breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	6,332	C→A	5.7%	R17R (CGG→CGT)	trmE ←	GTPase
RA	6,429	Δ1 bp	8.1%	intergenic (‑47/+42)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	6,433:1	+T	8.5%	intergenic (‑51/+38)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	11,040	T→A	6.0%	L500Q (CTG→CAG)	dnaA →	chromosomal replication initiator protein
RA	49,424:1	+C	5.8%	coding (1226/1251 nt)	czcB‑I ←	cobalt‑zinc‑cadmium resistance protein
RA	58,626	T→A	5.5%	intergenic (‑537/+151)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,627	G→C	6.3%	intergenic (‑538/+150)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,628	T→A	5.6%	intergenic (‑539/+149)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	69,935	G→C	5.2%	A657G (GCC→GGC)	glyS ←	glycine‑tRNA ligase subunit beta
RA	85,081	T→G	11.9%	intergenic (+59/+71)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	88,653	T→A	6.3%	Q222L (CAG→CTG)	betC ←	choline‑sulfatase
RA	122,224	G→T	5.4%	intergenic (+34/+27)	katE → / ← PP_0116	hydroperoxidase/putative lipoprotein
RA	127,121	C→G	6.0%	intergenic (‑31/+39)	thrB ← / ← PP_0122	homoserine kinase/hypothetical protein
RA	142,885	A→G	7.2%	intergenic (+7/‑168)	PP_0134 → / → PP_5428	hypothetical protein/hypothetical protein
RA	142,887	T→A	6.4%	intergenic (+9/‑166)	PP_0134 → / → PP_5428	hypothetical protein/hypothetical protein
RA	142,889	C→T	6.4%	intergenic (+11/‑164)	PP_0134 → / → PP_5428	hypothetical protein/hypothetical protein
RA	155,543	G→T	6.4%	intergenic (‑248/+35)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	155,546	A→C	6.5%	intergenic (‑251/+32)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	188,613	T→C	8.6%	L241P (CTG→CCG)	PP_0165 →	GGDEF domain‑containing protein
RA	188,615	A→G	8.6%	T242A (ACC→GCC) ‡	PP_0165 →	GGDEF domain‑containing protein
RA	188,616	C→T	8.6%	T242I (ACC→ATC) ‡	PP_0165 →	GGDEF domain‑containing protein
RA	188,618	G→A	9.2%	G243R (GGG→AGG)	PP_0165 →	GGDEF domain‑containing protein
RA	195,559	C→A	24.6%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	10.1%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	10.1%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	32.9%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	21.0%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	20.1%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	22.0%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	19.5%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	13.1%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	23.5%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	11.7%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	7.9%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,185	C→T	6.2%	T897T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	14.7%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	26.7%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	29.2%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	10.6%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	22.4%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	239,163	Δ1 bp	6.2%	coding (244/768 nt)	hemD →	uroporphyrinogen‑III synthase
RA	239,167	A→T	6.3%	Q83L (CAG→CTG)	hemD →	uroporphyrinogen‑III synthase
RA	239,169:1	+G	6.2%	coding (250/768 nt)	hemD →	uroporphyrinogen‑III synthase
RA	261,137	T→C	5.2%	L156P (CTG→CCG)	tauB‑I →	taurine ABC transporter ATP‑binding protein
RA	272,007	A→T	11.4%	intergenic (+12/+17)	PP_0218 → / ← metP	sensory box protein/L,D‑methionine D‑methionine ABC transporter permease
RA	272,008	A→T	12.6%	intergenic (+13/+16)	PP_0218 → / ← metP	sensory box protein/L,D‑methionine D‑methionine ABC transporter permease
RA	272,009	A→T	11.6%	intergenic (+14/+15)	PP_0218 → / ← metP	sensory box protein/L,D‑methionine D‑methionine ABC transporter permease
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	284,586	T→A	13.7%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,587	T→A	14.3%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	285,287	G→C	5.5%	Q55E (CAG→GAG)	atsK ←	alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	286,678	C→T	6.2%	A149T (GCT→ACT)	tauB‑II ←	taurine ABC transporter ATP‑binding protein
RA	287,067	G→C	7.1%	P19R (CCG→CGG) ‡	tauB‑II ←	taurine ABC transporter ATP‑binding protein
RA	287,068	G→C	7.0%	P19A (CCG→GCG) ‡	tauB‑II ←	taurine ABC transporter ATP‑binding protein
RA	289,946	T→G	5.7%	intergenic (+30/‑136)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	322,133	G→A	28.9%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	27.8%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	325,135	T→C	6.1%	Y141H (TAC→CAC)	oprQ →	outer‑membrane porin D
RA	326,065	C→A	8.9%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	326,068	T→G	9.1%	A555A (GCA→GCC)	PP_0269 ←	glutamate synthase large subunit
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	344,032	A→G	6.0%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,041	Δ1 bp	5.7%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	5.8%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	350,615	G→A	5.4%	G10S (GGC→AGC)	hisH →	imidazole glycerol phosphate synthase subunit HisH
RA	351,749	C→T	7.4%	Q79* (CAG→TAG) ‡	hisA →	phosphoribosylformimino‑5‑aminoimidazole carboxamide ribonucleotide isomerase
RA	351,750	A→G	7.3%	Q79R (CAG→CGG) ‡	hisA →	phosphoribosylformimino‑5‑aminoimidazole carboxamide ribonucleotide isomerase
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	370,550	C→T	6.5%	Q11* (CAG→TAG) ‡	dgcA →	dimethylglycine dehydrogenase subunit
RA	370,551	A→G	6.5%	Q11R (CAG→CGG) ‡	dgcA →	dimethylglycine dehydrogenase subunit
RA	370,748	A→G	7.2%	N77D (AAC→GAC)	dgcA →	dimethylglycine dehydrogenase subunit
RA	370,751	C→A	7.0%	L78M (CTG→ATG) ‡	dgcA →	dimethylglycine dehydrogenase subunit
RA	370,752	T→G	7.2%	L78R (CTG→CGG) ‡	dgcA →	dimethylglycine dehydrogenase subunit
RA	385,475	A→C	7.8%	intergenic (+15/+20)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	385,476	C→G	8.0%	intergenic (+16/+19)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	385,477	G→T	8.0%	intergenic (+17/+18)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	388,722	T→A	5.6%	L198Q (CTG→CAG)	soxB →	sarcosine oxidase subunit beta
RA	395,846	C→A	7.6%	intergenic (+28/+176)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,847	A→T	7.6%	intergenic (+29/+175)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,848	T→G	7.5%	intergenic (+30/+174)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	401,370	Δ1 bp	6.0%	coding (956/1059 nt)	PP_0334 →	transposase
RA	401,371	G→T	6.0%	R319S (AGG→AGT)	PP_0334 →	transposase
RA	402,065	A→C	8.7%	I154S (ATC→AGC)	PP_0335 ←	glutathione S‑transferase family protein
RA	402,067	C→G	8.7%	L153L (CTG→CTC) ‡	PP_0335 ←	glutathione S‑transferase family protein
RA	402,069	G→T	8.8%	L153M (CTG→ATG) ‡	PP_0335 ←	glutathione S‑transferase family protein
RA	418,295	C→G	6.9%	L26L (CTC→CTG)	PP_0345 →	heptose kinase WapP
RA	418,296	C→G	6.8%	Q27E (CAG→GAG)	PP_0345 →	heptose kinase WapP
RA	425,348	A→C	10.3%	intergenic (‑39/+18)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	425,349	A→T	6.8%	intergenic (‑40/+17)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	425,350	G→T	7.2%	intergenic (‑41/+16)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	431,343	A→G	5.5%	I324T (ATC→ACC)	PP_0354 ←	CBS domain‑containing protein
RA	432,993	A→T	8.0%	intergenic (+18/+29)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,994	A→T	8.0%	intergenic (+19/+28)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,995	A→T	7.7%	intergenic (+20/+27)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	436,899	C→A	9.7%	W130L (TGG→TTG)	PP_0358 ←	membrane protein
RA	445,086	T→G	8.8%	intergenic (+59/‑229)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,087	G→A	7.3%	intergenic (+60/‑228)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,088	C→G	7.3%	intergenic (+61/‑227)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,090	T→C	7.6%	intergenic (+63/‑225)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,095	T→C	8.8%	intergenic (+68/‑220)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,105	A→T	12.0%	intergenic (+78/‑210)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,107	T→G	7.9%	intergenic (+80/‑208)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,115	G→A	12.4%	intergenic (+88/‑200)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,120	G→A	10.9%	intergenic (+93/‑195)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,122	C→G	11.0%	intergenic (+95/‑193)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,123	T→C	11.3%	intergenic (+96/‑192)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,124	C→A	12.6%	intergenic (+97/‑191)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	450,919	T→G	5.2%	noncoding (116/127 nt)	PP_mr05 →	RsmY ncRNA
RA	471,066	T→C	10.7%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,067	G→A	10.8%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	491,089	G→A	6.9%	N444N (AAC→AAT) ‡	lptD ←	LPS‑assembly protein LptD
RA	491,090	T→A	6.9%	N444I (AAC→ATC) ‡	lptD ←	LPS‑assembly protein LptD
RA	491,091	T→C	6.9%	N444D (AAC→GAC) ‡	lptD ←	LPS‑assembly protein LptD
RA	491,099	T→G	5.8%	D441A (GAC→GCC) ‡	lptD ←	LPS‑assembly protein LptD
RA	491,100	C→T	5.7%	D441N (GAC→AAC) ‡	lptD ←	LPS‑assembly protein LptD
RA	493,398	A→G	5.8%	H283R (CAC→CGC)	PP_0405 →	hypothetical protein
RA	498,339	A→G	6.3%	G737G (GGA→GGG)	PP_0409 →	two‑component system sensor histidine kinase
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	524,336	A→G	8.5%	intergenic (+203/‑613)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,349	G→C	9.6%	intergenic (+216/‑600)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,352	G→C	10.7%	intergenic (+219/‑597)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,365	C→T	8.5%	intergenic (+232/‑584)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	536,279	C→T	10.1%	noncoding (179/190 nt)	PP_mr06 ←	P27 ncRNA
RA	536,280	A→G	10.0%	noncoding (178/190 nt)	PP_mr06 ←	P27 ncRNA
RA	541,437	A→G	5.9%	Q1272R (CAG→CGG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	541,440	C→T	5.4%	P1273L (CCG→CTG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	543,727	A→G	6.4%	N656S (AAC→AGC)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	543,730	C→T	6.3%	A657V (GCT→GTT)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	546,002	G→A	9.4%	intergenic (+42/‑31)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,007	G→T	8.8%	intergenic (+47/‑26)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,008	A→T	7.2%	intergenic (+48/‑25)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,009	A→C	7.3%	intergenic (+49/‑24)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,014	T→C	8.4%	intergenic (+54/‑19)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	557,332	Δ1 bp	10.2%	intergenic (+75/‑134)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	557,336:1	+A	10.5%	intergenic (+79/‑130)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	583,795	G→A	7.1%	R554Q (CGG→CAG)	selB →	selenocysteyl‑tRNA‑specific translation elongation factor
RA	583,798	T→C	7.1%	L555P (CTG→CCG)	selB →	selenocysteyl‑tRNA‑specific translation elongation factor
RA	591,079	G→A	9.1%	R109H (CGC→CAC)	PP_0501 →	NAD‑dependent epimerase/dehydratase family protein
RA	591,082	T→C	8.8%	V110A (GTG→GCG)	PP_0501 →	NAD‑dependent epimerase/dehydratase family protein
RA	593,433	G→T	5.9%	E391* (GAG→TAG) ‡	PP_0503 →	MFS transporter
RA	593,434	A→C	6.1%	E391A (GAG→GCG) ‡	PP_0503 →	MFS transporter
RA	630,310	G→T	5.8%	H461Q (CAC→CAA)	PP_0544 ←	ethanolamine transporter
RA	644,641:1	+G	5.6%	coding (376/978 nt)	acoA ←	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha
RA	650,231	C→T	6.4%	intergenic (‑75/+25)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	650,236	C→T	6.3%	intergenic (‑80/+20)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	650,238	C→A	6.3%	intergenic (‑82/+18)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	650,239	T→G	6.6%	intergenic (‑83/+17)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	650,241	A→G	6.5%	intergenic (‑85/+15)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	650,246	A→G	6.3%	intergenic (‑90/+10)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	657,688	A→G	7.0%	H10R (CAT→CGT) ‡	PP_0565 →	Nudix hydrolase
RA	657,689	T→A	6.7%	H10Q (CAT→CAA) ‡	PP_0565 →	Nudix hydrolase
RA	657,690	C→T	6.9%	R11W (CGG→TGG)	PP_0565 →	Nudix hydrolase
RA	665,420	G→C	5.6%	A762A (GCG→GCC)	yfhM →	lipoprotein
RA	665,421	G→C	6.2%	G763R (GGC→CGC)	yfhM →	lipoprotein
RA	675,587	A→T	6.1%	C38S (TGC→AGC)	PP_0577 ←	hypothetical protein
RA	675,589	C→G	6.3%	G37A (GGC→GCC)	PP_0577 ←	hypothetical protein
RA	675,591	A→T	5.9%	A36A (GCT→GCA)	PP_0577 ←	hypothetical protein
RA	680,294	A→G	5.8%	N394S (AAC→AGC) ‡	PP_0582 →	thiolase family protein
RA	680,295	C→G	5.7%	N394K (AAC→AAG) ‡	PP_0582 →	thiolase family protein
RA	687,473	C→T	5.5%	S113L (TCG→TTG)	ydgK →	Bcr/CflA family multidrug resistance transporter
RA	697,214	T→C	6.2%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,225	C→G	8.5%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	8.9%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,722	A→G	52.7%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	5.6%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	5.5%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	5.6%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	707,561	T→C	5.0%	intergenic (‑213/‑38)	rpsT ← / → murJ	30S ribosomal protein S20/lipid II flippase
RA	707,563	T→A	5.1%	intergenic (‑215/‑36)	rpsT ← / → murJ	30S ribosomal protein S20/lipid II flippase
RA	707,565	G→A	5.2%	intergenic (‑217/‑34)	rpsT ← / → murJ	30S ribosomal protein S20/lipid II flippase
RA	713,084	C→G	8.2%	L25V (CTG→GTG)	lspA →	lipoprotein signal peptidase
RA	713,088	Δ1 bp	8.5%	coding (77/531 nt)	lspA →	lipoprotein signal peptidase
RA	713,096	A→G	13.0%	I29V (ATC→GTC) ‡	lspA →	lipoprotein signal peptidase
RA	713,097	T→A	13.3%	I29N (ATC→AAC) ‡	lspA →	lipoprotein signal peptidase
RA	713,098	C→T	13.1%	I29I (ATC→ATT) ‡	lspA →	lipoprotein signal peptidase
RA	713,105:1	+A	8.1%	coding (94/531 nt)	lspA →	lipoprotein signal peptidase
RA	713,109	C→G	7.9%	T33S (ACC→AGC)	lspA →	lipoprotein signal peptidase
RA	730,744	A→T	5.5%	D95V (GAC→GTC)	clpB →	chaperone protein ClpB
RA	733,645	A→T	15.4%	intergenic (+19/‑28)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,646	A→T	15.1%	intergenic (+20/‑27)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,647	A→T	15.9%	intergenic (+21/‑26)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	743,420	C→T	5.3%	intergenic (+99/+175)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,430	G→A	11.1%	intergenic (+109/+165)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,432	A→C	10.5%	intergenic (+111/+163)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,439	T→G	9.9%	intergenic (+118/+156)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,440	T→A	9.1%	intergenic (+119/+155)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,441	C→A	9.4%	intergenic (+120/+154)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,448	G→T	9.2%	intergenic (+127/+147)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,450	T→C	9.3%	intergenic (+129/+145)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,460	A→G	8.5%	intergenic (+139/+135)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	747,418	C→T	6.5%	intergenic (‑545/‑249)	PP_0638 ← / → PP_5448	transposase/hypothetical protein
RA	747,423	T→G	6.1%	intergenic (‑550/‑244)	PP_0638 ← / → PP_5448	transposase/hypothetical protein
RA	747,424	C→G	6.0%	intergenic (‑551/‑243)	PP_0638 ← / → PP_5448	transposase/hypothetical protein
RA	747,425	C→A	6.0%	intergenic (‑552/‑242)	PP_0638 ← / → PP_5448	transposase/hypothetical protein
RA	772,178	T→C	7.5%	intergenic (+39/‑160)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,179	T→G	7.5%	intergenic (+40/‑159)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,182	C→A	7.2%	intergenic (+43/‑156)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,183	G→A	7.9%	intergenic (+44/‑155)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	779,917	G→T	7.0%	A185D (GCC→GAC) ‡	PP_0670 ←	bile acid/Na+ symporter family transporter
RA	779,918	C→G	6.2%	A185P (GCC→CCC) ‡	PP_0670 ←	bile acid/Na+ symporter family transporter
RA	779,919	A→C	6.4%	G184G (GGT→GGG)	PP_0670 ←	bile acid/Na+ symporter family transporter
RA	780,556	A→C	7.2%	intergenic (‑86/+36)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,558	T→A	7.3%	intergenic (‑88/+34)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,560	G→T	7.4%	intergenic (‑90/+32)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	788,581	C→A	7.0%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,583	A→T	6.7%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,584	A→T	6.3%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	T→G	6.6%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,596	T→C	5.8%	intergenic (+46/‑167)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	794,952	T→A	5.3%	I365N (ATT→AAT)	PP_0680 →	ATP‑dependent protease‑like protein
RA	794,955	T→A	5.3%	L366Q (CTG→CAG)	PP_0680 →	ATP‑dependent protease‑like protein
RA	796,034	A→G	6.8%	M726V (ATG→GTG)	PP_0680 →	ATP‑dependent protease‑like protein
RA	799,761	G→T	12.4%	L238M (CTG→ATG)	ispB ←	octaprenyl diphosphate synthase
RA	826,693	G→C	8.6%	intergenic (‑95/‑117)	PP_0710 ← / → ycaC‑I	hypothetical protein/putative hydrolase
RA	826,700	G→C	10.4%	intergenic (‑102/‑110)	PP_0710 ← / → ycaC‑I	hypothetical protein/putative hydrolase
RA	838,003	Δ1 bp	8.6%	intergenic (‑39/+41)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	838,007:1	+C	8.6%	intergenic (‑43/+37)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	838,806	C→T	100%	A298T (GCG→ACG)	prs ←	ribose‑phosphate pyrophosphokinase
RA	857,639	G→C	5.3%	D395E (GAC→GAG) ‡	phr ←	deoxyribodipyrimidine photolyase
RA	857,640	T→G	5.1%	D395A (GAC→GCC) ‡	phr ←	deoxyribodipyrimidine photolyase
RA	858,319	G→C	5.9%	R169G (CGG→GGG)	phr ←	deoxyribodipyrimidine photolyase
RA	858,322	C→G	6.1%	A168P (GCA→CCA)	phr ←	deoxyribodipyrimidine photolyase
RA	864,667	A→T	7.3%	F173Y (TTC→TAC)	uraA ←	uracil permease
RA	864,670	A→T	7.7%	V172E (GTA→GAA)	uraA ←	uracil permease
RA	886,083	G→C	5.3%	W665S (TGG→TCG) ‡	PP_0767 →	LuxR family transcriptional regulator
RA	886,084	G→A	5.3%	W665* (TGG→TGA) ‡	PP_0767 →	LuxR family transcriptional regulator
RA	887,948	C→A	8.8%	R328R (CGG→AGG)	PP_0768 →	TPR domain‑containing response regulator
RA	891,587	C→A	5.5%	intergenic (+40/+40)	yiaD → / ← pta	OmpA/MotB domain‑containing protein/phosphate acetyltransferase
RA	891,588	A→C	5.3%	intergenic (+41/+39)	yiaD → / ← pta	OmpA/MotB domain‑containing protein/phosphate acetyltransferase
RA	891,589	G→T	5.3%	intergenic (+42/+38)	yiaD → / ← pta	OmpA/MotB domain‑containing protein/phosphate acetyltransferase
RA	891,590	T→G	5.3%	intergenic (+43/+37)	yiaD → / ← pta	OmpA/MotB domain‑containing protein/phosphate acetyltransferase
RA	893,369	A→G	6.8%	Y116H (TAC→CAC)	pta ←	phosphate acetyltransferase
RA	900,535	C→G	6.8%	intergenic (+27/+18)	PP_0784 → / ← cysZ	hypothetical protein/sulfate transport protein CysZ
RA	902,152	T→A	6.7%	F181I (TTC→ATC)	trxB →	thioredoxin reductase
RA	907,473	C→A	5.4%	Q246H (CAG→CAT) ‡	yjjV ←	putative hydrolase
RA	907,474	T→C	5.5%	Q246R (CAG→CGG) ‡	yjjV ←	putative hydrolase
RA	907,475	G→A	5.5%	Q246* (CAG→TAG) ‡	yjjV ←	putative hydrolase
RA	907,476	T→G	5.5%	A245A (GCA→GCC)	yjjV ←	putative hydrolase
RA	910,490	A→G	5.5%	K333R (AAG→AGG) ‡	fruB →	PTS fructose transporter subunit EI/HPr/IIA
RA	910,491	G→C	5.6%	K333N (AAG→AAC) ‡	fruB →	PTS fructose transporter subunit EI/HPr/IIA
RA	910,492	C→T	5.6%	L334L (CTG→TTG)	fruB →	PTS fructose transporter subunit EI/HPr/IIA
RA	938,833	A→G	5.5%	G2263G (GGT→GGC)	PP_0806 ←	surface adhesion protein
RA	953,229	A→G	11.8%	H13R (CAC→CGC) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,230	C→T	11.3%	H13H (CAC→CAT) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	954,433	T→C	5.1%	L92P (CTG→CCG)	cyoE →	protoheme IX farnesyltransferase
RA	954,435	C→A	5.1%	L93I (CTC→ATC) ‡	cyoE →	protoheme IX farnesyltransferase
RA	954,436	T→G	5.2%	L93R (CTC→CGC) ‡	cyoE →	protoheme IX farnesyltransferase
RA	955,076	Δ1 bp	10.0%	intergenic (+30/‑283)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,080	T→A	10.4%	intergenic (+34/‑279)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,082:1	+G	10.4%	intergenic (+36/‑277)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,149	A→G	17.5%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	16.6%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	15.8%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	15.9%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	C→T	16.5%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	990,583	A→C	7.8%	D155A (GAC→GCC)	PP_0856 →	lipoprotein
RA	990,589	G→A	6.7%	R157H (CGC→CAC) ‡	PP_0856 →	lipoprotein
RA	990,590	C→G	6.6%	R157R (CGC→CGG) ‡	PP_0856 →	lipoprotein
RA	990,591	C→G	6.6%	L158V (CTG→GTG) ‡	PP_0856 →	lipoprotein
RA	990,592	T→C	6.6%	L158P (CTG→CCG) ‡	PP_0856 →	lipoprotein
RA	990,969	T→G	5.6%	Y284D (TAC→GAC)	PP_0856 →	lipoprotein
RA	991,333	C→A	6.1%	intergenic (+71/‑46)	PP_0856 → / → der	lipoprotein/GTPase Der
RA	991,335	T→G	7.3%	intergenic (+73/‑44)	PP_0856 → / → der	lipoprotein/GTPase Der
RA	996,022	T→A	5.9%	Q525L (CAG→CTG)	PP_0860 ←	sulfite reductase flavoprotein subunit
RA	996,025	C→A	5.6%	W524L (TGG→TTG)	PP_0860 ←	sulfite reductase flavoprotein subunit
RA	996,028	T→G	5.5%	Q523P (CAA→CCA)	PP_0860 ←	sulfite reductase flavoprotein subunit
RA	996,031	T→A	5.2%	Q522L (CAG→CTG)	PP_0860 ←	sulfite reductase flavoprotein subunit
RA	1,010,677	A→T	7.4%	L129Q (CTG→CAG)	PP_0871 ←	glycine betaine/carnitine/choline ABC transporter permease
RA	1,013,228	A→T	14.2%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,234	C→A	15.3%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,235	A→T	14.7%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,241	G→C	15.7%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	19.1%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	20.7%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	22.7%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	25.6%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,017,354	T→A	7.2%	intergenic (‑249/+28)	PP_0876 ← / ← PP_5461	AraC family transcriptional regulator/hypothetical protein
