breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	11,569:1	+G	6.4%	coding (467/1104 nt)	dnaN →	DNA polymerase III subunit beta
RA	58,435	G→C	5.8%	intergenic (‑346/+342)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,439	G→C	8.7%	intergenic (‑350/+338)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	74,173	A→T	5.1%	M217L (ATG→TTG)	PP_0063 →	lipid A biosynthesis lauroyl acyltransferase
RA	81,979	A→G	7.9%	I97V (ATC→GTC)	PP_0071 →	hypothetical protein
RA	81,984	G→C	8.0%	E98D (GAG→GAC)	PP_0071 →	hypothetical protein
RA	81,989	C→T	8.3%	T100M (ACG→ATG)	PP_0071 →	hypothetical protein
RA	85,081	T→G	6.4%	intergenic (+59/+71)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,104	G→A	7.1%	intergenic (+82/+48)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	101,802	A→C	6.3%	K208Q (AAG→CAG) ‡	prlC →	oligopeptidase A
RA	101,803	A→T	10.9%	K208M (AAG→ATG) ‡	prlC →	oligopeptidase A
RA	101,804	G→T	6.4%	K208N (AAG→AAT) ‡	prlC →	oligopeptidase A
RA	118,131	A→T	7.7%	intergenic (‑47/+18)	metQ ← / ← metI	methionine ABC transporter substrate‑binding protein/ABC transporter permease
RA	126,115	A→G	8.9%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	8.9%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	132,467	G→C	5.3%	intergenic (+41/‑111)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	132,471	T→C	5.2%	intergenic (+45/‑107)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	157,141	Δ1 bp	9.8%	coding (585/1308 nt)	citN ←	citrate transporter
RA	157,149:1	+T	8.9%	coding (577/1308 nt)	citN ←	citrate transporter
RA	160,310	C→T	5.0%	E27K (GAG→AAG)	PP_0149 ←	hypothetical protein
RA	160,311	A→G	5.1%	L26L (CTT→CTC)	PP_0149 ←	hypothetical protein
RA	162,281	A→T	8.4%	intergenic (‑315/+59)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,282	A→T	8.3%	intergenic (‑316/+58)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,292	G→T	8.1%	intergenic (‑326/+48)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,293	A→G	5.8%	intergenic (‑327/+47)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	181,805	T→C	14.9%	intergenic (+19/‑87)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,811	C→T	14.4%	intergenic (+25/‑81)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,812	A→G	13.3%	intergenic (+26/‑80)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,818	G→A	13.8%	intergenic (+32/‑74)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	182,034	G→A	7.9%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	7.8%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	8.1%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	185,731	C→G	5.0%	G136G (GGG→GGC)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	185,734	C→A	5.0%	E135D (GAG→GAT)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	188,613	T→C	5.9%	L241P (CTG→CCG)	PP_0165 →	GGDEF domain‑containing protein
RA	188,615	A→G	5.7%	T242A (ACC→GCC) ‡	PP_0165 →	GGDEF domain‑containing protein
RA	188,616	C→T	5.7%	T242I (ACC→ATC) ‡	PP_0165 →	GGDEF domain‑containing protein
RA	188,618	G→A	5.5%	G243R (GGG→AGG)	PP_0165 →	GGDEF domain‑containing protein
RA	195,231	A→G	5.8%	Q246R (CAG→CGG) ‡	PP_0168 →	putative surface adhesion protein
RA	195,232	G→A	5.8%	Q246Q (CAG→CAA) ‡	PP_0168 →	putative surface adhesion protein
RA	195,234	T→A	5.9%	I247N (ATT→AAT)	PP_0168 →	putative surface adhesion protein
RA	195,236	T→C	5.9%	S248P (TCG→CCG) ‡	PP_0168 →	putative surface adhesion protein
RA	195,237	C→T	5.9%	S248L (TCG→TTG) ‡	PP_0168 →	putative surface adhesion protein
RA	195,559	C→A	39.4%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	8.0%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	8.1%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	49.9%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	7.6%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	19.6%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	22.0%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	22.8%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	20.8%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	11.7%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	22.2%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	7.7%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	11.6%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	12.2%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	18.8%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	21.0%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	17.0%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	11.1%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	198,367	G→C	9.2%	V1291V (GTG→GTC)	PP_0168 →	putative surface adhesion protein
RA	225,625	G→C	7.6%	S12S (TCC→TCG)	PP_0173 ←	transcriptional factor‑like protein
RA	225,629	G→T	7.8%	P11Q (CCA→CAA)	PP_0173 ←	transcriptional factor‑like protein
RA	226,226	T→A	5.4%	L151Q (CTG→CAG)	PP_0174 →	hypothetical protein
RA	226,659	T→C	7.3%	intergenic (+66/‑67)	PP_0174 → / → PP_0175	hypothetical protein/transcriptional regulator
RA	226,661	A→T	7.4%	intergenic (+68/‑65)	PP_0174 → / → PP_0175	hypothetical protein/transcriptional regulator
RA	226,663	G→A	7.3%	intergenic (+70/‑63)	PP_0174 → / → PP_0175	hypothetical protein/transcriptional regulator
RA	239,891	G→A	100%	W62* (TGG→TGA)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	239,949	A→G	6.7%	T82A (ACC→GCC)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	250,267	Δ1 bp	6.2%	coding (936/1347 nt)	nfeD ←	membrane bound peptidase NefD
RA	255,264	A→G	7.2%	intergenic (‑148/+15)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	262,752	T→A	6.7%	L90Q (CTG→CAG)	PP_0211 →	hypothetical protein
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	284,586	T→A	15.4%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,587	T→A	13.8%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	288,667	A→T	5.2%	K29M (AAG→ATG)	oprE →	outer‑membrane porin E
RA	289,942	C→A	7.3%	intergenic (+26/‑140)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,944	G→C	7.1%	intergenic (+28/‑138)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,946	T→G	7.2%	intergenic (+30/‑136)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	292,606	C→G	8.1%	intergenic (+22/‑38)	ssuA → / → ssuD	aliphatic sulfonatesABC transporter substrate‑binding protein/alkanesulfonate monooxygenase
RA	304,433	A→G	5.2%	L113L (TTG→CTG)	PP_0249 ←	hypothetical protein
RA	304,438	A→G	6.4%	V111A (GTG→GCG)	PP_0249 ←	hypothetical protein
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	321,740	T→C	5.9%	intergenic (+27/+431)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	321,741	G→A	5.9%	intergenic (+28/+430)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,133	G→A	14.5%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	14.9%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	326,065	C→A	6.3%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	333,174	C→T	7.4%	H105Y (CAC→TAC)	PP_5435 →	hypothetical protein
RA	333,177	G→T	7.5%	A106S (GCC→TCC) ‡	PP_5435 →	hypothetical protein
RA	333,179	C→G	8.6%	A106A (GCC→GCG) ‡	PP_5435 →	hypothetical protein
RA	333,181	A→C	7.4%	E107A (GAG→GCG)	PP_5435 →	hypothetical protein
RA	333,184	A→G	7.3%	Y108C (TAC→TGC)	PP_5435 →	hypothetical protein
RA	334,194	C→T	5.4%	N15N (AAC→AAT)	PP_0275 →	hypothetical protein
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	337,836	C→T	21.7%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	341,363	T→C	5.5%	intergenic (‑257/‑121)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	344,032	A→G	10.8%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,041	Δ1 bp	11.6%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	11.8%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	358,085	A→G	23.5%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,087	C→T	23.5%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	T→C	25.0%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,091	G→A	25.0%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	A→G	28.6%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,096	C→T	33.3%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	367,362	C→A	8.8%	intergenic (‑48/+26)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	367,367	T→G	11.3%	intergenic (‑53/+21)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	375,860	A→G	7.8%	I384V (ATT→GTT)	PP_0312 →	electron transfer flavoprotein subunit alpha
RA	388,722	T→A	11.3%	L198Q (CTG→CAG)	soxB →	sarcosine oxidase subunit beta
RA	395,846	C→A	9.7%	intergenic (+28/+176)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,847	A→T	9.9%	intergenic (+29/+175)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,848	T→G	10.0%	intergenic (+30/+174)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	399,528	A→G	6.4%	V19A (GTG→GCG)	PP_0332 ←	acyltransferase
RA	418,296	C→G	6.5%	Q27E (CAG→GAG)	PP_0345 →	heptose kinase WapP
RA	447,148	Δ1 bp	5.6%	intergenic (+28/‑274)	PP_0368 → / → PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase
RA	447,152	T→G	5.6%	intergenic (+32/‑270)	PP_0368 → / → PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase
RA	447,156	C→A	5.3%	intergenic (+36/‑266)	PP_0368 → / → PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase
RA	447,159:1	+C	5.4%	intergenic (+39/‑263)	PP_0368 → / → PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase
RA	461,023	C→A	7.2%	R481L (CGG→CTG)	pqqF ←	coenzyme PQQ synthesis protein F
RA	461,030	C→G	7.7%	V479L (GTG→CTG)	pqqF ←	coenzyme PQQ synthesis protein F
RA	461,037	T→G	7.6%	P476P (CCA→CCC)	pqqF ←	coenzyme PQQ synthesis protein F
RA	464,320	G→C	8.5%	H259Q (CAC→CAG) ‡	davB ←	lysine 2‑monooxygenase
RA	464,321	T→A	8.3%	H259L (CAC→CTC) ‡	davB ←	lysine 2‑monooxygenase
RA	464,322	G→C	8.3%	H259D (CAC→GAC) ‡	davB ←	lysine 2‑monooxygenase
RA	465,442	A→G	6.4%	L124L (TTG→CTG)	PP_0384 ←	AsnC family transcriptional regulator
RA	465,446	A→G	6.2%	D122D (GAT→GAC) ‡	PP_0384 ←	AsnC family transcriptional regulator
RA	465,447	T→A	6.1%	D122V (GAT→GTT) ‡	PP_0384 ←	AsnC family transcriptional regulator
RA	468,461	C→T	6.4%	A832A (GCG→GCA)	PP_0386 ←	sensory box protein
RA	468,464	A→G	6.6%	C831C (TGT→TGC)	PP_0386 ←	sensory box protein
RA	471,066	T→C	7.5%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,067	G→A	7.4%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	478,983	C→G	5.8%	Q162H (CAG→CAC) ‡	cca ←	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	478,984	T→C	6.7%	Q162R (CAG→CGG) ‡	cca ←	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	478,986	G→C	6.9%	R161R (CGC→CGG) ‡	cca ←	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	478,988	G→A	6.0%	R161C (CGC→TGC) ‡	cca ←	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	478,989	C→G	6.0%	M160I (ATG→ATC)	cca ←	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	501,673	A→T	7.3%	intergenic (+22/‑39)	PP_0412 → / → PP_0413	polyamine ABC transportersubstrate‑binding protein/polyamine ABC transporter permease
RA	501,674	A→T	7.2%	intergenic (+23/‑38)	PP_0412 → / → PP_0413	polyamine ABC transportersubstrate‑binding protein/polyamine ABC transporter permease
RA	501,675	A→T	7.2%	intergenic (+24/‑37)	PP_0412 → / → PP_0413	polyamine ABC transportersubstrate‑binding protein/polyamine ABC transporter permease
RA	503,825	Δ1 bp	7.8%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,831	A→T	7.6%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,832	A→T	7.6%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,837:1	+C	7.6%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	524,172	G→T	9.7%	intergenic (+39/‑777)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,173	G→A	9.6%	intergenic (+40/‑776)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,180	T→G	22.9%	intergenic (+47/‑769)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	541,437	A→G	5.1%	Q1272R (CAG→CGG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	541,440	C→T	5.1%	P1273L (CCG→CTG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	544,650	A→C	7.7%	K964Q (AAG→CAG) ‡	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	544,651	A→T	6.5%	K964M (AAG→ATG) ‡	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	544,652	G→T	6.4%	K964N (AAG→AAT) ‡	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	547,203	A→G	7.8%	H18R (CAC→CGC)	fusA →	elongation factor G 1
RA	550,549	C→G	6.0%	intergenic (+30/‑112)	tufB → / → rpsJ	elongation factor Tu‑B/30S ribosomal protein S10
RA	556,978	C→T	6.6%	R9R (CGC→CGT)	rpsN →	30S ribosomal protein S14
RA	564,377:1	+A	9.3%	intergenic (+29/‑144)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,382	Δ1 bp	9.3%	intergenic (+34/‑139)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	566,620	C→T	6.7%	intergenic (+32/+41)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	571,214	G→C	10.3%	K62N (AAG→AAC)	ssb →	single‑stranded DNA‑binding protein
RA	571,215	G→C	10.3%	V63L (GTT→CTT)	ssb →	single‑stranded DNA‑binding protein
RA	571,617	G→A	6.2%	intergenic (+43/+48)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	571,618	T→C	6.3%	intergenic (+44/+47)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	591,079	G→A	6.6%	R109H (CGC→CAC)	PP_0501 →	NAD‑dependent epimerase/dehydratase family protein
RA	591,082	T→C	6.8%	V110A (GTG→GCG)	PP_0501 →	NAD‑dependent epimerase/dehydratase family protein
RA	593,891	C→T	8.3%	L83L (CTG→CTA) ‡	oprG ←	outer membrane protein OprG
RA	593,892	A→G	8.0%	L83P (CTG→CCG) ‡	oprG ←	outer membrane protein OprG
RA	623,513	G→A	6.8%	H56H (CAC→CAT)	PP_0536 ←	hypothetical protein
RA	623,517	C→A	6.6%	R55L (CGG→CTG)	PP_0536 ←	hypothetical protein
RA	623,519	C→A	7.5%	E54D (GAG→GAT) ‡	PP_0536 ←	hypothetical protein
RA	623,520	T→G	7.6%	E54A (GAG→GCG) ‡	PP_0536 ←	hypothetical protein
RA	623,522	T→G	6.3%	A53A (GCA→GCC)	PP_0536 ←	hypothetical protein
RA	625,062	C→T	5.4%	intergenic (‑156/+27)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,063	A→T	5.2%	intergenic (‑157/+26)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,064	A→T	6.1%	intergenic (‑158/+25)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	626,556	T→G	6.1%	K213Q (AAG→CAG)	dedA ←	inner membrane protein
RA	635,919	A→T	5.3%	E48V (GAA→GTA)	mpl →	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
RA	644,472	G→A	7.2%	T182I (ACT→ATT)	acoA ←	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha
RA	648,247	A→T	11.6%	intergenic (+16/+75)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,287	A→C	13.0%	intergenic (+56/+35)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,289	A→T	11.3%	intergenic (+58/+33)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,291	G→T	12.8%	intergenic (+60/+31)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	650,231	C→T	9.2%	intergenic (‑75/+25)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	650,236	C→T	8.2%	intergenic (‑80/+20)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	650,238	C→A	9.1%	intergenic (‑82/+18)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	650,239	T→G	8.5%	intergenic (‑83/+17)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	650,241	A→G	8.4%	intergenic (‑85/+15)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	650,246	A→G	8.1%	intergenic (‑90/+10)	accB ← / ← aroQ‑I	acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase
RA	650,845	T→A	6.8%	intergenic (‑134/+46)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	650,846	T→A	6.8%	intergenic (‑135/+45)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	650,848	A→T	6.7%	intergenic (‑137/+43)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	654,403	T→G	6.1%	K114Q (AAG→CAG)	ctpL ←	methyl‑accepting chemotaxis protein CtpL
RA	654,411	G→A	5.5%	A111V (GCC→GTC)	ctpL ←	methyl‑accepting chemotaxis protein CtpL
RA	681,972	C→A	5.3%	S434I (AGC→ATC)	PP_0584 ←	methyl‑accepting chemotaxis transducer
RA	681,975	T→G	5.9%	D433A (GAT→GCT)	PP_0584 ←	methyl‑accepting chemotaxis transducer
RA	689,975	C→T	5.4%	R221H (CGC→CAC)	PP_0591 ←	adenosine deaminase
RA	689,978	A→G	5.4%	V220A (GTG→GCG)	PP_0591 ←	adenosine deaminase
RA	693,590	C→G	6.7%	G151A (GGC→GCC)	PP_0595 ←	LysR family transcriptional regulator
RA	697,214	T→C	12.2%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,225	C→G	9.4%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	9.8%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,722	A→G	54.4%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	14.2%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	14.3%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	14.2%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	704,278	G→T	8.1%	R124L (CGG→CTG)	PP_5745 →	paraquat‑inducible protein A
RA	704,281	A→C	7.6%	Q125P (CAG→CCG)	PP_5745 →	paraquat‑inducible protein A
RA	706,944	C→G	5.5%	intergenic (+120/+126)	PP_0599 → / ← rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
RA	711,488	C→G	5.4%	T429S (ACC→AGC)	ileS →	isoleucine‑‑tRNA ligase
RA	711,493	G→T	5.1%	E431* (GAG→TAG) ‡	ileS →	isoleucine‑‑tRNA ligase
RA	711,494	A→C	5.2%	E431A (GAG→GCG) ‡	ileS →	isoleucine‑‑tRNA ligase
RA	711,499	C→G	6.2%	L433V (CTG→GTG)	ileS →	isoleucine‑‑tRNA ligase
RA	713,096	A→G	7.5%	I29V (ATC→GTC) ‡	lspA →	lipoprotein signal peptidase
RA	713,097	T→A	7.3%	I29N (ATC→AAC) ‡	lspA →	lipoprotein signal peptidase
RA	713,098	C→T	7.2%	I29I (ATC→ATT) ‡	lspA →	lipoprotein signal peptidase
RA	733,646	A→T	6.4%	intergenic (+20/‑27)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,647	A→T	6.5%	intergenic (+21/‑26)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	739,594	T→G	5.2%	T345P (ACG→CCG)	pilC ←	type IV fimbrial assembly protein PilC
RA	756,577	T→C	10.5%	S391S (TCT→TCC)	PP_0646 →	hypothetical protein
RA	793,656	T→C	5.5%	intergenic (‑21/‑203)	PP_0679 ← / → PP_0680	hypothetical protein/ATP‑dependent protease‑like protein
