nt)	dusB	tRNA dihydrouridine synthase DusB
*	?	NC_002947	= 5487779	73 (1.150)	7 (0.120)	7/252	NT	8.6%	coding (1108/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 5487836	79 (1.310)					coding (1165/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	5512790 =	79 (1.240)	5 (0.090)	5/246	NT	6.2%	coding (426/858 nt)	urtD	ABC transporter ATP‑binding protein
	?	NC_002947	5512861 =	78 (1.330)					coding (497/858 nt)	urtD	ABC transporter ATP‑binding protein
*	?	NC_002947	= 5533581	70 (1.100)	4 (0.070)	4/246	NT	6.1%	coding (894/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 5533633	58 (0.990)					coding (842/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein
*	?	NC_002947	= 5541751	53 (0.830)	3 (0.050)	3/248	NT	5.2%	coding (948/1398 nt)	dnaB	replicative DNA helicase
	?	NC_002947	= 5541776	60 (1.010)					coding (923/1398 nt)	dnaB	replicative DNA helicase
*	?	NC_002947	5545321 =	NA (NA)	71 (1.130)	53/262	NT	98.6%	intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5621245	1 (0.020)					coding (19/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5545666	NA (NA)	70 (1.130)	57/260	NT	98.6%	intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	5621244 =	1 (0.020)					coding (20/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5570793	72 (1.130)	4 (0.070)	4/250	NT	5.0%	coding (480/1065 nt)	queG	epoxyqueuosine reductase
	?	NC_002947	= 5570835	83 (1.390)					coding (522/1065 nt)	queG	epoxyqueuosine reductase
*	?	NC_002947	= 5579189	63 (0.990)	4 (0.070)	4/250	NT	6.1%	coding (512/864 nt)	psd	phosphatidylserine decarboxylase
	?	NC_002947	= 5579229	65 (1.090)					coding (552/864 nt)	psd	phosphatidylserine decarboxylase
*	?	NC_002947	5612843 =	60 (0.940)	7 (0.110)	7/256	NT	10.2%	coding (665/813 nt)	PP_4932	D‑arabinose 1‑dehydrogenase
	?	NC_002947	5612874 =	65 (1.060)					coding (696/813 nt)	PP_4932	D‑arabinose 1‑dehydrogenase
*	?	NC_002947	= 5625150	52 (0.820)	4 (0.060)	4/258	NT	6.2%	coding (611/1131 nt)	PP_4943	glycosyl transferase
	?	NC_002947	= 5625233	70 (1.140)					coding (528/1131 nt)	PP_4943	glycosyl transferase
*	?	NC_002947	5643629 =	75 (1.180)	6 (0.100)	4/246	NT	8.3%	coding (292/1182 nt)	yhiN	FAD/NAD(P)‑binding domain‑containing oxidoreductase
	?	NC_002947	5643689 =	64 (1.090)					coding (352/1182 nt)	yhiN	FAD/NAD(P)‑binding domain‑containing oxidoreductase
*	?	NC_002947	= 5661040	64 (1.010)	4 (0.070)	4/246	NT	5.6%	coding (665/1701 nt)	ligB	DNA ligase B
	?	NC_002947	= 5661069	76 (1.290)					coding (694/1701 nt)	ligB	DNA ligase B
*	?	NC_002947	= 5671638	47 (0.740)	6 (0.120)	6/218	NT	12.2%	intergenic (+57/‑113)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	= 5671675	48 (0.920)					intergenic (+94/‑76)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
*	?	NC_002947	5731004 =	72 (1.130)	4 (0.070)	4/254	NT	5.7%	coding (336/804 nt)	hutG	N‑formylglutamate deformylase
	?	NC_002947	5731040 =	64 (1.060)					coding (300/804 nt)	hutG	N‑formylglutamate deformylase
*	?	NC_002947	5738565 =	67 (1.050)	4 (0.070)	4/254	NT	6.2%	coding (398/747 nt)	hutC	histidine utilization repressor
	?	NC_002947	5738623 =	58 (0.960)					coding (340/747 nt)	hutC	histidine utilization repressor
*	?	NC_002947	= 5745143	63 (0.990)	4 (0.070)	3/252	NT	6.7%	coding (722/2451 nt)	glgP	glycogen phosphorylase
	?	NC_002947	= 5745173	52 (0.860)					coding (692/2451 nt)	glgP	glycogen phosphorylase