RA	1,017,355	T→A	7.2%	intergenic (‑250/+27)	PP_0876 ← / ← PP_5461	AraC family transcriptional regulator/hypothetical protein
RA	1,017,356	T→A	7.1%	intergenic (‑251/+26)	PP_0876 ← / ← PP_5461	AraC family transcriptional regulator/hypothetical protein
RA	1,033,239	A→G	5.9%	E67G (GAA→GGA)	PP_0890 →	hypothetical protein
RA	1,054,462	A→C	7.6%	M1G (GTG→GGG) †‡	PP_0912 ←	hypothetical protein
RA	1,054,463	C→T	7.5%	M1M (GTG→ATG) †‡	PP_0912 ←	hypothetical protein
RA	1,054,464	A→T	7.2%	intergenic (‑1/+36)	PP_0912 ← / ← PP_0913	hypothetical protein/hypothetical protein
RA	1,054,465	A→G	7.4%	intergenic (‑2/+35)	PP_0912 ← / ← PP_0913	hypothetical protein/hypothetical protein
RA	1,054,466	G→T	6.9%	intergenic (‑3/+34)	PP_0912 ← / ← PP_0913	hypothetical protein/hypothetical protein
RA	1,054,478	G→T	7.2%	intergenic (‑15/+22)	PP_0912 ← / ← PP_0913	hypothetical protein/hypothetical protein
RA	1,058,257	Δ1 bp	6.7%	intergenic (‑186/+34)	PP_0914 ← / ← sodB	GGDEF domain‑containing protein/superoxide dismutase
RA	1,058,261:1	+T	6.5%	intergenic (‑190/+30)	PP_0914 ← / ← sodB	GGDEF domain‑containing protein/superoxide dismutase
RA	1,070,246:1	+G	88.1%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,246:2	+A	88.1%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,260	G→C	10.8%	intergenic (+60/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,263	G→C	10.8%	intergenic (+63/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,075,486	C→G	5.5%	I68M (ATC→ATG)	mreB →	cell wall structural actin‑like protein MreB
RA	1,075,487	C→G	5.5%	R69G (CGT→GGT)	mreB →	cell wall structural actin‑like protein MreB
RA	1,075,492	C→G	5.9%	T70T (ACC→ACG)	mreB →	cell wall structural actin‑like protein MreB
RA	1,075,493	C→G	5.9%	H71D (CAT→GAT)	mreB →	cell wall structural actin‑like protein MreB
RA	1,092,674	C→G	6.9%	V51V (GTG→GTC) ‡	ptsH ←	phosphocarrier protein HPr
RA	1,092,675	A→G	6.9%	V51A (GTG→GCG) ‡	ptsH ←	phosphocarrier protein HPr
RA	1,092,677	C→G	5.8%	A50A (GCG→GCC)	ptsH ←	phosphocarrier protein HPr
RA	1,092,680	C→G	5.7%	M49I (ATG→ATC)	ptsH ←	phosphocarrier protein HPr
RA	1,103,280	C→A	5.3%	D13E (GAC→GAA)	murA →	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	1,120,469	T→A	6.6%	intergenic (‑211/‑91)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,120,470	T→A	6.5%	intergenic (‑212/‑90)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,120,471	T→A	6.6%	intergenic (‑213/‑89)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,124,454:1	+C	12.5%	coding (689/1122 nt)	gcvT‑I ←	aminomethyltransferase
RA	1,124,459	G→C	12.5%	D228E (GAC→GAG)	gcvT‑I ←	aminomethyltransferase
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,148,793	G→T	8.7%	T151K (ACG→AAG)	PP_1007 ←	transmembrane sensor
RA	1,148,796	A→C	9.1%	L150R (CTT→CGT)	PP_1007 ←	transmembrane sensor
RA	1,175,196	C→T	6.6%	L91F (CTC→TTC)	PP_1030 →	hypothetical protein
RA	1,175,201	A→G	5.6%	E92E (GAA→GAG)	PP_1030 →	hypothetical protein
RA	1,178,751	T→A	7.0%	intergenic (+56/+38)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,752	G→T	7.1%	intergenic (+57/+37)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,753	A→C	6.4%	intergenic (+58/+36)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,754	T→A	7.1%	intergenic (+59/+35)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,184,585	G→C	8.8%	intergenic (‑201/‑211)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,588	G→C	8.8%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,619	G→C	5.5%	intergenic (‑235/‑177)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,621	C→T	5.6%	intergenic (‑237/‑175)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,622	G→A	5.6%	intergenic (‑238/‑174)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,625	C→G	5.9%	intergenic (‑241/‑171)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,634:1	+G	5.8%	intergenic (‑250/‑162)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,035	A→G	20.5%	intergenic (+25/+17)	PP_1038 → / ← tatC‑I	hypothetical protein/Sec‑independent protein translocase protein
RA	1,189,036	C→T	18.9%	intergenic (+26/+16)	PP_1038 → / ← tatC‑I	hypothetical protein/Sec‑independent protein translocase protein
RA	1,197,299	T→G	5.2%	S454A (TCG→GCG) ‡	xcpQ →	type II secretion pathway protein XcpQ
RA	1,197,301	G→A	5.5%	S454S (TCG→TCA) ‡	xcpQ →	type II secretion pathway protein XcpQ
RA	1,197,304	T→C	5.2%	I455I (ATT→ATC)	xcpQ →	type II secretion pathway protein XcpQ
RA	1,198,992	G→A	5.3%	G434G (GGG→GGA)	gspE →	protein secretion protein
RA	1,201,864	T→A	6.0%	L90M (TTG→ATG)	xcpW →	type II secretion pathway protein XcpW
RA	1,208,810	G→A	8.4%	S64L (TCG→TTG)	PP_1058 ←	hypothetical protein
RA	1,213,952	C→A	5.2%	A1003S (GCT→TCT)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,213,953	G→T	5.2%	I1002I (ATC→ATA) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,213,954	A→C	5.2%	I1002S (ATC→AGC) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,213,955	T→G	5.3%	I1002L (ATC→CTC) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,084	G→T	6.8%	Y625* (TAC→TAA) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,086	A→G	6.5%	Y625H (TAC→CAC) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,087	G→C	6.6%	D624E (GAC→GAG)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,092	G→C	6.7%	L623V (CTC→GTC)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,095	A→C	6.9%	L622V (TTG→GTG)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,396	G→A	7.5%	S521S (AGC→AGT)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,231,194	C→A	6.9%	V507L (GTG→TTG)	glpD ←	aerobic glycerol‑3‑phosphate dehydrogenase
RA	1,231,195	C→G	6.9%	K506N (AAG→AAC) ‡	glpD ←	aerobic glycerol‑3‑phosphate dehydrogenase
RA	1,231,196	T→G	7.1%	K506T (AAG→ACG) ‡	glpD ←	aerobic glycerol‑3‑phosphate dehydrogenase
RA	1,241,529	G→C	5.4%	intergenic (+21/‑71)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,242,983	G→A	7.7%	intergenic (‑99/‑126)	PP_1083 ← / → tsaA	(2Fe‑2S)‑binding protein/peroxiredoxin
RA	1,242,984	G→C	5.2%	intergenic (‑100/‑125)	PP_1083 ← / → tsaA	(2Fe‑2S)‑binding protein/peroxiredoxin
RA	1,243,069	G→T	6.3%	intergenic (‑185/‑40)	PP_1083 ← / → tsaA	(2Fe‑2S)‑binding protein/peroxiredoxin
RA	1,243,725	G→A	7.2%	intergenic (+14/+85)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,738	T→A	9.5%	intergenic (+27/+72)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,739	T→C	9.6%	intergenic (+28/+71)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,740	C→G	9.3%	intergenic (+29/+70)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,741	G→A	9.5%	intergenic (+30/+69)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,742	T→A	9.2%	intergenic (+31/+68)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,755	T→C	5.5%	intergenic (+44/+55)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,245,412	A→G	7.1%	I39T (ATC→ACC)	pyrC ←	dihydroorotase
RA	1,246,194	C→T	6.3%	F183F (TTC→TTT)	PP_1087 →	OmpA family outer membrane protein
RA	1,248,213	C→A	7.9%	intergenic (+26/+42)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,248,214	T→C	9.5%	intergenic (+27/+41)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,248,217	G→A	6.1%	intergenic (+30/+38)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,248,218	T→G	7.2%	intergenic (+31/+37)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,249,749	A→T	8.7%	intergenic (+22/+49)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,249,751	C→G	8.5%	intergenic (+24/+47)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,249,753	A→T	8.9%	intergenic (+26/+45)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,253,429	G→C	7.7%	intergenic (‑75/+32)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,253,431	A→T	7.4%	intergenic (‑77/+30)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,253,433	G→C	7.3%	intergenic (‑79/+28)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,273,453	G→A	5.1%	A41V (GCC→GTC)	PP_1114 ←	SEC‑C domain‑containing protein
RA	1,275,084	G→C	14.3%	intergenic (‑281/+31)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,275,087	G→C	18.0%	intergenic (‑284/+28)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,288,148	C→T	5.9%	P511S (CCC→TCC)	PP_1125 →	putative Helicase
RA	1,293,255	T→G	5.8%	A286A (GCT→GCG)	PP_1128 →	OmpA family protein
RA	1,294,114	C→T	10.1%	intergenic (+15/+25)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,294,115	A→T	10.1%	intergenic (+16/+24)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,294,116	A→G	8.9%	intergenic (+17/+23)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,317,338	G→C	6.4%	Q252H (CAG→CAC)	PP_1150 →	membrane protein
RA	1,327,121	C→T	55.0%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,334,867	T→C	5.3%	T14T (ACT→ACC)	PP_1160 →	asparaginase family protein
RA	1,340,033	C→G	5.2%	R202G (CGC→GGC)	PP_1164 →	LysR family transcriptional regulator
RA	1,350,501	T→A	5.7%	K11N (AAA→AAT) ‡	PP_1176 ←	hypothetical protein
RA	1,350,502	T→A	5.7%	K11I (AAA→ATA) ‡	PP_1176 ←	hypothetical protein
RA	1,373,817	A→T	7.0%	L46Q (CTG→CAG)	PP_1199 ←	toxin‑antitoxin system HigB‑like toxin
RA	1,373,822	A→G	6.3%	S44S (TCT→TCC) ‡	PP_1199 ←	toxin‑antitoxin system HigB‑like toxin
RA	1,373,823	G→A	6.4%	S44F (TCT→TTT) ‡	PP_1199 ←	toxin‑antitoxin system HigB‑like toxin
RA	1,389,946	C→G	5.8%	A23G (GCC→GGC)	PP_1212 →	hypothetical protein
RA	1,389,951	C→G	5.8%	P25A (CCG→GCG)	PP_1212 →	hypothetical protein
RA	1,400,872	C→A	6.2%	intergenic (+35/‑134)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,874	A→T	6.3%	intergenic (+37/‑132)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,876	T→G	6.9%	intergenic (+39/‑130)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,403,591	T→C	9.3%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,414,811	A→T	6.3%	V28V (GTA→GTT)	dapA‑I →	4‑hydroxy‑tetrahydrodipicolinate synthase
RA	1,416,862	G→A	9.2%	R37Q (CGG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,868	T→A	8.6%	L39Q (CTG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,874	T→C	8.7%	L41P (CTG→CCG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,419,548:1	+C	100%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,428,977	C→G	7.3%	P360A (CCA→GCA)	mqo‑II →	malate:quinone oxidoreductase
RA	1,431,512	C→T	6.3%	intergenic (+128/+24)	PP_1252 → / ← PP_1253	group II intron‑encoding maturase/ArsR family transcriptional regulator
RA	1,435,815	A→T	5.6%	L50Q (CTG→CAG)	PP_1256 ←	alpha‑ketoglutarate semialdehyde dehydrogenase
RA	1,436,591	G→T	5.5%	P158H (CCC→CAC)	PP_1257 ←	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
RA	1,457,918	C→A	9.3%	H93N (CAC→AAC)	PP_1276 →	hypothetical protein
RA	1,471,395	G→T	5.6%	R478R (CGG→AGG)	alg8 ←	glycosyltransferase Alg8
RA	1,471,398	A→C	5.2%	S477A (TCG→GCG)	alg8 ←	glycosyltransferase Alg8
RA	1,484,997	A→G	5.2%	I359V (ATC→GTC)	yhdX →	amino acid ABC transporter permease
RA	1,492,267	T→G	5.0%	intergenic (+28/+67)	cysNC → / ← imm	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein
RA	1,492,269	G→A	5.2%	intergenic (+30/+65)	cysNC → / ← imm	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,506,927	G→A	11.5%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,930	T→C	11.5%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,934	C→T	12.7%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,521,246	T→G	5.9%	F168C (TTC→TGC) ‡	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,521,247	C→G	5.9%	F168L (TTC→TTG) ‡	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,521,248	C→A	5.9%	Q169K (CAG→AAG)	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,525,375	G→A	5.7%	G336D (GGC→GAC)	murC →	UDP‑N‑acetylmuramate‑‑L‑alanine ligase
RA	1,526,580	T→A	5.1%	I256N (ATT→AAT)	ddlB →	D‑alanine‑‑D‑alanine ligase B
RA	1,549,906	A→T	5.4%	E102D (GAA→GAT)	groL →	chaperonin GroEL
RA	1,551,282	G→T	9.0%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,551,285	A→C	8.4%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,580,814	T→G	7.7%	K195Q (AAG→CAG)	ttgB ←	efflux pump membrane protein TtgB
RA	1,580,997	T→C	85.2%	K134E (AAG→GAG)	ttgB ←	efflux pump membrane protein TtgB
RA	1,581,266	G→T	16.6%	A44D (GCC→GAC)	ttgB ←	efflux pump membrane protein TtgB
RA	1,582,773	C→A	6.1%	intergenic (‑219/‑39)	ttgA ← / → ttgR	efflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR
RA	1,582,780	T→A	6.1%	intergenic (‑226/‑32)	ttgA ← / → ttgR	efflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR
RA	1,582,787	T→G	6.4%	intergenic (‑233/‑25)	ttgA ← / → ttgR	efflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR
RA	1,584,487	A→T	5.8%	L176Q (CTG→CAG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,493	A→T	5.5%	L174Q (CTG→CAG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,495	C→G	6.5%	P173P (CCG→CCC)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,591,705	G→T	7.3%	A63A (GCC→GCA)	PP_1395 ←	AraC family transcriptional regulator
RA	1,591,709	A→T	7.5%	L62H (CTT→CAT) ‡	PP_1395 ←	AraC family transcriptional regulator
RA	1,591,710	G→C	9.2%	L62V (CTT→GTT) ‡	PP_1395 ←	AraC family transcriptional regulator
RA	1,591,711	G→C	8.1%	I61M (ATC→ATG) ‡	PP_1395 ←	AraC family transcriptional regulator
RA	1,591,712	A→T	8.2%	I61N (ATC→AAC) ‡	PP_1395 ←	AraC family transcriptional regulator
RA	1,591,716	A→C	8.6%	C60G (TGC→GGC)	PP_1395 ←	AraC family transcriptional regulator
RA	1,591,982	C→A	14.6%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,987	T→G	14.5%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,598,492	G→A	5.5%	A90A (GCC→GCT) ‡	dctB ←	C4‑dicarboxylate transport sensor protein
RA	1,598,493	G→A	5.5%	A90V (GCC→GTC) ‡	dctB ←	C4‑dicarboxylate transport sensor protein
RA	1,598,496	T→C	5.7%	N89S (AAC→AGC) ‡	dctB ←	C4‑dicarboxylate transport sensor protein
RA	1,598,497	T→C	5.7%	N89D (AAC→GAC) ‡	dctB ←	C4‑dicarboxylate transport sensor protein
RA	1,598,831	C→G	6.1%	intergenic (‑70/+61)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,832	T→C	6.1%	intergenic (‑71/+60)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,833	G→A	7.3%	intergenic (‑72/+59)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,834	C→G	5.9%	intergenic (‑73/+58)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,606,500	G→C	7.2%	noncoding (35/74 nt)	PP_t64 ←	tRNA‑Gly
RA	1,606,502	G→C	7.4%	noncoding (33/74 nt)	PP_t64 ←	tRNA‑Gly
RA	1,637,315	T→C	5.7%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,325	A→T	5.7%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,326	A→T	5.7%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,336	G→A	5.9%	intergenic (+45/+21)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,342	A→G	6.1%	intergenic (+51/+15)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,638,987	A→G	6.3%	Y142H (TAC→CAC)	czcR‑III ←	response regulator
RA	1,639,565	A→G	7.3%	intergenic (‑155/‑156)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,575	C→T	9.3%	intergenic (‑165/‑146)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,576	G→T	9.1%	intergenic (‑166/‑145)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,580	G→A	8.3%	intergenic (‑170/‑141)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,581	T→C	8.3%	intergenic (‑171/‑140)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,585	A→C	8.3%	intergenic (‑175/‑136)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,586	A→G	8.7%	intergenic (‑176/‑135)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,654,389	T→C	5.2%	K794E (AAG→GAG)	PP_1449 ←	hypothetical protein
RA	1,681,393	A→T	8.5%	S155C (AGT→TGT)	PP_1476 →	hypothetical protein
RA	1,681,667	A→T	8.4%	E62D (GAA→GAT)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,681,669	C→G	7.9%	A63G (GCC→GGC)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,681,671	A→T	8.2%	I64F (ATC→TTC)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,684,468	G→A	8.0%	A349A (GCG→GCA)	PP_1478 →	xenobiotic reductase
RA	1,684,887	T→A	5.3%	Q79L (CAG→CTG)	PP_1480 ←	hypothetical protein
RA	1,684,893	A→T	5.1%	L77Q (CTG→CAG)	PP_1480 ←	hypothetical protein
RA	1,687,086	C→T	6.3%	D173N (GAC→AAC)	ydcV ←	polyamine ABC transporter permease
RA	1,691,772	T→C	8.6%	intergenic (+39/‑132)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,773	C→G	8.8%	intergenic (+40/‑131)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,783	C→A	10.4%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,786	T→G	11.2%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,796	C→G	7.4%	intergenic (+63/‑108)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,797	G→A	7.5%	intergenic (+64/‑107)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,701,612	G→T	9.3%	intergenic (+57/‑37)	prfB → / → lysS	peptide chain release factor 2/lysine‑‑tRNA ligase
RA	1,701,613	A→T	7.1%	intergenic (+58/‑36)	prfB → / → lysS	peptide chain release factor 2/lysine‑‑tRNA ligase
RA	1,701,614	A→C	7.2%	intergenic (+59/‑35)	prfB → / → lysS	peptide chain release factor 2/lysine‑‑tRNA ligase
RA	1,703,248	A→G	8.3%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	13.6%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	11.2%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,704,636	T→A	5.8%	M1M (TTG→ATG) †‡	PP_1499 →	hypothetical protein
RA	1,704,637	T→A	5.8%	M1* (TTG→TAG) †‡	PP_1499 →	hypothetical protein
RA	1,707,227	G→C	10.1%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,230	G→C	11.4%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,951	T→A	10.9%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,952	T→A	9.8%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,736,646	A→G	5.2%	S332P (TCG→CCG)	dapD ←	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
RA	1,738,598	C→T	5.5%	A199T (GCT→ACT)	PP_1532 ←	putative Phage integrase
RA	1,741,930	C→G	5.8%	intergenic (‑18/+66)	PP_1538 ← / ← PP_1539	hypothetical protein/hypothetical protein
RA	1,741,935	C→G	5.8%	intergenic (‑23/+61)	PP_1538 ← / ← PP_1539	hypothetical protein/hypothetical protein
RA	1,744,888	T→A	6.3%	intergenic (‑14/+327)	PP_1542 ← / ← PP_1543	hypothetical protein/hypothetical protein
RA	1,746,273	A→T	5.3%	S65T (TCA→ACA)	PP_1544 ←	hypothetical protein
RA	1,748,903	A→G	6.1%	intergenic (‑236/‑96)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein
RA	1,751,071:1	+C	8.7%	coding (430/855 nt)	PP_1551 →	replication protein O
RA	1,751,079	T→G	17.3%	P146P (CCT→CCG)	PP_1551 →	replication protein O
RA	1,751,080	T→A	10.9%	S147T (TCG→ACG) ‡	PP_1551 →	replication protein O
RA	1,751,081	C→A	16.5%	S147* (TCG→TAG) ‡	PP_1551 →	replication protein O
RA	1,777,524	C→G	6.9%	intergenic (+258/+34)	PP_5476 → / ← PP_1585	hypothetical protein/antidote protein
RA	1,777,525	C→G	6.9%	intergenic (+259/+33)	PP_5476 → / ← PP_1585	hypothetical protein/antidote protein
RA	1,786,952	C→T	6.9%	F261F (TTC→TTT)	tsf →	elongation factor Ts
RA	1,786,953	A→G	5.6%	K262E (AAA→GAA)	tsf →	elongation factor Ts
RA	1,786,961	C→T	7.5%	G264G (GGC→GGT)	tsf →	elongation factor Ts
RA	1,795,447	T→C	100%	L87P (CTG→CCG)	PP_1600 →	Skp‑like protein
RA	1,806,093	T→C	7.0%	intergenic (+43/‑3)	tilS → / → PP_1609	tRNA lysidine(34) synthetase TilS/hypothetical protein
RA	1,806,099	G→T	7.1%	G2C (GGT→TGT) ‡	PP_1609 →	hypothetical protein
RA	1,806,100	G→T	7.2%	G2V (GGT→GTT) ‡	PP_1609 →	hypothetical protein
RA	1,806,104	C→G	7.1%	S3S (TCC→TCG)	PP_1609 →	hypothetical protein
RA	1,806,105	G→C	7.2%	A4P (GCG→CCG) ‡	PP_1609 →	hypothetical protein
RA	1,806,106	C→G	7.1%	A4G (GCG→GGG) ‡	PP_1609 →	hypothetical protein
RA	1,806,110	A→C	7.2%	K5N (AAA→AAC)	PP_1609 →	hypothetical protein
RA	1,806,111	A→C	7.2%	T6P (ACA→CCA)	PP_1609 →	hypothetical protein
RA	1,806,117	G→A	7.4%	E8K (GAG→AAG)	PP_1609 →	hypothetical protein
RA	1,808,839	A→G	7.0%	intergenic (+44/‑111)	kdsA‑I → / → eno	2‑dehydro‑3‑deoxyphosphooctonate aldolase/enolase
RA	1,808,840	G→A	6.9%	intergenic (+45/‑110)	kdsA‑I → / → eno	2‑dehydro‑3‑deoxyphosphooctonate aldolase/enolase
RA	1,808,841	T→C	6.9%	intergenic (+46/‑109)	kdsA‑I → / → eno	2‑dehydro‑3‑deoxyphosphooctonate aldolase/enolase
RA	1,808,842	C→T	6.9%	intergenic (+47/‑108)	kdsA‑I → / → eno	2‑dehydro‑3‑deoxyphosphooctonate aldolase/enolase
RA	1,823,005	T→A	6.0%	H750L (CAC→CTC)	mutS ←	DNA mismatch repair protein MutS
RA	1,859,101	C→A	5.6%	intergenic (+21/+80)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,102	G→A	5.6%	intergenic (+22/+79)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,108	C→G	5.6%	intergenic (+28/+73)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,114	A→T	7.9%	intergenic (+34/+67)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,120	C→G	8.1%	intergenic (+40/+61)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,126	T→C	6.3%	intergenic (+46/+55)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,127	T→G	6.3%	intergenic (+47/+54)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,866,099	Δ1 bp	5.4%	coding (604/645 nt)	PP_1669 →	NLP/P60 family protein
RA	1,866,103:1	+G	5.4%	coding (608/645 nt)	PP_1669 →	NLP/P60 family protein
RA	1,875,613	A→G	6.8%	K113E (AAA→GAA)	cobS →	adenosylcobinamide‑GDP ribazoletransferase
RA	1,884,398	G→T	7.5%	intergenic (‑731/‑220)	PP_1691 ← / → PP_1692	hypothetical protein/hypothetical protein
RA	1,884,399	A→T	5.9%	intergenic (‑732/‑219)	PP_1691 ← / → PP_1692	hypothetical protein/hypothetical protein
RA	1,884,400	A→C	5.6%	intergenic (‑733/‑218)	PP_1691 ← / → PP_1692	hypothetical protein/hypothetical protein
RA	1,892,526	C→G	6.4%	intergenic (+36/‑59)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,892,527	T→C	7.5%	intergenic (+37/‑58)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,892,528	G→A	6.5%	intergenic (+38/‑57)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,892,529	C→G	6.6%	intergenic (+39/‑56)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,906,759	T→A	8.7%	intergenic (+99/+29)	nirD → / ← PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	1,906,760	T→A	9.4%	intergenic (+100/+28)	nirD → / ← PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	1,909,118	G→A	5.9%	Q45* (CAG→TAG)	PP_1709 ←	fumarylacetoacetate hydrolase family protein
RA	1,909,125	C→G	6.3%	A42A (GCG→GCC)	PP_1709 ←	fumarylacetoacetate hydrolase family protein
RA	1,909,132	T→C	6.0%	Y40C (TAC→TGC)	PP_1709 ←	fumarylacetoacetate hydrolase family protein
RA	1,921,549	T→A	11.6%	intergenic (+24/+37)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,921,550	T→A	11.6%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,926,513	T→G	6.3%	D118A (GAC→GCC) ‡	PP_1726 ←	ABC transporter substrate‑binding protein
RA	1,926,514	C→A	6.8%	D118Y (GAC→TAC) ‡	PP_1726 ←	ABC transporter substrate‑binding protein