RA	793,657	C→G	5.5%	intergenic (‑22/‑202)	PP_0679 ← / → PP_0680	hypothetical protein/ATP‑dependent protease‑like protein
RA	793,658	G→A	5.5%	intergenic (‑23/‑201)	PP_0679 ← / → PP_0680	hypothetical protein/ATP‑dependent protease‑like protein
RA	796,816	T→A	6.1%	intergenic (+18/‑172)	PP_0681 → / → PP_0682	hypothetical protein/inner membrane protein
RA	796,817	T→A	6.2%	intergenic (+19/‑171)	PP_0681 → / → PP_0682	hypothetical protein/inner membrane protein
RA	802,770	T→C	11.7%	intergenic (+28/‑58)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,771	C→A	11.3%	intergenic (+29/‑57)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,772	T→G	11.8%	intergenic (+30/‑56)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,773	G→A	11.6%	intergenic (+31/‑55)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	814,298	G→A	8.1%	P29S (CCC→TCC)	PP_0700 ←	transmembrane sensor
RA	819,241:1	+C	6.7%	coding (395/627 nt)	PP_0705 →	DNA‑3‑methyladenine glycosylase
RA	819,246	Δ1 bp	6.3%	coding (400/627 nt)	PP_0705 →	DNA‑3‑methyladenine glycosylase
RA	823,548	A→C	5.3%	H352Q (CAT→CAG)	PP_0708 ←	betaine‑aldehyde dehydrogenase
RA	852,159	A→T	10.1%	Q313L (CAG→CTG)	hemA →	glutamyl‑tRNA reductase
RA	852,164	G→C	9.8%	A315P (GCG→CCG) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,165	C→G	9.9%	A315G (GCG→GGG) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,166	G→C	10.0%	A315A (GCG→GCC) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,171	A→T	9.8%	Q317L (CAG→CTG)	hemA →	glutamyl‑tRNA reductase
RA	860,698	G→A	7.7%	intergenic (‑27/+77)	PP_0741 ← / ← PP_0742	hypothetical protein/hypothetical protein
RA	860,699	T→A	7.1%	intergenic (‑28/+76)	PP_0741 ← / ← PP_0742	hypothetical protein/hypothetical protein
RA	860,701	A→T	7.5%	intergenic (‑30/+74)	PP_0741 ← / ← PP_0742	hypothetical protein/hypothetical protein
RA	860,702	C→T	7.0%	intergenic (‑31/+73)	PP_0741 ← / ← PP_0742	hypothetical protein/hypothetical protein
RA	860,707	A→G	6.5%	intergenic (‑36/+68)	PP_0741 ← / ← PP_0742	hypothetical protein/hypothetical protein
RA	860,710	T→A	6.1%	intergenic (‑39/+65)	PP_0741 ← / ← PP_0742	hypothetical protein/hypothetical protein
RA	860,711	T→C	6.5%	intergenic (‑40/+64)	PP_0741 ← / ← PP_0742	hypothetical protein/hypothetical protein
RA	865,197	T→C	5.9%	K210R (AAG→AGG)	upp ←	uracil phosphoribosyltransferase
RA	868,510	G→A	7.5%	L360L (CTG→TTG)	mqo‑I ←	malate:quinone oxidoreductase
RA	868,515	T→C	7.1%	K358R (AAG→AGG)	mqo‑I ←	malate:quinone oxidoreductase
RA	871,871	A→G	7.9%	intergenic (+17/+19)	PP_0755 → / ← PP_0756	hypothetical protein/hypothetical protein
RA	871,872	A→T	7.5%	intergenic (+18/+18)	PP_0755 → / ← PP_0756	hypothetical protein/hypothetical protein
RA	871,873	C→T	8.0%	intergenic (+19/+17)	PP_0755 → / ← PP_0756	hypothetical protein/hypothetical protein
RA	876,015	G→C	11.3%	noncoding (105/142 nt)	PP_mr65 ←	YybP‑YkoY
RA	876,018	G→C	11.3%	noncoding (102/142 nt)	PP_mr65 ←	YybP‑YkoY
RA	898,295	T→G	5.1%	F60C (TTC→TGC)	PP_0781 →	hypothetical protein
RA	902,618	C→G	11.4%	intergenic (+44/+32)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,619	A→C	10.8%	intergenic (+45/+31)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,620	A→T	10.0%	intergenic (+46/+30)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,621	G→T	9.6%	intergenic (+47/+29)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,622	C→G	10.0%	intergenic (+48/+28)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	903,624	A→G	6.8%	intergenic (‑126/‑118)	nadC ← / → PP_0788	quinolinate phosphoribosyltransferase/hypothetical protein
RA	908,703	T→A	6.3%	Q169L (CAG→CTG)	cra ←	catabolite DNA‑binding transcriptional regulator
RA	908,893	C→T	5.2%	E106K (GAG→AAG)	cra ←	catabolite DNA‑binding transcriptional regulator
RA	910,490	A→G	7.9%	K333R (AAG→AGG) ‡	fruB →	PTS fructose transporter subunit EI/HPr/IIA
RA	910,491	G→C	8.2%	K333N (AAG→AAC) ‡	fruB →	PTS fructose transporter subunit EI/HPr/IIA
RA	910,492	C→T	8.2%	L334L (CTG→TTG)	fruB →	PTS fructose transporter subunit EI/HPr/IIA
RA	925,343	G→A	5.6%	A428V (GCC→GTC)	PP_0805 ←	outer membrane efflux protein
RA	938,369	C→G	5.2%	G2418A (GGG→GCG)	PP_0806 ←	surface adhesion protein
RA	941,933	A→G	5.6%	V1230A (GTC→GCC)	PP_0806 ←	surface adhesion protein
RA	941,936	A→T	5.6%	V1229D (GTC→GAC)	PP_0806 ←	surface adhesion protein
RA	941,939	C→T	5.1%	G1228D (GGC→GAC)	PP_0806 ←	surface adhesion protein
RA	953,229	A→G	6.9%	H13R (CAC→CGC) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,230	C→T	6.9%	H13H (CAC→CAT) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,238	G→A	7.1%	G16E (GGG→GAG)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	955,149	A→G	25.0%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	25.4%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	25.0%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	25.0%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	C→T	25.6%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	973,240	G→C	8.8%	G511A (GGT→GCT) ‡	secD →	protein translocase subunit SecD
RA	973,241	T→A	9.5%	G511G (GGT→GGA) ‡	secD →	protein translocase subunit SecD
RA	973,244	T→A	8.7%	I512I (ATT→ATA)	secD →	protein translocase subunit SecD
RA	973,245	G→C	8.9%	A513P (GCC→CCC)	secD →	protein translocase subunit SecD
RA	980,272	T→G	6.4%	S16A (TCC→GCC)	iscA →	copper(I) binding iron‑sulfur cluster assembly protein
RA	980,275:1	+G	6.7%	coding (49/324 nt)	iscA →	copper(I) binding iron‑sulfur cluster assembly protein
RA	980,280	Δ1 bp	6.5%	coding (54/324 nt)	iscA →	copper(I) binding iron‑sulfur cluster assembly protein
RA	980,284	C→A	6.8%	R20S (CGC→AGC)	iscA →	copper(I) binding iron‑sulfur cluster assembly protein
RA	980,749	T→G	5.3%	L64R (CTG→CGG)	hscB →	DnaJ‑like molecular chaperone
RA	980,755	G→C	6.5%	S66T (AGT→ACT)	hscB →	DnaJ‑like molecular chaperone
RA	980,761	C→A	6.9%	P68Q (CCG→CAG)	hscB →	DnaJ‑like molecular chaperone
RA	994,947	T→A	7.3%	intergenic (+26/+99)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	994,948	T→A	7.3%	intergenic (+27/+98)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	1,013,228	A→T	21.5%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,234	C→A	25.1%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,235	A→T	20.8%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,241	G→C	23.6%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	26.5%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	25.9%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	31.1%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	17.2%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,017,836	A→T	6.2%	L9* (TTA→TAA)	PP_5461 ←	hypothetical protein
RA	1,031,374	T→C	5.3%	V27A (GTC→GCC)	regA →	photosynthetic apparatus regulatory protein RegA
RA	1,038,222	C→A	7.0%	P391P (CCG→CCT)	PP_0897 ←	class 1 fumarate hydratase
RA	1,038,225	G→C	7.1%	G390G (GGC→GGG)	PP_0897 ←	class 1 fumarate hydratase
RA	1,038,228	G→A	7.2%	A389A (GCC→GCT)	PP_0897 ←	class 1 fumarate hydratase
RA	1,038,231	T→C	7.1%	P388P (CCA→CCG)	PP_0897 ←	class 1 fumarate hydratase
RA	1,038,234	G→C	7.1%	G387G (GGC→GGG)	PP_0897 ←	class 1 fumarate hydratase
RA	1,038,237	T→G	6.9%	V386V (GTA→GTC)	PP_0897 ←	class 1 fumarate hydratase
RA	1,045,258	T→C	8.3%	intergenic (+31/+75)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,045,262	G→A	8.3%	intergenic (+35/+71)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,045,265	T→C	7.8%	intergenic (+38/+68)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,045,269	G→A	7.8%	intergenic (+42/+64)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,049,601	T→A	5.6%	intergenic (‑2/+154)	PP_0907 ← / ← PP_0908	RND transporter membrane fusion protein‑like protein/hypothetical protein
RA	1,051,965	A→G	7.8%	L468L (TTG→CTG)	PP_0910 ←	hypothetical protein
RA	1,051,969	A→G	8.2%	A466A (GCT→GCC) ‡	PP_0910 ←	hypothetical protein
RA	1,051,970	G→C	7.9%	A466G (GCT→GGT) ‡	PP_0910 ←	hypothetical protein
RA	1,051,971	C→T	8.2%	A466T (GCT→ACT) ‡	PP_0910 ←	hypothetical protein
RA	1,051,975	C→T	8.2%	Q464Q (CAG→CAA)	PP_0910 ←	hypothetical protein
RA	1,054,462	A→C	6.8%	M1G (GTG→GGG) †‡	PP_0912 ←	hypothetical protein
RA	1,054,463	C→T	6.7%	M1M (GTG→ATG) †‡	PP_0912 ←	hypothetical protein
RA	1,054,464	A→T	6.8%	intergenic (‑1/+36)	PP_0912 ← / ← PP_0913	hypothetical protein/hypothetical protein
RA	1,054,465	A→G	6.8%	intergenic (‑2/+35)	PP_0912 ← / ← PP_0913	hypothetical protein/hypothetical protein
RA	1,054,466	G→T	6.5%	intergenic (‑3/+34)	PP_0912 ← / ← PP_0913	hypothetical protein/hypothetical protein
RA	1,058,712	C→A	5.7%	S59I (AGC→ATC)	sodB ←	superoxide dismutase
RA	1,058,715	T→G	5.9%	K58T (AAG→ACG)	sodB ←	superoxide dismutase
RA	1,058,717	G→C	5.8%	V57V (GTC→GTG) ‡	sodB ←	superoxide dismutase
RA	1,058,719	C→A	5.9%	V57F (GTC→TTC) ‡	sodB ←	superoxide dismutase
RA	1,058,722	T→G	6.5%	I56L (ATC→CTC)	sodB ←	superoxide dismutase
RA	1,070,246:1	+GA	100%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,109,225	G→T	5.7%	L10I (CTC→ATC)	PP_0968 ←	hypothetical protein
RA	1,111,300	T→C	13.0%	intergenic (+21/‑89)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,305	G→T	11.7%	intergenic (+26/‑84)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,308	C→G	10.2%	intergenic (+29/‑81)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,310	T→A	10.3%	intergenic (+31/‑79)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,312	C→G	10.3%	intergenic (+33/‑77)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,315	A→C	9.8%	intergenic (+36/‑74)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,320	G→A	9.1%	intergenic (+41/‑69)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,116,273	G→A	9.8%	T520I (ACC→ATC)	valS ←	valine‑‑tRNA ligase
RA	1,116,277	G→T	10.6%	L519M (CTG→ATG)	valS ←	valine‑‑tRNA ligase
RA	1,116,278	C→G	9.1%	M518I (ATG→ATC) ‡	valS ←	valine‑‑tRNA ligase
RA	1,116,279	A→C	9.1%	M518R (ATG→AGG) ‡	valS ←	valine‑‑tRNA ligase
RA	1,116,283	T→C	9.1%	I517V (ATC→GTC)	valS ←	valine‑‑tRNA ligase
RA	1,120,934	T→C	6.5%	V125V (GTT→GTC)	PP_0982 →	YjgP/YjgQ family permease
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,129,742	T→C	6.2%	P68P (CCA→CCG)	gcvH‑I ←	glycine cleavage system protein H
RA	1,129,753	C→T	6.4%	V65M (GTG→ATG)	gcvH‑I ←	glycine cleavage system protein H
RA	1,166,230:1	+A	7.6%	coding (615/1470 nt)	zwfA →	glucose 6‑phosphate‑1‑dehydrogenase
RA	1,166,235	Δ1 bp	7.6%	coding (620/1470 nt)	zwfA →	glucose 6‑phosphate‑1‑dehydrogenase
RA	1,169,305	T→C	9.4%	I369V (ATC→GTC)	leuA ←	2‑isopropylmalate synthase
RA	1,169,306	G→A	9.2%	D368D (GAC→GAT)	leuA ←	2‑isopropylmalate synthase
RA	1,196,067	G→C	9.7%	G43A (GGC→GCC)	xcpQ →	type II secretion pathway protein XcpQ
RA	1,212,521	C→T	100%	intergenic (‑55/+133)	PP_1060 ← / ← PP_1061	glutamate synthase large subunit/ATP‑dependent DNA helicase
RA	1,224,601	A→C	6.4%	M26R (ATG→AGG)	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,229,547	G→C	9.5%	Q909H (CAG→CAC)	PP_1072 →	leucine‑rich repeat‑containing protein
RA	1,244,369	C→G	10.6%	G39A (GGT→GCT)	rnt ←	ribonuclease T
RA	1,250,523	A→G	7.0%	Y65Y (TAT→TAC) ‡	nth ←	DNA glycosylase/apyrimidinic (AP) lyase
RA	1,250,525	A→T	6.8%	Y65N (TAT→AAT) ‡	nth ←	DNA glycosylase/apyrimidinic (AP) lyase
RA	1,250,528	T→A	6.9%	I64F (ATC→TTC)	nth ←	DNA glycosylase/apyrimidinic (AP) lyase
RA	1,251,589:1	+G	6.8%	coding (253/603 nt)	PP_1094 ←	electron transport complex protein
RA	1,251,595	T→C	6.2%	M83V (ATG→GTG)	PP_1094 ←	electron transport complex protein
RA	1,251,596	A→T	6.3%	T82T (ACT→ACA) ‡	PP_1094 ←	electron transport complex protein
RA	1,251,597	G→A	6.4%	T82I (ACT→ATT) ‡	PP_1094 ←	electron transport complex protein
RA	1,251,603	Δ1 bp	6.2%	coding (239/603 nt)	PP_1094 ←	electron transport complex protein
RA	1,256,881	A→T	6.0%	noncoding (434/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,882	G→T	6.0%	noncoding (433/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,883	A→C	6.7%	noncoding (432/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,884	A→T	5.7%	noncoding (431/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,275,084	G→C	21.3%	intergenic (‑281/+31)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,313,848	G→A	6.1%	A270V (GCT→GTT)	rapA ←	RNA polymerase‑associated protein RapA
RA	1,321,510	C→A	5.7%	K407N (AAG→AAT)	PP_1154 ←	sensory box protein
RA	1,322,861	A→C	5.6%	I332S (ATC→AGC)	PP_1155 ←	YaiC/YhcK/ArdA family protein
RA	1,327,121	C→T	55.4%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,354,800	A→T	6.1%	Y193N (TAC→AAC)	nrdA ←	ribonucleoside‑diphosphate reductase subunit alpha
RA	1,366,219	G→C	7.6%	R161G (CGT→GGT)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,221	G→C	7.6%	A160G (GCG→GGG)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,229	T→C	7.6%	E157E (GAA→GAG) ‡	PP_1191 ←	S4 domain‑containing protein
RA	1,366,231	C→G	7.7%	E157Q (GAA→CAA) ‡	PP_1191 ←	S4 domain‑containing protein
RA	1,366,232	C→G	7.7%	L156L (CTG→CTC) ‡	PP_1191 ←	S4 domain‑containing protein
RA	1,366,234	G→A	7.8%	L156L (CTG→TTG) ‡	PP_1191 ←	S4 domain‑containing protein
RA	1,366,242	G→C	6.7%	P153R (CCC→CGC)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,548	T→G	7.0%	E51A (GAG→GCG)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,551	A→T	6.9%	V50D (GTC→GAC)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,554	C→A	7.1%	R49L (CGC→CTC)	PP_1191 ←	S4 domain‑containing protein
RA	1,376,321	A→T	13.3%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,322	G→C	13.3%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,323	A→T	13.4%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,384,896	C→T	5.6%	M45I (ATG→ATA)	proS ←	proline‑‑tRNA ligase
RA	1,385,573	C→A	6.8%	G295V (GGC→GTC)	oprD ←	basic amino acid specific porin OprD
RA	1,388,299	T→C	6.9%	Q64R (CAG→CGG)	PP_1209 ←	cold‑shock protein
RA	1,392,877	T→C	11.1%	intergenic (+47/‑139)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,915	T→C	14.3%	intergenic (+85/‑101)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,917	A→G	14.3%	intergenic (+87/‑99)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,919	G→A	13.8%	intergenic (+89/‑97)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,921:1	+A	13.5%	intergenic (+91/‑95)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,927	C→G	13.5%	intergenic (+97/‑89)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,933	Δ1 bp	14.3%	intergenic (+103/‑83)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,936	T→C	14.3%	intergenic (+106/‑80)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,938	C→T	13.5%	intergenic (+108/‑78)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,940	G→A	12.5%	intergenic (+110/‑76)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,403,590	G→A	19.2%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,591	T→C	19.3%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,410,289	T→A	5.5%	I320N (ATT→AAT)	nadA →	quinolinate synthase iron‑sulfur cluster subunit
RA	1,419,548:1	+C	100%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,425,650	T→C	6.6%	intergenic (+52/‑453)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,655	C→T	6.4%	intergenic (+57/‑448)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,656	A→G	6.4%	intergenic (+58/‑447)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,661	G→A	6.5%	intergenic (+63/‑442)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,449,139	T→C	9.2%	*287R (TGA→CGA) ‡	PP_1266 →	fusaric acid resistance protein
RA	1,449,140	G→A	9.2%	*287* (TGA→TAA) ‡	PP_1266 →	fusaric acid resistance protein
RA	1,450,561	G→A	9.5%	intergenic (‑18/‑256)	PP_1269 ← / → PP_1270	universal stress protein family protein/LysR family transcriptional regulator
RA	1,463,318	C→T	5.0%	L288L (TTG→TTA)	algL ←	alginate lyase
RA	1,470,044	A→T	7.9%	C33* (TGT→TGA) ‡	algK ←	alginate biosynthesis protein AlgK
RA	1,470,045	C→G	7.7%	C33S (TGT→TCT) ‡	algK ←	alginate biosynthesis protein AlgK
RA	1,470,046	A→T	8.0%	C33S (TGT→AGT) ‡	algK ←	alginate biosynthesis protein AlgK
RA	1,472,712	G→C	5.2%	Q39E (CAG→GAG)	alg8 ←	glycosyltransferase Alg8
RA	1,472,713	C→G	5.2%	S38S (TCG→TCC) ‡	alg8 ←	glycosyltransferase Alg8
RA	1,472,714	G→C	5.2%	S38W (TCG→TGG) ‡	alg8 ←	glycosyltransferase Alg8
RA	1,487,099	A→G	8.7%	intergenic (+115/+15)	yhdZ → / ← degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
RA	1,487,100	A→T	8.5%	intergenic (+116/+14)	yhdZ → / ← degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
RA	1,487,101	C→T	8.5%	intergenic (+117/+13)	yhdZ → / ← degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
RA	1,488,057	T→A	5.9%	K89M (AAG→ATG)	degS ←	serine endoprotease DegS
RA	1,491,137	G→C	5.9%	S267T (AGT→ACT)	cysNC →	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
RA	1,491,142:1	+A	6.5%	coding (805/1902 nt)	cysNC →	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,506,923	A→G	15.4%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,927	G→A	15.0%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,930	T→C	15.4%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,934	C→T	15.4%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,526,580	T→A	7.3%	I256N (ATT→AAT)	ddlB →	D‑alanine‑‑D‑alanine ligase B
RA	1,527,744	G→A	8.0%	E29K (GAA→AAA)	ftsA →	cell division protein FtsA
RA	1,534,879	G→A	6.1%	intergenic (+70/‑113)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,881	T→G	6.7%	intergenic (+72/‑111)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,883	C→T	5.9%	intergenic (+74/‑109)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,889	T→C	7.7%	intergenic (+80/‑103)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,893	C→T	6.3%	intergenic (+84/‑99)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,898	A→G	6.3%	intergenic (+89/‑94)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,902	G→A	6.3%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,908	A→G	5.0%	intergenic (+99/‑84)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,912	T→C	5.0%	intergenic (+103/‑80)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,535,859	G→T	7.1%	G290C (GGC→TGC)	argJ →	glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,535,862	A→C	7.0%	N291H (AAC→CAC)	argJ →	glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,543,816	C→T	6.1%	P207L (CCG→CTG)	mdfA →	multidrug MFS transporter