*	?	NC_002947	5807871 =	69 (1.090)	3 (0.050)	3/252	NT	5.0%	intergenic (+6/+149)	mrcA/maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
	?	NC_002947	5807917 =	48 (0.800)					intergenic (+52/+103)	mrcA/maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
*	?	NC_002947	= 5838979	52 (0.820)	3 (0.050)	3/244	NT	5.3%	coding (349/993 nt)	yheT	putative hydrolase
	?	NC_002947	= 5839021	60 (1.030)					coding (391/993 nt)	yheT	putative hydrolase
*	?	NC_002947	5864144 =	68 (1.070)	3 (0.050)	3/252	NT	5.3%	coding (2007/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
	?	NC_002947	5864222 =	43 (0.710)					coding (1929/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
*	?	NC_002947	5870261 =	24 (0.380)	4 (0.080)	3/208	NT	19.6%	intergenic (+22/+112)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	5870354 =	14 (0.280)					intergenic (+115/+19)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	= 5870289	25 (0.390)	3 (0.060)	3/208	NT	15.2%	intergenic (+50/+84)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	= 5870324	14 (0.280)					intergenic (+85/+49)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	5874548 =	79 (1.240)	5 (0.090)	5/244	NT	7.0%	intergenic (‑40/+108)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	5874630 =	61 (1.050)					intergenic (‑122/+26)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
*	?	NC_002947	= 5913597	82 (1.290)	5 (0.080)	5/254	NT	6.3%	coding (866/1377 nt)	spuI	glutamylpolyamine synthetase
	?	NC_002947	= 5913629	71 (1.170)					coding (898/1377 nt)	spuI	glutamylpolyamine synthetase
*	?	NC_002947	= 5914184	18 (0.280)	7 (0.140)	7/210	NT	31.7%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5914224	16 (0.320)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5924517	54 (0.850)	4 (0.070)	4/256	NT	6.7%	intergenic (‑87/+110)	gcvP‑II/gcvH‑II	glycine dehydrogenase/glycine cleavage system protein H
	?	NC_002947	= 5924555	60 (0.980)					intergenic (‑125/+72)	gcvP‑II/gcvH‑II	glycine dehydrogenase/glycine cleavage system protein H
*	?	NC_002947	6019248 =	64 (1.010)	3 (0.060)	3/220	NT	5.6%	intergenic (‑49/+96)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	6019324 =	48 (0.910)					intergenic (‑125/+20)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
*	?	NC_002947	= 6059392	47 (0.740)	6 (0.100)	5/250	NT	11.5%	coding (432/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059413	48 (0.800)					coding (453/1404 nt)	PP_5311	signal transduction protein
*	?	NC_002947	= 6059891	56 (0.880)	3 (0.050)	3/254	NT	5.6%	coding (931/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059929	47 (0.770)					coding (969/1404 nt)	PP_5311	signal transduction protein
*	?	NC_002947	= 6060444	70 (1.100)	6 (0.110)	5/238	NT	8.1%	intergenic (+80/+101)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	= 6060503	74 (1.300)					intergenic (+139/+42)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	6079717 =	58 (0.910)	3 (0.050)	3/258	NT	5.3%	coding (131/399 nt)	PP_5331	acyl‑CoA thioesterase
	?	NC_002947	6079791 =	51 (0.830)					coding (205/399 nt)	PP_5331	acyl‑CoA thioesterase
*	?	NC_002947	6175795 =	71 (1.120)	4 (0.070)	3/256	NT	5.7%	coding (802/1377 nt)	atpD	ATP synthase subunit beta
	?	NC_002947	6175830 =	65 (1.060)					coding (767/1377 nt)	atpD	ATP synthase subunit beta