RA	1,926,941	T→A	5.8%	intergenic (‑76/‑252)	PP_1726 ← / → PP_1727	ABC transporter substrate‑binding protein/GntR family transcriptional regulator
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,933,664	G→T	5.5%	R30R (CGC→CGA)	minD ←	MinC‑MinD‑MinE system ATPase
RA	1,933,669	G→C	5.7%	L29V (CTG→GTG)	minD ←	MinC‑MinD‑MinE system ATPase
RA	1,933,674	A→C	8.4%	L27R (CTC→CGC)	minD ←	MinC‑MinD‑MinE system ATPase
RA	1,942,372	G→A	6.9%	intergenic (+50/‑155)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,946,533	C→T	7.1%	intergenic (‑62/+22)	PP_1747 ← / ← PP_1748	hypothetical protein/hypothetical protein
RA	1,946,536	T→A	7.4%	intergenic (‑65/+19)	PP_1747 ← / ← PP_1748	hypothetical protein/hypothetical protein
RA	1,946,537	T→A	7.3%	intergenic (‑66/+18)	PP_1747 ← / ← PP_1748	hypothetical protein/hypothetical protein
RA	1,946,538	T→A	7.3%	intergenic (‑67/+17)	PP_1747 ← / ← PP_1748	hypothetical protein/hypothetical protein
RA	1,946,541	A→G	7.1%	intergenic (‑70/+14)	PP_1747 ← / ← PP_1748	hypothetical protein/hypothetical protein
RA	1,948,173	C→G	7.1%	R494R (CGG→CGC)	PP_1749 ←	acetyltransferase
RA	1,953,403	G→A	7.3%	R46R (CGC→CGT) ‡	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,953,405	G→C	7.3%	R46G (CGC→GGC) ‡	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,953,408	T→C	7.3%	T45A (ACC→GCC)	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,967,646	C→G	6.3%	G115A (GGC→GCC) ‡	yciK ←	putative oxidoreductase
RA	1,967,647	C→G	6.3%	G115R (GGC→CGC) ‡	yciK ←	putative oxidoreductase
RA	1,977,236	C→G	5.4%	R300R (CGC→CGG)	PP_1770 →	3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	1,978,708	C→G	7.1%	F45L (TTC→TTG)	cmk →	cytidylate kinase
RA	1,979,658	G→A	7.5%	A110T (GCC→ACC)	rpsA →	30S ribosomal protein S1
RA	1,983,083	G→A	7.2%	A345A (GCG→GCA)	PP_1775 →	metallo‑beta‑lactamase family protein
RA	1,991,155	T→G	5.5%	L802* (TTA→TGA)	PP_1780 →	mannosyltransferase
RA	1,991,163	G→T	6.7%	A805S (GCC→TCC) ‡	PP_1780 →	mannosyltransferase
RA	1,991,164	C→G	7.2%	A805G (GCC→GGC) ‡	PP_1780 →	mannosyltransferase
RA	1,991,165	C→G	8.4%	A805A (GCC→GCG) ‡	PP_1780 →	mannosyltransferase
RA	1,991,166	A→C	7.4%	N806H (AAC→CAC)	PP_1780 →	mannosyltransferase
RA	1,991,174	C→A	6.0%	L808L (CTC→CTA)	PP_1780 →	mannosyltransferase
RA	1,993,602	G→T	7.3%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,603	C→G	7.8%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,604	A→C	8.8%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,995,952	G→T	7.1%	intergenic (‑198/+87)	PP_mr26 ← / ← rfbC	C4 ncRNA/dTDP‑4‑dehydrorhamnose 3,5‑epimerase
RA	1,995,955	A→T	7.0%	intergenic (‑201/+84)	PP_mr26 ← / ← rfbC	C4 ncRNA/dTDP‑4‑dehydrorhamnose 3,5‑epimerase
RA	1,995,956	A→C	7.0%	intergenic (‑202/+83)	PP_mr26 ← / ← rfbC	C4 ncRNA/dTDP‑4‑dehydrorhamnose 3,5‑epimerase
RA	1,995,958	A→C	8.3%	intergenic (‑204/+81)	PP_mr26 ← / ← rfbC	C4 ncRNA/dTDP‑4‑dehydrorhamnose 3,5‑epimerase
RA	2,025,706	Δ1 bp	6.7%	coding (706/1110 nt)	wbpZ →	glycosyl transferase
RA	2,025,713	A→C	8.3%	Q238P (CAG→CCG) ‡	wbpZ →	glycosyl transferase
RA	2,025,714	G→T	8.3%	Q238H (CAG→CAT) ‡	wbpZ →	glycosyl transferase
RA	2,025,719:1	+T	8.6%	coding (719/1110 nt)	wbpZ →	glycosyl transferase
RA	2,029,411	G→T	100%	G384V (GGG→GTG)	wbpM →	polysaccharide biosynthesis protein
RA	2,063,185	C→G	7.9%	intergenic (+42/‑165)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,192	C→A	11.5%	intergenic (+49/‑158)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,193	A→C	12.8%	intergenic (+50/‑157)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,194	T→C	11.5%	intergenic (+51/‑156)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,201	G→A	11.6%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,205	T→C	13.6%	intergenic (+62/‑145)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,208	G→A	13.3%	intergenic (+65/‑142)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,212	T→C	15.3%	intergenic (+69/‑138)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,219	G→A	9.1%	intergenic (+76/‑131)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,220	G→T	9.1%	intergenic (+77/‑130)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,221	T→G	8.7%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,228	C→G	9.4%	intergenic (+85/‑122)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,067,452	G→C	5.5%	P202A (CCG→GCG)	plsC ←	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	2,068,151	A→T	10.9%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,068,152	A→T	10.9%	intergenic (‑97/+24)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,073,373	A→C	11.2%	L12R (CTG→CGG) ‡	PP_1847 ←	TonB‑dependent ferric siderophore receptor
RA	2,073,374	G→T	9.1%	L12M (CTG→ATG) ‡	PP_1847 ←	TonB‑dependent ferric siderophore receptor
RA	2,087,316	C→A	5.7%	intergenic (+129/+789)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,323	Δ1 bp	5.6%	intergenic (+136/+782)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,333	C→G	9.2%	intergenic (+146/+772)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,334	C→G	9.1%	intergenic (+147/+771)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,092,380	G→A	7.3%	intergenic (+26/+65)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,382	T→C	7.7%	intergenic (+28/+63)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,385	G→A	7.7%	intergenic (+31/+60)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,387	T→C	7.9%	intergenic (+33/+58)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,098,218	A→C	5.8%	L558V (TTG→GTG)	PP_1875 ←	two‑component system sensor histidine kinase/response regulator
RA	2,143,479	A→T	5.2%	T87S (ACC→TCC)	PP_1899 →	ExbD/TolR family protein
RA	2,143,484	G→C	5.2%	L88L (CTG→CTC)	PP_1899 →	ExbD/TolR family protein
RA	2,143,487	C→G	5.1%	S89R (AGC→AGG)	PP_1899 →	ExbD/TolR family protein
RA	2,147,208	T→G	10.4%	intergenic (+81/+36)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,147,209	T→C	10.4%	intergenic (+82/+35)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,147,210	G→A	10.2%	intergenic (+83/+34)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,147,211	C→A	11.2%	intergenic (+84/+33)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,154,403	G→A	7.5%	S123S (AGC→AGT)	PP_1909 ←	septum formation protein
RA	2,160,917	T→G	9.4%	C219G (TGC→GGC) ‡	pabC →	4‑amino‑4‑deoxychorismate lyase
RA	2,160,918	G→C	9.4%	C219S (TGC→TCC) ‡	pabC →	4‑amino‑4‑deoxychorismate lyase
RA	2,160,919	C→A	9.8%	C219* (TGC→TGA) ‡	pabC →	4‑amino‑4‑deoxychorismate lyase
RA	2,210,520	C→T	9.5%	F255F (TTC→TTT)	PP_1953 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,215,832	G→T	8.2%	intergenic (+646/‑298)	PP_1957 → / → PP_5493	Pdr/VanB family oxidoreductase/hypothetical protein
RA	2,215,833	A→T	8.2%	intergenic (+647/‑297)	PP_1957 → / → PP_5493	Pdr/VanB family oxidoreductase/hypothetical protein
RA	2,215,834	A→C	8.1%	intergenic (+648/‑296)	PP_1957 → / → PP_5493	Pdr/VanB family oxidoreductase/hypothetical protein
RA	2,224,401	G→T	6.8%	A49E (GCA→GAA)	PP_1962 ←	site‑specific recombinase
RA	2,244,390	T→C	8.2%	L141P (CTG→CCG)	PP_1980 →	hypothetical protein
RA	2,244,395	G→A	8.0%	G143S (GGC→AGC)	PP_1980 →	hypothetical protein
RA	2,244,401	T→G	6.3%	*145G (TGA→GGA)	PP_1980 →	hypothetical protein
RA	2,252,647	T→A	8.2%	L183Q (CTG→CAG)	leuD →	3‑isopropylmalate dehydratase small subunit
RA	2,252,650	A→C	7.7%	D184A (GAC→GCC)	leuD →	3‑isopropylmalate dehydratase small subunit
RA	2,252,659	G→T	6.5%	G187V (GGC→GTC)	leuD →	3‑isopropylmalate dehydratase small subunit
RA	2,252,662	T→A	6.5%	L188Q (CTG→CAG)	leuD →	3‑isopropylmalate dehydratase small subunit
RA	2,256,334	C→T	6.2%	intergenic (+394/‑310)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,260,746	G→C	6.4%	G445A (GGC→GCC)	fimV →	motility protein FimV
RA	2,260,749	T→C	5.9%	V446A (GTC→GCC)	fimV →	motility protein FimV
RA	2,274,770	Δ1 bp	6.5%	coding (720/1119 nt)	PP_2005 ←	hypothetical protein
RA	2,282,737	T→G	17.8%	intergenic (‑129/+100)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,770	T→G	32.4%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,774	G→C	25.7%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,775	G→C	25.7%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,779	C→A	32.7%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,295,820	C→G	8.5%	intergenic (+66/+67)	PP_5496 → / ← PP_2023	hypothetical protein/glutathione S‑transferase family protein
RA	2,295,827	G→A	12.7%	intergenic (+73/+60)	PP_5496 → / ← PP_2023	hypothetical protein/glutathione S‑transferase family protein
RA	2,295,833	C→T	8.3%	intergenic (+79/+54)	PP_5496 → / ← PP_2023	hypothetical protein/glutathione S‑transferase family protein
RA	2,322,253	C→A	6.0%	L267I (CTC→ATC)	PP_2042 →	hypothetical protein
RA	2,336,497	C→T	8.3%	intergenic (‑41/+39)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,499	A→G	8.1%	intergenic (‑43/+37)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,340,703	A→C	9.3%	intergenic (+37/‑78)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,340,707	G→A	8.8%	intergenic (+41/‑74)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,340,708	T→A	8.3%	intergenic (+42/‑73)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,340,709	T→C	8.9%	intergenic (+43/‑72)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,351,764	T→G	6.2%	R501R (AGG→CGG)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,372,082	T→C	10.2%	intergenic (+34/+78)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,083	G→A	9.4%	intergenic (+35/+77)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,084	A→C	12.9%	intergenic (+36/+76)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,377,012	G→T	5.4%	G57C (GGC→TGC)	PP_2084 →	ribonuclease activity regulator
RA	2,379,362	G→C	5.5%	G214G (GGG→GGC)	cmpX →	protein CmpX
RA	2,385,793	Δ1 bp	6.9%	coding (85/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,385,797:1	+A	7.1%	coding (81/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,396,427	C→G	8.3%	R1077P (CGC→CCC) ‡	PP_2100 ←	two‑component system sensor protein
RA	2,396,428	G→C	8.9%	R1077G (CGC→GGC) ‡	PP_2100 ←	two‑component system sensor protein
RA	2,416,441	A→G	5.4%	S373G (AGT→GGT)	pdxB →	erythronate‑4‑phosphate dehydrogenase
RA	2,420,598	Δ1 bp	8.7%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,420,602:1	+T	8.6%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,444,419	G→T	5.3%	L157L (CTC→CTA) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,420	A→C	5.3%	L157R (CTC→CGC) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,424	G→T	5.5%	R156S (CGC→AGC)	sulA ←	cell division inhibitor SulA
RA	2,445,358	G→C	9.6%	R52G (CGC→GGC)	lexA‑I ←	transcriptional repressor
RA	2,445,359	G→C	10.1%	A51A (GCC→GCG)	lexA‑I ←	transcriptional repressor
RA	2,460,377	G→A	6.0%	R143C (CGC→TGC)	PP_2153 ←	hypothetical protein
RA	2,463,701	C→T	7.0%	A233V (GCC→GTC)	lolE →	lipoprotein releasing system permease
RA	2,469,842	T→C	7.0%	intergenic (+11/+24)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,844	G→A	7.7%	intergenic (+13/+22)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,851	A→T	7.8%	intergenic (+20/+15)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,852	A→T	7.8%	intergenic (+21/+14)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,853	A→T	7.8%	intergenic (+22/+13)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,860	T→C	9.9%	intergenic (+29/+6)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,862	G→A	9.5%	intergenic (+31/+4)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,479,131	G→A	6.1%	intergenic (+384/+61)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,481,275	C→A	6.1%	L24L (CTG→CTT) ‡	PP_2175 ←	3‑oxoacyl‑ACP reductase
RA	2,481,276	A→C	6.1%	L24R (CTG→CGG) ‡	PP_2175 ←	3‑oxoacyl‑ACP reductase
RA	2,481,283	G→T	6.2%	R22R (CGG→AGG)	PP_2175 ←	3‑oxoacyl‑ACP reductase
RA	2,482,504	T→A	5.4%	intergenic (‑129/‑49)	PP_2176 ← / → PP_2177	transcriptional regulator, LysR family/transcriptional regulator
RA	2,482,511	T→A	5.5%	intergenic (‑136/‑42)	PP_2176 ← / → PP_2177	transcriptional regulator, LysR family/transcriptional regulator
RA	2,483,939	G→A	6.8%	V269I (GTC→ATC)	puuA‑I →	glutamate‑putrescine ligase
RA	2,486,181	C→G	5.8%	A258G (GCC→GGC)	spuC‑I →	polyamine:pyruvate transaminase
RA	2,486,810	A→G	6.2%	intergenic (+43/‑141)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,486,819	C→G	6.0%	intergenic (+52/‑132)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,486,820	T→C	6.1%	intergenic (+53/‑131)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,486,821	G→A	6.1%	intergenic (+54/‑130)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,486,822	C→G	6.1%	intergenic (+55/‑129)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,486,831	C→T	6.0%	intergenic (+64/‑120)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,490,340	Δ1 bp	5.1%	coding (1337/1578 nt)	PP_2184 →	formate dehydrogenase subunit beta
RA	2,500,464	T→A	5.2%	F789I (TTC→ATC)	PP_2193 →	ferric siderophore receptor
RA	2,500,526	T→C	5.5%	Y809Y (TAT→TAC)	PP_2193 →	ferric siderophore receptor
RA	2,508,778	A→T	6.6%	S113T (TCG→ACG)	PP_2203 ←	hypothetical protein
RA	2,508,790	T→C	6.3%	M109V (ATG→GTG)	PP_2203 ←	hypothetical protein
RA	2,527,616	G→A	7.2%	A220T (GCC→ACC)	acd →	acyl‑CoA dehydrogenase
RA	2,529,000	G→C	10.4%	intergenic (+127/‑280)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,529,001	G→C	10.5%	intergenic (+128/‑279)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,540,809	T→A	11.8%	intergenic (+22/+27)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,810	G→C	12.2%	intergenic (+23/+26)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,811	T→A	12.2%	intergenic (+24/+25)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,546,823	T→C	8.1%	intergenic (+22/+18)	PP_2238 → / ← PP_5504	metallopeptidase/hypothetical protein
RA	2,573,593	T→G	8.8%	C117G (TGC→GGC) ‡	PP_2257 →	aerotaxis receptor
RA	2,573,595	C→G	8.6%	C117W (TGC→TGG) ‡	PP_2257 →	aerotaxis receptor
RA	2,573,597	C→A	8.6%	P118H (CCT→CAT)	PP_2257 →	aerotaxis receptor
RA	2,650,088	C→A	5.4%	intergenic (+27/+107)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,650,091	T→A	5.3%	intergenic (+30/+104)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,650,094	T→G	5.5%	intergenic (+33/+101)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,650,985	A→G	6.0%	Q61R (CAG→CGG)	PP_2323 →	hypothetical protein
RA	2,650,987	G→C	6.2%	A62P (GCC→CCC) ‡	PP_2323 →	hypothetical protein
RA	2,650,989	C→T	6.3%	A62A (GCC→GCT) ‡	PP_2323 →	hypothetical protein
RA	2,657,803	A→C	7.5%	intergenic (‑192/+17)	pabB ← / ← PP_2330	aminodeoxychorismate synthase/para‑aminobenzoate synthase multi‑enzyme complex/hypothetical protein
RA	2,657,804	A→T	7.8%	intergenic (‑193/+16)	pabB ← / ← PP_2330	aminodeoxychorismate synthase/para‑aminobenzoate synthase multi‑enzyme complex/hypothetical protein
RA	2,657,805	G→T	8.9%	intergenic (‑194/+15)	pabB ← / ← PP_2330	aminodeoxychorismate synthase/para‑aminobenzoate synthase multi‑enzyme complex/hypothetical protein
RA	2,666,745	A→T	8.9%	intergenic (+19/‑47)	acnA‑II → / → prpF	aconitate hydratase/aconitate isomerase
RA	2,666,746	A→T	8.9%	intergenic (+20/‑46)	acnA‑II → / → prpF	aconitate hydratase/aconitate isomerase
RA	2,666,747	A→T	8.9%	intergenic (+21/‑45)	acnA‑II → / → prpF	aconitate hydratase/aconitate isomerase
RA	2,669,671	T→G	5.5%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,669,674	C→A	5.8%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,673,177	A→C	12.3%	D164A (GAT→GCT)	PP_2340 →	hypothetical protein
RA	2,673,182	A→C	12.3%	M166L (ATG→CTG) ‡	PP_2340 →	hypothetical protein
RA	2,673,183	T→A	12.4%	M166K (ATG→AAG) ‡	PP_2340 →	hypothetical protein
RA	2,673,184	G→T	12.6%	M166I (ATG→ATT) ‡	PP_2340 →	hypothetical protein
RA	2,673,189	G→T	9.9%	S168I (AGC→ATC)	PP_2340 →	hypothetical protein
RA	2,674,831	A→C	7.4%	intergenic (+82/+224)	PP_2343 → / ← PP_2344	hypothetical protein/hypothetical protein
RA	2,700,158	G→A	8.1%	A118V (GCT→GTT)	fsr‑II ←	fosmidomycin efflux system
RA	2,732,333	C→T	6.1%	A557V (GCC→GTC)	polB →	DNA polymerase II
RA	2,741,748	C→A	6.5%	P1376Q (CCA→CAA)	PP_2395 →	leucine‑rich repeat‑containing protein
RA	2,741,751	T→G	6.3%	L1377W (TTG→TGG)	PP_2395 →	leucine‑rich repeat‑containing protein
RA	2,743,756	G→A	6.5%	V41M (GTG→ATG) ‡	PP_2398 →	hypothetical protein
RA	2,743,758	G→A	8.8%	V41V (GTG→GTA) ‡	PP_2398 →	hypothetical protein
RA	2,743,763	G→C	7.0%	G43A (GGC→GCC)	PP_2398 →	hypothetical protein
RA	2,743,768	T→C	7.0%	Y45H (TAT→CAT) ‡	PP_2398 →	hypothetical protein
RA	2,743,770	T→C	7.1%	Y45Y (TAT→TAC) ‡	PP_2398 →	hypothetical protein
RA	2,750,020	A→T	5.4%	F157Y (TTC→TAC)	PP_2406 ←	quinate/shikimate dehydrogenase
RA	2,755,080:1	+C	5.7%	coding (1406/3147 nt)	czcA‑II →	cation efflux system protein
RA	2,755,091	Δ1 bp	5.6%	coding (1417/3147 nt)	czcA‑II →	cation efflux system protein
RA	2,756,836	A→C	9.6%	intergenic (+15/+18)	czcA‑II → / ← PP_2411	cation efflux system protein/MFS transporter
RA	2,756,837	A→T	9.6%	intergenic (+16/+17)	czcA‑II → / ← PP_2411	cation efflux system protein/MFS transporter
RA	2,756,838	G→T	9.8%	intergenic (+17/+16)	czcA‑II → / ← PP_2411	cation efflux system protein/MFS transporter
RA	2,759,762	A→C	6.6%	L394R (CTG→CGG)	PP_2413 ←	GGDEF domain‑containing protein
RA	2,759,765	G→T	7.0%	P393Q (CCG→CAG)	PP_2413 ←	GGDEF domain‑containing protein
RA	2,759,768	T→C	7.0%	D392G (GAT→GGT)	PP_2413 ←	GGDEF domain‑containing protein
RA	2,759,772	T→C	7.0%	T391A (ACC→GCC)	PP_2413 ←	GGDEF domain‑containing protein
RA	2,774,751	A→T	5.1%	L254Q (CTG→CAG)	PP_5521 ←	hypothetical protein
RA	2,780,240	C→T	7.2%	A5V (GCC→GTC)	PP_2433 →	hypothetical protein
RA	2,787,623	G→A	9.8%	intergenic (+70/‑55)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,629	C→G	9.7%	intergenic (+76/‑49)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,630	C→G	9.4%	intergenic (+77/‑48)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,793,752	G→T	19.5%	intergenic (+61/+66)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,755	A→C	17.6%	intergenic (+64/+63)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,756	C→A	16.9%	intergenic (+65/+62)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,757	T→G	17.1%	intergenic (+66/+61)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,758	G→T	16.2%	intergenic (+67/+60)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,761	A→C	16.3%	intergenic (+70/+57)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,796,820	C→G	5.6%	intergenic (+4/‑128)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,821	G→C	6.6%	intergenic (+5/‑127)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,836	G→T	9.9%	intergenic (+20/‑112)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,837	A→T	9.7%	intergenic (+21/‑111)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,838	A→T	9.4%	intergenic (+22/‑110)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,839	A→C	9.5%	intergenic (+23/‑109)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,797,362	A→G	8.4%	K139E (AAG→GAG)	PP_2449 →	hypothetical protein
RA	2,797,367	C→G	8.6%	G140G (GGC→GGG)	PP_2449 →	hypothetical protein
RA	2,797,370	C→G	8.8%	I141M (ATC→ATG)	PP_2449 →	hypothetical protein
RA	2,801,849	C→T	6.0%	A78V (GCC→GTC)	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,802,568	A→T	7.7%	S318C (AGC→TGC)	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,805,576	G→A	7.8%	L117L (CTG→CTA)	rbsK →	ribokinase
RA	2,812,731	T→C	6.0%	intergenic (+25/‑85)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,822,912	T→C	5.5%	V162A (GTC→GCC)	curA →	NADPH‑dependent curcumin/dihydrocurcumin reductase
RA	2,862,971	C→T	9.0%	Q11* (CAA→TAA)	gllR →	HTH‑type transcriptional regulator GalR
RA	2,873,637	T→C	8.0%	I139I (ATT→ATC)	cigR →	membrane protein
RA	2,873,639	T→C	8.0%	L140P (CTG→CCG)	cigR →	membrane protein
RA	2,873,647	G→A	8.3%	V143M (GTG→ATG) ‡	cigR →	membrane protein
RA	2,873,648	T→C	8.3%	V143A (GTG→GCG) ‡	cigR →	membrane protein
RA	2,885,724	A→T	9.3%	L52Q (CTG→CAG)	PP_2541 ←	transcriptional factor‑like protein
RA	2,885,730	C→A	10.0%	R50L (CGC→CTC)	PP_2541 ←	transcriptional factor‑like protein
RA	2,891,173	G→C	9.5%	K171N (AAG→AAC)	tam →	trans‑aconitate methyltransferase
RA	2,896,803	G→A	6.4%	R41Q (CGG→CAG)	PP_2551 →	LysR family transcriptional regulator
RA	2,896,806	A→T	6.3%	Q42L (CAG→CTG)	PP_2551 →	LysR family transcriptional regulator
RA	2,896,809	T→C	6.3%	L43P (CTG→CCG)	PP_2551 →	LysR family transcriptional regulator
RA	2,919,018	G→A	7.2%	A2680T (GCT→ACT)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,951,334	G→C	9.4%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	7.7%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	8.1%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	11.9%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,955,570	G→C	7.3%	G265R (GGC→CGC) ‡	PP_2587 →	LuxR family transcriptional regulator
RA	2,955,571	G→A	7.2%	G265D (GGC→GAC) ‡	PP_2587 →	LuxR family transcriptional regulator
RA	2,955,574	T→C	7.3%	V266A (GTG→GCG)	PP_2587 →	LuxR family transcriptional regulator
RA	2,984,778	T→A	8.3%	N209I (AAC→ATC)	PP_2611 ←	membrane protein
RA	2,986,195	T→A	8.5%	K735M (AAG→ATG)	PP_2612 ←	membrane protein
RA	2,991,527	A→C	7.7%	intergenic (‑48/+27)	vgrG‑I ← / ← hcpC‑I	type VI secretion system protein/hemolysin‑coregulated protein
RA	2,991,528	T→A	7.7%	intergenic (‑49/+26)	vgrG‑I ← / ← hcpC‑I	type VI secretion system protein/hemolysin‑coregulated protein
RA	2,991,529	G→T	7.8%	intergenic (‑50/+25)	vgrG‑I ← / ← hcpC‑I	type VI secretion system protein/hemolysin‑coregulated protein
RA	2,991,533	T→C	7.7%	intergenic (‑54/+21)	vgrG‑I ← / ← hcpC‑I	type VI secretion system protein/hemolysin‑coregulated protein
RA	2,995,667	C→T	7.0%	R55H (CGC→CAC)	PP_2619 ←	FHA domain‑containing protein
RA	3,000,764	G→T	6.4%	P78T (CCG→ACG)	PP_2624 ←	hypothetical protein
RA	3,000,765	T→G	6.2%	V77V (GTA→GTC)	PP_2624 ←	hypothetical protein
RA	3,000,768	C→G	6.2%	T76T (ACG→ACC)	PP_2624 ←	hypothetical protein
RA	3,000,771	C→A	6.6%	V75V (GTG→GTT) ‡	PP_2624 ←	hypothetical protein
RA	3,000,772	A→C	6.6%	V75G (GTG→GGG) ‡	PP_2624 ←	hypothetical protein
RA	3,000,840	A→T	7.1%	R52R (CGT→CGA)	PP_2624 ←	hypothetical protein
RA	3,001,815	C→G	9.3%	A180G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,001,821	G→A	9.2%	R182Q (CGG→CAG)	PP_2625 →	hypothetical protein
RA	3,001,824	G→C	12.1%	G183A (GGC→GCC)	PP_2625 →	hypothetical protein
RA	3,001,827	T→C	13.8%	L184P (CTG→CCG)	PP_2625 →	hypothetical protein