RA	1,555,388	A→C	8.1%	intergenic (+26/+48)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,389	T→A	8.2%	intergenic (+27/+47)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,390	G→T	8.1%	intergenic (+28/+46)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,567,255	A→T	5.7%	intergenic (+59/‑262)	pcaR → / → pcaK	pca regulon transcriptional regulator/4‑hydroxybenzoate transporter
RA	1,567,257	A→T	5.9%	intergenic (+61/‑260)	pcaR → / → pcaK	pca regulon transcriptional regulator/4‑hydroxybenzoate transporter
RA	1,567,259	A→T	5.9%	intergenic (+63/‑258)	pcaR → / → pcaK	pca regulon transcriptional regulator/4‑hydroxybenzoate transporter
RA	1,572,889	C→A	9.1%	A337A (GCC→GCA)	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,572,890	C→G	9.1%	L338V (CTG→GTG) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,572,891	T→G	8.9%	L338R (CTG→CGG) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,576,756	G→C	10.4%	intergenic (‑276/+37)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,576,757	A→T	10.6%	intergenic (‑277/+36)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,576,760	A→T	10.2%	intergenic (‑280/+33)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,576,761	G→C	12.0%	intergenic (‑281/+32)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,578,008	G→C	6.1%	R80R (CGC→CGG) ‡	ttgC ←	efflux pump outer membrane protein TtgC
RA	1,578,009	C→T	6.1%	R80H (CGC→CAC) ‡	ttgC ←	efflux pump outer membrane protein TtgC
RA	1,578,012	A→G	5.7%	L79P (CTG→CCG) ‡	ttgC ←	efflux pump outer membrane protein TtgC
RA	1,578,013	G→C	5.8%	L79V (CTG→GTG) ‡	ttgC ←	efflux pump outer membrane protein TtgC
RA	1,581,266	G→T	100%	A44D (GCC→GAC)	ttgB ←	efflux pump membrane protein TtgB
RA	1,584,487	A→T	6.6%	L176Q (CTG→CAG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,491	C→G	6.8%	G175R (GGG→CGG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,493	A→T	6.6%	L174Q (CTG→CAG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,495	C→G	6.6%	P173P (CCG→CCC)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,588,522	G→T	5.2%	R193R (CGG→AGG)	PP_1393 ←	transcriptional regulator
RA	1,591,965	G→C	9.1%	intergenic (‑72/‑131)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,982	C→A	16.6%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,987	T→G	18.3%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,607,417	Δ1 bp	5.7%	coding (117/888 nt)	PP_1408 ←	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase
RA	1,620,349	G→C	6.8%	intergenic (‑115/‑86)	opdH ← / → tctD	tricarboxylate‑specific outer membrane porin/transcriptional regulator TctD
RA	1,621,877	T→C	7.2%	L264P (CTG→CCG) ‡	PP_1421 →	sensor histidine kinase TctE
RA	1,621,878	G→A	7.2%	L264L (CTG→CTA) ‡	PP_1421 →	sensor histidine kinase TctE
RA	1,622,907	C→G	6.6%	G150G (GGG→GGC)	PP_1422 ←	hypothetical protein
RA	1,622,914	A→T	6.5%	L148* (TTG→TAG) ‡	PP_1422 ←	hypothetical protein
RA	1,622,915	A→G	6.4%	L148L (TTG→CTG) ‡	PP_1422 ←	hypothetical protein
RA	1,622,921	C→G	9.3%	A146P (GCC→CCC)	PP_1422 ←	hypothetical protein
RA	1,625,207	G→T	10.4%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,625,208	A→C	10.8%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,628,993	T→G	8.6%	M168R (ATG→AGG) ‡	mucB →	sigma factor AlgU regulator MucB
RA	1,628,994	G→C	9.9%	M168I (ATG→ATC) ‡	mucB →	sigma factor AlgU regulator MucB
RA	1,628,995	C→A	8.7%	L169I (CTC→ATC)	mucB →	sigma factor AlgU regulator MucB
RA	1,633,545	T→G	6.9%	V165G (GTC→GGC)	lepB →	signal peptidase I
RA	1,637,315	T→C	9.1%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,325	A→T	9.4%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,326	A→T	9.4%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,336	G→A	12.0%	intergenic (+45/+21)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,344	C→T	8.3%	intergenic (+53/+13)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,264	G→A	7.4%	intergenic (‑92/+60)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,271	G→C	10.2%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,277	G→C	9.8%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,278	C→G	10.0%	intergenic (‑106/+46)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,279	G→C	10.0%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,285	G→C	9.1%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,661,477	C→A	5.7%	A50D (GCC→GAC)	PP_1456 →	membrane protein
RA	1,661,480	T→A	5.5%	L51Q (CTG→CAG)	PP_1456 →	membrane protein
RA	1,661,483	T→G	7.4%	V52G (GTC→GGC)	PP_1456 →	membrane protein
RA	1,665,249	T→G	5.7%	I207L (ATC→CTC)	PP_1459 ←	CBS domain‑containing protein
RA	1,670,626	T→C	6.2%	intergenic (+49/‑46)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,670,628	C→A	6.2%	intergenic (+51/‑44)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,671,162	A→C	5.4%	V576G (GTA→GGA)	PP_1467 ←	NhaP‑type Na+(K+)/H+ antiporter
RA	1,681,667	A→T	6.4%	E62D (GAA→GAT)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,681,669	C→G	7.2%	A63G (GCC→GGC)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,681,671	A→T	6.2%	I64F (ATC→TTC)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,682,856	T→A	6.2%	L459M (TTG→ATG)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,683,248	C→G	8.7%	intergenic (+57/‑174)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,683,251	C→G	9.1%	intergenic (+60/‑171)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,685,607	T→C	7.0%	D391G (GAT→GGT)	patD ←	medium chain aldehyde dehydrogenase
RA	1,685,610	G→A	7.1%	T390I (ACC→ATC)	patD ←	medium chain aldehyde dehydrogenase
RA	1,694,776	G→C	5.5%	G248R (GGC→CGC) ‡	wspC →	biofilm formation methyltransferase WspC
RA	1,694,777	G→C	5.5%	G248A (GGC→GCC) ‡	wspC →	biofilm formation methyltransferase WspC
RA	1,703,248	A→G	33.0%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	29.3%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	32.4%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,704,624	G→C	11.9%	intergenic (+11/‑12)	PP_1498 → / → PP_1499	lipoprotein/hypothetical protein
RA	1,704,636	T→A	12.4%	M1M (TTG→ATG) †‡	PP_1499 →	hypothetical protein
RA	1,704,637	T→A	12.7%	M1* (TTG→TAG) †‡	PP_1499 →	hypothetical protein
RA	1,707,227	G→C	8.7%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,230	G→C	7.6%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,951	T→A	10.7%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,952	T→A	11.1%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,751,079	T→G	20.8%	P146P (CCT→CCG)	PP_1551 →	replication protein O
RA	1,751,080	T→A	14.6%	S147T (TCG→ACG) ‡	PP_1551 →	replication protein O
RA	1,751,081	C→A	17.0%	S147* (TCG→TAG) ‡	PP_1551 →	replication protein O
RA	1,786,022	T→A	14.3%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,023	T→A	14.3%	intergenic (+39/‑147)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,024	T→A	14.2%	intergenic (+40/‑146)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,961	C→T	6.9%	G264G (GGC→GGT)	tsf →	elongation factor Ts
RA	1,795,404	A→G	5.4%	I73V (ATC→GTC)	PP_1600 →	Skp‑like protein
RA	1,802,073	Δ1 bp	5.3%	coding (2057/3525 nt)	dnaEA →	DNA polymerase III subunit alpha
RA	1,802,847	T→C	6.9%	M944T (ATG→ACG)	dnaEA →	DNA polymerase III subunit alpha
RA	1,810,335	T→G	16.0%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,810,336	C→A	11.9%	intergenic (+97/‑72)	eno → / → ftsB	enolase/cell division protein
RA	1,814,539	A→T	5.6%	intergenic (+39/‑74)	frmC → / → ispF	S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase/2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
RA	1,814,540	C→G	5.9%	intergenic (+40/‑73)	frmC → / → ispF	S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase/2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
RA	1,835,637	A→G	7.8%	intergenic (‑79/+53)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,645	T→G	6.8%	intergenic (‑87/+45)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,646	T→C	7.1%	intergenic (‑88/+44)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,647	G→A	7.3%	intergenic (‑89/+43)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,648	C→A	7.1%	intergenic (‑90/+42)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,656	C→T	7.1%	intergenic (‑98/+34)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,849,811	C→T	6.4%	R118C (CGC→TGC)	rlmD →	23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD
RA	1,859,114	A→T	9.4%	intergenic (+34/+67)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,863,240	T→A	7.6%	L309Q (CTG→CAG)	PP_1666 →	hypothetical protein
RA	1,864,750	T→C	5.6%	A28A (GCT→GCC)	hda →	DnaA regulatory inactivator Hda
RA	1,864,753	G→A	5.7%	A29A (GCG→GCA)	hda →	DnaA regulatory inactivator Hda
RA	1,878,603	C→T	8.0%	A242V (GCC→GTC)	PP_1684 →	transporter
RA	1,878,605	T→A	7.4%	Y243N (TAC→AAC)	PP_1684 →	transporter
RA	1,879,890	G→A	10.7%	intergenic (+74/+62)	PP_1686 → / ← PP_1687	glutathione peroxidase/hypothetical protein
RA	1,879,891	C→A	10.9%	intergenic (+75/+61)	PP_1686 → / ← PP_1687	glutathione peroxidase/hypothetical protein
RA	1,879,894	T→G	11.3%	intergenic (+78/+58)	PP_1686 → / ← PP_1687	glutathione peroxidase/hypothetical protein
RA	1,879,895	T→C	12.2%	intergenic (+79/+57)	PP_1686 → / ← PP_1687	glutathione peroxidase/hypothetical protein
RA	1,892,526	C→G	6.9%	intergenic (+36/‑59)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,892,527	T→C	6.9%	intergenic (+37/‑58)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,892,529	C→G	6.9%	intergenic (+39/‑56)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,916,384	T→G	7.1%	intergenic (+86/‑29)	PP_1715 → / → PP_1716	hypothetical protein/Cro/CI family transcriptional regulator
RA	1,916,385	G→C	7.8%	intergenic (+87/‑28)	PP_1715 → / → PP_1716	hypothetical protein/Cro/CI family transcriptional regulator
RA	1,916,386	C→A	6.9%	intergenic (+88/‑27)	PP_1715 → / → PP_1716	hypothetical protein/Cro/CI family transcriptional regulator
RA	1,918,257	T→C	6.3%	intergenic (‑33/+85)	PP_1718 ← / ← prc	EAL domain‑containing diguanylate phosphodiesterase/tail‑specific protease Prc
RA	1,918,259	C→G	6.4%	intergenic (‑35/+83)	PP_1718 ← / ← prc	EAL domain‑containing diguanylate phosphodiesterase/tail‑specific protease Prc
RA	1,921,549	T→A	12.9%	intergenic (+24/+37)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,921,550	T→A	15.4%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,955,191	T→G	9.0%	intergenic (+21/‑172)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,195	G→A	9.2%	intergenic (+25/‑168)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,198	G→C	7.0%	intergenic (+28/‑165)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,199	C→T	7.0%	intergenic (+29/‑164)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,209	T→A	9.1%	intergenic (+39/‑154)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,210	T→A	9.0%	intergenic (+40/‑153)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,220	A→G	7.2%	intergenic (+50/‑143)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,224	T→C	7.7%	intergenic (+54/‑139)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,228	C→A	7.4%	intergenic (+58/‑135)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,963,789	A→T	7.7%	M1M (ATG→TTG) †	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,975,578	T→A	5.8%	I170I (ATT→ATA)	pheA →	bifunctional chorismate mutase/prephenate dehydratase
RA	1,975,827	C→G	5.2%	T253T (ACC→ACG)	pheA →	bifunctional chorismate mutase/prephenate dehydratase
RA	1,976,785	T→G	10.5%	F150C (TTC→TGC)	PP_1770 →	3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	1,976,789	C→G	11.0%	R151R (CGC→CGG)	PP_1770 →	3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	1,976,793	C→A	14.0%	H153N (CAC→AAC)	PP_1770 →	3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	1,977,125	T→C	7.7%	S263S (AGT→AGC)	PP_1770 →	3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	1,978,708	C→G	9.0%	F45L (TTC→TTG)	cmk →	cytidylate kinase
RA	1,987,438	T→C	7.0%	D231D (GAT→GAC)	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,440	T→C	7.0%	L232S (TTG→TCG) ‡	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,441	G→A	6.9%	L232L (TTG→TTA) ‡	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,443	G→A	6.8%	S233N (AGT→AAT)	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,989,565	A→T	6.4%	E272V (GAG→GTG)	PP_1780 →	mannosyltransferase
RA	1,989,571	G→C	7.3%	G274A (GGT→GCT)	PP_1780 →	mannosyltransferase
RA	1,991,155	T→G	7.5%	L802* (TTA→TGA)	PP_1780 →	mannosyltransferase
RA	1,991,164	C→G	8.9%	A805G (GCC→GGC) ‡	PP_1780 →	mannosyltransferase
RA	1,991,165	C→G	8.9%	A805A (GCC→GCG) ‡	PP_1780 →	mannosyltransferase
RA	1,991,166	A→C	9.1%	N806H (AAC→CAC)	PP_1780 →	mannosyltransferase
RA	2,039,004	A→G	6.7%	L159S (TTG→TCG)	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,039,008	G→A	6.7%	L158L (CTG→TTG)	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,039,009	G→C	6.3%	N157K (AAC→AAG) ‡	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,039,010	T→C	6.7%	N157S (AAC→AGC) ‡	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,039,014	C→T	7.1%	D156N (GAC→AAC)	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,048,828	G→T	6.9%	intergenic (+67/+72)	PP_1821 → / ← PP_1822	glutathione S‑transferase family protein/hypothetical protein
RA	2,048,829	C→G	6.9%	intergenic (+68/+71)	PP_1821 → / ← PP_1822	glutathione S‑transferase family protein/hypothetical protein
RA	2,048,830	A→C	8.1%	intergenic (+69/+70)	PP_1821 → / ← PP_1822	glutathione S‑transferase family protein/hypothetical protein
RA	2,052,785	A→T	5.2%	intergenic (+17/+33)	prmB → / ← PP_1828	N5‑glutamine S‑adenosyl‑L‑methionine‑dependent methyltransferase/hypothetical protein
RA	2,052,786	A→C	5.2%	intergenic (+18/+32)	prmB → / ← PP_1828	N5‑glutamine S‑adenosyl‑L‑methionine‑dependent methyltransferase/hypothetical protein
RA	2,053,362	T→A	5.6%	K80I (AAA→ATA)	PP_1828 ←	hypothetical protein
RA	2,061,893	G→T	10.0%	V270L (GTG→TTG)	PP_1838 →	membrane protein
RA	2,062,850	T→C	7.8%	C589R (TGC→CGC) ‡	PP_1838 →	membrane protein
RA	2,062,851	G→A	7.7%	C589Y (TGC→TAC) ‡	PP_1838 →	membrane protein
RA	2,062,856	G→T	7.3%	G591W (GGG→TGG)	PP_1838 →	membrane protein
RA	2,068,151	A→T	16.6%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,068,152	A→T	16.1%	intergenic (‑97/+24)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,081,115	A→C	6.4%	intergenic (+33/+82)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,083,641	T→G	5.0%	F99V (TTC→GTC)	PP_1862 →	membrane protein
RA	2,087,333	C→G	6.4%	intergenic (+146/+772)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,334	C→G	6.3%	intergenic (+147/+771)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,102,999	C→G	21.9%	noncoding (35/76 nt)	PP_t23 →	tRNA‑Gly
RA	2,104,697	A→G	10.5%	F63L (TTC→CTC)	PP_1879 ←	hypothetical protein
RA	2,104,698	C→T	10.7%	E62E (GAG→GAA)	PP_1879 ←	hypothetical protein
RA	2,116,508	A→G	8.7%	N62D (AAT→GAT)	PP_1884 →	hypothetical protein
RA	2,128,229	A→T	7.5%	A1200A (GCA→GCT)	PP_1887 →	hypothetical protein
RA	2,132,902	A→T	7.0%	V37E (GTA→GAA)	PP_1890 ←	type I pili chaperone protein FimC
RA	2,134,271	A→C	5.4%	intergenic (‑37/+32)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,139,622	T→G	7.5%	Q167H (CAA→CAC)	PP_5481 ←	hypothetical protein
RA	2,139,628	A→T	7.6%	R165R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,139,631	A→T	7.6%	R164R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,139,637	C→A	7.7%	Q162H (CAG→CAT)	PP_5481 ←	hypothetical protein
RA	2,147,208	T→G	5.1%	intergenic (+81/+36)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,147,209	T→C	5.0%	intergenic (+82/+35)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,147,211	C→A	5.3%	intergenic (+84/+33)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,154,403	G→A	8.1%	S123S (AGC→AGT)	PP_1909 ←	septum formation protein
RA	2,163,435	T→A	6.1%	I99N (ATT→AAT)	PP_5482 →	hypothetical protein
RA	2,171,651	T→C	6.4%	intergenic (+186/+217)	PP_5484 → / ← PP_1924	hypothetical protein/phosphinothricin N‑acetyltransferase
RA	2,173,009	T→A	8.9%	Q165H (CAA→CAT) ‡	PP_1925 ←	monooxygenase
RA	2,173,010	T→A	9.0%	Q165L (CAA→CTA) ‡	PP_1925 ←	monooxygenase
RA	2,178,240	A→T	7.0%	Q159L (CAG→CTG)	PP_1931 →	hypothetical protein
RA	2,178,245	A→T	7.4%	K161* (AAG→TAG) ‡	PP_1931 →	hypothetical protein
RA	2,178,246	A→G	7.4%	K161R (AAG→AGG) ‡	PP_1931 →	hypothetical protein
RA	2,185,785	C→G	5.6%	R608R (CGG→CGC)	PP_1936 ←	membrane protein
RA	2,189,751	A→C	6.4%	L206L (CTA→CTC)	PP_1937 →	helicase
RA	2,189,752	G→T	6.4%	E207* (GAG→TAG)	PP_1937 →	helicase
RA	2,191,853	A→G	11.7%	Q907R (CAG→CGG)	PP_1937 →	helicase
RA	2,191,856	C→T	11.4%	P908L (CCG→CTG)	PP_1937 →	helicase
RA	2,199,963:1	+C	7.7%	coding (829/1278 nt)	PP_1944 →	aminomethyltransferase
RA	2,223,369	G→C	10.4%	P393R (CCG→CGG)	PP_1962 ←	site‑specific recombinase
RA	2,223,378	G→C	10.0%	P390R (CCG→CGG)	PP_1962 ←	site‑specific recombinase
RA	2,237,678	C→G	16.3%	A302A (GCG→GCC) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,237,679	G→C	16.4%	A302G (GCG→GGG) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,237,680	C→G	16.0%	A302P (GCG→CCG) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,241,291	C→G	10.7%	intergenic (+38/‑243)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,241,300	A→G	8.0%	intergenic (+47/‑234)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,241	C→T	9.2%	intergenic (+30/+61)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,246,242	A→G	9.4%	intergenic (+31/+60)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,262,076	C→T	7.1%	L888L (CTC→CTT)	fimV →	motility protein FimV