RA	3,001,833	C→G	9.8%	A186G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,030,413	C→G	7.5%	intergenic (+413/‑281)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,417	G→C	7.6%	intergenic (+417/‑277)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,420	G→C	7.6%	intergenic (+420/‑274)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,515	C→A	5.5%	intergenic (+515/‑179)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,517	T→C	5.6%	intergenic (+517/‑177)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,520	T→G	5.6%	intergenic (+520/‑174)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,031,089	C→G	7.7%	I132M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,095	C→G	7.7%	I134M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,032,940	C→T	7.7%	I749I (ATC→ATT)	mgtA →	ATP‑dependent magnesium transporter
RA	3,033,537	C→G	8.4%	A26A (GCC→GCG)	PP_2646 →	hypothetical protein
RA	3,048,605	A→C	12.0%	intergenic (+60/‑236)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,055,557	C→T	10.5%	R23H (CGT→CAT)	PP_2667 ←	ABC transporter permease
RA	3,061,260	T→C	7.0%	A80A (GCA→GCG)	PP_2673 ←	pentapeptide repeat‑containing protein
RA	3,067,110	G→A	8.1%	G50D (GGC→GAC)	qedH‑II →	quinoprotein ethanol dehydrogenase
RA	3,070,479	G→A	9.2%	intergenic (+47/‑307)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,076,092	A→G	9.8%	intergenic (‑40/+34)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,076,094	T→G	9.8%	intergenic (‑42/+32)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,076,095	C→A	10.3%	intergenic (‑43/+31)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,076,097	C→T	10.7%	intergenic (‑45/+29)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,148,546	G→A	8.5%	A162T (GCC→ACC)	msuE →	FMN reductase
RA	3,189,278	G→C	8.9%	L458V (CTG→GTG)	PP_2799 ←	class III aminotransferase
RA	3,189,279	G→C	8.8%	H457Q (CAC→CAG)	PP_2799 ←	class III aminotransferase
RA	3,215,265	A→G	9.8%	M394V (ATG→GTG) ‡	mexD →	multidrug RND transporter MexD
RA	3,215,267	G→C	9.8%	M394I (ATG→ATC) ‡	mexD →	multidrug RND transporter MexD
RA	3,215,269	C→T	9.6%	T395I (ACC→ATC)	mexD →	multidrug RND transporter MexD
RA	3,233,280	A→G	9.1%	L156L (CTA→CTG)	GbpR →	galactose‑binding protein regulator
RA	3,241,918	C→T	7.0%	V538V (GTC→GTT)	PP_2838 →	hypothetical protein
RA	3,270,389	C→T	9.1%	G566S (GGT→AGT)	PP_2869 ←	FMN‑binding oxidoreductase
RA	3,283,902	A→G	8.1%	L108P (CTG→CCG)	PP_2885 ←	transporter
RA	3,326,411	G→A	8.5%	V388V (GTG→GTA)	mqo‑III →	malate:quinone oxidoreductase
RA	3,344,346	C→G	6.5%	Q261H (CAG→CAC)	PP_2941 ←	hypothetical protein
RA	3,378,046	T→C	6.1%	F32S (TTC→TCC)	PP_2978 →	hypothetical protein
RA	3,380,576	C→T	5.6%	A83V (GCG→GTG)	tnpT‑I →	cointegrate resolution protein T
RA	3,391,520	T→C	8.2%	W244R (TGG→CGG) ‡	PP_2994 →	FMN‑binding oxidoreductase
RA	3,391,521	G→C	9.2%	W244S (TGG→TCG) ‡	PP_2994 →	FMN‑binding oxidoreductase
RA	3,391,522	G→A	8.3%	W244* (TGG→TGA) ‡	PP_2994 →	FMN‑binding oxidoreductase
RA	3,397,589	T→G	6.5%	F24V (TTC→GTC) ‡	PP_3002 →	shikimate dehydrogenase‑like protein
RA	3,397,590	T→G	6.4%	F24C (TTC→TGC) ‡	PP_3002 →	shikimate dehydrogenase‑like protein
RA	3,397,593	C→A	6.7%	A25D (GCC→GAC) ‡	PP_3002 →	shikimate dehydrogenase‑like protein
RA	3,397,594	C→A	6.7%	A25A (GCC→GCA) ‡	PP_3002 →	shikimate dehydrogenase‑like protein
RA	3,460,226	Δ1 bp	7.5%	coding (136/1446 nt)	PP_3075 ←	transcriptional regulator
RA	3,460,230:1	+A	7.6%	coding (132/1446 nt)	PP_3075 ←	transcriptional regulator
RA	3,466,841	T→G	14.6%	intergenic (‑16/+108)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,475,772	T→G	5.8%	Q314P (CAG→CCG)	PP_3087 ←	excinuclease ABC subunit A
RA	3,480,155	A→G	5.5%	L355P (CTG→CCG)	PP_3090 ←	OmpA domain‑containing protein
RA	3,493,652	A→C	5.8%	L184R (CTG→CGG) ‡	PP_3097 ←	hypothetical protein
RA	3,493,653	G→T	6.9%	L184M (CTG→ATG) ‡	PP_3097 ←	hypothetical protein
RA	3,498,264	C→G	7.4%	intergenic (‑668/+38)	PP_5562 ← / ← PP_5563	hypothetical protein/membrane protein
RA	3,510,692	A→G	7.1%	A151A (GCA→GCG)	PP_5575 →	hypothetical protein
RA	3,528,271	A→G	6.6%	S30G (AGC→GGC)	dnaEB →	error‑prone DNA polymerase
RA	3,551,209	G→C	8.7%	E121Q (GAG→CAG)	PP_3135 →	glycosyl transferase
RA	3,552,394	Δ1 bp	6.5%	coding (51/978 nt)	PP_3137 →	group 2 family glycosyl transferase
RA	3,552,399:1	+G	8.6%	coding (56/978 nt)	PP_3137 →	group 2 family glycosyl transferase
RA	3,573,247	T→C	6.9%	T700A (ACG→GCG)	PP_3155 ←	ferric siderophore receptor
RA	3,573,250	G→A	7.2%	R699C (CGC→TGC)	PP_3155 ←	ferric siderophore receptor
RA	3,577,639	T→C	6.0%	G18G (GGT→GGC)	PP_3158 →	hypothetical protein
RA	3,577,642	C→A	6.1%	A19A (GCC→GCA)	PP_3158 →	hypothetical protein
RA	3,577,644	T→A	6.0%	L20Q (CTG→CAG)	PP_3158 →	hypothetical protein
RA	3,577,653	T→A	6.9%	L23Q (CTG→CAG)	PP_3158 →	hypothetical protein
RA	3,577,655	T→G	6.9%	C24G (TGC→GGC)	PP_3158 →	hypothetical protein
RA	3,586,375	T→C	7.2%	V190A (GTG→GCG)	benK →	benzoate MFS transporter
RA	3,590,325	G→C	11.4%	R282R (CGG→CGC)	nicP‑I →	porin‑like protein
RA	3,590,330	G→C	10.0%	G284A (GGC→GCC)	nicP‑I →	porin‑like protein
RA	3,591,576	T→A	7.7%	L258M (TTG→ATG) ‡	PP_3169 →	membrane protein
RA	3,591,577	T→A	7.7%	L258* (TTG→TAG) ‡	PP_3169 →	membrane protein
RA	3,608,819	C→T	8.1%	A100T (GCC→ACC)	PP_3182 ←	GGDEF domain‑containing protein
RA	3,624,144	G→C	7.8%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,625,416	G→T	6.1%	G24G (GGC→GGA)	PP_3195 ←	hypothetical protein
RA	3,632,080	A→G	5.3%	N325S (AAC→AGC)	PP_5590 →	hypothetical protein
RA	3,632,085	G→T	5.2%	E327* (GAG→TAG) ‡	PP_5590 →	hypothetical protein
RA	3,632,086	A→C	5.4%	E327A (GAG→GCG) ‡	PP_5590 →	hypothetical protein
RA	3,633,135	C→T	8.0%	L203L (CTG→TTG)	PP_3201 →	BNR domain‑containing protein
RA	3,639,337	T→C	6.2%	V117A (GTG→GCG)	PP_3206 →	hypothetical protein
RA	3,641,817	T→A	7.9%	Q463L (CAG→CTG)	PP_3209 ←	isoxanthopterin deaminase
RA	3,641,822	T→C	5.5%	A461A (GCA→GCG)	PP_3209 ←	isoxanthopterin deaminase
RA	3,641,826	T→A	7.9%	Q460L (CAG→CTG)	PP_3209 ←	isoxanthopterin deaminase
RA	3,653,195	C→A	8.6%	Q361K (CAG→AAG) ‡	PP_3218 →	NtaA/SnaA/SoxA family monooxygenase
RA	3,653,197	G→C	8.3%	Q361H (CAG→CAC) ‡	PP_3218 →	NtaA/SnaA/SoxA family monooxygenase
RA	3,653,199	T→G	8.4%	L362* (TTA→TGA)	PP_3218 →	NtaA/SnaA/SoxA family monooxygenase
RA	3,668,555	T→C	7.3%	A44A (GCA→GCG)	PP_3231 ←	hypothetical protein
RA	3,669,936	A→G	6.0%	D77G (GAT→GGT)	fnrB →	Crp/Fnr family transcriptional regulator
RA	3,669,941	G→C	5.9%	E79Q (GAG→CAG)	fnrB →	Crp/Fnr family transcriptional regulator
RA	3,685,344	A→C	10.1%	intergenic (+26/‑33)	PP_5593 → / → PP_5594	hypothetical protein/hypothetical protein
RA	3,686,434	A→C	7.7%	D281A (GAC→GCC)	PP_3251 →	hypothetical protein
RA	3,686,436	C→T	7.7%	L282L (CTG→TTG)	PP_3251 →	hypothetical protein
RA	3,686,441	A→G	7.2%	Q283Q (CAA→CAG)	PP_3251 →	hypothetical protein
RA	3,686,443	G→T	8.2%	G284V (GGC→GTC)	PP_3251 →	hypothetical protein
RA	3,697,445	C→G	5.2%	S15T (AGC→ACC) ‡	PP_5595 ←	hypothetical protein
RA	3,697,446	T→C	5.2%	S15G (AGC→GGC) ‡	PP_5595 ←	hypothetical protein
RA	3,698,163	C→G	6.1%	G103A (GGC→GCC)	ybhN ←	phospholipid modification enzyme
RA	3,711,461	T→C	7.0%	E77G (GAG→GGG)	paaC ←	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
RA	3,723,683	G→T	9.4%	intergenic (+13/+17)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,723,684	C→T	9.2%	intergenic (+14/+16)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,723,685	A→G	9.2%	intergenic (+15/+15)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,723,686	A→C	9.2%	intergenic (+16/+14)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,727,128	T→A	7.6%	L114Q (CTG→CAG)	PP_3292 →	membrane protein
RA	3,727,133	Δ1 bp	7.8%	coding (346/645 nt)	PP_3292 →	membrane protein
RA	3,741,952	G→A	8.7%	intergenic (‑20/+393)	PP_3305 ← / ← PP_3306	TerC family membrane protein/hypothetical protein
RA	3,741,959	A→T	9.3%	intergenic (‑27/+386)	PP_3305 ← / ← PP_3306	TerC family membrane protein/hypothetical protein
RA	3,741,960	A→T	9.3%	intergenic (‑28/+385)	PP_3305 ← / ← PP_3306	TerC family membrane protein/hypothetical protein
RA	3,741,967	T→C	8.0%	intergenic (‑35/+378)	PP_3305 ← / ← PP_3306	TerC family membrane protein/hypothetical protein
RA	3,757,030	G→T	6.4%	L29M (CTG→ATG)	PP_3320 ←	hypothetical protein
RA	3,757,038	C→G	6.5%	G26A (GGC→GCC)	PP_3320 ←	hypothetical protein
RA	3,757,049	C→A	7.1%	Q22H (CAG→CAT)	PP_3320 ←	hypothetical protein
RA	3,757,453	A→G	5.2%	D92G (GAC→GGC)	PP_3321 →	hypothetical protein
RA	3,779,129	A→T	9.1%	S112T (TCT→ACT)	nikR ←	nickel‑responsive regulator
RA	3,779,130	C→T	8.8%	L111L (TTG→TTA) ‡	nikR ←	nickel‑responsive regulator
RA	3,779,131	A→G	8.8%	L111S (TTG→TCG) ‡	nikR ←	nickel‑responsive regulator
RA	3,779,132	A→T	8.4%	L111M (TTG→ATG) ‡	nikR ←	nickel‑responsive regulator
RA	3,779,680	C→T	6.5%	A44V (GCC→GTC)	nikA →	nickel ABC transporter substrate‑binding protein
RA	3,794,645	Δ1 bp	5.3%	coding (1809/1884 nt)	fcs ←	feruloyl‑CoA‑synthetase
RA	3,794,649	A→T	5.7%	L602Q (CTG→CAG)	fcs ←	feruloyl‑CoA‑synthetase
RA	3,794,652:1	+G	5.8%	coding (1802/1884 nt)	fcs ←	feruloyl‑CoA‑synthetase
RA	3,812,659	A→G	8.5%	D328G (GAC→GGC)	PP_3368 →	MFS transporter
RA	3,812,662	T→A	8.5%	I329N (ATT→AAT)	PP_3368 →	MFS transporter
RA	3,812,665	C→T	8.6%	A330V (GCC→GTC)	PP_3368 →	MFS transporter
RA	3,825,963	A→T	5.1%	V28D (GTC→GAC)	ptxS ←	2‑ketogluconate utilization repressor
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,853,771	T→C	6.5%	intergenic (+54/+28)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,778	A→G	6.6%	intergenic (+61/+21)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,869,858	T→G	6.7%	E354A (GAG→GCG) ‡	PP_3419 ←	sigma‑54 dependent transcriptional regulator/response regulator
RA	3,869,859	C→A	6.9%	E354* (GAG→TAG) ‡	PP_3419 ←	sigma‑54 dependent transcriptional regulator/response regulator
RA	3,883,597	C→G	5.5%	P206A (CCC→GCC) ‡	PP_3428 →	TPR repeat‑containing protein
RA	3,883,599	C→G	5.5%	P206P (CCC→CCG) ‡	PP_3428 →	TPR repeat‑containing protein
RA	3,901,484	A→G	5.5%	R54R (AGA→AGG)	PP_3444 →	glyoxalase family protein
RA	3,908,416	A→G	6.9%	N122S (AAC→AGC)	PP_3450 →	TPR repeat‑containing protein
RA	3,914,433	G→C	6.9%	R118R (CGC→CGG)	PP_3454 ←	transcriptional regulator
RA	3,949,092	Δ1 bp	9.1%	coding (442/642 nt)	PP_3485 ←	hypothetical protein
RA	3,949,097	G→A	9.1%	P146L (CCG→CTG)	PP_3485 ←	hypothetical protein
RA	3,949,101:1	+A	9.9%	coding (433/642 nt)	PP_3485 ←	hypothetical protein
RA	3,949,108	Δ1 bp	10.1%	coding (426/642 nt)	PP_3485 ←	hypothetical protein
RA	3,949,113	T→C	10.8%	S141G (AGC→GGC)	PP_3485 ←	hypothetical protein
RA	3,949,117:1	+G	7.8%	coding (417/642 nt)	PP_3485 ←	hypothetical protein
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,968,542	G→A	6.8%	D224N (GAT→AAT)	PP_3498 →	transposase
RA	3,979,696	A→T	5.1%	L312Q (CTG→CAG)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,982,835	G→T	6.2%	G118G (GGG→GGT)	PP_3510 →	hypothetical protein
RA	3,982,838	T→A	7.1%	H119Q (CAT→CAA)	PP_3510 →	hypothetical protein
RA	3,982,841	A→C	5.6%	*120C (TGA→TGC)	PP_3510 →	hypothetical protein
RA	3,996,897	G→T	6.4%	P89H (CCT→CAT)	PP_3525 ←	hypothetical protein
RA	3,996,900	A→C	5.7%	M88R (ATG→AGG)	PP_3525 ←	hypothetical protein
RA	4,018,015	G→C	6.1%	Q150H (CAG→CAC)	PP_3545 →	two‑component system sensor histidine kinase/response regulator
RA	4,030,275	A→C	5.8%	intergenic (+30/‑63)	PP_3553 → / → PP_3554	AMP‑binding domain‑containing protein/acyl‑CoA dehydrogenase family protein
RA	4,030,276	C→G	5.3%	intergenic (+31/‑62)	PP_3553 → / → PP_3554	AMP‑binding domain‑containing protein/acyl‑CoA dehydrogenase family protein
RA	4,030,277	A→T	5.6%	intergenic (+32/‑61)	PP_3553 → / → PP_3554	AMP‑binding domain‑containing protein/acyl‑CoA dehydrogenase family protein
RA	4,030,278	C→G	5.5%	intergenic (+33/‑60)	PP_3553 → / → PP_3554	AMP‑binding domain‑containing protein/acyl‑CoA dehydrogenase family protein
RA	4,030,279	G→T	6.1%	intergenic (+34/‑59)	PP_3553 → / → PP_3554	AMP‑binding domain‑containing protein/acyl‑CoA dehydrogenase family protein
RA	4,050,119	C→T	7.2%	T51I (ACC→ATC)	oprB‑III →	carbohydrate‑selective porin
RA	4,051,898	C→T	7.8%	R186H (CGT→CAT)	PP_3571 ←	acetylornithine deacetylase
RA	4,051,901	A→G	6.8%	M185T (ATG→ACG)	PP_3571 ←	acetylornithine deacetylase
RA	4,065,982	C→G	10.5%	D1028H (GAC→CAC)	mdtC ←	multidrug transporter membrane protein
RA	4,065,983	G→C	10.8%	T1027T (ACC→ACG)	mdtC ←	multidrug transporter membrane protein
RA	4,065,988	G→C	9.3%	R1026G (CGT→GGT)	mdtC ←	multidrug transporter membrane protein
RA	4,065,989	C→G	9.1%	V1025V (GTG→GTC)	mdtC ←	multidrug transporter membrane protein
RA	4,069,170	G→T	6.0%	L997M (CTG→ATG)	mdtB ←	multidrug transporter membrane protein
RA	4,084,406	C→A	5.1%	S183* (TCG→TAG)	PP_3594 →	amino acid ABC transporter permease
RA	4,103,203	T→C	5.7%	T15A (ACG→GCG)	PP_3611 ←	hypothetical protein
RA	4,114,318	Δ1 bp	8.3%	intergenic (+65/+81)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,114,327	T→A	8.5%	intergenic (+74/+72)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,114,328	C→T	8.5%	intergenic (+75/+71)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,114,329	G→T	8.7%	intergenic (+76/+70)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,114,334	A→C	9.6%	intergenic (+81/+65)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,114,336	A→C	7.9%	intergenic (+83/+63)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,114,340	C→T	8.6%	intergenic (+87/+59)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,114,341	A→G	8.7%	intergenic (+88/+58)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,114,345	G→T	8.3%	intergenic (+92/+54)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,114,352	A→C	7.2%	intergenic (+99/+47)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,114,353	A→G	7.7%	intergenic (+100/+46)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,114,354	T→A	9.4%	intergenic (+101/+45)	PP_3619 → / ← ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
RA	4,117,263	C→T	6.1%	N136N (AAC→AAT)	iorA‑II →	isoquinoline 1‑oxidoreductase subunit alpha
RA	4,120,236	T→C	6.1%	F218L (TTC→CTC)	adhB →	alcohol dehydrogenase cytochrome c subunit
RA	4,138,575	A→C	10.0%	D25A (GAC→GCC)	PP_3643 →	oxidoreductase
RA	4,138,583	G→C	10.0%	G28R (GGC→CGC) ‡	PP_3643 →	oxidoreductase
RA	4,138,585	C→A	9.1%	G28G (GGC→GGA) ‡	PP_3643 →	oxidoreductase
RA	4,138,586	T→G	11.3%	S29A (TCG→GCG) ‡	PP_3643 →	oxidoreductase
RA	4,138,588	G→C	9.8%	S29S (TCG→TCC) ‡	PP_3643 →	oxidoreductase
RA	4,180,945	A→G	5.8%	E270E (GAA→GAG)	PP_3678 →	hypothetical protein
RA	4,180,948	A→G	5.8%	K271K (AAA→AAG)	PP_3678 →	hypothetical protein
RA	4,208,661	A→T	7.1%	Q205L (CAG→CTG)	PP_3692 →	hypothetical protein
RA	4,233,856	G→C	7.3%	A403A (GCC→GCG)	PP_3711 ←	diguanylate cyclase
RA	4,242,792	A→T	5.7%	S15S (TCT→TCA) ‡	PP_3719 ←	putrescine‑binding protein
RA	4,242,794	A→G	5.7%	S15P (TCT→CCT) ‡	PP_3719 ←	putrescine‑binding protein
RA	4,246,185	C→G	9.6%	M30I (ATG→ATC)	alr ←	alanine racemase
RA	4,246,188	C→G	9.8%	S29S (TCG→TCC)	alr ←	alanine racemase
RA	4,248,705	A→G	6.4%	V441A (GTG→GCG)	PP_3724 ←	acyl‑CoA synthetase
RA	4,273,500	G→T	7.4%	A126D (GCT→GAT)	glcC ←	transcriptional regulator GlcC
RA	4,282,352	C→A	9.8%	R293L (CGC→CTC)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,355	A→G	9.0%	L292P (CTG→CCG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,358	C→T	10.0%	R291Q (CGG→CAG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,361	T→G	10.2%	E290A (GAG→GCG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,286,678	G→C	8.9%	A353G (GCC→GGC)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,286,681	T→A	9.2%	Q352L (CAG→CTG)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,286,684	T→A	9.2%	Q351L (CAG→CTG)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,286,687	G→C	9.1%	A350G (GCC→GGC)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,301,577	G→C	6.7%	intergenic (+67/‑1233)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,301,579	G→C	6.4%	intergenic (+69/‑1231)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,316,022	A→C	10.5%	A35A (GCA→GCC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,025	G→T	10.5%	A36A (GCG→GCT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,658	C→T	6.6%	H247H (CAC→CAT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,663	T→A	6.9%	V249D (GTC→GAC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,668	A→G	6.7%	M251V (ATG→GTG)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,331,665	T→C	5.5%	L122P (CTT→CCT) ‡	PP_3803 →	cation ABC transporter permease
RA	4,331,666	T→A	7.2%	L122L (CTT→CTA) ‡	PP_3803 →	cation ABC transporter permease
RA	4,331,667	G→A	5.2%	G123S (GGC→AGC)	PP_3803 →	cation ABC transporter permease
RA	4,344,302	A→T	7.5%	intergenic (+33/‑123)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,304	C→T	7.3%	intergenic (+35/‑121)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,305	A→G	7.4%	intergenic (+36/‑120)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,310	C→G	7.8%	intergenic (+41/‑115)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,313	C→G	7.7%	intergenic (+44/‑112)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,318	C→T	12.1%	intergenic (+49/‑107)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,319	A→G	12.3%	intergenic (+50/‑106)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,321	A→T	11.9%	intergenic (+52/‑104)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,348,705	A→G	47.0%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,386,775	G→A	5.7%	S251L (TCG→TTG)	PP_3863 ←	tail protein
RA	4,407,546	G→A	8.3%	L100F (CTC→TTC)	PP_3889 ←	putative Phage integrase
RA	4,407,892	G→C	6.8%	A131G (GCC→GGC)	PP_3890 ←	hypothetical protein
RA	4,407,899	T→G	6.7%	I129L (ATC→CTC)	PP_3890 ←	hypothetical protein
RA	4,424,070	T→C	6.0%	N101N (AAT→AAC)	PP_3915 →	hypothetical protein
RA	4,424,882	G→C	5.1%	H21D (CAC→GAC)	PP_5647 ←	hypothetical protein
RA	4,424,884	T→C	5.0%	H20R (CAT→CGT)	PP_5647 ←	hypothetical protein
RA	4,439,030	A→G	5.9%	intergenic (‑2/‑61)	PP_3933 ← / → PP_3934	membrane protein/LysR family transcriptional regulator
RA	4,446,306	T→C	7.2%	P38P (CCA→CCG)	nicD ←	N‑formylmaleamate deformylase
RA	4,447,843	C→G	7.6%	intergenic (‑279/‑43)	nicC ← / → nicX	6‑hydroxynicotinate 3‑monooxygenase/2,5‑dihydroxypyridine 5,6‑dioxygenase
RA	4,447,848	Δ1 bp	6.9%	intergenic (‑284/‑38)	nicC ← / → nicX	6‑hydroxynicotinate 3‑monooxygenase/2,5‑dihydroxypyridine 5,6‑dioxygenase
RA	4,469,107	A→T	5.5%	E451V (GAA→GTA)	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,486,215	G→T	5.1%	A29A (GCG→GCT)	PP_3978 →	hypothetical protein
RA	4,486,216	A→C	5.1%	S30R (AGC→CGC)	PP_3978 →	hypothetical protein
RA	4,497,853	T→C	6.0%	K33E (AAG→GAG)	PP_5651 ←	hypothetical protein
RA	4,503,789	C→T	14.4%	intergenic (+38/‑60)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,503,790	A→G	13.6%	intergenic (+39/‑59)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,512,462	C→A	9.2%	G9V (GGT→GTT)	lolA ←	outer membrane lipoprotein carrier protein
RA	4,512,465	T→G	9.3%	N8T (AAC→ACC)	lolA ←	outer membrane lipoprotein carrier protein
RA	4,517,188	C→A	7.0%	intergenic (+25/+61)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,189	A→C	6.9%	intergenic (+26/+60)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,190	G→C	6.8%	intergenic (+27/+59)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,191	G→T	7.9%	intergenic (+28/+58)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,192	T→G	7.1%	intergenic (+29/+57)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,520,454	A→T	5.6%	intergenic (+45/+27)	cspD → / ← icd	DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase
RA	4,522,499	C→G	5.5%	A116A (GCC→GCG)	idh →	isocitrate dehydrogenase
RA	4,526,642	G→T	5.1%	G151V (GGC→GTC)	PP_4015 →	HflD‑like high frequency lysogenization protein
RA	4,530,025	T→A	10.0%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,530,026	T→A	10.1%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,534,016	C→T	5.5%	G95G (GGC→GGT)	cpo →	non‑heme chloroperoxidase
RA	4,556,558	C→T	7.7%	G307S (GGT→AGT)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,034	A→C	6.8%	L148R (CTG→CGG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,574,228	C→G	5.8%	R300R (CGC→CGG)	glgX →	glycogen debranching enzyme
RA	4,574,229	G→C	5.9%	G301R (GGC→CGC)	glgX →	glycogen debranching enzyme
RA	4,576,129	C→T	7.2%	P176S (CCG→TCG)	ybhP‑II →	phosphohydrolase
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	100%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,605,501	C→G	5.8%	A306G (GCC→GGC)	PP_4077 →	hypothetical protein
RA	4,605,506	G→C	5.7%	E308Q (GAG→CAG) ‡	PP_4077 →	hypothetical protein
RA	4,605,507	A→T	6.9%	E308V (GAG→GTG) ‡	PP_4077 →	hypothetical protein
RA	4,605,508	G→C	5.8%	E308D (GAG→GAC) ‡	PP_4077 →	hypothetical protein
RA	4,605,513	C→G	5.9%	A310G (GCC→GGC)	PP_4077 →	hypothetical protein
RA	4,644,062	A→T	5.6%	N310I (AAC→ATC)	PP_4108 →	4‑aminobutyrate aminotransferase
RA	4,673,549	G→C	11.1%	P107P (CCG→CCC)	PP_4137 →	outer membrane siderophore receptor
RA	4,673,550	G→C	11.1%	G108R (GGG→CGG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,673,551	G→C	10.8%	G108A (GGG→GCG) ‡	PP_4137 →	outer membrane siderophore receptor
MC JC	4,682,448	Δ13 bp	100%	coding (738‑750/1431 nt)	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,687,964	A→G	7.3%	I314V (ATC→GTC)	PP_4148 →	ABC transporter permease
RA	4,697,324	T→A	5.6%	intergenic (+45/+17)	PP_4156 → / ← kdpE	LysR family transcriptional regulator/two‑component system DNA‑binding response regulator KdpE
RA	4,697,326	T→A	5.6%	intergenic (+47/+15)	PP_4156 → / ← kdpE	LysR family transcriptional regulator/two‑component system DNA‑binding response regulator KdpE
RA	4,701,515	C→G	5.9%	A649P (GCG→CCG)	kdpB ←	K+ transporting ATPase subunit KdpB
RA	4,705,413	T→A	19.5%	intergenic (‑151/+26)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,414	T→A	19.6%	intergenic (‑152/+25)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,424	A→G	19.6%	intergenic (‑162/+15)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,425	G→A	16.9%	intergenic (‑163/+14)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,285	G→T	5.5%	Y65* (TAC→TAA) ‡	PP_4168 ←	hypothetical protein
RA	4,710,286	T→A	5.4%	Y65F (TAC→TTC) ‡	PP_4168 ←	hypothetical protein
RA	4,710,287	A→C	5.3%	Y65D (TAC→GAC) ‡	PP_4168 ←	hypothetical protein
RA	4,710,293	T→A	5.6%	S63C (AGC→TGC)	PP_4168 ←	hypothetical protein
RA	4,711,518	C→A	6.0%	A8A (GCG→GCT)	gpsA ←	glycerol‑3‑phosphate dehydrogenase
RA	4,711,524	A→C	5.6%	P6P (CCT→CCG) ‡	gpsA ←	glycerol‑3‑phosphate dehydrogenase
RA	4,711,525	G→T	5.9%	P6H (CCT→CAT) ‡	gpsA ←	glycerol‑3‑phosphate dehydrogenase
RA	4,711,531	T→G	6.3%	Q4P (CAG→CCG)	gpsA ←	glycerol‑3‑phosphate dehydrogenase
RA	4,712,102:1	+T	5.0%	coding (334/2115 nt)	PP_4171 →	hypothetical protein
RA	4,717,954	G→T	6.8%	E173D (GAG→GAT)	fabB →	3‑oxoacyl‑ACP synthase
RA	4,717,956	A→T	7.0%	Q174L (CAG→CTG)	fabB →	3‑oxoacyl‑ACP synthase
RA	4,717,958	A→C	7.0%	I175L (ATC→CTC)	fabB →	3‑oxoacyl‑ACP synthase
RA	4,721,633	C→T	6.7%	intergenic (‑38/+26)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,634	G→T	6.8%	intergenic (‑39/+25)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,635	A→C	6.5%	intergenic (‑40/+24)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,636	A→G	6.5%	intergenic (‑41/+23)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,723,504	C→A	10.0%	L20L (CTG→CTT)	htpG ←	chaperone protein HtpG
RA	4,730,874	G→A	5.4%	G190G (GGC→GGT)	lpdG ←	dihydrolipoyl dehydrogenase
RA	4,731,499	T→G	7.5%	intergenic (‑56/+38)	lpdG ← / ← sucB	dihydrolipoyl dehydrogenase/2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA	4,731,500	T→C	7.8%	intergenic (‑57/+37)	lpdG ← / ← sucB	dihydrolipoyl dehydrogenase/2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA	4,731,501	G→A	7.9%	intergenic (‑58/+36)	lpdG ← / ← sucB	dihydrolipoyl dehydrogenase/2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA	4,731,502	C→A	7.7%	intergenic (‑59/+35)	lpdG ← / ← sucB	dihydrolipoyl dehydrogenase/2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA	4,734,025	A→C	5.2%	L537R (CTG→CGG)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,734,028	T→G	5.1%	E536A (GAG→GCG)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,739,355	T→A	6.6%	intergenic (‑234/‑119)	sdhC ← / → gltA	succinate dehydrogenase membrane b‑556 subunit/citrate synthase
RA	4,739,357	G→T	6.6%	intergenic (‑236/‑117)	sdhC ← / → gltA	succinate dehydrogenase membrane b‑556 subunit/citrate synthase
RA	4,739,358	A→C	6.6%	intergenic (‑237/‑116)	sdhC ← / → gltA	succinate dehydrogenase membrane b‑556 subunit/citrate synthase
RA	4,739,360	T→A	6.6%	intergenic (‑239/‑114)	sdhC ← / → gltA	succinate dehydrogenase membrane b‑556 subunit/citrate synthase
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,839	C→G	21.2%	intergenic (+76/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,841	T→A	21.6%	intergenic (+78/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,842	T→A	19.5%	intergenic (+79/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,844	C→G	20.6%	intergenic (+81/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,757,896	A→C	5.1%	Q390P (CAA→CCA) ‡	ompQ →	outer membrane pyoverdine efflux protein
RA	4,757,897	A→T	5.1%	Q390H (CAA→CAT) ‡	ompQ →	outer membrane pyoverdine efflux protein
RA	4,757,898	G→T	5.3%	G391W (GGG→TGG)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,758,730	T→G	7.3%	S352R (AGC→CGC)	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,765,310	A→G	6.1%	intergenic (+49/‑38)	pvdE → / → fpvA	pyoverdine ABC transporter ATP‑binding protein/permease/TonB‑dependent outer membrane ferripyoverdine receptor FpvA
RA	4,767,818	C→T	8.2%	intergenic (+32/+37)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,767,819	A→G	9.1%	intergenic (+33/+36)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,783,688	A→G	5.8%	L1209P (CTG→CCG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,691	C→T	5.7%	R1208Q (CGG→CAG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,788,247	G→C	5.7%	L1865V (CTA→GTA)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,789,883	C→G	5.4%	V1319V (GTG→GTC)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,789,896	C→G	5.1%	G1315A (GGA→GCA)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,796,604	A→G	11.0%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,612	C→T	13.9%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,614	G→C	13.9%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,617	G→C	14.1%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	14.3%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	17.0%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,802,077	T→G	5.1%	D90A (GAC→GCC)	PP_4230 ←	hypothetical protein
RA	4,804,866	A→G	5.2%	C68R (TGC→CGC)	PP_4233 ←	oxidoreductase small subunit
RA	4,813,332	T→A	5.5%	F187I (TTT→ATT) ‡	PP_5666 →	McbB family microcin B17‑like processing protein
RA	4,813,333	T→A	5.5%	F187Y (TTT→TAT) ‡	PP_5666 →	McbB family microcin B17‑like processing protein
RA	4,813,334	T→A	5.5%	F187L (TTT→TTA) ‡	PP_5666 →	McbB family microcin B17‑like processing protein
RA	4,834,527	G→A	7.1%	G101D (GGC→GAC)	PP_4247 →	exonuclease
RA	4,837,481	T→C	6.9%	M17T (ATG→ACG)	ccoO‑I →	cbb3‑type cytochrome c oxidase subunit
RA	4,837,489	G→A	8.4%	A20T (GCC→ACC)	ccoO‑I →	cbb3‑type cytochrome c oxidase subunit
RA	4,858,701	A→T	7.8%	intergenic (‑207/+18)	PP_mr50 ← / ← ligA	Bacteria_large_SRP ncRNA/DNA ligase
RA	4,858,702	C→G	7.6%	intergenic (‑208/+17)	PP_mr50 ← / ← ligA	Bacteria_large_SRP ncRNA/DNA ligase
RA	4,858,703	A→T	6.2%	intergenic (‑209/+16)	PP_mr50 ← / ← ligA	Bacteria_large_SRP ncRNA/DNA ligase
RA	4,864,334	Δ1 bp	8.3%	coding (1539/3489 nt)	smc ←	chromosome partition protein Smc
RA	4,888,342	C→G	5.1%	V467V (GTC→GTG)	gcl →	glyoxylate carboligase
RA	4,888,343	C→G	5.1%	H468D (CAC→GAC)	gcl →	glyoxylate carboligase
RA	4,891,873	G→A	7.8%	V345V (GTG→GTA)	ttuD →	hydroxypyruvate reductase
RA	4,891,874	T→C	7.8%	Y346H (TAC→CAC)	ttuD →	hydroxypyruvate reductase
RA	4,900,065	A→G	9.1%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,069	G→A	9.2%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,070	T→C	9.3%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,074	C→T	10.2%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,911,779	C→G	6.6%	Q134H (CAG→CAC)	ccmH ←	cytochrome c heme lyase subunit
RA	4,911,782:1	+T	6.6%	coding (399/477 nt)	ccmH ←	cytochrome c heme lyase subunit
RA	4,911,791	Δ1 bp	6.4%	coding (390/477 nt)	ccmH ←	cytochrome c heme lyase subunit
RA	4,911,795	C→G	6.4%	R129P (CGT→CCT)	ccmH ←	cytochrome c heme lyase subunit
RA	4,921,589	C→G	5.2%	A666A (GCC→GCG)	PP_4330 →	toxin‑like protein
RA	4,944,738	C→T	9.9%	intergenic (+98/+700)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,944,740	C→T	9.8%	intergenic (+100/+698)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,944,741	A→G	9.9%	intergenic (+101/+697)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,944,743	A→G	9.8%	intergenic (+103/+695)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,950,972	T→G	7.6%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,962,191:1	+C	6.1%	coding (247/1356 nt)	atoC ←	two‑component system DNA‑binding transcriptional activator AtoC
RA	4,963,027	G→C	5.8%	L210V (CTG→GTG)	fleS ←	two‑component system sensor histidine kinase FleS
RA	4,967,786	C→T	5.2%	G107S (GGT→AGT)	PP_4377 ←	flagellin FlaG
RA	4,969,525	Δ1 bp	8.7%	coding (718/2064 nt)	fliC ←	flagellin
RA	4,969,526	Δ1 bp	8.7%	coding (717/2064 nt)	fliC ←	flagellin
RA	4,969,527	Δ1 bp	8.7%	coding (716/2064 nt)	fliC ←	flagellin
RA	4,973,885:1	+T	6.0%	coding (1719/2043 nt)	flgK ←	flagellar hook‑associated protein FlgK
RA	4,975,208	C→T	6.7%	L132L (CTG→CTA)	flgK ←	flagellar hook‑associated protein FlgK
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,986,048	C→G	7.3%	P97R (CCG→CGG)	flgA →	flagella basal body P‑ring formation protein
RA	4,986,815	T→C	7.1%	V47A (GTA→GCA)	flgM →	flagellin biosynthesis negative regulator FlgM
RA	4,988,362	G→C	8.3%	intergenic (+32/+62)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,988,363	C→A	8.3%	intergenic (+33/+61)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,988,364	T→G	8.3%	intergenic (+34/+60)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,988,365	G→C	8.3%	intergenic (+35/+59)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,998,171	G→T	10.5%	intergenic (‑71/‑145)	PP_4405 ← / → PP_4406	sensory box protein/hypothetical protein
RA	4,998,172	A→C	11.5%	intergenic (‑72/‑144)	PP_4405 ← / → PP_4406	sensory box protein/hypothetical protein
RA	5,052,254	C→G	5.9%	R87P (CGA→CCA)	PP_4452 ←	NAD/NADP octopine/nopaline dehydrogenase family protein
RA	5,052,263	T→C	6.5%	N84S (AAT→AGT)	PP_4452 ←	NAD/NADP octopine/nopaline dehydrogenase family protein
RA	5,052,265	C→G	6.7%	V83V (GTG→GTC)	PP_4452 ←	NAD/NADP octopine/nopaline dehydrogenase family protein
RA	5,056,191	C→G	5.8%	E46Q (GAG→CAG)	gsiC ←	glutathione ABC transporter permease
RA	5,070,511	G→A	5.6%	R126C (CGC→TGC)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,070,513	A→T	5.6%	L125Q (CTG→CAG)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,070,516	A→T	5.1%	L124Q (CTG→CAG)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,070,518	T→C	5.6%	A123A (GCA→GCG)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,086,998	C→A	6.5%	A109S (GCC→TCC)	astB ←	N‑succinylarginine dihydrolase
RA	5,088,892	G→C	5.4%	P316R (CCG→CGG)	astA‑I ←	arginine N‑succinyltransferase subunit beta
RA	5,105,663	T→C	6.6%	S817G (AGC→GGC)	ydiJ ←	putative oxidoreductase
RA	5,105,668	G→A	6.6%	P815L (CCG→CTG)	ydiJ ←	putative oxidoreductase
RA	5,138,814	A→T	6.6%	intergenic (+38/‑95)	PP_4523 → / → PP_4524	agmatinase/sodium‑solute symporter
RA	5,138,816	T→A	7.1%	intergenic (+40/‑93)	PP_4523 → / → PP_4524	agmatinase/sodium‑solute symporter
RA	5,162,630	G→T	9.8%	intergenic (+153/+48)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,162,661	A→G	8.5%	intergenic (+184/+17)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,163,778	C→T	7.1%	G25S (GGC→AGC)	PP_4545 ←	beta‑ketodecanoyl‑ACP synthase
RA	5,163,787	C→T	7.4%	V22M (GTG→ATG)	PP_4545 ←	beta‑ketodecanoyl‑ACP synthase
RA	5,182,059	G→T	8.4%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,065	T→G	8.7%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,066	C→A	9.5%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,072	A→C	10.4%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,186,047:1	+C	5.4%	coding (413/1716 nt)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,186,053	T→G	5.9%	E136A (GAG→GCG)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,187,980	T→C	9.2%	L162S (TTG→TCG)	PP_4567 →	hypothetical protein
RA	5,194,887	T→G	6.0%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,207,303	A→G	6.0%	N79D (AAC→GAC)	PP_4588 →	nitroreductase family oxidoreductase
RA	5,212,472	C→T	7.2%	intergenic (+36/+58)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,475	G→A	7.7%	intergenic (+39/+55)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,244,235	G→C	5.7%	P83A (CCG→GCG)	hmgA ←	homogentisate 1,2‑dioxygenase
RA	5,244,248	G→C	6.3%	R78R (CGC→CGG)	hmgA ←	homogentisate 1,2‑dioxygenase
RA	5,247,267	G→T	6.3%	A465E (GCG→GAG)	PP_4623 ←	hypothetical protein
RA	5,262,496	T→A	7.0%	T223T (ACT→ACA)	PP_4638 →	methylenetetrahydrofolate reductase
RA	5,268,951	T→A	9.6%	intergenic (+19/+17)	PP_4643 → / ← radA	xanthine/uracil permease family protein/DNA repair enzyme
RA	5,268,952	T→A	9.6%	intergenic (+20/+16)	PP_4643 → / ← radA	xanthine/uracil permease family protein/DNA repair enzyme
RA	5,276,840	G→A	5.4%	intergenic (‑144/‑200)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,277,653	T→G	7.1%	I205S (ATC→AGC)	PP_4652 →	membrane protein
RA	5,277,657	A→T	7.1%	E206D (GAA→GAT)	PP_4652 →	membrane protein
RA	5,277,661	C→A	7.1%	L208M (CTG→ATG)	PP_4652 →	membrane protein
RA	5,284,459	C→G	6.1%	S288R (AGC→AGG)	PP_4658 →	methyl‑accepting chemotaxis protein
RA	5,291,245	G→C	5.4%	P281P (CCG→CCC)	PP_4664 →	LysR family transcriptional regulator
RA	5,291,249	T→A	5.6%	Y283N (TAT→AAT)	PP_4664 →	LysR family transcriptional regulator
RA	5,295,085	C→T	8.2%	R189R (CGC→CGT)	PP_4668 →	LysR family transcriptional regulator
RA	5,295,088	G→C	8.3%	Q190H (CAG→CAC)	PP_4668 →	LysR family transcriptional regulator
RA	5,295,089	G→C	8.3%	V191L (GTG→CTG)	PP_4668 →	LysR family transcriptional regulator
RA	5,295,092	A→G	8.3%	T192A (ACG→GCG)	PP_4668 →	LysR family transcriptional regulator
RA	5,301,751	C→G	5.3%	Q674H (CAG→CAC) ‡	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,301,752	T→C	5.1%	Q674R (CAG→CGG) ‡	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,313,276	C→G	6.4%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,322,834	A→C	5.4%	S140A (TCC→GCC)	mrcB ←	transglycosylase/transpeptidase
RA	5,325,511	T→A	9.8%	noncoding (133/149 nt)	PP_mr52 →	PrrF ncRNA
RA	5,345,974	G→A	7.3%	G458S (GGC→AGC)	acsA‑II →	acetyl‑CoA synthetase
RA	5,345,977	G→A	7.4%	V459M (GTG→ATG) ‡	acsA‑II →	acetyl‑CoA synthetase
RA	5,345,978	T→C	7.5%	V459A (GTG→GCG) ‡	acsA‑II →	acetyl‑CoA synthetase
RA	5,345,981	T→C	7.3%	L460P (CTG→CCG)	acsA‑II →	acetyl‑CoA synthetase
RA	5,348,718	Δ1 bp	9.3%	coding (1192/2937 nt)	PP_4704 →	hypothetical protein
RA	5,367,613	G→T	5.1%	E45D (GAG→GAT)	PP_4720 →	RNA‑binding protein
RA	5,368,670	G→T	5.4%	R14S (CGC→AGC)	greA ←	transcription elongation factor GreA
RA	5,368,671	A→C	5.8%	A13A (GCT→GCG)	greA ←	transcription elongation factor GreA
RA	5,378,260	A→T	5.3%	intergenic (‑37/‑156)	grpE ← / → recN	heat shock protein GrpE/DNA repair/recombination protein
RA	5,378,883	C→G	5.2%	A156A (GCC→GCG)	recN →	DNA repair/recombination protein
RA	5,378,884	C→G	5.2%	R157G (CGC→GGC)	recN →	DNA repair/recombination protein
RA	5,388,882	C→A	5.0%	L798M (CTG→ATG)	dld2 →	D‑lactate dehydrogenase
RA	5,390,431	T→G	6.8%	intergenic (+520/‑202)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,390,432	C→A	6.9%	intergenic (+521/‑201)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,390,656	G→C	5.6%	noncoding (24/87 nt)	PP_mr56 →	C4 ncRNA
RA	5,401,420	C→T	8.2%	intergenic (+796/+372)	PP_4743 → / ← PP_4745	hypothetical protein/transposase
RA	5,419,630	G→C	6.5%	E106Q (GAG→CAG)	PP_4759 →	transcriptional regulator, GntR family
RA	5,436,997	T→A	5.1%	S188C (AGC→TGC)	PP_4775 ←	hypothetical protein
RA	5,455,242	C→T	7.1%	L117L (CTG→CTA)	PP_4792 ←	hypothetical protein
RA	5,463,400	T→A	6.2%	intergenic (‑51/+48)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,463,401	T→A	7.3%	intergenic (‑52/+47)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,463,407	Δ1 bp	6.7%	intergenic (‑58/+41)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,472,156	T→A	5.3%	K95M (AAG→ATG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,472,157	T→A	5.3%	K95* (AAG→TAG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
JC	5,476,587	Δ3 bp	100%	coding (817‑819/1317 nt)	PP_4813 →	PAP2 family protein/DedA family protein
RA	5,516,304	A→G	5.0%	I39V (ATC→GTC)	PP_4849 →	molecular chaperone DnaK
RA	5,518,539	A→T	5.4%	A14A (GCT→GCA)	PP_4850 ←	membrane protein
RA	5,530,424	G→A	6.3%	A182V (GCC→GTC)	braF ←	ABC transporter ATP‑binding protein
RA	5,537,058	A→G	13.1%	intergenic (+35/+68)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,061	A→T	18.1%	intergenic (+38/+65)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,062	G→C	15.1%	intergenic (+39/+64)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,067	A→G	11.0%	intergenic (+44/+59)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,075	G→C	13.4%	intergenic (+52/+51)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,539,013	T→G	8.0%	K658T (AAG→ACG)	PP_4872 ←	hypothetical protein
RA	5,539,015	G→C	8.3%	H657Q (CAC→CAG)	PP_4872 ←	hypothetical protein
RA	5,539,020	G→C	8.5%	L656V (CTG→GTG)	PP_4872 ←	hypothetical protein
RA	5,539,022	C→A	8.1%	R655L (CGT→CTT)	PP_4872 ←	hypothetical protein
RA	5,545,859	G→C	6.8%	R209G (CGT→GGT)	rlmB ←	23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
RA	5,545,860	G→C	6.8%	T208T (ACC→ACG)	rlmB ←	23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
RA	5,555,423	G→A	6.8%	Y34Y (TAC→TAT)	PP_4887 ←	hypothetical protein
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,558,505	A→T	10.6%	S250T (TCC→ACC)	purA ←	adenylosuccinate synthetase
RA	5,558,507	A→T	10.6%	I249N (ATT→AAT)	purA ←	adenylosuccinate synthetase
RA	5,558,509	A→T	10.8%	G248G (GGT→GGA)	purA ←	adenylosuccinate synthetase
RA	5,559,744	A→G	5.2%	A251A (GCT→GCC)	hisZ ←	ATP phosphoribosyltransferase regulatory subunit
RA	5,570,177	T→G	6.8%	A24A (GCA→GCC) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,570,178	G→C	6.8%	A24G (GCA→GGA) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,570,179	C→A	6.8%	A24S (GCA→TCA) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,584,537	T→A	8.3%	I399F (ATC→TTC)	parC ←	DNA topoisomerase IV subunit A
RA	5,584,541	G→A	7.1%	I397I (ATC→ATT) ‡	parC ←	DNA topoisomerase IV subunit A
RA	5,584,542	A→T	8.3%	I397N (ATC→AAC) ‡	parC ←	DNA topoisomerase IV subunit A
RA	5,584,543	T→C	6.6%	I397V (ATC→GTC) ‡	parC ←	DNA topoisomerase IV subunit A
RA	5,584,547	T→A	6.8%	E395D (GAA→GAT)	parC ←	DNA topoisomerase IV subunit A
RA	5,608,293:1	+A	8.3%	intergenic (‑155/+33)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,294	T→A	11.7%	intergenic (‑156/+32)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,300	G→C	11.1%	intergenic (‑162/+26)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,307	T→A	12.5%	intergenic (‑169/+19)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,611,317	C→T	6.1%	S104L (TCG→TTG)	PP_4931 →	hypothetical protein
RA	5,611,323	G→C	6.2%	G106A (GGC→GCC)	PP_4931 →	hypothetical protein
RA	5,611,326	C→A	5.3%	T107N (ACC→AAC) ‡	PP_4931 →	hypothetical protein
RA	5,611,327	C→G	5.3%	T107T (ACC→ACG) ‡	PP_4931 →	hypothetical protein
RA	5,611,328	T→G	5.3%	L108V (TTG→GTG)	PP_4931 →	hypothetical protein
RA	5,611,331	G→C	5.3%	A109P (GCC→CCC)	PP_4931 →	hypothetical protein
RA	5,611,337	A→G	5.4%	N111D (AAC→GAC)	PP_4931 →	hypothetical protein
RA	5,619,471	A→G	6.9%	C344R (TGT→CGT)	PP_4938 ←	glycosyl transferase
RA	5,622,556	A→G	7.4%	A394A (GCT→GCC)	PP_4941 ←	hypothetical protein
RA	5,639,601	C→A	6.5%	A231A (GCC→GCA)	PP_4950 →	hypothetical protein
RA	5,655,631	T→G	11.0%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	13.7%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,657,893	C→A	8.7%	intergenic (‑199/‑53)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,657,894	T→G	9.6%	intergenic (‑200/‑52)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,658,116	T→G	5.4%	H57Q (CAT→CAG)	sahR →	methionine metabolism transcriptional regulator
RA	5,659,684	T→A	5.9%	L243Q (CTG→CAG)	metK →	methionine adenosyltransferase
RA	5,659,686	A→T	5.8%	T244S (ACT→TCT) ‡	metK →	methionine adenosyltransferase
RA	5,659,688	T→A	5.8%	T244T (ACT→ACA) ‡	metK →	methionine adenosyltransferase
RA	5,667,258	G→T	6.3%	intergenic (+36/+35)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,259	A→C	6.3%	intergenic (+37/+34)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,766	A→G	5.4%	intergenic (+128/+12)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
JC	5,681,415	+CGGG	100%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,697,314	C→A	8.4%	intergenic (+24/‑53)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,697,316	G→C	7.7%	intergenic (+26/‑51)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,697,318	T→G	8.8%	intergenic (+28/‑49)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,698,178	A→C	5.2%	D271A (GAC→GCC)	hslU →	protease HslVU ATPase subunit
RA	5,725,646	T→G	5.9%	K440N (AAA→AAC)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,725,652	C→G	6.0%	P438P (CCG→CCC)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,725,658	C→A	5.9%	P436P (CCG→CCT)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,734,000	G→A	6.2%	intergenic (‑26/+131)	proY ← / ← hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
RA	5,740,457	G→A	11.6%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,467	T→G	17.9%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,470	A→T	11.5%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,471	A→T	11.0%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,474	C→A	11.4%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,743,351	A→C	6.6%	intergenic (‑184/+63)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,751,719	G→T	7.5%	intergenic (‑157/‑314)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,729	G→T	6.4%	intergenic (‑167/‑304)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,730	G→T	6.0%	intergenic (‑168/‑303)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,735	A→C	5.1%	intergenic (‑173/‑298)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,736	A→C	5.3%	intergenic (‑174/‑297)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,740	C→T	5.4%	intergenic (‑178/‑293)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,746	A→C	8.6%	intergenic (‑184/‑287)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,753,485	T→G	7.2%	intergenic (+46/‑320)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,753,486	C→A	6.6%	intergenic (+47/‑319)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,777,401	G→T	6.5%	intergenic (+20/+23)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,777,402	C→G	7.7%	intergenic (+21/+22)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,777,403	A→C	6.4%	intergenic (+22/+21)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,790,143	A→T	6.4%	intergenic (+22/+46)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,150	A→G	6.1%	intergenic (+29/+39)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,151	C→G	6.1%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,152	C→T	6.2%	intergenic (+31/+37)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,159	A→T	7.9%	intergenic (+38/+30)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,798,964	G→T	5.9%	P300Q (CCA→CAA)	PP_5077 ←	hypothetical protein
RA	5,798,967	A→C	5.7%	L299W (TTG→TGG)	PP_5077 ←	hypothetical protein
RA	5,807,984	A→G	5.3%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,985	T→C	5.3%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,986	G→A	5.3%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,987	C→T	5.2%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,815,531	C→T	7.8%	intergenic (+15/+76)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,815,536	G→T	8.7%	intergenic (+20/+71)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,815,539	A→C	9.1%	intergenic (+23/+68)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,815,544	A→G	10.0%	intergenic (+28/+63)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,816,917	C→T	15.1%	intergenic (+103/+26)	PP_5092 → / ← pilT	NLP/P60 protein/twitching motility protein
RA	5,819,153	A→T	5.7%	E141V (GAA→GTA)	proI →	pyrroline‑5‑carboxylate reductase