RA	2,262,080	G→C	7.1%	E890Q (GAA→CAA)	fimV →	motility protein FimV
RA	2,262,083	G→T	7.1%	V891L (GTG→TTG) ‡	fimV →	motility protein FimV
RA	2,262,085	G→C	7.0%	V891V (GTG→GTC) ‡	fimV →	motility protein FimV
RA	2,264,085	C→T	100%	S12L (TCG→TTG)	accD →	acetyl‑CoA carboxylase carboxyltransferase subunit beta
RA	2,264,419	G→A	8.9%	P123P (CCG→CCA)	accD →	acetyl‑CoA carboxylase carboxyltransferase subunit beta
RA	2,266,201	T→C	5.9%	W421R (TGG→CGG)	folC →	bifunctional folypolyglutamate synthase/dihydrofolate synthase
RA	2,271,666	C→T	9.9%	intergenic (+50/‑50)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,271,667	A→G	10.0%	intergenic (+51/‑49)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,271,674:1	+T	9.6%	intergenic (+58/‑42)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,273,062	C→G	13.0%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,066	A→T	12.6%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,070	C→G	12.3%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,282,779	C→A	16.1%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,284,012	A→G	5.4%	Q71R (CAG→CGG)	ppnK →	inorganic polyphosphate/ATP‑NAD kinase
RA	2,287,681	T→A	8.8%	Y270N (TAC→AAC)	PP_2016 →	hypothetical protein
RA	2,287,684	C→T	8.9%	Q271* (CAG→TAG) ‡	PP_2016 →	hypothetical protein
RA	2,287,685	A→G	8.8%	Q271R (CAG→CGG) ‡	PP_2016 →	hypothetical protein
RA	2,287,688	T→A	8.9%	L272* (TTG→TAG)	PP_2016 →	hypothetical protein
RA	2,296,432	G→T	12.2%	L19M (CTG→ATG)	PP_2023 ←	glutathione S‑transferase family protein
RA	2,300,171	C→G	7.0%	A396P (GCC→CCC)	sbcD ←	exonuclease subunit SbcD
RA	2,311,048	G→A	7.6%	V267I (GTA→ATA) ‡	PP_2033 →	hypothetical protein
RA	2,311,049	T→C	7.6%	V267A (GTA→GCA) ‡	PP_2033 →	hypothetical protein
RA	2,318,784	G→T	9.5%	Q342H (CAG→CAT)	PP_2039 →	acyl‑CoA dehydrogenase
RA	2,329,762	A→C	8.7%	I39L (ATC→CTC)	PP_2048 →	acyl‑CoA dehydrogenase
RA	2,329,767	T→C	8.9%	L40L (CTT→CTC)	PP_2048 →	acyl‑CoA dehydrogenase
RA	2,329,768	G→A	8.9%	E41K (GAG→AAG)	PP_2048 →	acyl‑CoA dehydrogenase
RA	2,329,773	G→T	9.1%	E42D (GAG→GAT)	PP_2048 →	acyl‑CoA dehydrogenase
RA	2,336,498	A→T	10.7%	intergenic (‑42/+38)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,499	A→G	10.8%	intergenic (‑43/+37)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,340,703	A→C	8.4%	intergenic (+37/‑78)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,340,709	T→C	7.1%	intergenic (+43/‑72)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,342,178	T→A	6.7%	T10T (ACT→ACA)	PP_2058 →	porin
RA	2,342,179	T→A	7.3%	C11S (TGT→AGT)	PP_2058 →	porin
RA	2,370,991	C→G	5.6%	A1270G (GCC→GGC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,378,649	T→A	6.5%	H68Q (CAT→CAA)	PP_2086 →	CrfX family protein
RA	2,378,650	G→C	6.4%	V69L (GTT→CTT) ‡	PP_2086 →	CrfX family protein
RA	2,378,651	T→A	6.3%	V69D (GTT→GAT) ‡	PP_2086 →	CrfX family protein
RA	2,386,384	A→C	8.3%	R240R (CGT→CGG)	PP_2094 ←	nitrate‑binding protein NasS
RA	2,386,387	G→T	9.6%	A239A (GCC→GCA)	PP_2094 ←	nitrate‑binding protein NasS
RA	2,389,132	G→A	7.2%	intergenic (‑365/‑8)	PP_mr31 ← / → rlmKL	rmf regulatory region/23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,389,141	T→C	8.4%	M1T (ATG→ACG) †	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,389,144	G→A	8.5%	R2H (CGT→CAT)	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,397,172	A→C	7.5%	F829V (TTC→GTC)	PP_2100 ←	two‑component system sensor protein
RA	2,397,173	G→C	9.1%	R828R (CGC→CGG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,177	A→T	6.6%	L827Q (CTG→CAG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,181	G→C	7.1%	P826A (CCG→GCG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,182	G→T	7.1%	D825E (GAC→GAA)	PP_2100 ←	two‑component system sensor protein
RA	2,401,849	T→C	9.3%	K14E (AAA→GAA)	dgt ←	deoxyguanosinetriphosphate triphosphohydrolase‑like protein
RA	2,402,311	A→T	7.5%	L19Q (CTG→CAG)	PP_2103 ←	hypothetical protein
RA	2,402,317	Δ1 bp	7.6%	coding (50/330 nt)	PP_2103 ←	hypothetical protein
RA	2,414,824	A→G	5.9%	K8E (AAG→GAG)	PP_2115 →	hypothetical protein
RA	2,414,830	T→G	6.2%	C10G (TGC→GGC)	PP_2115 →	hypothetical protein
RA	2,415,310	A→T	5.5%	intergenic (+46/‑15)	tusA‑II → / → pdxB	sulfurtransferase/erythronate‑4‑phosphate dehydrogenase
RA	2,415,312	A→T	5.5%	intergenic (+48/‑13)	tusA‑II → / → pdxB	sulfurtransferase/erythronate‑4‑phosphate dehydrogenase
RA	2,426,616	T→C	6.1%	E93G (GAG→GGG)	PP_2127 ←	sensor histidine kinase
RA	2,426,621:1	+G	7.2%	coding (273/942 nt)	PP_2127 ←	sensor histidine kinase
RA	2,426,626	Δ1 bp	7.1%	coding (268/942 nt)	PP_2127 ←	sensor histidine kinase
RA	2,426,632	G→A	9.6%	P88S (CCG→TCG)	PP_2127 ←	sensor histidine kinase
RA	2,443,500	T→A	9.0%	F6I (TTT→ATT) ‡	PP_2140 →	hypothetical protein
RA	2,443,501	T→A	8.3%	F6Y (TTT→TAT) ‡	PP_2140 →	hypothetical protein
RA	2,443,502	T→A	8.3%	F6L (TTT→TTA) ‡	PP_2140 →	hypothetical protein
RA	2,443,848	G→A	100%	A122T (GCC→ACC)	PP_2140 →	hypothetical protein
RA	2,444,632	C→A	6.3%	Q86H (CAG→CAT)	sulA ←	cell division inhibitor SulA
RA	2,455,011	G→A	9.8%	S36S (AGC→AGT) ‡	mfd ←	transcription‑repair coupling factor
RA	2,455,012	C→G	9.8%	S36T (AGC→ACC) ‡	mfd ←	transcription‑repair coupling factor
RA	2,455,013	T→C	9.8%	S36G (AGC→GGC) ‡	mfd ←	transcription‑repair coupling factor
RA	2,458,065	G→C	8.1%	intergenic (+137/‑68)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,070	C→G	7.5%	intergenic (+142/‑63)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,071	C→G	7.8%	intergenic (+143/‑62)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,076	G→C	7.3%	intergenic (+148/‑57)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,093	G→A	7.0%	intergenic (+165/‑40)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,097	G→C	6.9%	intergenic (+169/‑36)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,100	C→G	6.8%	intergenic (+172/‑33)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,103	G→C	7.5%	intergenic (+175/‑30)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,107	T→C	6.0%	intergenic (+179/‑26)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,469,842	T→C	14.7%	intergenic (+11/+24)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,844	G→A	15.0%	intergenic (+13/+22)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,851	A→T	17.0%	intergenic (+20/+15)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,852	A→T	16.1%	intergenic (+21/+14)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,853	A→T	15.6%	intergenic (+22/+13)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,860	T→C	14.7%	intergenic (+29/+6)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,862	G→A	14.0%	intergenic (+31/+4)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,474,143	T→C	20.0%	intergenic (‑48/+132)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,148	T→C	18.7%	intergenic (‑53/+127)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,149	C→T	18.7%	intergenic (‑54/+126)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,154	A→G	25.8%	intergenic (‑59/+121)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,155	G→A	20.3%	intergenic (‑60/+120)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,160	G→A	14.8%	intergenic (‑65/+115)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,489,609	C→G	9.7%	G202G (GGC→GGG)	PP_2184 →	formate dehydrogenase subunit beta
RA	2,489,613	C→G	9.5%	P204A (CCC→GCC)	PP_2184 →	formate dehydrogenase subunit beta
RA	2,502,985	A→T	7.7%	S94C (AGC→TGC)	speB →	agmatinase
RA	2,502,991	A→G	7.2%	T96A (ACG→GCG) ‡	speB →	agmatinase
RA	2,502,992	C→T	7.4%	T96M (ACG→ATG) ‡	speB →	agmatinase
RA	2,502,998	A→T	8.7%	Q98L (CAG→CTG)	speB →	agmatinase
RA	2,505,438	T→C	7.3%	L13P (CTG→CCG)	PP_2199 →	hypothetical protein
RA	2,505,443	A→G	6.3%	T15A (ACT→GCT)	PP_2199 →	hypothetical protein
RA	2,508,789	A→T	9.4%	M109K (ATG→AAG)	PP_2203 ←	hypothetical protein
RA	2,512,979	G→A	5.5%	I37I (ATC→ATT)	yegQ ←	peptidase
RA	2,526,411	A→C	5.9%	K219Q (AAG→CAG) ‡	PP_2215 →	acetyl‑CoA acetyltransferase
RA	2,526,413	G→T	5.7%	K219N (AAG→AAT) ‡	PP_2215 →	acetyl‑CoA acetyltransferase
RA	2,571,106	G→A	12.1%	intergenic (‑24/+20)	PP_2254 ← / ← dctA‑III	GntR family transcriptional regulator/C4‑dicarboxylate transport protein
RA	2,571,108	C→G	11.8%	intergenic (‑26/+18)	PP_2254 ← / ← dctA‑III	GntR family transcriptional regulator/C4‑dicarboxylate transport protein
RA	2,571,110	T→C	12.7%	intergenic (‑28/+16)	PP_2254 ← / ← dctA‑III	GntR family transcriptional regulator/C4‑dicarboxylate transport protein
RA	2,607,464	G→A	8.1%	R658R (CGG→CGA)	PP_2284 →	tail tubular protein B
RA	2,621,328	T→A	6.3%	L48H (CTT→CAT)	PP_2294 →	hypothetical protein
RA	2,621,330	G→C	6.4%	D49H (GAT→CAT) ‡	PP_2294 →	hypothetical protein
RA	2,621,332	T→A	6.2%	D49E (GAT→GAA) ‡	PP_2294 →	hypothetical protein
RA	2,628,386	A→C	5.3%	A16A (GCA→GCC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,651,276	G→C	9.2%	intergenic (+41/+29)	PP_2323 → / ← aroF‑I	hypothetical protein/tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
RA	2,666,745	A→T	7.7%	intergenic (+19/‑47)	acnA‑II → / → prpF	aconitate hydratase/aconitate isomerase
RA	2,666,746	A→T	7.7%	intergenic (+20/‑46)	acnA‑II → / → prpF	aconitate hydratase/aconitate isomerase
RA	2,666,747	A→T	7.7%	intergenic (+21/‑45)	acnA‑II → / → prpF	aconitate hydratase/aconitate isomerase
RA	2,673,830	G→T	7.3%	intergenic (‑20/+2)	PP_5519 ← / ← PP_2342	hypothetical protein/hypothetical protein
RA	2,673,834	A→C	7.4%	*65G (TGA→GGA)	PP_2342 ←	hypothetical protein
RA	2,696,267	G→A	6.3%	L56L (TTG→TTA)	PP_2363 →	hypothetical protein
RA	2,703,098	C→T	8.3%	L85L (CTC→CTT)	PP_2369 →	leucine‑rich repeat‑containing protein
RA	2,708,542	A→G	7.7%	W223R (TGG→CGG)	cysI ←	sulfite reductase hemoprotein subunit beta
RA	2,708,543	C→T	7.7%	P222P (CCG→CCA)	cysI ←	sulfite reductase hemoprotein subunit beta
RA	2,734,540	G→A	5.5%	G480S (GGT→AGT)	PP_2394 →	leucine‑rich repeat‑containing protein
RA	2,736,355	G→C	7.4%	G1085R (GGC→CGC)	PP_2394 →	leucine‑rich repeat‑containing protein
RA	2,749,282	C→T	8.8%	H98Y (CAC→TAC) ‡	PP_2405 →	hypothetical protein
RA	2,749,283	A→G	8.9%	H98R (CAC→CGC) ‡	PP_2405 →	hypothetical protein
RA	2,749,956	C→G	6.1%	E178D (GAG→GAC) ‡	PP_2406 ←	quinate/shikimate dehydrogenase
RA	2,749,958	C→G	6.1%	E178Q (GAG→CAG) ‡	PP_2406 ←	quinate/shikimate dehydrogenase
RA	2,753,883	A→C	7.1%	E70A (GAG→GCG)	czcA‑II →	cation efflux system protein
RA	2,753,885	A→G	7.1%	T71A (ACC→GCC) ‡	czcA‑II →	cation efflux system protein
RA	2,753,886	C→T	7.0%	T71I (ACC→ATC) ‡	czcA‑II →	cation efflux system protein
RA	2,753,888	G→T	6.9%	A72S (GCG→TCG)	czcA‑II →	cation efflux system protein
RA	2,764,372	T→G	5.1%	A210A (GCA→GCC)	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,772,803	G→T	5.5%	R5S (CGT→AGT)	PP_2425 ←	AraC family transcriptional regulator
RA	2,773,941:1	+G	13.2%	coding (945/1053 nt)	calA →	coniferyl alcohol dehydrogenase
RA	2,776,111	C→G	7.2%	A153G (GCG→GGG)	sotB →	sugar efflux transporter
RA	2,793,113	T→A	6.9%	L59M (TTG→ATG) ‡	PP_2445 →	membrane protein
RA	2,793,114	T→A	6.9%	L59* (TTG→TAG) ‡	PP_2445 →	membrane protein
RA	2,793,117	T→C	7.3%	V60A (GTC→GCC)	PP_2445 →	membrane protein
RA	2,793,707	C→G	9.1%	intergenic (+16/+111)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,708	T→A	9.1%	intergenic (+17/+110)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,709	C→G	9.5%	intergenic (+18/+109)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,796,836	G→T	10.0%	intergenic (+20/‑112)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,837	A→T	10.2%	intergenic (+21/‑111)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,838	A→T	10.2%	intergenic (+22/‑110)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,839	A→C	10.2%	intergenic (+23/‑109)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,797,339	A→G	7.7%	D131G (GAT→GGT)	PP_2449 →	hypothetical protein
RA	2,798,434	G→A	7.5%	Q102* (CAG→TAG)	endX ←	extracellular DNA endonuclease
RA	2,801,973	C→A	7.3%	R119R (CGC→CGA)	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,884,812	C→G	10.6%	P93A (CCG→GCG) ‡	PP_2540 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,884,813	C→G	12.4%	P93R (CCG→CGG) ‡	PP_2540 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,887,552	G→A	7.7%	L373L (CTG→TTG)	PP_2542 ←	GntR family transcriptional regulator
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,951,334	G→C	13.0%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,953,657	Δ1 bp	8.9%	coding (841/1383 nt)	PP_2586 ←	putative amino acid transporter
RA	2,953,664:1	+T	9.5%	coding (834/1383 nt)	PP_2586 ←	putative amino acid transporter
RA	2,958,790	T→C	16.7%	intergenic (+56/+86)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,799	G→C	17.2%	intergenic (+65/+77)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,800	T→C	15.7%	intergenic (+66/+76)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,803	G→C	15.5%	intergenic (+69/+73)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,806	G→A	16.6%	intergenic (+72/+70)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,807	G→C	16.4%	intergenic (+73/+69)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,816	G→A	13.3%	intergenic (+82/+60)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,998,848	T→C	7.7%	Q47R (CAG→CGG) ‡	PP_2622 ←	hypothetical protein
RA	2,998,849	G→C	9.1%	Q47E (CAG→GAG) ‡	PP_2622 ←	hypothetical protein
RA	2,998,850	G→A	8.0%	S46S (TCC→TCT)	PP_2622 ←	hypothetical protein
RA	2,998,856	C→G	7.7%	G44G (GGG→GGC)	PP_2622 ←	hypothetical protein
RA	3,006,468	T→G	18.9%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,006,473	G→T	18.5%	L1018L (CTG→CTT)	PP_2627 →	membrane protein
RA	3,006,474	A→C	18.0%	K1019Q (AAG→CAG)	PP_2627 →	membrane protein
RA	3,006,479	C→A	17.1%	D1020E (GAC→GAA)	PP_2627 →	membrane protein
RA	3,048,582	T→C	7.4%	intergenic (+37/‑259)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,048,585	T→C	7.4%	intergenic (+40/‑256)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,048,590	A→G	7.7%	intergenic (+45/‑251)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,048,604	G→T	10.0%	intergenic (+59/‑237)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,048,605	A→C	9.8%	intergenic (+60/‑236)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,070,476	A→T	9.0%	intergenic (+44/‑310)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,070,477	C→T	9.9%	intergenic (+45/‑309)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,070,479	G→A	9.9%	intergenic (+47/‑307)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,070,481	T→C	10.0%	intergenic (+49/‑305)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,070,487	C→T	9.9%	intergenic (+55/‑299)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,070,488	A→G	10.0%	intergenic (+56/‑298)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,070,494	G→A	9.9%	intergenic (+62/‑292)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,070,496	T→C	10.0%	intergenic (+64/‑290)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,070,498	A→G	10.6%	intergenic (+66/‑288)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,070,499	A→T	10.6%	intergenic (+67/‑287)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,088,966	T→C	7.2%	S63G (AGC→GGC)	PP_2697 ←	flavin reductase domain‑containing oxidoreductase
RA	3,148,641	C→G	5.2%	G193G (GGC→GGG)	msuE →	FMN reductase
RA	3,162,734	T→A	9.5%	S34R (AGT→AGA)	PP_2777 →	acyl carrier protein
RA	3,166,056	G→C	8.1%	G163A (GGC→GCC)	PP_2780 →	3‑oxoacyl‑ACP synthase
RA	3,175,088	G→A	9.3%	G130D (GGT→GAT)	PP_2787 →	transporter
RA	3,176,690	G→A	10.5%	W664* (TGG→TAG)	PP_2787 →	transporter
RA	3,192,545	T→C	7.1%	S306G (AGC→GGC)	prr ←	gamma‑aminobutyraldehyde dehydrogenase
RA	3,199,099	G→A	7.8%	T139I (ACC→ATC)	PP_2806 ←	TetR family transcriptional regulator
RA	3,209,677	T→A	7.5%	F301I (TTC→ATC)	PP_2813 →	BNR domain‑containing protein
RA	3,220,452	T→A	6.7%	D187V (GAC→GTC)	PP_5539 ←	hypothetical protein
RA	3,250,655	C→G	8.9%	L14V (CTG→GTG)	ureJ →	urease accessory protein UreJ
RA	3,275,870	C→G	9.8%	intergenic (+25/‑117)	PP_5540 → / → PP_2874	hypothetical protein/hypothetical protein
RA	3,275,871	A→T	11.2%	intergenic (+26/‑116)	PP_5540 → / → PP_2874	hypothetical protein/hypothetical protein
RA	3,275,872	A→T	12.9%	intergenic (+27/‑115)	PP_5540 → / → PP_2874	hypothetical protein/hypothetical protein
RA	3,275,873	C→G	10.0%	intergenic (+28/‑114)	PP_5540 → / → PP_2874	hypothetical protein/hypothetical protein
RA	3,276,756	G→A	8.0%	intergenic (‑61/+222)	PP_2875 ← / ← ampC	hypothetical protein/beta‑lactamase
RA	3,281,519	C→A	6.5%	P14Q (CCG→CAG)	PP_2882 →	2‑hydroxychromene‑2‑carboxylate isomerase
RA	3,281,526	C→G	6.9%	S16R (AGC→AGG)	PP_2882 →	2‑hydroxychromene‑2‑carboxylate isomerase
RA	3,289,884	T→C	9.1%	W306R (TGG→CGG)	PP_2892 →	hypothetical protein
RA	3,306,249	C→T	8.3%	V194M (GTG→ATG)	PP_2907 ←	two‑component system response regulator
RA	3,312,687	G→T	8.2%	intergenic (+28/‑134)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,312,690	A→C	7.8%	intergenic (+31/‑131)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,316,914	G→C	11.5%	intergenic (‑117/+56)	ribC ← / ← treSA	riboflavin synthase/trehalose synthase A
RA	3,325,698	C→T	11.7%	L151L (CTG→TTG) ‡	mqo‑III →	malate:quinone oxidoreductase
RA	3,325,700	G→C	11.5%	L151L (CTG→CTC) ‡	mqo‑III →	malate:quinone oxidoreductase
RA	3,325,702	A→G	12.0%	K152R (AAG→AGG)	mqo‑III →	malate:quinone oxidoreductase
RA	3,337,782	G→C	8.7%	G329A (GGG→GCG)	PP_2934 →	hypothetical protein
RA	3,337,784	T→A	8.6%	S330T (TCG→ACG) ‡	PP_2934 →	hypothetical protein
RA	3,337,786	G→C	7.7%	S330S (TCG→TCC) ‡	PP_2934 →	hypothetical protein