RA	5,824,713	T→A	5.9%	intergenic (+137/+37)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,714	T→A	5.9%	intergenic (+138/+36)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,827,962	A→G	5.1%	intergenic (+164/+35)	mtgA → / ← rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
RA	5,827,966	C→T	5.0%	intergenic (+168/+31)	mtgA → / ← rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
RA	5,827,967	C→G	5.0%	intergenic (+169/+30)	mtgA → / ← rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
RA	5,845,958	A→G	7.2%	intergenic (+30/+61)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,845,963	G→A	7.2%	intergenic (+35/+56)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,845,972	T→C	9.1%	intergenic (+44/+47)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,845,977	C→T	9.2%	intergenic (+49/+42)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,872,021	T→A	12.7%	D211V (GAC→GTC)	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,878,022	A→G	5.8%	intergenic (‑37/+54)	PP_5151 ← / ← PP_5152	hypothetical protein/hypothetical protein
RA	5,883,595	C→G	6.8%	A60G (GCC→GGC)	PP_5157 →	hypothetical protein
RA	5,890,791	A→C	12.1%	intergenic (+79/+41)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,890,792	A→T	11.9%	intergenic (+80/+40)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,890,793	G→T	12.0%	intergenic (+81/+39)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,897,770	A→G	8.6%	intergenic (‑170/+64)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,773	G→A	8.6%	intergenic (‑173/+61)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,778	C→G	11.5%	intergenic (‑178/+56)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,779	G→C	8.2%	intergenic (‑179/+55)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,782	G→C	10.4%	intergenic (‑182/+52)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,783	C→G	8.7%	intergenic (‑183/+51)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,788	T→C	8.6%	intergenic (‑188/+46)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,791	C→T	8.5%	intergenic (‑191/+43)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,903,164	G→T	15.4%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,165	A→C	17.8%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,930,414	T→C	6.0%	K154E (AAG→GAG)	PP_5198 ←	hypothetical protein
RA	5,930,415	G→A	5.9%	L153L (CTC→CTT)	PP_5198 ←	hypothetical protein
RA	5,944,536	A→T	5.2%	intergenic (‑302/+38)	PP_5211 ← / ← PP_5212	ChaC‑related protein/iron‑sulfur‑binding oxidoreductase
RA	5,944,537	A→G	5.2%	intergenic (‑303/+37)	PP_5211 ← / ← PP_5212	ChaC‑related protein/iron‑sulfur‑binding oxidoreductase
RA	5,951,589	T→C	14.3%	Q456Q (CAA→CAG)	ppk ←	polyphosphate kinase
RA	5,951,594	G→A	13.3%	L455L (CTG→TTG)	ppk ←	polyphosphate kinase
RA	5,959,995	A→T	6.9%	noncoding (74/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,959,996	A→T	6.9%	noncoding (73/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,962,273	A→C	6.3%	D390A (GAC→GCC)	lysA‑II →	diaminopimelate decarboxylase
RA	5,962,276	G→T	6.4%	G391V (GGC→GTC)	lysA‑II →	diaminopimelate decarboxylase
RA	5,987,522	G→T	100%	G202C (GGT→TGT)	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,988,809	G→A	24.3%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	19.1%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	18.8%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	18.8%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	18.8%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	18.6%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	21.4%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	22.1%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	22.0%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	22.1%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	22.3%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	21.2%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	14.0%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	15.7%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	15.7%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	19.5%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	19.4%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,995,016	G→A	7.0%	intergenic (+144/+33)	PP_5251 → / ← PP_5252	transporter/hypothetical protein
RA	5,995,018	T→A	7.1%	intergenic (+146/+31)	PP_5251 → / ← PP_5252	transporter/hypothetical protein
RA	5,995,020	T→C	7.0%	intergenic (+148/+29)	PP_5251 → / ← PP_5252	transporter/hypothetical protein
RA	5,997,189:1	+G	7.0%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	5,997,194	Δ1 bp	6.7%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,004,987	T→G	8.8%	intergenic (+25/‑151)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,994	G→C	8.3%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,997	A→T	12.3%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,000	G→C	8.0%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,009,139:1	+G	22.2%	intergenic (+36/+46)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,009,143	T→C	21.1%	intergenic (+40/+42)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,009,144	T→C	21.1%	intergenic (+41/+41)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,009,149	G→A	21.0%	intergenic (+46/+36)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,009,150	G→A	18.2%	intergenic (+47/+35)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,016,877	A→G	5.2%	intergenic (‑193/+34)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,879	C→T	5.3%	intergenic (‑195/+32)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,880	A→G	5.3%	intergenic (‑196/+31)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,882	C→T	5.4%	intergenic (‑198/+29)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,017,238	T→G	5.8%	K32N (AAA→AAC)	PP_5267 ←	cytochrome c5
RA	6,024,044	A→G	5.0%	D156G (GAC→GGC)	yjiR →	transcriptional regulator
RA	6,040,794	T→A	6.4%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein
RA	6,041,127	T→A	9.2%	Q17H (CAA→CAT)	PP_5293 ←	hypothetical protein
RA	6,041,133	G→A	10.6%	I15I (ATC→ATT) ‡	PP_5293 ←	hypothetical protein
RA	6,041,135	T→A	10.5%	I15F (ATC→TTC) ‡	PP_5293 ←	hypothetical protein
RA	6,041,137	T→C	10.5%	E14G (GAA→GGA)	PP_5293 ←	hypothetical protein
RA	6,041,143	T→A	7.8%	N12I (AAT→ATT)	PP_5293 ←	hypothetical protein
RA	6,042,337	G→C	5.7%	E92Q (GAA→CAA) ‡	PP_5295 →	hypothetical protein
RA	6,042,339	A→T	5.8%	E92D (GAA→GAT) ‡	PP_5295 →	hypothetical protein
RA	6,042,341	G→C	5.3%	C93S (TGC→TCC)	PP_5295 →	hypothetical protein
RA	6,060,060	G→A	5.8%	R367H (CGC→CAC)	PP_5311 →	signal transduction protein
RA	6,069,277:1	+C	5.6%	coding (331/897 nt)	PP_5323 ←	M23/M37 family peptidase
RA	6,069,285	A→T	7.2%	L108Q (CTG→CAG)	PP_5323 ←	M23/M37 family peptidase
RA	6,069,288	A→C	7.2%	L107R (CTG→CGG)	PP_5323 ←	M23/M37 family peptidase
RA	6,069,292	Δ1 bp	6.5%	coding (316/897 nt)	PP_5323 ←	M23/M37 family peptidase
RA	6,079,461	G→T	5.7%	intergenic (‑236/‑126)	PP_5330 ← / → PP_5331	MFS transporter/acyl‑CoA thioesterase
RA	6,080,988	T→A	14.3%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,080,989	T→A	14.4%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,083,596	G→A	6.9%	intergenic (‑61/+207)	purE ← / ← PP_5337	5‑(carboxyamino)imidazole ribonucleotide mutase/LysR family transcriptional regulator
RA	6,104,053	T→A	5.8%	intergenic (+31/‑83)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,104,054	T→A	5.7%	intergenic (+32/‑82)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,108,694	G→C	5.9%	A315G (GCC→GGC) ‡	PP_5359 ←	CobW/P47K family protein
RA	6,108,695	C→G	5.9%	A315P (GCC→CCC) ‡	PP_5359 ←	CobW/P47K family protein
RA	6,108,702	C→G	5.7%	A312A (GCG→GCC) ‡	PP_5359 ←	CobW/P47K family protein
RA	6,108,703	G→C	5.7%	A312G (GCG→GGG) ‡	PP_5359 ←	CobW/P47K family protein
RA	6,110,367	C→A	6.9%	L381F (TTG→TTT)	PP_5361 ←	protein P47K
RA	6,130,113	G→C	7.2%	A107G (GCC→GGC)	PP_5378 ←	metal‑binding protein
RA	6,166,470	G→T	7.9%	intergenic (‑229/‑451)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein
RA	6,166,471	T→G	8.8%	intergenic (‑230/‑450)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein
RA	6,166,474	C→A	7.4%	intergenic (‑233/‑447)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein
RA	6,166,475	A→C	7.7%	intergenic (‑234/‑446)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein
RA	6,166,484	T→C	5.9%	intergenic (‑243/‑437)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171355–172965	176306–172967	3–4952	30 [25]	[25] 28	PP_16SA–[PP_5SA]	PP_16SA,PP_23SA,[PP_5SA]
*	*	÷	NC_002947	176652–178395	181723–178397	3–5072	27 [25]	[24] 27	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 77630	69 (1.080)	4 (0.070)	3/242	NT	5.1%	coding (843/933 nt)	fmt	methionyl‑tRNA formyltransferase
	?	NC_002947	= 77663	82 (1.350)					coding (810/933 nt)	fmt	methionyl‑tRNA formyltransferase
*	?	NC_002947	86750 =	53 (0.830)	6 (0.110)	6/222	NT	10.9%	intergenic (‑33/+112)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	86841 =	52 (0.930)					intergenic (‑124/+21)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	117614 =	69 (1.080)	4 (0.070)	4/238	NT	5.6%	coding (471/771 nt)	metQ	methionine ABC transporter substrate‑binding protein
	?	NC_002947	117641 =	71 (1.180)					coding (444/771 nt)	metQ	methionine ABC transporter substrate‑binding protein
*	?	NC_002947	123998 =	81 (1.270)	5 (0.080)	5/246	NT	6.0%	coding (636/774 nt)	znuC	zinc ABC transporter ATP‑binding protein
	?	NC_002947	124030 =	79 (1.270)					coding (604/774 nt)	znuC	zinc ABC transporter ATP‑binding protein
*	?	NC_002947	= 174906	NA (NA)	8 (0.130)	6/244	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	201410 =	68 (1.060)	4 (0.070)	4/242	NT	6.1%	coding (6916/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	205438 =	58 (0.950)					coding (10944/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	225167 =	62 (0.970)	5 (0.080)	5/248	NT	7.1%	coding (494/630 nt)	PP_0173	transcriptional factor‑like protein
	?	NC_002947	225271 =	71 (1.140)					coding (390/630 nt)	PP_0173	transcriptional factor‑like protein
*	?	NC_002947	= 245547	53 (0.830)	3 (0.050)	3/242	NT	5.2%	coding (226/480 nt)	PP_0195	hypothetical protein
	?	NC_002947	= 245591	58 (0.950)					coding (182/480 nt)	PP_0195	hypothetical protein
*	?	NC_002947	254201 =	63 (0.980)	4 (0.070)	4/238	NT	6.3%	coding (916/1731 nt)	PP_0203	dipeptidase
	?	NC_002947	254273 =	60 (1.000)					coding (844/1731 nt)	PP_0203	dipeptidase
*	?	NC_002947	= 279791	48 (0.750)	6 (0.100)	6/244	NT	9.4%	coding (458/669 nt)	sctS	sulfur compound ABC transporter permease
	?	NC_002947	= 279883	70 (1.140)					coding (366/669 nt)	sctS	sulfur compound ABC transporter permease
*	?	NC_002947	301439 =	68 (1.060)	3 (0.050)	3/242	NT	5.0%	coding (358/741 nt)	ompR	two‑component system DNA‑binding response regulator
	?	NC_002947	301496 =	49 (0.800)					coding (415/741 nt)	ompR	two‑component system DNA‑binding response regulator
*	?	NC_002947	= 305768	75 (1.170)	4 (0.060)	4/246	NT	5.2%	coding (198/795 nt)	PP_0251	membrane protein
	?	NC_002947	= 305806	73 (1.180)					coding (160/795 nt)	PP_0251	membrane protein
*	?	NC_002947	319208 =	48 (0.750)	4 (0.060)	4/246	NT	7.7%	coding (534/1815 nt)	PP_0264	sensor histidine kinase
	?	NC_002947	319244 =	49 (0.790)					coding (498/1815 nt)	PP_0264	sensor histidine kinase
*	?	NC_002947	= 324739	58 (0.910)	4 (0.070)	4/240	NT	7.0%	coding (25/1320 nt)	oprQ	outer‑membrane porin D
	?	NC_002947	= 324764	52 (0.860)					coding (50/1320 nt)	oprQ	outer‑membrane porin D
*	?	NC_002947	= 327958	64 (1.000)	4 (0.070)	4/242	NT	6.1%	coding (1292/1368 nt)	PP_0270	sensor histidine kinase
	?	NC_002947	= 327985	63 (1.030)					coding (1265/1368 nt)	PP_0270	sensor histidine kinase
*	?	NC_002947	341408 =	69 (1.080)	5 (0.080)	5/246	NT	7.4%	intergenic (‑302/‑76)	PP_5438/gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
	?	NC_002947	341438 =	59 (0.950)					intergenic (‑332/‑46)	PP_5438/gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
*	?	NC_002947	401314 =	27 (0.420)	9 (0.160)	5/228	NT	21.1%	coding (900/1059 nt)	PP_0334	transposase
	?	NC_002947	401370 =	43 (0.750)					coding (956/1059 nt)	PP_0334	transposase
*	?	NC_002947	427920 =	65 (1.020)	4 (0.070)	4/236	NT	6.2%	intergenic (‑122/+130)	PP_0350/PP_0351	ferrichrome‑iron receptor/transmembrane sensor
	?	NC_002947	427995 =	60 (1.010)					intergenic (‑197/+55)	PP_0350/PP_0351	ferrichrome‑iron receptor/transmembrane sensor
*	?	NC_002947	483679 =	67 (1.050)	4 (0.070)	4/236	NT	7.1%	coding (760/1923 nt)	yeaG	protein kinase
	?	NC_002947	483783 =	43 (0.720)					coding (656/1923 nt)	yeaG	protein kinase
*	?	NC_002947	494427 =	72 (1.130)	4 (0.070)	3/240	NT	5.6%	coding (188/768 nt)	djlA	DnaJ‑like protein DjlA
	?	NC_002947	494470 =	68 (1.120)					coding (231/768 nt)	djlA	DnaJ‑like protein DjlA
*	?	NC_002947	497823 =	75 (1.170)	4 (0.070)	3/240	NT	5.6%	coding (1695/2388 nt)	PP_0409	two‑component system sensor histidine kinase
	?	NC_002947	497875 =	64 (1.060)					coding (1747/2388 nt)	PP_0409	two‑component system sensor histidine kinase
*	?	NC_002947	= 532241	76 (1.190)	4 (0.070)	3/240	NT	5.2%	intergenic (+23/‑130)	PP_0439/PP_t01	hypothetical protein/tRNA‑Tyr
	?	NC_002947	= 532271	73 (1.210)					intergenic (+53/‑100)	PP_0439/PP_t01	hypothetical protein/tRNA‑Tyr
*	?	NC_002947	566276 =	59 (0.920)	3 (0.050)	3/242	NT	5.3%	coding (153/465 nt)	bfr‑I	bacterioferritin
	?	NC_002947	566305 =	52 (0.850)					coding (182/465 nt)	bfr‑I	bacterioferritin
*	?	NC_002947	568013 =	53 (0.830)	3 (0.050)	3/246	NT	6.0%	coding (1483/2835 nt)	uvrA	uvrABC excinuclease protein A
	?	NC_002947	568060 =	42 (0.680)					coding (1436/2835 nt)	uvrA	uvrABC excinuclease protein A
*	?	NC_002947	594185 =	75 (1.170)	4 (0.070)	4/240	NT	5.4%	intergenic (‑46/+64)	oprG/PP_0505	outer membrane protein OprG/hypothetical protein
	?	NC_002947	594217 =	68 (1.120)					intergenic (‑78/+32)	oprG/PP_0505	outer membrane protein OprG/hypothetical protein
*	?	NC_002947	611504 =	NA (NA)	13 (0.220)	12/240	NT	NA	coding (401/966 nt)	PP_0526	transposase
	?	NC_002947	611533 =	NA (NA)					coding (430/966 nt)	PP_0526	transposase
*	?	NC_002947	= 611935	NA (NA)	7 (0.120)	5/236	NT	NA	coding (832/966 nt)	PP_0526	transposase
	?	NC_002947	= 611960	NA (NA)					coding (857/966 nt)	PP_0526	transposase
*	?	NC_002947	735457 =	68 (1.060)	6 (0.100)	5/236	NT	10.0%	coding (118/174 nt)	PP_0627	hypothetical protein
	?	NC_002947	735516 =	45 (0.760)					coding (59/174 nt)	PP_0627	hypothetical protein
*	?	NC_002947	= 741869	NA (NA)	4 (0.070)	3/242	NT	NA	intergenic (+469/‑31)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	= 741902	NA (NA)					coding (3/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	= 743020	NA (NA)	12 (0.200)	11/244	NT	NA	coding (1121/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 743038	NA (NA)					coding (1139/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	744921 =	NA (NA)	42 (0.660)	37/254	NT	87.5%	intergenic (‑586/+45)	PP_0636/PP_0637	cold shock DNA‑binding domain‑containing protein/transposase
	?	NC_002947	748230 =	6 (0.090)					coding (283/819 nt)	PP_5449	hypothetical protein
*	?	NC_002947	= 746192	NA (NA)	5 (0.080)	4/248	NT	NA	coding (307/1533 nt)	PP_0637	transposase
	?	NC_002947	= 746226	NA (NA)					coding (273/1533 nt)	PP_0637	transposase
*	?	NC_002947	= 746960	NA (NA)	39 (0.610)	34/252	NT	83.1%	intergenic (‑87/‑707)	PP_0638/PP_5448	transposase/hypothetical protein
	?	NC_002947	= 748238	8 (0.130)					coding (291/819 nt)	PP_5449	hypothetical protein
*	?	NC_002947	773996 =	47 (0.730)	5 (0.080)	5/242	NT	9.7%	coding (603/1419 nt)	PP_0665	glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	774036 =	48 (0.790)					coding (643/1419 nt)	PP_0665	glyceraldehyde‑3‑phosphate dehydrogenase
*	?	NC_002947	= 780390	66 (1.030)	5 (0.080)	4/242	NT	7.0%	coding (81/954 nt)	PP_0670	bile acid/Na+ symporter family transporter
	?	NC_002947	= 780410	71 (1.160)					coding (61/954 nt)	PP_0670	bile acid/Na+ symporter family transporter
*	?	NC_002947	799772 =	47 (0.730)	3 (0.050)	3/246	NT	5.8%	coding (701/969 nt)	ispB	octaprenyl diphosphate synthase
	?	NC_002947	799809 =	52 (0.840)					coding (664/969 nt)	ispB	octaprenyl diphosphate synthase
*	?	NC_002947	= 800152	55 (0.860)	6 (0.100)	6/244	NT	9.7%	coding (321/969 nt)	ispB	octaprenyl diphosphate synthase
	?	NC_002947	= 800182	59 (0.960)					coding (291/969 nt)	ispB	octaprenyl diphosphate synthase
*	?	NC_002947	830247 =	61 (0.950)	3 (0.050)	3/242	NT	5.0%	coding (622/1098 nt)	PP_0714	PerM family transporter
	?	NC_002947	830295 =	55 (0.900)					coding (670/1098 nt)	PP_0714	PerM family transporter
*	?	NC_002947	867908 =	63 (0.980)	5 (0.080)	5/246	NT	8.5%	intergenic (+6/+171)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	868022 =	46 (0.740)					intergenic (+120/+57)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	872432 =	66 (1.030)	5 (0.080)	3/238	NT	7.2%	coding (730/1272 nt)	PP_0756	hypothetical protein
	?	NC_002947	872492 =	67 (1.120)					coding (670/1272 nt)	PP_0756	hypothetical protein
*	?	NC_002947	876828 =	53 (0.830)	4 (0.070)	4/242	NT	7.2%	coding (331/999 nt)	rsmC	16S rRNA methyltransferase
	?	NC_002947	876899 =	52 (0.850)					coding (260/999 nt)	rsmC	16S rRNA methyltransferase
*	?	NC_002947	= 885134	56 (0.880)	3 (0.050)	3/238	NT	5.2%	coding (1045/2718 nt)	PP_0767	LuxR family transcriptional regulator
	?	NC_002947	= 885159	56 (0.930)					coding (1070/2718 nt)	PP_0767	LuxR family transcriptional regulator
*	?	NC_002947	905039 =	74 (1.160)	4 (0.070)	3/240	NT	5.1%	coding (1298/2160 nt)	PP_0788	hypothetical protein
	?	NC_002947	905081 =	79 (1.310)					coding (1340/2160 nt)	PP_0788	hypothetical protein
*	?	NC_002947	917702 =	55 (0.860)	8 (0.140)	8/232	NT	13.9%	intergenic (‑136/+63)	PP_0798/opdC	GGDEF domain‑containing protein/histidine‑specific outer membrane porin D
	?	NC_002947	917740 =	49 (0.840)					intergenic (‑174/+25)	PP_0798/opdC	GGDEF domain‑containing protein/histidine‑specific outer membrane porin D
*	?	NC_002947	967108 =	55 (0.860)	3 (0.050)	3/234	NT	5.9%	coding (74/297 nt)	PP_0829	hypothetical protein
	?	NC_002947	967158 =	45 (0.760)					coding (124/297 nt)	PP_0829	hypothetical protein
*	?	NC_002947	= 967488	42 (0.660)	5 (0.080)	5/242	NT	9.7%	coding (334/480 nt)	PP_0830	acetyltransferase
	?	NC_002947	= 967512	53 (0.870)					coding (310/480 nt)	PP_0830	acetyltransferase
*	?	NC_002947	= 991688	71 (1.110)	4 (0.070)	4/238	NT	5.3%	coding (310/1464 nt)	der	GTPase Der
	?	NC_002947	= 991712	76 (1.270)					coding (334/1464 nt)	der	GTPase Der
*	?	NC_002947	997094 =	61 (0.950)	4 (0.070)	4/244	NT	6.1%	coding (502/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
	?	NC_002947	997127 =	65 (1.060)					coding (469/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
*	?	NC_002947	= 1004713	47 (0.730)	3 (0.050)	3/242	NT	6.1%	coding (738/987 nt)	PP_0866	transmembrane sensor
	?	NC_002947	= 1004745	47 (0.770)					coding (770/987 nt)	PP_0866	transmembrane sensor
*	?	NC_002947	= 1015201	49 (0.770)	3 (0.050)	3/238	NT	5.9%	coding (1040/1431 nt)	PP_0875	hypothetical protein
	?	NC_002947	= 1015224	50 (0.830)					coding (1017/1431 nt)	PP_0875	hypothetical protein
*	?	NC_002947	= 1032824	57 (0.890)	4 (0.070)	3/240	NT	5.8%	coding (918/1137 nt)	PP_0889	hypothetical protein
	?	NC_002947	= 1032893	75 (1.240)					coding (987/1137 nt)	PP_0889	hypothetical protein
*	?	NC_002947	1036779 =	61 (0.950)	3 (0.050)	3/240	NT	5.4%	coding (484/591 nt)	PP_0895	hypothetical protein
	?	NC_002947	1036839 =	48 (0.790)					coding (544/591 nt)	PP_0895	hypothetical protein
*	?	NC_002947	= 1037793	44 (0.690)	7 (0.130)	7/208	NT	15.0%	intergenic (+38/+78)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
	?	NC_002947	= 1037825	43 (0.820)					intergenic (+70/+46)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
*	?	NC_002947	= 1072763	84 (1.310)	4 (0.060)	4/246	NT	5.1%	coding (630/1446 nt)	gatB	aspartyl/glutamyl‑tRNA(Asn/Gln) amidotransferase subunit B
	?	NC_002947	= 1072808	68 (1.100)					coding (585/1446 nt)	gatB	aspartyl/glutamyl‑tRNA(Asn/Gln) amidotransferase subunit B
*	?	NC_002947	1114862 =	38 (0.590)	4 (0.070)	4/240	NT	9.0%	intergenic (‑56/+123)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114954 =	45 (0.740)					intergenic (‑148/+31)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	1149459 =	56 (0.880)	4 (0.070)	4/240	NT	6.6%	coding (295/513 nt)	PP_1008	RNA polymerase subunit sigma‑24
	?	NC_002947	1149519 =	61 (1.010)					coding (235/513 nt)	PP_1008	RNA polymerase subunit sigma‑24
*	?	NC_002947	= 1200751	48 (0.750)	4 (0.070)	4/242	NT	7.9%	coding (407/456 nt)	gspG	protein secretion protein
	?	NC_002947	= 1200763	47 (0.770)					coding (419/456 nt)	gspG	protein secretion protein
*	?	NC_002947	1205682 =	56 (0.880)	4 (0.060)	4/246	NT	6.6%	coding (80/546 nt)	PP_1057	PadR family transcriptional regulator
	?	NC_002947	1205719 =	59 (0.950)					coding (43/546 nt)	PP_1057	PadR family transcriptional regulator
*	?	NC_002947	1229440 =	58 (0.910)	3 (0.050)	3/248	NT	5.2%	coding (2620/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein
	?	NC_002947	1229467 =	53 (0.850)					coding (2647/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein
*	?	NC_002947	1296784 =	NA (NA)	9 (0.150)	5/240	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296822 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1296790	NA (NA)	5 (0.080)	5/240	NT	NA	intergenic (‑543/‑23)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	= 1296814	NA (NA)					coding (2/1329 nt)	PP_1133	transposase
*	?	NC_002947	1297922 =	NA (NA)	4 (0.070)	4/240	NT	NA	coding (1110/1329 nt)	PP_1133	transposase
	?	NC_002947	1297972 =	NA (NA)					coding (1160/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1311719	48 (0.750)	8 (0.140)	7/228	NT	17.6%	intergenic (‑187/+91)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	= 1311778	32 (0.560)					intergenic (‑246/+32)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
*	?	NC_002947	1314117 =	56 (0.880)	4 (0.060)	4/246	NT	7.1%	coding (540/2847 nt)	rapA	RNA polymerase‑associated protein RapA
	?	NC_002947	1314174 =	51 (0.820)					coding (483/2847 nt)	rapA	RNA polymerase‑associated protein RapA
*	?	NC_002947	= 1332628	83 (1.300)	4 (0.070)	4/238	NT	5.1%	intergenic (+209/‑1047)	PP_1157/PP_1159	acetolactate synthase/membrane protein
	?	NC_002947	= 1332657	71 (1.180)					intergenic (+238/‑1018)	PP_1157/PP_1159	acetolactate synthase/membrane protein