RA	3,339,218	A→G	11.1%	intergenic (‑220/+23)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,344,839	T→C	10.4%	D97G (GAC→GGC)	PP_2941 ←	hypothetical protein
RA	3,344,844	C→G	8.2%	R95R (CGG→CGC) ‡	PP_2941 ←	hypothetical protein
RA	3,344,845	C→G	8.8%	R95P (CGG→CCG) ‡	PP_2941 ←	hypothetical protein
RA	3,344,850	G→A	9.7%	G93G (GGC→GGT)	PP_2941 ←	hypothetical protein
RA	3,372,120	T→C	7.4%	intergenic (‑48/‑71)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,372,121	G→C	7.4%	intergenic (‑49/‑70)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,372,122	G→A	7.6%	intergenic (‑50/‑69)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,389,595	T→A	6.8%	Q28H (CAA→CAT)	PP_2991 ←	hypothetical protein
RA	3,389,792	C→T	6.8%	A234T (GCC→ACC)	PP_2992 ←	hypothetical protein
RA	3,399,257	G→A	8.9%	R79H (CGC→CAC)	PP_3004 →	hypothetical protein
RA	3,424,890	C→G	12.8%	intergenic (+478/‑34)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,424,892	T→C	12.8%	intergenic (+480/‑32)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,424,893	G→A	13.1%	intergenic (+481/‑31)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,424,895	C→G	15.8%	intergenic (+483/‑29)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,436,145	T→A	6.7%	I27N (ATT→AAT)	gpI →	tail formation protein
RA	3,436,147	A→G	6.6%	I28V (ATC→GTC)	gpI →	tail formation protein
RA	3,453,480	A→G	6.2%	intergenic (‑34/+79)	PP_3069 ← / ← ppiC‑I	outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C
RA	3,453,684	T→A	8.5%	I51F (ATT→TTT)	ppiC‑I ←	peptidyl‑prolyl cis‑trans isomerase C
RA	3,456,311	T→G	8.6%	E51A (GAG→GCG)	eco ←	ecotin
RA	3,457,059	T→G	8.2%	E77A (GAG→GCG)	hbdH ←	3‑hydroxybutyrate dehydrogenase
RA	3,457,062	C→A	8.5%	R76L (CGC→CTC)	hbdH ←	3‑hydroxybutyrate dehydrogenase
RA	3,457,226	G→A	6.7%	I21I (ATC→ATT) ‡	hbdH ←	3‑hydroxybutyrate dehydrogenase
RA	3,457,227	A→T	6.7%	I21N (ATC→AAC) ‡	hbdH ←	3‑hydroxybutyrate dehydrogenase
RA	3,457,228	T→C	6.9%	I21V (ATC→GTC) ‡	hbdH ←	3‑hydroxybutyrate dehydrogenase
RA	3,462,958	A→G	6.0%	F467S (TTC→TCC)	PP_3078 ←	ABC transporter substrate‑binding protein
RA	3,492,111	A→G	11.3%	L103P (CTG→CCG)	PP_3096 ←	hypothetical protein
RA	3,511,734	C→T	6.1%	C134C (TGC→TGT)	PP_3108 →	rhs family protein
RA	3,528,569	T→A	6.5%	L129Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,536,287	T→A	9.6%	intergenic (+1/‑76)	PP_3124 → / → PP_3125	short chain fatty acid transporter/Cro/CI family transcriptional regulator
RA	3,552,394	Δ1 bp	7.5%	coding (51/978 nt)	PP_3137 →	group 2 family glycosyl transferase
RA	3,552,399:1	+G	9.0%	coding (56/978 nt)	PP_3137 →	group 2 family glycosyl transferase
RA	3,566,171	T→C	8.7%	D65G (GAT→GGT)	PP_3148 ←	glutamine synthetase
RA	3,566,174	T→G	8.8%	D64A (GAC→GCC)	PP_3148 ←	glutamine synthetase
RA	3,566,179	G→T	8.3%	Y62* (TAC→TAA) ‡	PP_3148 ←	glutamine synthetase
RA	3,566,180	T→A	8.2%	Y62F (TAC→TTC) ‡	PP_3148 ←	glutamine synthetase
RA	3,566,181	A→C	8.2%	Y62D (TAC→GAC) ‡	PP_3148 ←	glutamine synthetase
RA	3,566,186	C→A	8.3%	G60V (GGC→GTC)	PP_3148 ←	glutamine synthetase
RA	3,566,189	G→A	8.4%	T59I (ACC→ATC)	PP_3148 ←	glutamine synthetase
RA	3,586,352	G→A	5.9%	A182A (GCG→GCA)	benK →	benzoate MFS transporter
RA	3,586,356	C→G	6.0%	P184A (CCA→GCA)	benK →	benzoate MFS transporter
RA	3,597,080	G→T	8.5%	intergenic (‑75/+21)	nemA ← / ← PP_3174	FMN‑linked N‑ethylmaleimide reductase/oxidoreductase
RA	3,597,082	C→A	8.5%	intergenic (‑77/+19)	nemA ← / ← PP_3174	FMN‑linked N‑ethylmaleimide reductase/oxidoreductase
RA	3,597,083	T→G	8.5%	intergenic (‑78/+18)	nemA ← / ← PP_3174	FMN‑linked N‑ethylmaleimide reductase/oxidoreductase
RA	3,597,085	A→C	10.5%	intergenic (‑80/+16)	nemA ← / ← PP_3174	FMN‑linked N‑ethylmaleimide reductase/oxidoreductase
RA	3,615,456	A→G	9.9%	intergenic (+19/‑210)	PP_3186 → / → codB	transcriptional regulator/cytosine transporter
RA	3,625,537	T→A	16.6%	intergenic (‑50/+27)	PP_3195 ← / ← PP_3196	hypothetical protein/nodulation protein d1
RA	3,625,544	Δ1 bp	18.5%	intergenic (‑57/+20)	PP_3195 ← / ← PP_3196	hypothetical protein/nodulation protein d1
RA	3,633,786	C→G	12.4%	P62A (CCG→GCG)	PP_3202 →	transporter
RA	3,633,791	C→G	12.5%	R63R (CGC→CGG)	PP_3202 →	transporter
RA	3,636,403	A→T	8.4%	I111F (ATC→TTC)	PP_3203 →	MFS transporter
RA	3,639,337	T→C	7.2%	V117A (GTG→GCG)	PP_3206 →	hypothetical protein
RA	3,639,342	G→A	7.2%	A119T (GCC→ACC)	PP_3206 →	hypothetical protein
RA	3,647,234	C→A	7.7%	intergenic (‑171/‑483)	PP_3213 ← / → PP_3214	ABC transporter substrate‑binding protein/hypothetical protein
RA	3,647,235	T→G	7.7%	intergenic (‑172/‑482)	PP_3213 ← / → PP_3214	ABC transporter substrate‑binding protein/hypothetical protein
RA	3,701,990	T→G	10.1%	Y140* (TAT→TAG)	PP_3267 →	Clp protease
RA	3,704,981	A→C	6.9%	S341A (TCC→GCC)	paaZ ←	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
RA	3,704,983	G→C	6.9%	A340G (GCC→GGC)	paaZ ←	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
RA	3,704,986	A→T	6.8%	L339Q (CTG→CAG)	paaZ ←	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
RA	3,704,989	G→C	7.7%	A338G (GCC→GGC)	paaZ ←	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
RA	3,704,991	G→T	7.4%	G337G (GGC→GGA)	paaZ ←	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
RA	3,713,570	A→T	5.8%	L315Q (CTG→CAG)	paaK ←	phenylacetate‑CoA ligase
RA	3,718,102	A→C	7.1%	L164R (CTG→CGG)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,104	C→G	7.0%	A163A (GCG→GCC)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,108	T→A	6.6%	K162M (AAG→ATG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,109	T→A	6.5%	K162* (AAG→TAG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,113	C→G	6.6%	R160R (CGG→CGC) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,115	G→T	6.4%	R160R (CGG→AGG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,726,082	C→G	6.5%	G245G (GGC→GGG)	PP_3291 →	metallo‑beta‑lactamase family protein
RA	3,726,087	C→G	6.7%	A247G (GCC→GGC)	PP_3291 →	metallo‑beta‑lactamase family protein
RA	3,726,093	T→G	6.5%	L249R (CTG→CGG)	PP_3291 →	metallo‑beta‑lactamase family protein
RA	3,735,139	Δ1 bp	7.8%	coding (36/3093 nt)	PP_3302 →	RND family transporter
RA	3,735,143:1	+T	8.2%	coding (40/3093 nt)	PP_3302 →	RND family transporter
RA	3,740,209	C→A	12.6%	L218M (CTG→ATG) ‡	PP_3304 →	Bcr/CflA family multidrug resistance transporter
RA	3,740,210	T→G	13.6%	L218R (CTG→CGG) ‡	PP_3304 →	Bcr/CflA family multidrug resistance transporter
RA	3,746,366	A→G	6.1%	Y551C (TAC→TGC)	paoC →	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA	3,746,369	T→C	6.5%	L552P (CTG→CCG)	paoC →	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA	3,746,372	A→G	6.5%	H553R (CAC→CGC) ‡	paoC →	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA	3,746,373	C→T	6.6%	H553H (CAC→CAT) ‡	paoC →	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA	3,746,376	G→A	7.0%	A554A (GCG→GCA)	paoC →	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA	3,746,379	C→T	6.7%	G555G (GGC→GGT)	paoC →	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA	3,750,735	G→T	7.5%	H89N (CAT→AAT)	PP_3315 ←	membrane protein
RA	3,753,595	G→T	12.1%	A96A (GCC→GCA)	PP_3316 ←	chaperone‑associated ATPase
RA	3,753,598	A→C	11.3%	V95V (GTT→GTG)	PP_3316 ←	chaperone‑associated ATPase
RA	3,757,030	G→T	7.1%	L29M (CTG→ATG)	PP_3320 ←	hypothetical protein
RA	3,757,034	T→A	8.2%	E27D (GAA→GAT)	PP_3320 ←	hypothetical protein
RA	3,757,038	C→G	7.7%	G26A (GGC→GCC)	PP_3320 ←	hypothetical protein
RA	3,757,042	T→A	7.6%	I25F (ATC→TTC)	PP_3320 ←	hypothetical protein
RA	3,757,046	A→C	7.8%	H23Q (CAT→CAG)	PP_3320 ←	hypothetical protein
RA	3,757,049	C→A	8.6%	Q22H (CAG→CAT)	PP_3320 ←	hypothetical protein
RA	3,762,926	T→C	5.9%	F57L (TTC→CTC)	PP_3326 →	hypothetical protein
RA	3,762,930:1	+C	6.0%	coding (173/723 nt)	PP_3326 →	hypothetical protein
RA	3,762,942	A→T	8.8%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,762,947	A→T	7.3%	I64F (ATC→TTC)	PP_3326 →	hypothetical protein
RA	3,775,326	G→C	6.2%	P51A (CCC→GCC)	PP_3336 ←	hypothetical protein
RA	3,778,570	A→G	6.0%	N542D (AAC→GAC)	PP_3340 →	TonB‑dependent receptor
RA	3,779,129	A→T	6.0%	S112T (TCT→ACT)	nikR ←	nickel‑responsive regulator
RA	3,779,130	C→T	6.3%	L111L (TTG→TTA) ‡	nikR ←	nickel‑responsive regulator
RA	3,779,131	A→G	6.3%	L111S (TTG→TCG) ‡	nikR ←	nickel‑responsive regulator
RA	3,783,110	G→A	5.8%	L67L (CTG→CTA)	nikD →	nickel ABC transporter ATP‑binding protein
RA	3,788,398	G→C	5.7%	Y79* (TAC→TAG)	PP_3350 ←	hypothetical protein
RA	3,788,401	G→C	5.7%	R78R (CGC→CGG)	PP_3350 ←	hypothetical protein
RA	3,788,425	C→T	100%	W70* (TGG→TGA)	PP_3350 ←	hypothetical protein
RA	3,791,105	C→T	6.4%	G183G (GGC→GGT)	PP_3353 →	sulfatase‑modifying protein
RA	3,804,021	C→G	9.6%	intergenic (‑105/‑39)	PP_3361 ← / → PP_3362	aminotransferase/AsnC family transcriptional regulator
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,846,798	T→C	9.5%	intergenic (‑102/‑113)	PP_3395 ← / → PP_3396	LysR family transcriptional regulator/hypothetical protein
RA	3,865,284	C→G	6.5%	E121Q (GAG→CAG)	PP_3414 ←	methyl‑accepting chemotaxis transducer/sensory box protein
RA	3,872,131	A→T	10.1%	L84M (TTG→ATG)	PP_3420 ←	sensor histidine kinase
RA	3,872,133	T→C	10.3%	Q83R (CAA→CGA)	PP_3420 ←	sensor histidine kinase
RA	3,872,136	G→A	10.4%	S82L (TCG→TTG)	PP_3420 ←	sensor histidine kinase
RA	3,872,138	A→T	10.4%	H81Q (CAT→CAA)	PP_3420 ←	sensor histidine kinase
RA	3,888,321	T→C	7.0%	F109S (TTC→TCC)	PP_3431 →	ThiJ/PfpI family protein
RA	3,892,539	T→G	7.9%	L508R (CTG→CGG)	PP_3435 →	hypothetical protein
RA	3,892,543	C→G	8.0%	A509A (GCC→GCG)	PP_3435 →	hypothetical protein
RA	3,892,545	C→G	8.0%	T510S (ACT→AGT)	PP_3435 →	hypothetical protein
RA	3,892,547	C→G	7.9%	R511G (CGC→GGC)	PP_3435 →	hypothetical protein
RA	3,914,839	A→G	6.9%	intergenic (‑53/‑193)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,914,848	G→C	7.3%	intergenic (‑62/‑184)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,914,851	G→A	7.2%	intergenic (‑65/‑181)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,914,853	A→G	6.9%	intergenic (‑67/‑179)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,914,856	T→G	7.1%	intergenic (‑70/‑176)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,914,857	C→A	7.5%	intergenic (‑71/‑175)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,914,860	C→T	7.4%	intergenic (‑74/‑172)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,914,862	T→C	7.2%	intergenic (‑76/‑170)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,914,865	G→C	8.2%	intergenic (‑79/‑167)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,914,874	C→T	7.8%	intergenic (‑88/‑158)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,914,885	A→C	7.7%	intergenic (‑99/‑147)	PP_3454 ← / → PP_3455	transcriptional regulator/multidrug RND transporter membrane fusion protein
RA	3,917,204	C→T	7.2%	S329L (TCG→TTG)	mexB →	multidrug resistance protein MexB
RA	3,917,206	C→A	7.5%	P330T (CCG→ACG)	mexB →	multidrug resistance protein MexB
RA	3,917,209	T→A	7.6%	F331I (TTC→ATC) ‡	mexB →	multidrug resistance protein MexB
RA	3,917,210	T→A	7.6%	F331Y (TTC→TAC) ‡	mexB →	multidrug resistance protein MexB
RA	3,917,213	T→G	7.7%	V332G (GTC→GGC)	mexB →	multidrug resistance protein MexB
RA	3,917,215	A→G	7.7%	K333E (AAG→GAG)	mexB →	multidrug resistance protein MexB
RA	3,941,124	C→T	8.0%	V26I (GTC→ATC)	PP_3475 ←	type II secretion system pseudopilin PulG‑like signal peptide protein
RA	3,941,125	C→T	8.0%	A25A (GCG→GCA)	PP_3475 ←	type II secretion system pseudopilin PulG‑like signal peptide protein
RA	3,941,128	A→G	7.8%	I24I (ATT→ATC) ‡	PP_3475 ←	type II secretion system pseudopilin PulG‑like signal peptide protein
RA	3,941,129	A→G	7.7%	I24T (ATT→ACT) ‡	PP_3475 ←	type II secretion system pseudopilin PulG‑like signal peptide protein
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,980,282	C→G	8.4%	D117H (GAC→CAC)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,982,954	G→T	5.8%	intergenic (+113/‑33)	PP_3510 → / → ilvE	hypothetical protein/branched‑chain‑amino acid aminotransferase
RA	3,982,957	A→C	6.8%	intergenic (+116/‑30)	PP_3510 → / → ilvE	hypothetical protein/branched‑chain‑amino acid aminotransferase
RA	3,984,040	G→T	10.3%	intergenic (+34/+156)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,984,041	C→T	10.1%	intergenic (+35/+155)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,984,042	A→G	10.2%	intergenic (+36/+154)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,984,043	A→C	10.2%	intergenic (+37/+153)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,990,293	T→A	8.3%	L193Q (CTG→CAG) ‡	PP_3516 →	AraC family transcriptional regulator
RA	3,990,294	G→A	8.3%	L193L (CTG→CTA) ‡	PP_3516 →	AraC family transcriptional regulator
RA	3,990,296	C→G	8.9%	A194G (GCC→GGC)	PP_3516 →	AraC family transcriptional regulator
RA	3,990,298	T→C	7.8%	L195L (TTG→CTG) ‡	PP_3516 →	AraC family transcriptional regulator
RA	3,990,299	T→A	7.7%	L195* (TTG→TAG) ‡	PP_3516 →	AraC family transcriptional regulator
RA	4,018,065	A→T	7.3%	Q167L (CAG→CTG)	PP_3545 →	two‑component system sensor histidine kinase/response regulator
RA	4,033,040	C→T	5.9%	G226G (GGC→GGT)	PP_3555 →	transmembrane sensor
RA	4,035,604	A→G	6.5%	M219V (ATG→GTG) ‡	PP_3557 →	methyl‑accepting chemotaxis transducer
RA	4,035,606	G→C	6.4%	M219I (ATG→ATC) ‡	PP_3557 →	methyl‑accepting chemotaxis transducer
RA	4,035,608	C→T	6.7%	T220I (ACC→ATC)	PP_3557 →	methyl‑accepting chemotaxis transducer
RA	4,048,854	T→C	5.6%	F469L (TTC→CTC)	quiA →	quinate dehydrogenase
RA	4,061,704	C→T	9.3%	A211A (GCC→GCT)	PP_3579 →	membrane protein
RA	4,080,919	A→T	8.5%	intergenic (‑143/+20)	amaC ← / ← dpkA	D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase
RA	4,080,920	A→T	8.5%	intergenic (‑144/+19)	amaC ← / ← dpkA	D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase
RA	4,096,649	T→G	5.5%	S86A (TCG→GCG) ‡	PP_5608 →	hypothetical protein
RA	4,096,650	C→A	5.6%	S86* (TCG→TAG) ‡	PP_5608 →	hypothetical protein
RA	4,100,828	A→G	7.1%	P234P (CCA→CCG)	PP_3608 →	LysR family transcriptional regulator
RA	4,100,833	G→C	7.0%	W236S (TGG→TCG)	PP_3608 →	LysR family transcriptional regulator
RA	4,100,839	C→T	7.0%	A238V (GCG→GTG)	PP_3608 →	LysR family transcriptional regulator
RA	4,101,394	A→G	8.1%	I65T (ATT→ACT)	PP_3609 ←	membrane protein
RA	4,125,671	A→G	10.0%	F54S (TTC→TCC)	PP_3629 ←	hypothetical protein
RA	4,125,673	T→A	9.4%	E53D (GAA→GAT) ‡	PP_3629 ←	hypothetical protein
RA	4,125,675	C→T	9.4%	E53K (GAA→AAA) ‡	PP_3629 ←	hypothetical protein
RA	4,155,102	G→A	7.3%	T131M (ACG→ATG)	PP_3658 ←	aromatic compound MFS transporter
RA	4,156,141	A→T	11.0%	L217* (TTA→TAA)	PP_3659 ←	transcriptional regulator, AraC family
RA	4,162,099	T→C	8.3%	intergenic (‑43/+34)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,164,660	G→T	100%	intergenic (+10/+107)	PP_3665 → / ← PP_3666	AraC family transcriptional regulator/MHS family metabolite MFS transporter
RA	4,191,400	G→C	10.3%	intergenic (‑732/‑425)	PP_5612 ← / → PP_5613	hypothetical protein/hypothetical protein
RA	4,196,293	G→C	7.8%	intergenic (+135/+234)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,196,294	T→C	6.5%	intergenic (+136/+233)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,200,096	G→T	6.5%	S314S (TCC→TCA)	PP_3690 ←	hypothetical protein
RA	4,234,944	G→C	6.0%	R41G (CGC→GGC)	PP_3711 ←	diguanylate cyclase
RA	4,234,948	G→C	6.0%	A39A (GCC→GCG)	PP_3711 ←	diguanylate cyclase
RA	4,265,951	C→G	5.6%	D170H (GAC→CAC)	PP_3738 ←	transcriptional regulator VanR
RA	4,265,952	C→G	5.6%	V169V (GTG→GTC)	PP_3738 ←	transcriptional regulator VanR
RA	4,268,241	G→A	8.9%	L354L (CTG→TTG)	PP_3740 ←	MFS transporter
RA	4,273,231	A→T	8.0%	Y216N (TAC→AAC)	glcC ←	transcriptional regulator GlcC
RA	4,273,232	C→G	8.0%	L215F (TTG→TTC) ‡	glcC ←	transcriptional regulator GlcC
RA	4,273,233	A→T	8.0%	L215* (TTG→TAG) ‡	glcC ←	transcriptional regulator GlcC
RA	4,279,813	T→G	6.9%	L338R (CTG→CGG)	PP_3750 →	GntR family transcriptional regulator
RA	4,311,314	T→A	10.9%	F12I (TTT→ATT) ‡	PP_3784 →	hypothetical protein
RA	4,311,315	T→A	10.9%	F12Y (TTT→TAT) ‡	PP_3784 →	hypothetical protein
RA	4,337,461	C→G	6.1%	A34G (GCC→GGC)	PP_3812 →	lipase
RA	4,337,466	C→G	7.5%	L36V (CTC→GTC) ‡	PP_3812 →	lipase
RA	4,337,467	T→A	6.2%	L36H (CTC→CAC) ‡	PP_3812 →	lipase
RA	4,337,473	C→G	6.4%	A38G (GCC→GGC)	PP_3812 →	lipase
RA	4,338,393	T→A	7.4%	intergenic (+13/+129)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,338,403	T→C	10.4%	intergenic (+23/+119)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,338,404	G→A	10.7%	intergenic (+24/+118)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,344,302	A→T	13.1%	intergenic (+33/‑123)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,304	C→T	13.0%	intergenic (+35/‑121)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,305	A→G	13.4%	intergenic (+36/‑120)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,310	C→G	13.3%	intergenic (+41/‑115)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,313	C→G	13.3%	intergenic (+44/‑112)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,318	C→T	18.0%	intergenic (+49/‑107)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,319	A→G	18.3%	intergenic (+50/‑106)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,321	A→T	17.8%	intergenic (+52/‑104)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,346,097	G→A	5.5%	P332L (CCG→CTG)	gor ←	glutathione reductase
RA	4,348,705	A→G	59.1%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,355,046	Δ1 bp	8.7%	coding (246/681 nt)	modB →	molybdate ABC transporter permease ModB
RA	4,355,050:1	+C	8.8%	coding (250/681 nt)	modB →	molybdate ABC transporter permease ModB
RA	4,375,590	A→C	9.9%	intergenic (‑55/+55)	PP_5637 ← / ← PP_3851	hypothetical protein/hypothetical protein
RA	4,375,591	A→T	9.3%	intergenic (‑56/+54)	PP_5637 ← / ← PP_3851	hypothetical protein/hypothetical protein