*	?	NC_002947	1443104 =	30 (0.470)	4 (0.080)	4/204	NT	17.4%	intergenic (‑42/+134)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
	?	NC_002947	1443172 =	14 (0.270)					intergenic (‑110/+66)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
*	?	NC_002947	1487006 =	62 (0.970)	3 (0.060)	3/194	NT	7.7%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487096 =	25 (0.510)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	= 1499458	27 (0.420)	6 (0.100)	5/250	NT	18.3%	intergenic (+35/‑129)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 1499495	27 (0.430)					intergenic (+72/‑92)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	1540365 =	53 (0.830)	4 (0.060)	4/246	NT	6.9%	coding (205/2031 nt)	PP_1350	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	1540406 =	56 (0.900)					coding (164/2031 nt)	PP_1350	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 1613788	60 (0.940)	4 (0.070)	4/238	NT	6.2%	coding (818/1683 nt)	ushA	5'‑nucleotidase/2',3'‑cyclic phosphodiesterase
	?	NC_002947	= 1613834	65 (1.080)					coding (772/1683 nt)	ushA	5'‑nucleotidase/2',3'‑cyclic phosphodiesterase
*	?	NC_002947	1641732 =	59 (0.920)	4 (0.070)	4/242	NT	6.7%	intergenic (‑42/+48)	cmoA/PP_1442	tRNA 5‑methoxyuridine(34)/uridine‑5‑oxyacetic acid(34) metyltransferase CmoA/hypothetical protein
	?	NC_002947	1641764 =	56 (0.920)					intergenic (‑74/+16)	cmoA/PP_1442	tRNA 5‑methoxyuridine(34)/uridine‑5‑oxyacetic acid(34) metyltransferase CmoA/hypothetical protein
*	?	NC_002947	1652057 =	45 (0.700)	3 (0.050)	3/238	NT	6.1%	coding (612/636 nt)	PP_1448	membrane protein
	?	NC_002947	1652119 =	51 (0.850)					intergenic (+38/+123)	PP_1448/PP_1449	membrane protein/hypothetical protein
*	?	NC_002947	1664220 =	52 (0.810)	3 (0.050)	3/246	NT	5.5%	coding (171/1299 nt)	yhjE	metabolite transport protein YhjE
	?	NC_002947	1664260 =	52 (0.840)					coding (131/1299 nt)	yhjE	metabolite transport protein YhjE
*	?	NC_002947	1675701 =	44 (0.690)	3 (0.050)	3/240	NT	7.0%	coding (868/1305 nt)	hom	homoserine dehydrogenase
	?	NC_002947	1675742 =	38 (0.630)					coding (909/1305 nt)	hom	homoserine dehydrogenase
*	?	NC_002947	1705453 =	60 (0.940)	4 (0.070)	4/242	NT	7.0%	coding (818/1329 nt)	PP_1499	hypothetical protein
	?	NC_002947	1705498 =	49 (0.800)					coding (863/1329 nt)	PP_1499	hypothetical protein
*	?	NC_002947	= 1714475	63 (0.980)	4 (0.070)	4/234	NT	6.1%	coding (319/870 nt)	PP_1509	hypothetical protein
	?	NC_002947	= 1714500	65 (1.100)					coding (344/870 nt)	PP_1509	hypothetical protein
*	?	NC_002947	= 1720863	55 (0.860)	5 (0.080)	5/236	NT	8.6%	coding (603/1101 nt)	PP_1516	RND membrane fusion protein
	?	NC_002947	= 1720875	55 (0.930)					coding (615/1101 nt)	PP_1516	RND membrane fusion protein
*	?	NC_002947	= 1752726	54 (0.840)	3 (0.050)	3/242	NT	5.2%	coding (133/423 nt)	PP_1554	hypothetical protein
	?	NC_002947	= 1752754	57 (0.940)					coding (161/423 nt)	PP_1554	hypothetical protein
*	?	NC_002947	1787485 =	66 (1.030)	3 (0.050)	3/246	NT	5.1%	coding (271/744 nt)	pyrH	uridylate kinase
	?	NC_002947	1787530 =	48 (0.770)					coding (316/744 nt)	pyrH	uridylate kinase
*	?	NC_002947	= 1799873	46 (0.720)	7 (0.130)	7/208	NT	13.0%	intergenic (+43/‑144)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
	?	NC_002947	= 1799915	56 (1.070)					intergenic (+85/‑102)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
*	?	NC_002947	1809048 =	65 (1.020)	4 (0.070)	4/238	NT	6.5%	coding (99/1290 nt)	eno	enolase
	?	NC_002947	1809097 =	55 (0.920)					coding (148/1290 nt)	eno	enolase
*	?	NC_002947	= 1811611	48 (0.750)	5 (0.080)	5/244	NT	9.2%	coding (807/897 nt)	PP_1615	LysR family transcriptional regulator
	?	NC_002947	= 1811657	53 (0.860)					coding (761/897 nt)	PP_1615	LysR family transcriptional regulator
*	?	NC_002947	= 1819292	69 (1.080)	4 (0.070)	4/234	NT	5.7%	coding (537/1008 nt)	rpoS	RNA polymerase sigma S factor
	?	NC_002947	= 1819337	70 (1.190)					coding (582/1008 nt)	rpoS	RNA polymerase sigma S factor
*	?	NC_002947	= 1838343	58 (0.910)	5 (0.080)	5/234	NT	9.3%	coding (228/414 nt)	PP_1643	membrane protein
	?	NC_002947	= 1838362	44 (0.750)					coding (209/414 nt)	PP_1643	membrane protein
*	?	NC_002947	= 1841476	46 (0.720)	6 (0.100)	5/238	NT	12.0%	coding (527/1029 nt)	ldhA	D‑lactate dehydrogenase
	?	NC_002947	= 1841502	45 (0.750)					coding (501/1029 nt)	ldhA	D‑lactate dehydrogenase
*	?	NC_002947	= 1855815	46 (0.720)	3 (0.050)	3/244	NT	6.2%	coding (827/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	= 1855848	47 (0.760)					coding (860/1341 nt)	PP_1659	hypothetical protein
*	?	NC_002947	1873354 =	63 (0.980)	4 (0.070)	4/242	NT	6.6%	coding (183/522 nt)	cobP	adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase
	?	NC_002947	1873401 =	53 (0.870)					coding (230/522 nt)	cobP	adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase
*	?	NC_002947	1874240 =	66 (1.030)	6 (0.100)	4/238	NT	8.6%	coding (551/1056 nt)	cobU	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
	?	NC_002947	1874333 =	65 (1.080)					coding (644/1056 nt)	cobU	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
*	?	NC_002947	1889257 =	63 (0.980)	3 (0.050)	3/238	NT	5.4%	coding (1016/3480 nt)	PP_1695	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
	?	NC_002947	1889310 =	47 (0.780)					coding (963/3480 nt)	PP_1695	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 1948954	45 (0.700)	4 (0.070)	4/236	NT	7.5%	coding (701/1746 nt)	PP_1749	acetyltransferase
	?	NC_002947	= 1948986	57 (0.960)					coding (669/1746 nt)	PP_1749	acetyltransferase
*	?	NC_002947	2048794 =	71 (1.110)	6 (0.110)	4/220	NT	9.9%	intergenic (+33/+106)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	2048885 =	48 (0.870)					intergenic (+124/+15)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	2057800 =	41 (0.640)	4 (0.080)	3/206	NT	14.5%	intergenic (+16/+112)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2057888 =	14 (0.270)					intergenic (+104/+24)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	= 2059591	56 (0.880)	4 (0.070)	4/236	NT	7.2%	intergenic (+25/+99)	PP_1835/PP_1836	hypothetical protein/ZIP family metal transporter
	?	NC_002947	= 2059654	51 (0.860)					intergenic (+88/+36)	PP_1835/PP_1836	hypothetical protein/ZIP family metal transporter
*	?	NC_002947	= 2085435	59 (0.920)	5 (0.080)	4/238	NT	10.2%	intergenic (+144/‑451)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	= 2087757	33 (0.550)					intergenic (+570/+348)	PP_1865/aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
*	?	NC_002947	2086243 =	NA (NA)	5 (0.080)	5/238	NT	NA	coding (358/1302 nt)	PP_1865	transposase
	?	NC_002947	2086305 =	NA (NA)					coding (420/1302 nt)	PP_1865	transposase
*	?	NC_002947	2095628 =	55 (0.860)	4 (0.070)	4/238	NT	7.0%	coding (850/1212 nt)	alaA	glutamate‑pyruvate aminotransferase
	?	NC_002947	2095675 =	54 (0.900)					coding (803/1212 nt)	alaA	glutamate‑pyruvate aminotransferase
*	?	NC_002947	= 2099957	39 (0.610)	8 (0.140)	6/234	NT	17.6%	intergenic (‑68/‑137)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2100056	39 (0.660)					intergenic (‑167/‑38)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	2129565 =	73 (1.140)	5 (0.080)	4/252	NT	6.0%	coding (82/1095 nt)	PP_1888	fimbrial protein
	?	NC_002947	2129602 =	83 (1.310)					coding (45/1095 nt)	PP_1888	fimbrial protein
*	?	NC_002947	2167599 =	59 (0.920)	3 (0.050)	3/244	NT	5.5%	coding (663/1164 nt)	PP_1921	hypothetical protein
	?	NC_002947	2167641 =	47 (0.760)					coding (705/1164 nt)	PP_1921	hypothetical protein
*	?	NC_002947	= 2231687	57 (0.890)	3 (0.050)	3/242	NT	5.1%	coding (904/1014 nt)	PP_1969	molybdenum cofactor biosynthesis protein A
	?	NC_002947	= 2231712	57 (0.940)					coding (929/1014 nt)	PP_1969	molybdenum cofactor biosynthesis protein A
*	?	NC_002947	2260171 =	68 (1.060)	4 (0.070)	4/244	NT	6.6%	coding (759/2736 nt)	fimV	motility protein FimV
	?	NC_002947	2260221 =	47 (0.760)					coding (809/2736 nt)	fimV	motility protein FimV
*	?	NC_002947	2273507 =	55 (0.860)	3 (0.050)	3/244	NT	5.7%	coding (860/1041 nt)	PP_2004	AraC family transcriptional regulator
	?	NC_002947	2273535 =	47 (0.760)					coding (832/1041 nt)	PP_2004	AraC family transcriptional regulator
*	?	NC_002947	2295789 =	51 (0.800)	4 (0.070)	4/234	NT	8.5%	intergenic (+35/+98)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	5594167 =	39 (0.660)					intergenic (‑114/+31)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	2301453 =	0 (0.000)	59 (0.940)	48/248	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	43 (0.680)	36/250	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 2352340	45 (0.700)	3 (0.050)	3/240	NT	6.4%	coding (925/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter
	?	NC_002947	= 2352356	45 (0.740)					coding (909/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter
*	?	NC_002947	= 2404594	50 (0.780)	3 (0.050)	3/244	NT	5.9%	intergenic (+12/‑62)	PP_2106/PP_2107	ammonium transporter/hypothetical protein
	?	NC_002947	= 2404646	48 (0.780)					intergenic (+64/‑10)	PP_2106/PP_2107	ammonium transporter/hypothetical protein
*	?	NC_002947	2412849 =	52 (0.810)	6 (0.100)	3/238	NT	10.6%	intergenic (+113/‑308)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
	?	NC_002947	2412942 =	53 (0.880)					intergenic (+206/‑215)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
*	?	NC_002947	2505327 =	43 (0.670)	3 (0.050)	3/240	NT	7.5%	coding (1114/1146 nt)	yliI	aldose sugar dehydrogenase
	?	NC_002947	2505368 =	33 (0.550)					intergenic (+9/‑33)	yliI/PP_2199	aldose sugar dehydrogenase/hypothetical protein
*	?	NC_002947	2506599 =	52 (0.810)	4 (0.070)	4/240	NT	7.6%	coding (79/582 nt)	PP_2200	hypothetical protein
	?	NC_002947	2506640 =	48 (0.790)					coding (120/582 nt)	PP_2200	hypothetical protein
*	?	NC_002947	2539352 =	59 (0.920)	4 (0.070)	4/240	NT	6.6%	coding (788/951 nt)	PP_2231	DMT superfamily permease
	?	NC_002947	2539380 =	58 (0.960)					coding (760/951 nt)	PP_2231	DMT superfamily permease
*	?	NC_002947	= 2555263	60 (0.940)	4 (0.070)	4/242	NT	6.9%	coding (1244/1881 nt)	PP_2240	ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 2555292	51 (0.840)					coding (1273/1881 nt)	PP_2240	ABC transporter permease/ATP‑binding protein
*	?	NC_002947	2581886 =	65 (1.020)	4 (0.070)	4/242	NT	5.7%	coding (238/801 nt)	PP_2263	sugar ABC transporter permease
	?	NC_002947	2581943 =	71 (1.160)					coding (295/801 nt)	PP_2263	sugar ABC transporter permease
*	?	NC_002947	= 2638887	63 (0.980)	4 (0.070)	4/240	NT	6.4%	coding (216/369 nt)	PP_2309	hypothetical protein
	?	NC_002947	= 2638930	58 (0.960)					coding (173/369 nt)	PP_2309	hypothetical protein
*	?	NC_002947	= 2657078	52 (0.810)	4 (0.070)	4/242	NT	7.4%	coding (534/1341 nt)	pabB	aminodeoxychorismate synthase/para‑aminobenzoate synthase multi‑enzyme complex
	?	NC_002947	= 2657130	50 (0.820)					coding (482/1341 nt)	pabB	aminodeoxychorismate synthase/para‑aminobenzoate synthase multi‑enzyme complex
*	?	NC_002947	2660031 =	70 (1.090)	6 (0.100)	5/236	NT	8.4%	coding (305/1536 nt)	PP_2331	membrane protein
	?	NC_002947	2660069 =	65 (1.090)					coding (267/1536 nt)	PP_2331	membrane protein
*	?	NC_002947	2701995 =	48 (0.750)	3 (0.050)	3/242	NT	6.5%	coding (645/804 nt)	dkgB	2,5‑diketo‑D‑gluconate reductase B
	?	NC_002947	2702031 =	40 (0.660)					coding (609/804 nt)	dkgB	2,5‑diketo‑D‑gluconate reductase B
*	?	NC_002947	= 2792732	44 (0.690)	4 (0.060)	4/246	NT	7.7%	coding (62/240 nt)	PP_5524	hypothetical protein
	?	NC_002947	= 2792790	53 (0.860)					coding (120/240 nt)	PP_5524	hypothetical protein
*	?	NC_002947	2856680 =	51 (0.800)	3 (0.050)	3/238	NT	6.0%	coding (52/165 nt)	PP_2509	hypothetical protein
	?	NC_002947	2856723 =	46 (0.770)					coding (9/165 nt)	PP_2509	hypothetical protein
*	?	NC_002947	2881706 =	53 (0.830)	3 (0.050)	3/240	NT	5.5%	coding (306/624 nt)	PP_2536	glutathione S‑transferase family protein
	?	NC_002947	2881758 =	53 (0.880)					coding (254/624 nt)	PP_2536	glutathione S‑transferase family protein
*	?	NC_002947	= 2882966	42 (0.660)	3 (0.050)	3/240	NT	6.5%	coding (375/723 nt)	PP_2538	hypothetical protein
	?	NC_002947	= 2883012	46 (0.760)					coding (421/723 nt)	PP_2538	hypothetical protein
*	?	NC_002947	= 2910557	55 (0.860)	4 (0.070)	4/240	NT	6.8%	intergenic (‑120/‑424)	aprDA/PP_2561	alkaline protease secretion ABC transporter ATP‑binding protein/hemolysin‑type calcium‑binding bacteriocin
	?	NC_002947	= 2910573	58 (0.960)					intergenic (‑136/‑408)	aprDA/PP_2561	alkaline protease secretion ABC transporter ATP‑binding protein/hemolysin‑type calcium‑binding bacteriocin
*	?	NC_002947	= 2912407	59 (0.920)	7 (0.120)	5/236	NT	10.2%	coding (1427/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
	?	NC_002947	= 2912439	69 (1.160)					coding (1459/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
*	?	NC_002947	2948802 =	60 (0.940)	5 (0.080)	4/240	NT	8.6%	coding (280/591 nt)	PP_2582	heme oxygenase
	?	NC_002947	2948842 =	49 (0.810)					coding (240/591 nt)	PP_2582	heme oxygenase
*	?	NC_002947	2957557 =	48 (0.750)	3 (0.050)	3/236	NT	6.1%	coding (317/1494 nt)	PP_2589	aldehyde dehydrogenase family protein
	?	NC_002947	2957615 =	48 (0.810)					coding (375/1494 nt)	PP_2589	aldehyde dehydrogenase family protein
*	?	NC_002947	= 2968028	37 (0.580)	4 (0.060)	4/248	NT	9.7%	coding (386/1794 nt)	PP_2596	ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 2968071	38 (0.610)					coding (343/1794 nt)	PP_2596	ABC transporter permease/ATP‑binding protein
*	?	NC_002947	= 2971564	54 (0.840)	3 (0.050)	3/242	NT	5.5%	coding (1903/2391 nt)	PP_2599	chemotaxis sensory transducer family protein
	?	NC_002947	= 2971584	52 (0.850)					coding (1923/2391 nt)	PP_2599	chemotaxis sensory transducer family protein
*	?	NC_002947	= 2987610	NA (NA)	4 (0.070)	4/240	NT	NA	coding (789/2991 nt)	PP_2612	membrane protein
	?	NC_002947	= 2987639	NA (NA)					coding (760/2991 nt)	PP_2612	membrane protein
*	?	NC_002947	= 3004980	60 (0.940)	4 (0.070)	4/242	NT	6.3%	coding (1561/3621 nt)	PP_2627	membrane protein
	?	NC_002947	= 3005019	61 (1.000)					coding (1600/3621 nt)	PP_2627	membrane protein
*	?	NC_002947	3020901 =	38 (0.590)	4 (0.070)	4/240	NT	9.3%	coding (1439/3519 nt)	PP_2638	cellulose synthase operon protein C
	?	NC_002947	3020955 =	42 (0.690)					coding (1493/3519 nt)	PP_2638	cellulose synthase operon protein C
*	?	NC_002947	3027462 =	51 (0.800)	4 (0.070)	3/238	NT	7.9%	coding (827/1491 nt)	PP_2642	GntR family transcriptional regulator
	?	NC_002947	3027540 =	46 (0.770)					coding (905/1491 nt)	PP_2642	GntR family transcriptional regulator
*	?	NC_002947	= 3030269	57 (0.890)	4 (0.070)	4/242	NT	6.7%	intergenic (+269/‑425)	pcaY/mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
	?	NC_002947	= 3030292	57 (0.940)					intergenic (+292/‑402)	pcaY/mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
*	?	NC_002947	3030422 =	64 (1.000)	6 (0.100)	4/240	NT	8.9%	intergenic (+422/‑272)	pcaY/mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
	?	NC_002947	3030465 =	62 (1.030)					intergenic (+465/‑229)	pcaY/mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
*	?	NC_002947	= 3054450	43 (0.670)	5 (0.080)	4/242	NT	10.1%	coding (76/561 nt)	PP_2666	hypothetical protein
	?	NC_002947	= 3054465	48 (0.790)					coding (61/561 nt)	PP_2666	hypothetical protein
*	?	NC_002947	= 3075225	47 (0.730)	3 (0.050)	3/246	NT	6.0%	intergenic (+120/+105)	PP_2684/PP_2685	membrane protein/hypothetical protein
	?	NC_002947	= 3075274	48 (0.770)					intergenic (+169/+56)	PP_2684/PP_2685	membrane protein/hypothetical protein
*	?	NC_002947	3094220 =	36 (0.560)	3 (0.050)	3/240	NT	6.9%	intergenic (‑135/‑239)	PP_2702/PP_2703	porin/MFS transporter
	?	NC_002947	3094272 =	47 (0.780)					intergenic (‑187/‑187)	PP_2702/PP_2703	porin/MFS transporter
*	?	NC_002947	3174829 =	57 (0.890)	4 (0.070)	4/236	NT	7.9%	coding (130/2610 nt)	PP_2787	transporter
	?	NC_002947	3174928 =	40 (0.670)					coding (229/2610 nt)	PP_2787	transporter
*	?	NC_002947	= 3293731	67 (1.050)	5 (0.080)	4/246	NT	7.4%	coding (3015/3675 nt)	PP_2893	hypothetical protein
	?	NC_002947	= 3293766	61 (0.980)					coding (3050/3675 nt)	PP_2893	hypothetical protein
*	?	NC_002947	3336525 =	46 (0.720)	3 (0.050)	3/242	NT	6.3%	coding (71/843 nt)	yghU	GSH‑dependent disulfide bond oxidoreductase
	?	NC_002947	3336564 =	45 (0.740)					coding (32/843 nt)	yghU	GSH‑dependent disulfide bond oxidoreductase
*	?	NC_002947	3395975 =	52 (0.810)	6 (0.100)	4/244	NT	11.1%	coding (137/456 nt)	PP_3000	MaoC domain‑containing protein
	?	NC_002947	3396024 =	46 (0.750)					coding (186/456 nt)	PP_3000	MaoC domain‑containing protein
*	?	NC_002947	3444544 =	46 (0.720)	3 (0.050)	3/246	NT	5.9%	coding (24/846 nt)	gpU	tail formation protein
	?	NC_002947	3444599 =	52 (0.840)					coding (79/846 nt)	gpU	tail formation protein
*	?	NC_002947	= 3464280	32 (0.500)	3 (0.060)	3/206	NT	10.2%	coding (78/1929 nt)	PP_3078	ABC transporter substrate‑binding protein
	?	NC_002947	= 3464319	27 (0.520)					coding (39/1929 nt)	PP_3078	ABC transporter substrate‑binding protein
*	?	NC_002947	= 3465811	60 (0.940)	4 (0.060)	4/246	NT	6.1%	intergenic (‑17/+230)	aroF‑II/PP_mr39	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase/P15 ncRNA
	?	NC_002947	= 3465839	66 (1.070)					intergenic (‑45/+202)	aroF‑II/PP_mr39	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase/P15 ncRNA
*	?	NC_002947	3512801 =	57 (0.890)	6 (0.100)	3/242	NT	10.4%	coding (1469/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	3512837 =	49 (0.800)					coding (1505/4158 nt)	PP_3108	rhs family protein
*	?	NC_002947	3566966 =	60 (0.940)	3 (0.050)	3/240	NT	5.6%	coding (569/1050 nt)	PP_3149	AraC family transcriptional regulator
	?	NC_002947	3567047 =	44 (0.730)					coding (650/1050 nt)	PP_3149	AraC family transcriptional regulator
*	?	NC_002947	= 3591993	71 (1.110)	7 (0.110)	6/242	NT	9.3%	coding (41/912 nt)	PP_3170	LysR family transcriptional regulator
	?	NC_002947	= 3592039	69 (1.130)					coding (87/912 nt)	PP_3170	LysR family transcriptional regulator
*	?	NC_002947	3604849 =	47 (0.730)	4 (0.070)	4/244	NT	8.2%	coding (69/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein
	?	NC_002947	3604934 =	45 (0.730)					coding (154/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein
*	?	NC_002947	3655460 =	52 (0.810)	4 (0.070)	4/234	NT	7.6%	coding (933/1620 nt)	PP_3220	ABC transporter ATP‑binding protein
	?	NC_002947	3655526 =	50 (0.850)					coding (867/1620 nt)	PP_3220	ABC transporter ATP‑binding protein
*	?	NC_002947	= 3694376	49 (0.770)	4 (0.070)	4/240	NT	8.2%	coding (1792/2502 nt)	ligD	DNA ligase D
	?	NC_002947	= 3694424	43 (0.710)					coding (1744/2502 nt)	ligD	DNA ligase D
*	?	NC_002947	= 3711204	69 (1.080)	5 (0.080)	3/244	NT	7.4%	coding (487/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
	?	NC_002947	= 3711273	58 (0.940)					coding (418/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
*	?	NC_002947	3717880 =	42 (0.660)	4 (0.070)	4/242	NT	9.3%	coding (713/792 nt)	paaG	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
	?	NC_002947	3717917 =	38 (0.620)					coding (676/792 nt)	paaG	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
*	?	NC_002947	3748318 =	55 (0.860)	6 (0.100)	6/244	NT	10.1%	coding (443/1746 nt)	kefB‑II	glutathione‑regulated potassium/H+ antiporter
	?	NC_002947	3748348 =	54 (0.880)					coding (413/1746 nt)	kefB‑II	glutathione‑regulated potassium/H+ antiporter
*	?	NC_002947	3759787 =	47 (0.730)	4 (0.070)	4/242	NT	7.9%	coding (420/975 nt)	folEB	GTP cyclohydrolase I
	?	NC_002947	3759828 =	49 (0.800)					coding (461/975 nt)	folEB	GTP cyclohydrolase I
*	?	NC_002947	= 3806509	69 (1.080)	6 (0.100)	4/244	NT	7.7%	coding (1125/2544 nt)	PP_3364	two‑component system response regulator
	?	NC_002947	= 3806548	77 (1.250)					coding (1164/2544 nt)	PP_3364	two‑component system response regulator
*	?	NC_002947	3838238 =	31 (0.480)	3 (0.050)	3/236	NT	8.1%	coding (1833/2673 nt)	PP_3388	hypothetical protein
	?	NC_002947	3838308 =	39 (0.660)					coding (1903/2673 nt)	PP_3388	hypothetical protein
*	?	NC_002947	= 3841612	48 (0.750)	5 (0.080)	5/240	NT	9.0%	coding (1273/1317 nt)	PP_3391	tartrate MFS transporter
	?	NC_002947	= 3841638	56 (0.930)					coding (1247/1317 nt)	PP_3391	tartrate MFS transporter
*	?	NC_002947	= 3886896	51 (0.800)	5 (0.080)	4/244	NT	7.9%	coding (961/2118 nt)	PP_3430	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3886952	67 (1.090)					coding (905/2118 nt)	PP_3430	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	3914670 =	54 (0.840)	4 (0.070)	4/242	NT	7.0%	coding (117/702 nt)	PP_3454	transcriptional regulator
	?	NC_002947	3914706 =	55 (0.900)					coding (81/702 nt)	PP_3454	transcriptional regulator
*	?	NC_002947	= 3914675	52 (0.810)	3 (0.050)	3/242	NT	5.4%	coding (112/702 nt)	PP_3454	transcriptional regulator
	?	NC_002947	= 3914699	55 (0.900)					coding (88/702 nt)	PP_3454	transcriptional regulator
*	?	NC_002947	3943735 =	50 (0.780)	3 (0.050)	3/242	NT	6.2%	coding (158/1866 nt)	PP_3478	secretion protein
	?	NC_002947	3943778 =	43 (0.710)					coding (115/1866 nt)	PP_3478	secretion protein
*	?	NC_002947	3953986 =	66 (1.030)	4 (0.060)	4/246	NT	5.5%	coding (537/1977 nt)	PP_5606	YVTN beta‑propeller repeat‑containing protein
	?	NC_002947	3954065 =	73 (1.180)					coding (458/1977 nt)	PP_5606	YVTN beta‑propeller repeat‑containing protein
*	?	NC_002947	= 3969591	NA (NA)	3 (0.050)	3/240	NT	NA	coding (226/321 nt)	PP_3499	transposase
	?	NC_002947	= 3969615	NA (NA)					coding (250/321 nt)	PP_3499	transposase
*	?	NC_002947	= 3970106	NA (NA)	4 (0.070)	3/240	NT	NA	coding (25/1536 nt)	PP_3501	transposase
	?	NC_002947	= 3970164	NA (NA)					coding (83/1536 nt)	PP_3501	transposase
*	?	NC_002947	= 3971387	NA (NA)	6 (0.100)	4/246	NT	NA	coding (1306/1536 nt)	PP_3501	transposase
	?	NC_002947	= 3971438	NA (NA)					coding (1357/1536 nt)	PP_3501	transposase
*	?	NC_002947	= 3995582	54 (0.840)	4 (0.070)	3/240	NT	6.8%	coding (226/423 nt)	PP_3522	hypothetical protein
	?	NC_002947	= 3995660	58 (0.960)					coding (148/423 nt)	PP_3522	hypothetical protein
*	?	NC_002947	4017940 =	52 (0.810)	3 (0.050)	3/238	NT	5.8%	coding (375/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4017980 =	49 (0.820)					coding (415/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 4030942	38 (0.590)	3 (0.050)	3/238	NT	5.9%	coding (605/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 4031001	60 (1.000)					coding (664/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
*	?	NC_002947	4059604 =	64 (1.000)	3 (0.050)	3/238	NT	5.2%	coding (1295/1638 nt)	pgm	phosphoglucomutase
	?	NC_002947	4059694 =	49 (0.820)					coding (1205/1638 nt)	pgm	phosphoglucomutase
*	?	NC_002947	4089876 =	64 (1.000)	6 (0.100)	5/234	NT	9.2%	intergenic (+31/‑74)	kdgD/gudP	5‑dehydro‑4‑deoxyglucarate dehydratase/glucarate transporter
	?	NC_002947	4089901 =	59 (1.000)					intergenic (+56/‑49)	kdgD/gudP	5‑dehydro‑4‑deoxyglucarate dehydratase/glucarate transporter
*	?	NC_002947	4095078 =	66 (1.030)	5 (0.080)	5/244	NT	7.8%	coding (406/765 nt)	PP_3603	GntR family transcriptional regulator
	?	NC_002947	4095123 =	55 (0.890)					coding (361/765 nt)	PP_3603	GntR family transcriptional regulator
*	?	NC_002947	4164673 =	59 (0.920)	3 (0.050)	3/244	NT	5.2%	intergenic (+23/+94)	PP_3665/PP_3666	AraC family transcriptional regulator/MHS family metabolite MFS transporter
	?	NC_002947	4164757 =	53 (0.860)					intergenic (+107/+10)	PP_3665/PP_3666	AraC family transcriptional regulator/MHS family metabolite MFS transporter
*	?	NC_002947	4202298 =	57 (0.890)	4 (0.060)	4/246	NT	7.3%	coding (5478/6624 nt)	PP_3691	DNA helicase‑related protein
	?	NC_002947	4202318 =	47 (0.760)					coding (5458/6624 nt)	PP_3691	DNA helicase‑related protein
*	?	NC_002947	= 4210980	61 (0.950)	7 (0.120)	7/240	NT	11.5%	coding (97/285 nt)	PP_5621	hypothetical protein
	?	NC_002947	= 4210995	50 (0.830)					coding (82/285 nt)	PP_5621	hypothetical protein
*	?	NC_002947	4238005 =	67 (1.050)	7 (0.120)	6/240	NT	9.8%	coding (245/1122 nt)	catB	muconate cycloisomerase 1
	?	NC_002947	4238048 =	65 (1.080)					coding (202/1122 nt)	catB	muconate cycloisomerase 1
*	?	NC_002947	= 4240860	45 (0.700)	3 (0.050)	3/246	NT	6.4%	coding (839/1413 nt)	PP_3718	aminotransferase
	?	NC_002947	= 4240907	44 (0.710)					coding (792/1413 nt)	PP_3718	aminotransferase
*	?	NC_002947	= 4242849	73 (1.140)	4 (0.070)	4/242	NT	5.6%	intergenic (‑13/+181)	PP_3719/PP_3720	putrescine‑binding protein/NAD(P)H quinone oxidoreductase
	?	NC_002947	= 4242870	65 (1.070)					intergenic (‑34/+160)	PP_3719/PP_3720	putrescine‑binding protein/NAD(P)H quinone oxidoreductase
*	?	NC_002947	4250365 =	61 (0.950)	3 (0.050)	3/244	NT	5.4%	coding (840/1161 nt)	PP_3725	acyl‑CoA dehydrogenase
	?	NC_002947	4250414 =	46 (0.750)					coding (791/1161 nt)	PP_3725	acyl‑CoA dehydrogenase
*	?	NC_002947	4299914 =	72 (1.130)	4 (0.070)	4/234	NT	5.7%	coding (545/870 nt)	PP_3772	repressor protein‑like protein
	?	NC_002947	4299988 =	65 (1.100)					coding (619/870 nt)	PP_3772	repressor protein‑like protein
*	?	NC_002947	= 4326128	58 (0.910)	3 (0.050)	3/246	NT	5.2%	coding (606/1335 nt)	pvdA	L‑ornithine 5‑monooxygenase
	?	NC_002947	= 4326163	54 (0.870)					coding (641/1335 nt)	pvdA	L‑ornithine 5‑monooxygenase
*	?	NC_002947	= 4330864	52 (0.810)	3 (0.050)	3/240	NT	5.5%	coding (310/747 nt)	PP_3802	cation ABC transporter ATP‑binding protein
	?	NC_002947	= 4330915	54 (0.890)					coding (361/747 nt)	PP_3802	cation ABC transporter ATP‑binding protein
*	?	NC_002947	= 4419693	64 (1.000)	4 (0.070)	4/242	NT	6.4%	coding (460/552 nt)	PP_3910	hypothetical protein
	?	NC_002947	= 4419709	56 (0.920)					coding (476/552 nt)	PP_3910	hypothetical protein
*	?	NC_002947	= 4452710	63 (0.980)	4 (0.070)	4/242	NT	6.2%	coding (2314/3564 nt)	nicB	nicotinate dehydrogenase subunit B
	?	NC_002947	= 4452767	60 (0.980)					coding (2371/3564 nt)	nicB	nicotinate dehydrogenase subunit B
*	?	NC_002947	= 4506436	58 (0.910)	3 (0.050)	3/244	NT	5.1%	coding (132/978 nt)	gqr	glutathionyl‑hydroquinone reductase
	?	NC_002947	= 4506462	55 (0.890)					coding (158/978 nt)	gqr	glutathionyl‑hydroquinone reductase
*	?	NC_002947	4569388 =	56 (0.880)	4 (0.070)	4/240	NT	7.0%	coding (1318/2070 nt)	malQ	4‑alpha‑glucanotransferase
	?	NC_002947	4569469 =	54 (0.890)					coding (1399/2070 nt)	malQ	4‑alpha‑glucanotransferase
*	?	NC_002947	4572284 =	68 (1.060)	4 (0.070)	4/242	NT	6.2%	coding (2148/2775 nt)	treY	maltooligosyl trehalose synthase
	?	NC_002947	4572328 =	56 (0.920)					coding (2192/2775 nt)	treY	maltooligosyl trehalose synthase
*	?	NC_002947	4604411 =	58 (0.910)	5 (0.080)	4/238	NT	7.6%	coding (241/411 nt)	PP_4076	hypothetical protein
	?	NC_002947	4604450 =	67 (1.120)					coding (280/411 nt)	PP_4076	hypothetical protein
*	?	NC_002947	4647557 =	17 (0.270)	5 (0.110)	5/176	NT	36.0%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4647665 =	6 (0.140)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	= 4647595	13 (0.200)	3 (0.070)	3/176	NT	28.6%	intergenic (+48/+83)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	= 4647625	6 (0.140)					intergenic (+78/+53)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	4692786 =	59 (0.920)	4 (0.060)	4/246	NT	6.6%	coding (661/2931 nt)	PP_4154	class 3 aminotransferase
	?	NC_002947	4692831 =	56 (0.900)					coding (706/2931 nt)	PP_4154	class 3 aminotransferase
*	?	NC_002947	= 4694286	72 (1.130)	4 (0.070)	4/244	NT	5.4%	coding (2161/2931 nt)	PP_4154	class 3 aminotransferase
	?	NC_002947	= 4694360	71 (1.160)					coding (2235/2931 nt)	PP_4154	class 3 aminotransferase
*	?	NC_002947	4704987 =	42 (0.660)	4 (0.070)	4/244	NT	9.7%	coding (177/1695 nt)	kdpA	potassium‑transporting ATPase subunit A
	?	NC_002947	4705011 =	34 (0.550)					coding (153/1695 nt)	kdpA	potassium‑transporting ATPase subunit A
*	?	NC_002947	4770605 =	69 (1.080)	6 (0.100)	6/246	NT	7.9%	coding (8662/10413 nt)	pvdD	non‑ribosomal peptide synthetase
	?	NC_002947	4770658 =	73 (1.180)					coding (8609/10413 nt)	pvdD	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4786125	67 (1.050)	4 (0.070)	4/242	NT	6.0%	coding (1189/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	= 4786154	62 (1.020)					coding (1160/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	4808174 =	0 (0.000)	19 (0.410)	16/184	NT	44.7%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	47 (1.010)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4808179	0 (0.000)	22 (0.380)	17/230	NT	51.2%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	42 (0.720)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4822756	56 (0.880)	4 (0.070)	4/242	NT	6.8%	coding (8434/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	= 4822837	56 (0.920)					coding (8353/12954 nt)	pvdL	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4825676	59 (0.920)	4 (0.070)	4/244	NT	6.6%	coding (5514/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	= 4825741	56 (0.910)					coding (5449/12954 nt)	pvdL	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4852453	16 (0.250)	8 (0.180)	8/172	NT	33.4%	intergenic (‑124/+173)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
	?	NC_002947	= 4852512	21 (0.480)					intergenic (‑183/+114)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
*	?	NC_002947	4860126 =	72 (1.130)	4 (0.070)	4/232	NT	5.9%	coding (924/2331 nt)	ligA	DNA ligase
	?	NC_002947	4860172 =	61 (1.040)					coding (878/2331 nt)	ligA	DNA ligase
*	?	NC_002947	4889569 =	43 (0.670)	3 (0.060)	3/200	NT	9.9%	intergenic (+15/‑138)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	4889660 =	21 (0.420)					intergenic (+106/‑47)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
*	?	NC_002947	4893553 =	54 (0.840)	3 (0.060)	3/200	NT	8.8%	intergenic (+28/‑180)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	4893632 =	20 (0.400)					intergenic (+107/‑101)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	4932061 =	60 (0.940)	3 (0.050)	3/238	NT	5.4%	coding (157/741 nt)	fliA	RNA polymerase sigma 28 factor
	?	NC_002947	4932103 =	48 (0.800)					coding (115/741 nt)	fliA	RNA polymerase sigma 28 factor
*	?	NC_002947	4948510 =	53 (0.830)	3 (0.050)	3/240	NT	5.9%	coding (338/435 nt)	fliO	flagellar protein FliO
	?	NC_002947	4948556 =	46 (0.760)					coding (292/435 nt)	fliO	flagellar protein FliO
*	?	NC_002947	= 4956389	52 (0.810)	4 (0.070)	4/244	NT	7.5%	coding (366/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_002947	= 4956435	49 (0.800)					coding (320/1374 nt)	fliI	flagellum‑specific ATP synthase
*	?	NC_002947	4957290 =	69 (1.080)	6 (0.100)	4/246	NT	8.6%	coding (228/792 nt)	fliH	flagellar assembly protein FliH
	?	NC_002947	4957335 =	61 (0.980)					coding (183/792 nt)	fliH	flagellar assembly protein FliH
*	?	NC_002947	4958360 =	54 (0.840)	3 (0.050)	3/240	NT	5.4%	coding (340/1020 nt)	fliG	flagellar motor switch protein
	?	NC_002947	4958434 =	55 (0.910)					coding (266/1020 nt)	fliG	flagellar motor switch protein
*	?	NC_002947	4992723 =	63 (0.980)	4 (0.060)	4/248	NT	6.0%	coding (680/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
	?	NC_002947	4992766 =	64 (1.020)					coding (723/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
*	?	NC_002947	5022830 =	63 (0.980)	4 (0.070)	4/238	NT	6.1%	coding (181/657 nt)	PP_4427	amino acid ABC transporter permease
	?	NC_002947	5022927 =	65 (1.080)					coding (84/657 nt)	PP_4427	amino acid ABC transporter permease
*	?	NC_002947	5033495 =	0 (0.000)	4 (0.070)	3/240	NT	100%	coding (251/321 nt)	PP_4437	transposase
	?	NC_002947	5036419 =	NA (NA)					coding (227/321 nt)	PP_4441	transposase
*	?	NC_002947	5036412 =	NA (NA)	3 (0.050)	3/240	NT	NA	coding (220/321 nt)	PP_4441	transposase
	?	NC_002947	5036450 =	NA (NA)					coding (258/321 nt)	PP_4441	transposase
*	?	NC_002947	5051331 =	74 (1.160)	4 (0.070)	4/242	NT	5.6%	intergenic (‑271/+103)	PP_5687/PP_4452	MFS transporter/NAD/NADP octopine/nopaline dehydrogenase family protein
	?	NC_002947	5051401 =	64 (1.050)					intergenic (‑341/+33)	PP_5687/PP_4452	MFS transporter/NAD/NADP octopine/nopaline dehydrogenase family protein
*	?	NC_002947	= 5066904	48 (0.750)	3 (0.050)	3/240	NT	6.1%	coding (633/906 nt)	PP_4464	LysR family transcriptional regulator
	?	NC_002947	= 5066928	47 (0.780)					coding (609/906 nt)	PP_4464	LysR family transcriptional regulator
*	?	NC_002947	5099947 =	51 (0.800)	7 (0.140)	7/204	NT	15.6%	intergenic (+33/+120)	PP_4488/phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
	?	NC_002947	5100029 =	35 (0.680)					intergenic (+115/+38)	PP_4488/phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
*	?	NC_002947	= 5131760	62 (0.970)	4 (0.070)	4/242	NT	5.9%	coding (114/588 nt)	PP_4517	hypothetical protein
	?	NC_002947	= 5131789	69 (1.130)					coding (143/588 nt)	PP_4517	hypothetical protein
*	?	NC_002947	= 5164442	78 (1.220)	4 (0.070)	4/244	NT	5.2%	coding (3438/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	= 5164477	71 (1.160)					coding (3403/3906 nt)	hrpA	ATP‑dependent helicase HrpA
*	?	NC_002947	5189221 =	66 (1.030)	5 (0.080)	5/246	NT	7.8%	coding (85/294 nt)	PP_4569	hypothetical protein
	?	NC_002947	5189309 =	55 (0.890)					intergenic (‑4/+21)	PP_4569/PP_4570	hypothetical protein/hypothetical protein
*	?	NC_002947	= 5211690	44 (0.690)	3 (0.050)	3/238	NT	6.2%	coding (260/1638 nt)	PP_4592	metal dependent hydrolase
	?	NC_002947	= 5211711	49 (0.820)					coding (239/1638 nt)	PP_4592	metal dependent hydrolase
*	?	NC_002947	5221051 =	74 (1.160)	4 (0.060)	3/250	NT	5.4%	coding (177/888 nt)	PP_4601	LysR family transcriptional regulator
	?	NC_002947	5221098 =	66 (1.050)					coding (224/888 nt)	PP_4601	LysR family transcriptional regulator
*	?	NC_002947	5227143 =	58 (0.910)	3 (0.050)	3/242	NT	5.3%	coding (1916/2391 nt)	PP_4606	ferric siderophore receptor
	?	NC_002947	5227175 =	52 (0.850)					coding (1884/2391 nt)	PP_4606	ferric siderophore receptor
*	?	NC_002947	5235967 =	71 (1.110)	4 (0.070)	4/242	NT	6.5%	coding (1301/2325 nt)	fecA	outer membrane ferric citrate porin
	?	NC_002947	5236068 =	48 (0.790)					coding (1402/2325 nt)	fecA	outer membrane ferric citrate porin
*	?	NC_002947	5248442 =	84 (1.310)	4 (0.070)	4/242	NT	5.0%	coding (219/3303 nt)	PP_4623	hypothetical protein
	?	NC_002947	5248487 =	71 (1.160)					coding (174/3303 nt)	PP_4623	hypothetical protein
*	?	NC_002947	= 5274012	22 (0.340)	4 (0.070)	4/228	NT	14.6%	intergenic (+34/+72)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
	?	NC_002947	= 5274059	27 (0.470)					intergenic (+81/+25)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
*	?	NC_002947	= 5288423	21 (0.330)	7 (0.140)	7/194	NT	28.5%	intergenic (‑104/+80)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	= 5288457	19 (0.390)					intergenic (‑138/+46)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	5303331 =	67 (1.050)	4 (0.070)	4/244	NT	5.6%	coding (442/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
	?	NC_002947	5303380 =	70 (1.140)					coding (393/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
*	?	NC_002947	= 5303678	56 (0.880)	3 (0.050)	3/238	NT	5.4%	coding (95/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
	?	NC_002947	= 5303702	52 (0.870)					coding (71/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
*	?	NC_002947	= 5361814	57 (0.890)	5 (0.080)	4/242	NT	8.0%	coding (546/756 nt)	tpiA	triose phosphate isomerase
	?	NC_002947	= 5361846	61 (1.000)					coding (514/756 nt)	tpiA	triose phosphate isomerase
*	?	NC_002947	= 5435164	73 (1.140)	6 (0.100)	4/244	NT	7.6%	coding (100/2529 nt)	hrpB	ATP‑dependent helicase HrpB
	?	NC_002947	= 5435192	75 (1.220)					coding (72/2529 nt)	hrpB	ATP‑dependent helicase HrpB
*	?	NC_002947	= 5437097	80 (1.250)	5 (0.080)	5/238	NT	7.0%	coding (462/837 nt)	PP_4775	hypothetical protein
	?	NC_002947	= 5437131	57 (0.950)					coding (428/837 nt)	PP_4775	hypothetical protein
*	?	NC_002947	= 5495106	64 (1.000)	4 (0.070)	4/242	NT	5.5%	coding (255/627 nt)	cobH	precorrin‑8X methylmutase
	?	NC_002947	= 5495177	76 (1.250)					coding (184/627 nt)	cobH	precorrin‑8X methylmutase
*	?	NC_002947	= 5499018	61 (0.950)	3 (0.050)	3/240	NT	5.1%	coding (887/1095 nt)	cbiD	cobalt‑precorrin‑6A synthase
	?	NC_002947	= 5499047	53 (0.880)					coding (916/1095 nt)	cbiD	cobalt‑precorrin‑6A synthase
*	?	NC_002947	5499260 =	60 (0.940)	4 (0.070)	4/236	NT	7.2%	coding (38/720 nt)	cobK	precorrin‑6x reductase
	?	NC_002947	5499339 =	47 (0.790)					coding (117/720 nt)	cobK	precorrin‑6x reductase
*	?	NC_002947	= 5513267	44 (0.690)	4 (0.080)	4/202	NT	9.6%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5513323	40 (0.790)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	= 5519195	69 (1.080)	4 (0.070)	4/244	NT	6.2%	coding (535/789 nt)	PP_4852	AraC family transcriptional regulator
	?	NC_002947	= 5519293	55 (0.890)					coding (437/789 nt)	PP_4852	AraC family transcriptional regulator
*	?	NC_002947	= 5522274	74 (1.160)	5 (0.080)	5/242	NT	6.6%	coding (15/507 nt)	PP_4856	Dps family ferritin
	?	NC_002947	= 5522302	72 (1.180)					coding (43/507 nt)	PP_4856	Dps family ferritin
*	?	NC_002947	5545321 =	NA (NA)	62 (0.980)	50/250	NT	100%	intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5621245	0 (0.000)					coding (19/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5545666	NA (NA)	64 (1.020)	50/248	NT	100%	intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	5621244 =	0 (0.000)					coding (20/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5547469	68 (1.060)	5 (0.080)	4/240	NT	6.6%	coding (1585/2574 nt)	rnr	exoribonuclease R
	?	NC_002947	= 5547503	78 (1.290)					coding (1551/2574 nt)	rnr	exoribonuclease R
*	?	NC_002947	5552330 =	53 (0.830)	4 (0.070)	3/240	NT	7.1%	coding (1559/1566 nt)	PP_4882	iron ABC transporter permease
	?	NC_002947	5552377 =	54 (0.890)					intergenic (+40/+621)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein
*	?	NC_002947	5571407 =	75 (1.170)	6 (0.110)	5/226	NT	8.6%	intergenic (+29/+112)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
	?	NC_002947	5571492 =	61 (1.070)					intergenic (+114/+27)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
*	?	NC_002947	5605610 =	63 (0.980)	9 (0.150)	7/244	NT	13.3%	coding (337/1419 nt)	PP_4926	HlyD family secretion protein
	?	NC_002947	5605657 =	57 (0.930)					coding (290/1419 nt)	PP_4926	HlyD family secretion protein
*	?	NC_002947	5627606 =	69 (1.080)	4 (0.070)	4/242	NT	6.3%	intergenic (‑105/+88)	PP_4944/rlmJ	carbamoyltransferase/23S rRNA (adenine(2030)‑N(6))‑methyltransferase
	?	NC_002947	5627691 =	54 (0.890)					intergenic (‑190/+3)	PP_4944/rlmJ	carbamoyltransferase/23S rRNA (adenine(2030)‑N(6))‑methyltransferase
*	?	NC_002947	5634606 =	44 (0.690)	4 (0.070)	4/236	NT	8.3%	intergenic (+182/+201)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
	?	NC_002947	5634672 =	47 (0.790)					intergenic (+248/+135)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
*	?	NC_002947	5653843 =	82 (1.280)	5 (0.080)	5/242	NT	6.6%	coding (632/1164 nt)	pgk	phosphoglycerate kinase
	?	NC_002947	5653886 =	63 (1.030)					coding (589/1164 nt)	pgk	phosphoglycerate kinase
*	?	NC_002947	= 5709819	42 (0.660)	4 (0.070)	4/238	NT	9.2%	coding (3837/4761 nt)	PP_5009	hypothetical protein
	?	NC_002947	= 5709836	40 (0.670)					coding (3854/4761 nt)	PP_5009	hypothetical protein
*	?	NC_002947	5737021 =	69 (1.080)	4 (0.060)	4/248	NT	5.4%	coding (425/1674 nt)	hutU	urocanate hydratase
	?	NC_002947	5737071 =	72 (1.150)					coding (375/1674 nt)	hutU	urocanate hydratase
*	?	NC_002947	5742701 =	63 (0.980)	5 (0.080)	5/240	NT	8.2%	coding (467/1011 nt)	fbp	class 1 fructose‑1,6‑bisphosphatase
	?	NC_002947	5742755 =	53 (0.880)					coding (413/1011 nt)	fbp	class 1 fructose‑1,6‑bisphosphatase
*	?	NC_002947	5815260 =	63 (0.980)	4 (0.070)	4/240	NT	6.5%	coding (443/699 nt)	PP_5090	cell division protein
	?	NC_002947	5815299 =	55 (0.910)					coding (482/699 nt)	PP_5090	cell division protein
*	?	NC_002947	= 5816842	50 (0.780)	9 (0.150)	8/244	NT	21.2%	intergenic (+28/+101)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5816927	19 (0.310)					intergenic (+113/+16)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	5819210 =	70 (1.090)	4 (0.070)	4/238	NT	6.1%	coding (479/819 nt)	proI	pyrroline‑5‑carboxylate reductase
	?	NC_002947	5819277 =	57 (0.950)					coding (546/819 nt)	proI	pyrroline‑5‑carboxylate reductase
*	?	NC_002947	= 5825599	74 (1.160)	4 (0.070)	4/234	NT	5.5%	coding (696/813 nt)	thiG	thiazole synthase
	?	NC_002947	= 5825622	70 (1.190)					coding (673/813 nt)	thiG	thiazole synthase
*	?	NC_002947	= 5837869	58 (0.910)	4 (0.070)	4/238	NT	7.1%	coding (670/1371 nt)	PP_5116	hypothetical protein
	?	NC_002947	= 5837905	51 (0.850)					coding (706/1371 nt)	PP_5116	hypothetical protein
*	?	NC_002947	5839561 =	72 (1.130)	4 (0.070)	4/244	NT	5.6%	coding (931/993 nt)	yheT	putative hydrolase
	?	NC_002947	5839603 =	66 (1.070)					coding (973/993 nt)	yheT	putative hydrolase
*	?	NC_002947	= 5850864	62 (0.970)	4 (0.070)	4/238	NT	6.4%	coding (1569/1842 nt)	ilvD	dihydroxy‑acid dehydratase
	?	NC_002947	= 5850932	58 (0.970)					coding (1637/1842 nt)	ilvD	dihydroxy‑acid dehydratase
*	?	NC_002947	5856285 =	60 (0.940)	4 (0.070)	4/238	NT	7.0%	coding (212/1392 nt)	PP_5133	membrane protein
	?	NC_002947	5856319 =	50 (0.830)					coding (246/1392 nt)	PP_5133	membrane protein
*	?	NC_002947	5860423 =	58 (0.910)	4 (0.070)	4/240	NT	6.8%	coding (1306/1725 nt)	PP_5136	ABC transporter permease
	?	NC_002947	5860462 =	54 (0.890)					coding (1267/1725 nt)	PP_5136	ABC transporter permease
*	?	NC_002947	5864720 =	77 (1.200)	4 (0.070)	4/238	NT	5.7%	coding (1431/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
	?	NC_002947	5864769 =	59 (0.980)					coding (1382/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
*	?	NC_002947	5874548 =	50 (0.780)	4 (0.070)	4/232	NT	7.7%	intergenic (‑40/+108)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	5874630 =	50 (0.860)					intergenic (‑122/+26)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
*	?	NC_002947	5907241 =	70 (1.090)	4 (0.070)	3/236	NT	6.1%	coding (726/1095 nt)	spuE	spermidine/putrescine ABC transporter substrate‑binding protein
	?	NC_002947	5907301 =	59 (0.990)					coding (666/1095 nt)	spuE	spermidine/putrescine ABC transporter substrate‑binding protein
*	?	NC_002947	= 5914184	30 (0.470)	6 (0.120)	5/198	NT	19.5%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5914224	26 (0.520)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	5927278 =	59 (0.920)	3 (0.050)	3/242	NT	5.2%	coding (617/1623 nt)	PP_5195	iron ABC transporter permease
	?	NC_002947	5927332 =	53 (0.870)					coding (563/1623 nt)	PP_5195	iron ABC transporter permease
*	?	NC_002947	= 5938181	60 (0.940)	5 (0.080)	3/240	NT	8.1%	coding (742/2721 nt)	rbbA	ribosome‑associated ATPase
	?	NC_002947	= 5938213	57 (0.940)					coding (774/2721 nt)	rbbA	ribosome‑associated ATPase
*	?	NC_002947	5946319 =	71 (1.110)	5 (0.080)	5/246	NT	6.7%	coding (690/1467 nt)	ubiD	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
	?	NC_002947	5946371 =	71 (1.150)					coding (638/1467 nt)	ubiD	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
*	?	NC_002947	= 5983781	62 (0.970)	4 (0.070)	4/240	NT	5.5%	coding (4426/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	= 5983820	79 (1.310)					coding (4465/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
*	?	NC_002947	5990819 =	72 (1.130)	5 (0.090)	4/230	NT	7.7%	intergenic (‑153/‑76)	ycaC‑III/PP_5249	putative hydrolase/LysR family transcriptional regulator
	?	NC_002947	5990863 =	54 (0.930)					intergenic (‑197/‑32)	ycaC‑III/PP_5249	putative hydrolase/LysR family transcriptional regulator
*	?	NC_002947	= 6025257	62 (0.970)	4 (0.060)	4/246	NT	6.2%	coding (129/1554 nt)	PP_5276	phospholipase D family protein
	?	NC_002947	= 6025319	61 (0.980)					coding (191/1554 nt)	PP_5276	phospholipase D family protein
*	?	NC_002947	= 6028567	75 (1.170)	4 (0.070)	3/244	NT	5.8%	coding (894/1494 nt)	kauB	4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	= 6028619	59 (0.960)					coding (842/1494 nt)	kauB	4‑guanidinobutyraldehyde dehydrogenase
*	?	NC_002947	= 6059076	47 (0.730)	4 (0.070)	4/242	NT	8.4%	coding (116/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059088	43 (0.710)					coding (128/1404 nt)	PP_5311	signal transduction protein
*	?	NC_002947	6060431 =	73 (1.140)	13 (0.230)	8/226	NT	16.4%	intergenic (+67/+114)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6060518 =	68 (1.190)					intergenic (+154/+27)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	= 6121243	40 (0.630)	3 (0.050)	3/242	NT	6.2%	coding (907/1386 nt)	PP_5371	rubredoxin/rubredoxin reductase
	?	NC_002947	= 6121266	52 (0.850)					coding (884/1386 nt)	PP_5371	rubredoxin/rubredoxin reductase
*	?	NC_002947	= 6165018	96 (1.500)	5 (0.080)	5/248	NT	5.3%	coding (265/2013 nt)	PP_5405	transposase
	?	NC_002947	= 6165050	84 (1.340)					coding (233/2013 nt)	PP_5405	transposase
*	?	NC_002947	= 6174781	69 (1.080)	6 (0.100)	5/246	NT	8.0%	coding (396/420 nt)	atpC	ATP synthase subunit epsilon
	?	NC_002947	= 6174809	72 (1.160)					coding (368/420 nt)	atpC	ATP synthase subunit epsilon