RA	4,375,592	A→T	9.3%	intergenic (‑57/+53)	PP_5637 ← / ← PP_3851	hypothetical protein/hypothetical protein
RA	4,375,593	G→T	10.0%	intergenic (‑58/+52)	PP_5637 ← / ← PP_3851	hypothetical protein/hypothetical protein
RA	4,379,142	G→A	8.0%	A114A (GCG→GCA)  A66V (GCG→GTG) ‡	PP_5639 → PP_3855 ←	hypothetical protein hypothetical protein
RA	4,379,143	C→G	8.1%	Q115E (CAG→GAG)  A66P (GCG→CCG) ‡	PP_5639 → PP_3855 ←	hypothetical protein hypothetical protein
RA	4,379,146	G→C	7.6%	A116P (GCT→CCT)  P65A (CCT→GCT)	PP_5639 → PP_3855 ←	hypothetical protein hypothetical protein
RA	4,379,149	C→G	7.9%	L117V (CTG→GTG) ‡ E64Q (GAG→CAG)	PP_5639 → PP_3855 ←	hypothetical protein hypothetical protein
RA	4,379,150	T→C	7.8%	L117P (CTG→CCG) ‡ A63A (GCA→GCG)	PP_5639 → PP_3855 ←	hypothetical protein hypothetical protein
RA	4,382,821	G→A	9.4%	intergenic (‑32/+230)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,382,822	T→C	9.2%	intergenic (‑33/+229)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,388,943	C→T	7.7%	A600T (GCG→ACG)	PP_3865 ←	tail protein
RA	4,388,948	T→C	7.7%	Q598R (CAA→CGA)	PP_3865 ←	tail protein
RA	4,388,950	A→G	7.7%	R597R (CGT→CGC)	PP_3865 ←	tail protein
RA	4,393,681	C→A	8.7%	E431* (GAG→TAG)	PP_3869 ←	sheath protein
RA	4,398,901	C→G	6.6%	intergenic (‑45/+17)	PP_3877 ← / ← PP_3878	hypothetical protein/minor capsid protein C
RA	4,402,030	A→C	14.0%	L375R (CTG→CGG) ‡	PP_3881 ←	terminase large subunit
RA	4,402,031	G→T	12.3%	L375M (CTG→ATG) ‡	PP_3881 ←	terminase large subunit
RA	4,425,139	G→C	7.9%	intergenic (‑197/‑603)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,425,141	G→C	8.0%	intergenic (‑199/‑601)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,425,143	G→C	8.5%	intergenic (‑201/‑599)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,429,294	A→G	10.0%	N111S (AAT→AGT) ‡	PP_3923 →	phosphoglycerate mutase
RA	4,429,295	T→C	10.0%	N111N (AAT→AAC) ‡	PP_3923 →	phosphoglycerate mutase
RA	4,429,296	G→A	10.1%	A112T (GCT→ACT) ‡	PP_3923 →	phosphoglycerate mutase
RA	4,429,297	C→T	9.9%	A112V (GCT→GTT) ‡	PP_3923 →	phosphoglycerate mutase
RA	4,446,491	G→C	8.1%	Y358* (TAC→TAG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,446,494	G→C	8.1%	L357L (CTC→CTG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,449,744	G→C	6.3%	intergenic (+259/‑183)	nicR → / → nicA	HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
RA	4,449,747	G→C	6.1%	intergenic (+262/‑180)	nicR → / → nicA	HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
RA	4,458,747	A→T	6.9%	intergenic (+39/‑229)	pcaJ → / → trkH‑I	3‑oxoadipate CoA‑transferase subunit A/potassium transporter
RA	4,458,750	C→T	6.9%	intergenic (+42/‑226)	pcaJ → / → trkH‑I	3‑oxoadipate CoA‑transferase subunit A/potassium transporter
RA	4,458,751	A→G	6.9%	intergenic (+43/‑225)	pcaJ → / → trkH‑I	3‑oxoadipate CoA‑transferase subunit A/potassium transporter
RA	4,458,754	A→T	6.5%	intergenic (+46/‑222)	pcaJ → / → trkH‑I	3‑oxoadipate CoA‑transferase subunit A/potassium transporter
RA	4,503,212	G→T	5.9%	G281C (GGT→TGT)	xanP →	xanthine permease
RA	4,504,921	G→C	6.2%	Q9H (CAG→CAC)	tusE →	sulfur transfer protein
RA	4,504,922	G→C	6.1%	V10L (GTG→CTG)	tusE →	sulfur transfer protein
RA	4,509,002	A→T	6.9%	S354T (TCG→ACG)	serS ←	serine‑‑tRNA ligase
RA	4,525,550	C→G	7.7%	H161D (CAC→GAC) ‡	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,525,551	A→C	7.3%	H161P (CAC→CCC) ‡	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,525,557	T→A	10.6%	V163D (GTC→GAC)	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,525,563	G→T	9.2%	G165V (GGC→GTC) ‡	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,525,564	C→G	9.1%	G165G (GGC→GGG) ‡	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,530,025	T→A	10.3%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,530,026	T→A	12.8%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,547,143	A→T	7.5%	L68H (CTC→CAC)	pydP ←	NCS1 family transporter PydP
RA	4,547,146	A→T	7.7%	V67E (GTG→GAG)	pydP ←	NCS1 family transporter PydP
RA	4,547,148	G→A	8.2%	G66G (GGC→GGT)	pydP ←	NCS1 family transporter PydP
RA	4,551,777	C→T	9.5%	C382C (TGC→TGT)	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,574,227	G→C	6.8%	R300P (CGC→CCC) ‡	glgX →	glycogen debranching enzyme
RA	4,574,228	C→G	6.7%	R300R (CGC→CGG) ‡	glgX →	glycogen debranching enzyme
RA	4,574,229	G→C	8.0%	G301R (GGC→CGC)	glgX →	glycogen debranching enzyme
RA	4,575,038	A→G	7.2%	Q570Q (CAA→CAG)	glgX →	glycogen debranching enzyme
RA	4,575,039	G→C	7.0%	E571Q (GAG→CAG)	glgX →	glycogen debranching enzyme
RA	4,575,044	G→C	6.8%	L572L (CTG→CTC)	glgX →	glycogen debranching enzyme
RA	4,575,045	C→T	7.2%	L573L (CTG→TTG)	glgX →	glycogen debranching enzyme
RA	4,584,069	C→T	8.3%	L505L (TTG→TTA)	glgE ←	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	100%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,587,695	G→T	5.5%	R40R (CGC→CGA) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,697	G→C	5.5%	R40G (CGC→GGC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,700	A→C	5.6%	S39A (TCC→GCC)	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,595,178	C→A	6.8%	intergenic (+94/‑25)	PP_4069 → / → PP_mr45	hypothetical protein/PrrF ncRNA
RA	4,595,179	T→A	6.9%	intergenic (+95/‑24)	PP_4069 → / → PP_mr45	hypothetical protein/PrrF ncRNA
RA	4,595,180	T→G	7.9%	intergenic (+96/‑23)	PP_4069 → / → PP_mr45	hypothetical protein/PrrF ncRNA
RA	4,632,595	G→C	7.8%	noncoding (35/76 nt)	PP_t59 ←	tRNA‑Gly
RA	4,655,518	T→C	7.2%	L138P (CTC→CCC) ‡	PP_4118 →	membrane protein
RA	4,655,519	C→G	7.4%	L138L (CTC→CTG) ‡	PP_4118 →	membrane protein
RA	4,655,520	G→A	7.4%	G139S (GGC→AGC)	PP_4118 →	membrane protein
RA	4,669,731	G→C	8.3%	T21T (ACG→ACC)	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,669,732	G→A	8.3%	V22M (GTG→ATG) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,669,733	T→C	8.3%	V22A (GTG→GCG) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,669,734	G→C	8.3%	V22V (GTG→GTC) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,700,758	T→C	8.2%	intergenic (‑71/+79)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,769	A→G	7.7%	intergenic (‑82/+68)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,772	T→G	8.2%	intergenic (‑85/+65)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,773	C→T	8.2%	intergenic (‑86/+64)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,774	A→G	8.3%	intergenic (‑87/+63)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,779	C→T	8.9%	intergenic (‑92/+58)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,780	A→G	8.9%	intergenic (‑93/+57)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,785	C→T	8.9%	intergenic (‑98/+52)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,786	A→G	9.0%	intergenic (‑99/+51)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,787	C→A	8.9%	intergenic (‑100/+50)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,790	C→T	7.8%	intergenic (‑103/+47)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,730,126	T→C	8.7%	S440G (AGT→GGT)	lpdG ←	dihydrolipoyl dehydrogenase
RA	4,730,127	G→A	8.6%	T439T (ACC→ACT)	lpdG ←	dihydrolipoyl dehydrogenase
RA	4,734,025	A→C	6.9%	L537R (CTG→CGG)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,734,028	T→G	7.0%	E536A (GAG→GCG) ‡	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,734,029	C→A	7.1%	E536* (GAG→TAG) ‡	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,734,032	G→T	7.2%	R535S (CGC→AGC)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,739,103	T→C	7.7%	S7G (AGC→GGC)	sdhC ←	succinate dehydrogenase membrane b‑556 subunit
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,839	C→G	21.6%	intergenic (+76/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,841	T→A	23.7%	intergenic (+78/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,842	T→A	21.2%	intergenic (+79/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,844	C→G	22.5%	intergenic (+81/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,719	A→G	5.0%	I98T (ATC→ACC)	etfA ←	electron transfer flavoprotein subunit alpha
RA	4,746,788	G→C	5.8%	P75R (CCG→CGG)	etfA ←	electron transfer flavoprotein subunit alpha
RA	4,768,303	A→T	8.8%	L170Q (CTG→CAG)	PP_4218 ←	lipase/esterase family protein
RA	4,780,121	A→G	8.6%	V2398A (GTG→GCG) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,780,122	C→T	8.6%	V2398M (GTG→ATG) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,791,726	C→T	9.3%	G705D (GGC→GAC)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,792,979	G→C	6.7%	A287A (GCC→GCG)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,792,990	G→C	6.9%	R284G (CGC→GGC)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,833,194	C→G	6.2%	intergenic (‑4/+60)	pvdY ← / ← PP_4246	hydroxyproline acetylase/substrate‑binding protein
RA	4,866,023	G→T	8.9%	R171R (CGC→CGA)	PP_4277 ←	GntR family transcriptional regulator
RA	4,872,311	A→G	7.1%	Y229C (TAC→TGC)	guaD →	guanine deaminase
RA	4,872,316	C→T	8.0%	H231Y (CAC→TAC)	guaD →	guanine deaminase
RA	4,884,962	T→G	7.1%	E139A (GAA→GCA) ‡	yedI ←	inner membrane protein
RA	4,884,963	C→A	8.3%	E139* (GAA→TAA) ‡	yedI ←	inner membrane protein
RA	4,890,693	T→C	5.7%	intergenic (+93/‑146)	glxR → / → ttuD	2‑hydroxy‑3‑oxopropionate reductase/hydroxypyruvate reductase
RA	4,894,782	G→C	7.4%	P206P (CCC→CCG) ‡	PP_4303 ←	hypothetical protein
RA	4,894,783	G→C	7.4%	P206R (CCC→CGC) ‡	PP_4303 ←	hypothetical protein
RA	4,894,784	G→C	7.4%	P206A (CCC→GCC) ‡	PP_4303 ←	hypothetical protein
RA	4,900,065	A→G	5.9%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,069	G→A	5.8%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,070	T→C	5.7%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,074	C→T	5.9%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,904,996	A→C	6.5%	intergenic (‑163/+72)	PP_4312 ← / ← PP_4313	hypothetical protein/peptidylprolyl isomerase
RA	4,904,998	G→T	6.2%	intergenic (‑165/+70)	PP_4312 ← / ← PP_4313	hypothetical protein/peptidylprolyl isomerase
RA	4,905,496:1	+C	7.0%	intergenic (‑90/+38)	PP_4313 ← / ← PP_4314	peptidylprolyl isomerase/hypothetical protein
RA	4,905,499	C→T	7.2%	intergenic (‑93/+35)	PP_4313 ← / ← PP_4314	peptidylprolyl isomerase/hypothetical protein
RA	4,905,502	A→G	7.3%	intergenic (‑96/+32)	PP_4313 ← / ← PP_4314	peptidylprolyl isomerase/hypothetical protein
RA	4,905,504	Δ1 bp	7.4%	intergenic (‑98/+30)	PP_4313 ← / ← PP_4314	peptidylprolyl isomerase/hypothetical protein
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,988,362	G→C	7.0%	intergenic (+32/+62)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,988,363	C→A	7.0%	intergenic (+33/+61)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,988,364	T→G	7.0%	intergenic (+34/+60)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,988,365	G→C	7.0%	intergenic (+35/+59)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	5,015,782	A→G	10.7%	intergenic (‑45/+189)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,787	T→A	10.9%	intergenic (‑50/+184)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,788	C→G	10.9%	intergenic (‑51/+183)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,789	T→A	11.0%	intergenic (‑52/+182)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,794	C→T	11.4%	intergenic (‑57/+177)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,041,249	T→A	6.1%	intergenic (+227/‑435)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,252	T→A	5.2%	intergenic (+230/‑432)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,077,234	G→T	9.5%	intergenic (+29/+79)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,077,237	A→C	9.1%	intergenic (+32/+76)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,078,877	G→C	5.9%	intergenic (‑122/+275)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,103,088	A→T	7.7%	intergenic (+20/‑170)	phhB → / → PP_5694	pterin‑4‑alpha‑carbinolamine dehydratase/hypothetical protein
RA	5,103,089	G→C	7.8%	intergenic (+21/‑169)	phhB → / → PP_5694	pterin‑4‑alpha‑carbinolamine dehydratase/hypothetical protein
RA	5,103,090	A→T	7.8%	intergenic (+22/‑168)	phhB → / → PP_5694	pterin‑4‑alpha‑carbinolamine dehydratase/hypothetical protein
RA	5,104,900	G→A	7.5%	A376T (GCA→ACA)	yhhS →	carbohydrate efflux transporter
RA	5,130,433	A→C	8.1%	L324R (CTG→CGG)	recQ ←	ATP‑dependent DNA 3'‑5' helicase
RA	5,135,883	G→C	11.3%	D229E (GAC→GAG)	PP_4521 ←	aerotaxis receptor
RA	5,135,888	G→C	10.9%	L228V (CTC→GTC)	PP_4521 ←	aerotaxis receptor
RA	5,137,665	A→G	7.5%	intergenic (‑64/‑149)	PP_4522 ← / → PP_4523	LysR family transcriptional regulator/agmatinase
RA	5,137,670	C→T	7.5%	intergenic (‑69/‑144)	PP_4522 ← / → PP_4523	LysR family transcriptional regulator/agmatinase
RA	5,147,421	G→A	100%	G176S (GGT→AGT)	mscMB →	miniconductance mechanosensitive channel protein
RA	5,156,328	A→G	6.4%	S263G (AGC→GGC)	PP_4539 →	LysR family transcriptional regulator
RA	5,173,244	T→C	9.5%	intergenic (‑285/+47)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,247	G→C	10.0%	intergenic (‑288/+44)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,248	G→C	10.0%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,251	G→A	10.2%	intergenic (‑292/+40)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,182,059	G→T	16.8%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,065	T→G	19.7%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,066	C→A	16.8%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,072	A→C	18.1%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,192,759	T→G	13.3%	intergenic (+140/‑62)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,192,767	C→G	12.9%	intergenic (+148/‑54)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,194,887	T→G	12.5%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,194,888	C→A	10.7%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,195,985	G→A	10.5%	S177L (TCG→TTG) ‡	ybgJ ←	allophanate hydrolase subunit 1
RA	5,195,986	A→G	10.4%	S177P (TCG→CCG) ‡	ybgJ ←	allophanate hydrolase subunit 1
RA	5,195,989	C→T	10.5%	V176I (GTA→ATA)	ybgJ ←	allophanate hydrolase subunit 1
RA	5,195,990	T→C	10.5%	A175A (GCA→GCG)	ybgJ ←	allophanate hydrolase subunit 1
RA	5,197,452	T→G	13.8%	I378L (ATT→CTT)	PP_4578 ←	MFS transporter
RA	5,197,454	A→T	13.6%	V377D (GTC→GAC)	PP_4578 ←	MFS transporter
RA	5,197,456	C→A	13.8%	K376N (AAG→AAT)	PP_4578 ←	MFS transporter
RA	5,200,026	T→C	6.2%	Y65C (TAC→TGC)	PP_4580 ←	hypothetical protein
RA	5,200,028	G→C	7.3%	H64Q (CAC→CAG)	PP_4580 ←	hypothetical protein
RA	5,200,032	T→C	6.2%	Q63R (CAG→CGG)	PP_4580 ←	hypothetical protein
RA	5,205,608	C→T	5.9%	L275L (CTG→CTA) ‡	PP_4586 ←	hypothetical protein
RA	5,205,609	A→T	5.9%	L275Q (CTG→CAG) ‡	PP_4586 ←	hypothetical protein
RA	5,205,611	T→G	5.9%	Q274H (CAA→CAC)	PP_4586 ←	hypothetical protein
RA	5,205,616	C→A	5.8%	V273L (GTG→TTG)	PP_4586 ←	hypothetical protein
RA	5,205,618	A→T	5.8%	L272* (TTG→TAG) ‡	PP_4586 ←	hypothetical protein
RA	5,205,619	A→G	5.8%	L272L (TTG→CTG) ‡	PP_4586 ←	hypothetical protein
RA	5,225,905	C→A	7.4%	P48H (CCT→CAT)	PP_4605 →	AraC family transcriptional regulator
RA	5,239,884	G→A	10.2%	A144V (GCG→GTG)	ldh ←	leucine dehydrogenase
RA	5,239,889	T→C	10.2%	P142P (CCA→CCG)	ldh ←	leucine dehydrogenase
RA	5,240,567	C→G	5.7%	H43Q (CAC→CAG)	PP_4618 →	hypothetical protein
RA	5,240,569	A→T	5.6%	D44V (GAC→GTC)	PP_4618 →	hypothetical protein
RA	5,240,571	C→G	5.6%	L45V (CTG→GTG)	PP_4618 →	hypothetical protein
RA	5,253,887	G→C	7.1%	F249L (TTC→TTG)	PP_4630 ←	MerR family transcriptional regulator
RA	5,253,891	T→C	7.1%	H248R (CAC→CGC)	PP_4630 ←	MerR family transcriptional regulator
RA	5,256,375	A→C	5.3%	E53A (GAG→GCG)	PP_4633 →	DUF1244 domain‑containing protein
RA	5,262,496	T→A	6.2%	T223T (ACT→ACA)	PP_4638 →	methylenetetrahydrofolate reductase
RA	5,267,505:1	+C	5.2%	coding (91/1518 nt)	PP_4643 →	xanthine/uracil permease family protein
RA	5,267,509	T→A	5.1%	L32Q (CTG→CAG)	PP_4643 →	xanthine/uracil permease family protein
RA	5,278,468	G→C	9.4%	intergenic (+208/‑22)	PP_4652 → / → purP	membrane protein/adenine:H+ symporter
RA	5,278,469	G→C	9.3%	intergenic (+209/‑21)	PP_4652 → / → purP	membrane protein/adenine:H+ symporter
RA	5,278,470	G→C	9.6%	intergenic (+210/‑20)	PP_4652 → / → purP	membrane protein/adenine:H+ symporter
RA	5,280,920	G→T	7.3%	intergenic (+53/+85)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,280,924	T→A	6.7%	intergenic (+57/+81)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,280,925	T→C	6.4%	intergenic (+58/+80)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,280,936	G→C	5.5%	intergenic (+69/+69)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,280,938	T→C	6.0%	intergenic (+71/+67)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,280,939	G→C	5.8%	intergenic (+72/+66)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,280,940	T→G	5.8%	intergenic (+73/+65)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,280,945	A→C	7.4%	intergenic (+78/+60)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,280,950	G→A	6.8%	intergenic (+83/+55)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,280,951	T→A	8.5%	intergenic (+84/+54)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,280,955	A→C	9.2%	intergenic (+88/+50)	trmA → / ← pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
RA	5,288,409	T→A	11.1%	intergenic (‑90/+94)	PP_4660 ← / ← mdaB	LysR family transcriptional regulator/drug activity modulator B
RA	5,288,410	T→A	11.1%	intergenic (‑91/+93)	PP_4660 ← / ← mdaB	LysR family transcriptional regulator/drug activity modulator B
RA	5,289,588	G→C	5.8%	L246L (CTC→CTG) ‡	PP_4663 ←	transmembrane protein
RA	5,289,589	A→T	8.9%	L246H (CTC→CAC) ‡	PP_4663 ←	transmembrane protein
RA	5,289,590	G→C	5.9%	L246V (CTC→GTC) ‡	PP_4663 ←	transmembrane protein
RA	5,293,713	G→A	8.3%	T225I (ACC→ATC)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,293,717	A→C	8.1%	C224G (TGC→GGC)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,293,719	A→T	8.0%	I223N (ATT→AAT)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,293,721	G→T	7.5%	A222A (GCC→GCA)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,293,725	T→C	7.4%	D221G (GAT→GGT)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,297,191	A→C	5.2%	S58A (TCG→GCG)	TpbB ←	diguanylate cyclase
RA	5,297,192	G→C	5.1%	R57R (CGC→CGG)	TpbB ←	diguanylate cyclase
RA	5,297,196	G→T	5.3%	A56D (GCC→GAC)	TpbB ←	diguanylate cyclase
RA	5,297,462	T→G	7.1%	Q155P (CAG→CCG)	PP_4671 ←	hypothetical protein
RA	5,297,467	G→C	7.2%	R153R (CGC→CGG) ‡	PP_4671 ←	hypothetical protein
RA	5,297,468	C→G	7.2%	R153P (CGC→CCC) ‡	PP_4671 ←	hypothetical protein
RA	5,297,469	G→C	7.2%	R153G (CGC→GGC) ‡	PP_4671 ←	hypothetical protein
RA	5,297,474	C→A	7.4%	R151L (CGG→CTG)	PP_4671 ←	hypothetical protein
RA	5,303,355	Δ1 bp	6.2%	coding (418/3675 nt)	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,303,359:1	+G	6.3%	coding (414/3675 nt)	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,307,341	C→G	5.7%	intergenic (‑90/+96)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,307,344	T→C	5.7%	intergenic (‑93/+93)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,307,346	C→G	5.8%	intergenic (‑95/+91)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,338,050	C→G	9.0%	intergenic (+57/‑227)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,338,053	C→G	9.3%	intergenic (+60/‑224)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,338,065	C→T	5.9%	intergenic (+72/‑212)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,344,484	C→G	10.5%	intergenic (+59/‑119)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,345,549	C→A	7.1%	P316Q (CCG→CAG)	acsA‑II →	acetyl‑CoA synthetase
RA	5,345,552	T→G	6.2%	L317R (CTG→CGG)	acsA‑II →	acetyl‑CoA synthetase
RA	5,359,494	G→A	100%	S259L (TCG→TTG)	nusA ←	transcription termination/antitermination factor L
RA	5,360,831	G→T	5.6%	A3D (GCT→GAT)	rimP ←	ribosome maturation factor
RA	5,361,071	A→T	8.4%	intergenic (‑78/+23)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,361,072	A→T	8.5%	intergenic (‑79/+22)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,364,420	C→G	5.3%	G72R (GGT→CGT)	folP ←	dihydropteroate synthase
RA	5,364,421	C→G	5.2%	P71P (CCG→CCC)	folP ←	dihydropteroate synthase
RA	5,367,621	A→T	5.5%	K48M (AAG→ATG)	PP_4720 →	RNA‑binding protein
RA	5,373,993	T→C	100%	T103A (ACA→GCA)	dapB ←	4‑hydroxy‑tetrahydrodipicolinate reductase
RA	5,375,213	T→G	5.3%	P76P (CCA→CCC)	dnaJ ←	chaperone protein DnaJ
RA	5,375,222	A→C	5.3%	G73G (GGT→GGG)	dnaJ ←	chaperone protein DnaJ
RA	5,375,225	T→A	6.0%	A72A (GCA→GCT)	dnaJ ←	chaperone protein DnaJ
RA	5,379,928	T→C	8.1%	F505L (TTC→CTC)	recN →	DNA repair/recombination protein
RA	5,381,267	T→C	8.6%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,268	T→A	8.3%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,269	G→A	8.3%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,382,269	A→T	10.0%	E124D (GAA→GAT)	smpB →	SsrA‑binding protein
RA	5,382,270	A→T	8.2%	I125F (ATC→TTC)	smpB →	SsrA‑binding protein
RA	5,388,876	C→A	12.1%	L796M (CTG→ATG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,877	T→G	13.3%	L796R (CTG→CGG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,882	C→A	11.8%	L798M (CTG→ATG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,883	T→G	11.7%	L798R (CTG→CGG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,428,065	A→T	6.7%	L13Q (CTG→CAG)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,430,392	A→G	6.5%	intergenic (‑74/+87)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,396	A→G	6.8%	intergenic (‑78/+83)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,397:1	+A	6.8%	intergenic (‑79/+82)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,404	Δ1 bp	6.5%	intergenic (‑86/+75)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,406	C→T	6.8%	intergenic (‑88/+73)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,410	C→T	6.6%	intergenic (‑92/+69)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,432,011	G→A	6.6%	V203M (GTG→ATG) ‡	PP_4771 →	membrane protein
RA	5,432,012	T→C	6.6%	V203A (GTG→GCG) ‡	PP_4771 →	membrane protein
RA	5,458,892:1	+A	6.5%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,458,898	Δ1 bp	6.5%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,485,150	A→G	19.5%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,497,921	C→G	7.2%	L332V (CTG→GTG)	cobL →	precorrin‑6Y C(5,15)‑methyltransferase
RA	5,497,924	G→C	7.6%	D333H (GAC→CAC)	cobL →	precorrin‑6Y C(5,15)‑methyltransferase
RA	5,506,593	G→A	14.8%	intergenic (+52/‑147)	PP_4839 → / → cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,507,015	C→A	6.7%	P92P (CCC→CCA)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,507,016	T→G	5.9%	W93G (TGG→GGG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,507,604	G→C	8.2%	A289P (GCG→CCG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,507,607	G→C	8.2%	A290P (GCG→CCG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,513,985	T→G	7.9%	Y204D (TAC→GAC) ‡	urtE →	ABC transporter ATP‑binding protein
RA	5,513,986	A→T	7.9%	Y204F (TAC→TTC) ‡	urtE →	ABC transporter ATP‑binding protein
RA	5,513,987	C→A	7.9%	Y204* (TAC→TAA) ‡	urtE →	ABC transporter ATP‑binding protein
RA	5,518,544	G→C	5.1%	P13A (CCC→GCC)	PP_4850 ←	membrane protein
RA	5,518,546	A→T	5.1%	I12N (ATT→AAT)	PP_4850 ←	membrane protein
RA	5,518,548	G→C	5.2%	G11G (GGC→GGG)	PP_4850 ←	membrane protein
RA	5,535,979	C→A	6.8%	A332A (GCC→GCA)	pncB →	nicotinate phosphoribosyltransferase
RA	5,535,980	C→G	6.8%	L333V (CTG→GTG) ‡	pncB →	nicotinate phosphoribosyltransferase
RA	5,535,981	T→G	6.4%	L333R (CTG→CGG) ‡	pncB →	nicotinate phosphoribosyltransferase
RA	5,537,061	A→T	10.8%	intergenic (+38/+65)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,075	G→C	9.8%	intergenic (+52/+51)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,538,568	A→T	8.2%	intergenic (+58/+63)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,569	A→T	9.9%	intergenic (+59/+62)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,571	G→C	8.4%	intergenic (+61/+60)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,573	A→T	9.1%	intergenic (+63/+58)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,574	A→T	11.1%	intergenic (+64/+57)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,577	G→T	9.1%	intergenic (+67/+54)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,539,489	A→C	9.0%	R499R (CGT→CGG)	PP_4872 ←	hypothetical protein
RA	5,539,492	G→T	8.5%	A498A (GCC→GCA)	PP_4872 ←	hypothetical protein
JC	5,555,608	+GCC	89.1%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,557,551	G→A	6.4%	Q27* (CAG→TAG)	PP_4888 ←	methyl‑accepting chemotaxis transducer
RA	5,557,922	T→G	8.8%	intergenic (‑293/+38)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,557,923	C→A	10.1%	intergenic (‑294/+37)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,557,924	T→G	7.4%	intergenic (‑295/+36)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,557,925	C→A	7.6%	intergenic (‑296/+35)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,565,749	G→A	6.7%	H579H (CAC→CAT)	mutL ←	DNA mismatch repair protein MutL
RA	5,565,754	A→T	7.8%	C578S (TGC→AGC)	mutL ←	DNA mismatch repair protein MutL
RA	5,565,755	A→T	8.6%	A577A (GCT→GCA)	mutL ←	DNA mismatch repair protein MutL
RA	5,565,760	T→C	6.4%	M576V (ATG→GTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,413	T→A	5.9%	Q358L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,416	T→A	6.7%	Q357L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,957	C→G	7.5%	E177Q (GAA→CAA)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,959	T→A	7.5%	Q176L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,961	C→G	7.4%	L175F (TTG→TTC)	mutL ←	DNA mismatch repair protein MutL
RA	5,569,700	C→A	10.0%	L183L (CTG→CTT)	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,569,705	T→G	10.1%	K182Q (AAG→CAG)	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,572,201	C→T	7.8%	intergenic (‑71/+21)	yicG ← / ← orn	inner membrane protein/oligoribonuclease
RA	5,572,202	A→T	8.1%	intergenic (‑72/+20)	yicG ← / ← orn	inner membrane protein/oligoribonuclease
RA	5,572,203	A→G	8.2%	intergenic (‑73/+19)	yicG ← / ← orn	inner membrane protein/oligoribonuclease
RA	5,583,521	T→C	8.3%	P737P (CCA→CCG)	parC ←	DNA topoisomerase IV subunit A
RA	5,583,528	T→A	8.9%	K735M (AAG→ATG) ‡	parC ←	DNA topoisomerase IV subunit A
RA	5,583,529	T→A	8.4%	K735* (AAG→TAG) ‡	parC ←	DNA topoisomerase IV subunit A
RA	5,619,466	C→T	7.1%	T345T (ACG→ACA)	PP_4938 ←	glycosyl transferase
RA	5,619,471	A→G	7.0%	C344R (TGT→CGT)	PP_4938 ←	glycosyl transferase
RA	5,622,932	A→C	7.4%	M269R (ATG→AGG) ‡	PP_4941 ←	hypothetical protein
RA	5,622,933	T→A	8.0%	M269L (ATG→TTG) ‡	PP_4941 ←	hypothetical protein
RA	5,622,934	G→T	8.7%	A268A (GCC→GCA)	PP_4941 ←	hypothetical protein
RA	5,623,395	G→T	6.4%	R115R (CGG→AGG)	PP_4941 ←	hypothetical protein
RA	5,623,396	A→C	6.4%	P114P (CCT→CCG)	PP_4941 ←	hypothetical protein
RA	5,629,625	G→T	12.6%	A214D (GCT→GAT)	putP ←	sodium/L‑proline transporter
RA	5,641,185	G→C	7.1%	G283A (GGC→GCC) ‡	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,641,186	C→G	7.1%	G283G (GGC→GGG) ‡	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,641,187	G→C	7.0%	A284P (GCG→CCG)	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,645,307	C→T	6.8%	A220A (GCC→GCT)	PP_4954 →	membrane protein
RA	5,645,311	C→T	6.7%	L222L (CTG→TTG) ‡	PP_4954 →	membrane protein
RA	5,645,313	G→C	6.7%	L222L (CTG→CTC) ‡	PP_4954 →	membrane protein
RA	5,645,315	A→G	6.9%	N223S (AAC→AGC)	PP_4954 →	membrane protein
RA	5,645,319	A→G	6.7%	A224A (GCA→GCG)	PP_4954 →	membrane protein
RA	5,646,266	A→T	7.7%	D540V (GAC→GTC)	PP_4954 →	membrane protein
RA	5,650,666	A→T	5.7%	I176N (ATC→AAC)	PP_4959 ←	diguanylate cyclase
RA	5,651,374	T→G	9.9%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,377	C→A	10.3%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,655,626:1	+A	15.2%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,631	T→G	17.3%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	17.8%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,657,956	G→A	7.2%	R4H (CGT→CAT)	sahR →	methionine metabolism transcriptional regulator
RA	5,661,885	C→G	6.2%	L504V (CTG→GTG) ‡	ligB →	DNA ligase B
RA	5,661,887	G→C	6.0%	L504L (CTG→CTC) ‡	ligB →	DNA ligase B
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
JC	5,681,415	+CGGG	94.1%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,683,416	T→C	6.2%	Q1159Q (CAA→CAG) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,683,417	T→A	6.3%	Q1159L (CAA→CTA) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,683,418	G→A	6.4%	Q1159* (CAA→TAA) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,809	T→A	6.5%	D695V (GAC→GTC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,812	A→G	6.4%	V694A (GTG→GCG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,814	G→C	6.6%	A693A (GCC→GCG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,699,749	A→G	8.2%	D76G (GAC→GGC) ‡	phaA →	poly(3‑hydroxyalkanoate) polymerase
RA	5,699,750	C→T	9.3%	D76D (GAC→GAT) ‡	phaA →	poly(3‑hydroxyalkanoate) polymerase
RA	5,714,808	C→G	6.9%	I56M (ATC→ATG)	hisE →	phosphoribosyl‑ATP pyrophosphatase
RA	5,722,412	G→C	8.2%	A269A (GCC→GCG)	PP_5023 ←	amino acid ABC transporter permease
RA	5,722,415	G→C	7.8%	I268M (ATC→ATG)	PP_5023 ←	amino acid ABC transporter permease
RA	5,736,522:1	+G	6.2%	coding (924/1674 nt)	hutU ←	urocanate hydratase
RA	5,736,533	Δ1 bp	6.2%	coding (913/1674 nt)	hutU ←	urocanate hydratase
RA	5,737,599	G→C	10.6%	intergenic (‑154/+48)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,737,602	G→C	10.5%	intergenic (‑157/+45)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,740,467	T→G	31.2%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,470	A→T	21.4%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,471	A→T	20.5%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,474	C→A	20.6%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,741,209	A→G	5.5%	L41L (TTG→CTG)	PP_5038 ←	lipoprotein
RA	5,743,331	G→A	11.6%	intergenic (‑164/+83)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,335	T→C	12.3%	intergenic (‑168/+79)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,349	A→G	5.5%	intergenic (‑182/+65)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,351	A→C	6.4%	intergenic (‑184/+63)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,352	G→T	5.5%	intergenic (‑185/+62)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,362	T→C	5.2%	intergenic (‑195/+52)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,365	A→G	5.3%	intergenic (‑198/+49)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,373	A→C	6.4%	intergenic (‑206/+41)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,374	G→T	6.4%	intergenic (‑207/+40)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,375	A→G	6.6%	intergenic (‑208/+39)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,376	C→T	6.7%	intergenic (‑209/+38)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,746,485	G→C	8.5%	intergenic (+32/+67)	PP_5042 → / ← PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
RA	5,746,488	G→C	8.5%	intergenic (+35/+64)	PP_5042 → / ← PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
RA	5,749,046	G→T	6.7%	Q312K (CAG→AAG)	typA ←	ribosome associated GTPase
RA	5,749,047	G→C	6.6%	F311L (TTC→TTG)	typA ←	ribosome associated GTPase
RA	5,750,060	C→T	7.1%	intergenic (‑81/+48)	typA ← / ← thiI	ribosome associated GTPase/tRNA sulfurtransferase
RA	5,751,725	A→G	7.1%	intergenic (‑163/‑308)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,735	A→C	7.0%	intergenic (‑173/‑298)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,736	A→C	8.0%	intergenic (‑174/‑297)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,740	C→T	7.5%	intergenic (‑178/‑293)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,764,798	C→T	7.7%	A260V (GCC→GTC)	ctpA →	carboxy‑terminal‑processing protease
RA	5,764,801	A→G	7.8%	D261G (GAC→GGC)	ctpA →	carboxy‑terminal‑processing protease
RA	5,772,819	C→G	8.6%	V48V (GTG→GTC) ‡	betT‑I ←	choline transporter
RA	5,772,820	A→T	7.9%	V48E (GTG→GAG) ‡	betT‑I ←	choline transporter
RA	5,772,821	C→G	8.5%	V48L (GTG→CTG) ‡	betT‑I ←	choline transporter
RA	5,792,841	A→C	5.2%	C164G (TGC→GGC)	gltD ←	glutamate synthase subunit beta
RA	5,792,843	C→G	5.7%	G163A (GGC→GCC)	gltD ←	glutamate synthase subunit beta
RA	5,792,846	A→C	5.2%	L162R (CTG→CGG)	gltD ←	glutamate synthase subunit beta
RA	5,792,851	C→G	5.1%	A160A (GCG→GCC)	gltD ←	glutamate synthase subunit beta
RA	5,792,855	G→T	5.6%	P159Q (CCG→CAG)	gltD ←	glutamate synthase subunit beta
RA	5,792,858	C→G	5.5%	G158A (GGC→GCC)	gltD ←	glutamate synthase subunit beta
RA	5,792,860	G→T	6.5%	A157A (GCC→GCA)	gltD ←	glutamate synthase subunit beta
RA	5,807,985	T→C	5.5%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,986	G→A	5.8%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,987	C→T	5.9%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,811,285	G→A	5.2%	E205K (GAA→AAA)	priA →	primosome assembly protein
RA	5,813,216	A→T	5.5%	N46I (AAC→ATC)	argS →	arginine‑‑tRNA ligase
RA	5,813,220	C→G	5.5%	I47M (ATC→ATG)	argS →	arginine‑‑tRNA ligase
RA	5,813,223	C→G	5.3%	A48A (GCC→GCG)	argS →	arginine‑‑tRNA ligase
RA	5,813,227	A→T	5.5%	M50L (ATG→TTG)	argS →	arginine‑‑tRNA ligase
RA	5,816,730	G→C	6.3%	L180F (TTG→TTC)	PP_5092 →	NLP/P60 protein
RA	5,816,853	A→G	8.3%	intergenic (+39/+90)	PP_5092 → / ← pilT	NLP/P60 protein/twitching motility protein
RA	5,845,595:1	+A	5.7%	intergenic (+20/‑82)	coaD → / → yfhL	phosphopantetheine adenylyltransferase/4Fe‑4S cluster‑containing protein
RA	5,845,602	Δ1 bp	5.7%	intergenic (+27/‑75)	coaD → / → yfhL	phosphopantetheine adenylyltransferase/4Fe‑4S cluster‑containing protein
RA	5,845,963	G→A	7.8%	intergenic (+35/+56)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,845,972	T→C	7.7%	intergenic (+44/+47)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,845,977	C→T	6.8%	intergenic (+49/+42)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,851,171	T→A	6.6%	intergenic (+34/+34)	ilvD → / ← PP_5129	dihydroxy‑acid dehydratase/hypothetical protein
RA	5,856,783	C→A	5.1%	P237H (CCC→CAC)	PP_5133 →	membrane protein
RA	5,861,063	G→C	6.8%	F222L (TTC→TTG)	PP_5136 ←	ABC transporter permease
RA	5,866,696	G→T	8.3%	intergenic (+19/+38)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,866,697	A→C	8.7%	intergenic (+20/+37)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,867,733:1	+C	7.3%	intergenic (‑28/+24)	thyA ← / ← lgt	thymidylate synthase/prolipoprotein diacylglyceryl transferase
RA	5,867,738	Δ1 bp	6.8%	intergenic (‑33/+19)	thyA ← / ← lgt	thymidylate synthase/prolipoprotein diacylglyceryl transferase
RA	5,871,628	A→G	5.6%	L342P (CTC→CCC) ‡	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,871,629	G→C	5.6%	L342V (CTC→GTC) ‡	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,871,634	G→C	5.6%	A340G (GCC→GGC)	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,882,090	C→T	7.0%	T217T (ACC→ACT)	serA →	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase
RA	5,882,091	C→G	6.9%	Q218E (CAG→GAG) ‡	serA →	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase
RA	5,882,092	A→G	6.7%	Q218R (CAG→CGG) ‡	serA →	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase
RA	5,886,764	C→G	6.8%	W84C (TGG→TGC)	PP_5161 ←	lysophospholipase
RA	5,886,769	C→G	7.3%	A83P (GCA→CCA)	PP_5161 ←	lysophospholipase
RA	5,898,904	G→C	7.3%	R662G (CGG→GGG)	PP_5173 ←	RND family transporter
RA	5,898,908	C→G	6.4%	V660V (GTG→GTC) ‡	PP_5173 ←	RND family transporter
RA	5,898,909	A→G	6.1%	V660A (GTG→GCG) ‡	PP_5173 ←	RND family transporter
RA	5,898,910	C→T	6.2%	V660M (GTG→ATG) ‡	PP_5173 ←	RND family transporter
RA	5,898,911	C→G	7.2%	P659P (CCG→CCC)	PP_5173 ←	RND family transporter
RA	5,898,915	G→C	6.3%	P658R (CCG→CGG)	PP_5173 ←	RND family transporter
RA	5,903,148	G→A	8.9%	intergenic (‑112/‑156)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,164	G→T	11.6%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,165	A→C	20.4%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,919,685	C→G	6.3%	P91A (CCC→GCC) ‡	PP_5190 →	type II secretion system protein
RA	5,919,686	C→G	6.3%	P91R (CCC→CGC) ‡	PP_5190 →	type II secretion system protein
RA	5,919,687	C→G	6.3%	P91P (CCC→CCG) ‡	PP_5190 →	type II secretion system protein
RA	5,944,535	C→T	6.8%	intergenic (‑301/+39)	PP_5211 ← / ← PP_5212	ChaC‑related protein/iron‑sulfur‑binding oxidoreductase
RA	5,944,536	A→T	6.9%	intergenic (‑302/+38)	PP_5211 ← / ← PP_5212	ChaC‑related protein/iron‑sulfur‑binding oxidoreductase
RA	5,944,537	A→G	6.9%	intergenic (‑303/+37)	PP_5211 ← / ← PP_5212	ChaC‑related protein/iron‑sulfur‑binding oxidoreductase
RA	5,947,318	G→C	5.4%	L386V (CTG→GTG)	rho ←	transcription termination factor Rho
RA	5,955,845	T→G	7.2%	intergenic (+71/+133)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,956,964	A→G	6.7%	Q123R (CAG→CGG)	cyaA →	adenylate cyclase
RA	5,959,995	A→T	5.0%	noncoding (74/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,959,996	A→T	5.2%	noncoding (73/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,962,273	A→C	10.2%	D390A (GAC→GCC)	lysA‑II →	diaminopimelate decarboxylase
RA	5,962,276	G→T	10.0%	G391V (GGC→GTC)	lysA‑II →	diaminopimelate decarboxylase
RA	5,963,846	T→G	7.6%	Y216D (TAT→GAT)	PP_5229 →	hypothetical protein
RA	5,963,851	C→A	7.5%	I217I (ATC→ATA)	PP_5229 →	hypothetical protein
RA	5,980,179	A→G	6.2%	Q275R (CAG→CGG) ‡	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,980,180	G→C	6.2%	Q275H (CAG→CAC) ‡	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,980,181	C→T	6.1%	R276W (CGG→TGG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,982,802	C→G	6.5%	G1149G (GGC→GGG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,982,805	C→G	6.2%	F1150L (TTC→TTG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,982,808	C→G	5.7%	N1151K (AAC→AAG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,984,436	T→C	20.2%	intergenic (+32/+57)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,442	G→A	16.7%	intergenic (+38/+51)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,444	T→C	18.2%	intergenic (+40/+49)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,447	G→A	16.4%	intergenic (+43/+46)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,449	T→C	17.6%	intergenic (+45/+44)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,455	G→A	16.4%	intergenic (+51/+38)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,988,809	G→A	21.8%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	23.1%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	21.4%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	21.1%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	21.0%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	19.5%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	20.4%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	21.1%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	21.0%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	22.1%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	23.7%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	23.7%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	25.5%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	28.8%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	28.8%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	31.0%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	32.3%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,995,966	A→C	6.0%	F356V (TTC→GTC)	PP_5252 ←	hypothetical protein
RA	6,011,493	G→C	9.2%	K115N (AAG→AAC)	rep →	single‑stranded DNA dependent ATPase
RA	6,011,496	G→C	9.3%	A116A (GCG→GCC)	rep →	single‑stranded DNA dependent ATPase
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,039,236	C→T	9.2%	intergenic (‑256/+38)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,240	G→T	9.2%	intergenic (‑260/+34)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,241	A→C	9.2%	intergenic (‑261/+33)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,245	A→G	9.2%	intergenic (‑265/+29)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,043,666	T→A	6.6%	intergenic (+18/+16)	gmk → / ← PP_5297	deoxyguanylate kinase/guanylate kinase/amino acid transporter
RA	6,060,463	G→A	6.2%	intergenic (+99/+82)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,060,485	T→G	7.1%	intergenic (+121/+60)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,060,489	T→C	8.6%	intergenic (+125/+56)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,071,883	C→G	5.6%	L214F (TTG→TTC)	pstB‑II ←	phosphate ABC transporter ATP‑binding protein
RA	6,073,443	T→C	8.5%	P271P (CCA→CCG) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,073,444	G→A	8.5%	P271L (CCA→CTA) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,073,447	T→C	8.5%	Q270R (CAG→CGG) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,073,448	G→A	8.3%	Q270* (CAG→TAG) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,075,747	G→C	5.2%	A272G (GCC→GGC)	PP_5328 ←	phosphate ABC transporter permease
RA	6,087,347	T→A	5.4%	L290Q (CTG→CAG)	oruR →	ornithine utilization transcriptional regulator
RA	6,096,215	A→T	7.1%	G161G (GGT→GGA)	pycA ←	pyruvate carboxylase subunit A
RA	6,096,220	A→T	8.0%	S160T (TCC→ACC)	pycA ←	pyruvate carboxylase subunit A
RA	6,103,967	G→T	5.5%	R267L (CGC→CTC)	PP_5353 →	hypothetical protein
RA	6,103,972	C→T	5.5%	Q269* (CAA→TAA) ‡	PP_5353 →	hypothetical protein
RA	6,103,973	A→T	5.4%	Q269L (CAA→CTA) ‡	PP_5353 →	hypothetical protein
RA	6,103,974	A→G	5.4%	Q269Q (CAA→CAG) ‡	PP_5353 →	hypothetical protein
RA	6,103,979	A→C	5.7%	E271A (GAG→GCG)	PP_5353 →	hypothetical protein
RA	6,122,074	G→T	5.9%	P26T (CCC→ACC)	PP_5371 ←	rubredoxin/rubredoxin reductase
RA	6,126,949	A→G	5.1%	intergenic (+40/+27)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,143,642	A→G	9.1%	T75A (ACC→GCC) ‡	cusF →	copper efflux protein
RA	6,143,643	C→T	9.2%	T75I (ACC→ATC) ‡	cusF →	copper efflux protein
RA	6,155,806	A→G	7.8%	S121P (TCG→CCG)	PP_5399 ←	hypothetical protein
RA	6,162,510	G→A	6.4%	P255L (CCA→CTA)	PP_5404 ←	TnsC‑like transposition protein
RA	6,171,841:1	+C	5.0%	coding (461/1836 nt)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,173,232	C→T	5.3%	intergenic (‑151/+39)	PP_5410 ← / ← glmU	DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,173,233	A→G	6.2%	intergenic (‑152/+38)	PP_5410 ← / ← glmU	DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,173,234	C→A	5.4%	intergenic (‑153/+37)	PP_5410 ← / ← glmU	DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,174,708	G→T	15.4%	intergenic (‑70/+49)	glmU ← / ← atpC	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon
RA	6,174,709	A→C	15.2%	intergenic (‑71/+48)	glmU ← / ← atpC	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	1124471	1124601	131	22 [20]	[18] 21	gcvT‑I	aminomethyltransferase
*	*	÷	NC_002947	2837028	2837223	196	22 [19]	[20] 21	[sad‑I]	[sad‑I]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 62692	61 (1.010)	4 (0.070)	4/248	NT	5.7%	coding (937/1269 nt)	PP_0053	sulfide:quinone oxidoreductase
	?	NC_002947	= 62746	74 (1.310)					coding (991/1269 nt)	PP_0053	sulfide:quinone oxidoreductase
*	?	NC_002947	86750 =	60 (1.000)	6 (0.110)	6/232	NT	10.6%	intergenic (‑33/+112)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	86841 =	48 (0.910)					intergenic (‑124/+21)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	87928 =	62 (1.030)	4 (0.070)	4/248	NT	6.9%	coding (1390/1518 nt)	betC	choline‑sulfatase
	?	NC_002947	87973 =	50 (0.880)					coding (1345/1518 nt)	betC	choline‑sulfatase
*	?	NC_002947	100443 =	54 (0.900)	3 (0.060)	3/230	NT	5.7%	intergenic (‑35/+87)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	100525 =	53 (1.010)					intergenic (‑117/+5)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
*	?	NC_002947	= 107019	71 (1.180)	6 (0.100)	4/252	NT	8.2%	coding (886/1518 nt)	PP_0101	sulfate transporter
	?	NC_002947	= 107078	67 (1.170)					coding (945/1518 nt)	PP_0101	sulfate transporter
*	?	NC_002947	= 135265	79 (1.310)	6 (0.100)	4/254	NT	7.3%	coding (1161/1938 nt)	PP_0129	GGDEF domain‑containing protein
	?	NC_002947	= 135300	76 (1.310)					coding (1196/1938 nt)	PP_0129	GGDEF domain‑containing protein
*	?	NC_002947	167936 =	69 (1.150)	5 (0.090)	5/254	NT	6.4%	coding (308/918 nt)	gcdR	gcdH transcriptional regulator
	?	NC_002947	167990 =	80 (1.380)					coding (254/918 nt)	gcdR	gcdH transcriptional regulator
*	?	NC_002947	= 174906	NA (NA)	9 (0.160)	7/254	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	202159 =	59 (0.980)	3 (0.050)	3/254	NT	5.3%	coding (7665/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	202193 =	51 (0.880)					coding (7699/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	222180 =	80 (1.330)	4 (0.070)	4/242	NT	5.7%	coding (35/1020 nt)	PP_0170	ABC transporter substrate‑binding protein
	?	NC_002947	222241 =	59 (1.070)					coding (96/1020 nt)	PP_0170	ABC transporter substrate‑binding protein
*	?	NC_002947	= 229096	73 (1.210)	6 (0.110)	4/248	NT	7.3%	coding (1922/2088 nt)	PP_0176	putative efflux transporter
	?	NC_002947	= 229123	83 (1.470)					coding (1949/2088 nt)	PP_0176	putative efflux transporter
*	?	NC_002947	= 239803	46 (0.760)	3 (0.050)	3/250	NT	5.3%	coding (98/1128 nt)	PP_0188	uroporphyrin‑III C‑methyltransferase
	?	NC_002947	= 239861	64 (1.120)					coding (156/1128 nt)	PP_0188	uroporphyrin‑III C‑methyltransferase
*	?	NC_002947	250227 =	71 (1.180)	4 (0.070)	4/244	NT	6.2%	coding (976/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	250271 =	56 (1.010)					coding (932/1347 nt)	nfeD	membrane bound peptidase NefD
*	?	NC_002947	254201 =	58 (0.960)	3 (0.050)	3/248	NT	5.7%	coding (916/1731 nt)	PP_0203	dipeptidase
	?	NC_002947	254273 =	44 (0.780)					coding (844/1731 nt)	PP_0203	dipeptidase
*	?	NC_002947	= 260854	66 (1.100)	4 (0.070)	4/250	NT	6.1%	coding (184/852 nt)	tauB‑I	taurine ABC transporter ATP‑binding protein
	?	NC_002947	= 260891	60 (1.050)					coding (221/852 nt)	tauB‑I	taurine ABC transporter ATP‑binding protein
*	?	NC_002947	273552 =	58 (0.960)	3 (0.050)	3/250	NT	5.6%	coding (216/1110 nt)	metNB	methionine ABC transporter ATP‑binding protein
	?	NC_002947	273628 =	47 (0.820)					coding (140/1110 nt)	metNB	methionine ABC transporter ATP‑binding protein
*	?	NC_002947	= 283827	59 (0.980)	4 (0.070)	3/250	NT	6.1%	coding (1278/2004 nt)	betT‑II	choline/carnitine/betaine transporter
	?	NC_002947	= 283875	68 (1.190)					coding (1326/2004 nt)	betT‑II	choline/carnitine/betaine transporter
*	?	NC_002947	286426 =	69 (1.150)	4 (0.070)	4/252	NT	5.9%	coding (697/789 nt)	tauB‑II	taurine ABC transporter ATP‑binding protein
	?	NC_002947	286497 =	61 (1.060)					coding (626/789 nt)	tauB‑II	taurine ABC transporter ATP‑binding protein
*	?	NC_002947	= 291317	79 (1.310)	4 (0.070)	4/250	NT	5.1%	coding (378/594 nt)	ssuE	NAD(P)H‑dependent FMN reductase subunit
	?	NC_002947	= 291358	73 (1.280)					coding (419/594 nt)	ssuE	NAD(P)H‑dependent FMN reductase subunit
*	?	NC_002947	319049 =	62 (1.030)	3 (0.050)	3/248	NT	5.7%	coding (693/1815 nt)	PP_0264	sensor histidine kinase
	?	NC_002947	319095 =	41 (0.720)					coding (647/1815 nt)	PP_0264	sensor histidine kinase
*	?	NC_002947	324733 =	67 (1.110)	7 (0.120)	6/250	NT	9.6%	coding (19/1320 nt)	oprQ	outer‑membrane porin D
	?	NC_002947	324772 =	69 (1.210)					coding (58/1320 nt)	oprQ	outer‑membrane porin D
*	?	NC_002947	326515 =	56 (0.930)	3 (0.050)	3/246	NT	5.4%	coding (1218/1668 nt)	PP_0269	glutamate synthase large subunit
	?	NC_002947	326560 =	52 (0.930)					coding (1173/1668 nt)	PP_0269	glutamate synthase large subunit
*	?	NC_002947	= 356708	40 (0.660)	3 (0.050)	3/246	NT	5.9%	coding (53/1377 nt)	tdcG‑I	L‑serine dehydratase
	?	NC_002947	= 356769	59 (1.050)					coding (114/1377 nt)	tdcG‑I	L‑serine dehydratase
*	?	NC_002947	401314 =	33 (0.550)	6 (0.110)	3/238	NT	12.9%	coding (900/1059 nt)	PP_0334	transposase
	?	NC_002947	401370 =	51 (0.940)					coding (956/1059 nt)	PP_0334	transposase
*	?	NC_002947	402553 =	67 (1.110)	3 (0.050)	3/250	NT	5.9%	coding (645/669 nt)	msrA	peptide methionine sulfoxide reductase MsrA
	?	NC_002947	402652 =	32 (0.560)					coding (546/669 nt)	msrA	peptide methionine sulfoxide reductase MsrA
*	?	NC_002947	= 416429	61 (1.010)	5 (0.080)	5/258	NT	6.9%	coding (139/1125 nt)	waaG	lipopolysaccharide glucosyltransferase I
	?	NC_002947	= 416495	76 (1.290)					coding (205/1125 nt)	waaG	lipopolysaccharide glucosyltransferase I
*	?	NC_002947	420969 =	64 (1.060)	6 (0.110)	4/248	NT	9.3%	coding (1269/1443 nt)	PP_0347	hypothetical protein
	?	NC_002947	421018 =	57 (1.010)					coding (1318/1443 nt)	PP_0347	hypothetical protein
*	?	NC_002947	423457 =	79 (1.310)	7 (0.120)	3/254	NT	9.5%	coding (491/2787 nt)	PP_0348	hypothetical protein
	?	NC_002947	423514 =	57 (0.980)					coding (434/2787 nt)	PP_0348	hypothetical protein
*	?	NC_002947	431740 =	68 (1.130)	5 (0.090)	4/254	NT	7.7%	coding (574/1938 nt)	PP_0354	CBS domain‑containing protein
	?	NC_002947	431794 =	54 (0.930)					coding (520/1938 nt)	PP_0354	CBS domain‑containing protein
*	?	NC_002947	440489 =	63 (1.050)	4 (0.070)	4/250	NT	6.7%	coding (430/1059 nt)	bioB	biotin synthase
	?	NC_002947	440519 =	51 (0.890)					coding (460/1059 nt)	bioB	biotin synthase
*	?	NC_002947	476264 =	76 (1.260)	4 (0.070)	4/248	NT	5.7%	coding (556/1026 nt)	tsaD	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
	?	NC_002947	476325 =	61 (1.080)					coding (617/1026 nt)	tsaD	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
*	?	NC_002947	478258 =	38 (0.630)	3 (0.050)	3/260	NT	7.7%	intergenic (+6/+104)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478359 =	35 (0.590)					intergenic (+107/+3)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
*	?	NC_002947	= 516851	80 (1.330)	5 (0.090)	5/244	NT	6.0%	coding (141/783 nt)	PP_0429	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 516873	84 (1.510)					coding (119/783 nt)	PP_0429	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	524240 =	46 (0.760)	4 (0.100) +46 bp	3/172	NT	8.5%	intergenic (+107/‑709)	tyrS/PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
	?	NC_002947	= 697255	86 (1.430)					intergenic (+182/‑569)	mmsA‑I/PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
*	?	NC_002947	= 552188	84 (1.400)	5 (0.090)	5/254	NT	6.1%	coding (488/603 nt)	rplD	50S ribosomal protein L4
	?	NC_002947	= 552215	73 (1.260)					coding (515/603 nt)	rplD	50S ribosomal protein L4
*	?	NC_002947	= 553036	75 (1.250)	4 (0.070)	3/252	NT	5.0%	coding (423/825 nt)	rplB	50S ribosomal protein L2
	?	NC_002947	= 553066	80 (1.390)					coding (453/825 nt)	rplB	50S ribosomal protein L2
*	?	NC_002947	578284 =	74 (1.230)	8 (0.140)	5/244	NT	11.2%	coding (253/951 nt)	fdoH	formate dehydrogenase‑O subunit beta
	?	NC_002947	578345 =	58 (1.040)					coding (314/951 nt)	fdoH	formate dehydrogenase‑O subunit beta
*	?	NC_002947	= 581956	72 (1.200)	8 (0.140)	8/244	NT	10.5%	coding (1246/1428 nt)	selA	selenocysteine synthase
	?	NC_002947	= 581974	70 (1.260)					coding (1264/1428 nt)	selA	selenocysteine synthase
*	?	NC_002947	594771 =	40 (0.660)	4 (0.070)	4/242	NT	8.0%	intergenic (‑10/+117)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
	?	NC_002947	594856 =	55 (1.000)					intergenic (‑95/+32)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
*	?	NC_002947	611927 =	NA (NA)	8 (0.140)	7/246	NT	NA	coding (824/966 nt)	PP_0526	transposase
	?	NC_002947	611970 =	NA (NA)					coding (867/966 nt)	PP_0526	transposase
*	?	NC_002947	619226 =	86 (1.430)	5 (0.090)	4/250	NT	5.9%	coding (772/1329 nt)	pfeS‑I	histidine kinase
	?	NC_002947	619283 =	77 (1.350)					coding (715/1329 nt)	pfeS‑I	histidine kinase
*	?	NC_002947	628581 =	88 (1.460)	5 (0.090)	3/248	NT	5.9%	coding (214/819 nt)	eutC	ethanolamine ammonia‑lyase subunit beta
	?	NC_002947	628637 =	76 (1.340)					coding (158/819 nt)	eutC	ethanolamine ammonia‑lyase subunit beta
*	?	NC_002947	631429 =	45 (0.750)	4 (0.070)	4/250	NT	8.7%	coding (264/1449 nt)	PP_0544	ethanolamine transporter
	?	NC_002947	631522 =	41 (0.720)					coding (171/1449 nt)	PP_0544	ethanolamine transporter
*	?	NC_002947	655539 =	62 (1.030)	4 (0.070)	3/248	NT	6.6%	coding (804/1356 nt)	PP_0563	two‑component system response regulator
	?	NC_002947	655583 =	55 (0.970)					coding (760/1356 nt)	PP_0563	two‑component system response regulator
*	?	NC_002947	= 669450	102 (1.690)	5 (0.090)	5/248	NT	5.3%	coding (892/2355 nt)	pbpC	peptidoglycan glycosyltransferase
	?	NC_002947	= 669506	84 (1.490)					coding (948/2355 nt)	pbpC	peptidoglycan glycosyltransferase
*	?	NC_002947	= 670392	48 (0.800)	3 (0.050)	3/252	NT	6.0%	coding (1834/2355 nt)	pbpC	peptidoglycan glycosyltransferase
	?	NC_002947	= 670445	49 (0.850)					coding (1887/2355 nt)	pbpC	peptidoglycan glycosyltransferase
*	?	NC_002947	671840 =	71 (1.180)	4 (0.070)	3/250	NT	5.6%	coding (895/1725 nt)	PP_0573	hypothetical protein
	?	NC_002947	671875 =	68 (1.190)					coding (930/1725 nt)	PP_0573	hypothetical protein
*	?	NC_002947	= 683425	62 (1.030)	4 (0.070)	4/254	NT	6.8%	intergenic (‑153/+15)	PP_0584/PP_0585	methyl‑accepting chemotaxis transducer/MerR family metal‑sensitive transcriptional regulator
	?	NC_002947	= 683467	50 (0.860)					coding (384/411 nt)	PP_0585	MerR family metal‑sensitive transcriptional regulator
*	?	NC_002947	693480 =	56 (0.930)	5 (0.090)	5/252	NT	8.2%	coding (562/918 nt)	PP_0595	LysR family transcriptional regulator
	?	NC_002947	693523 =	58 (1.010)					coding (519/918 nt)	PP_0595	LysR family transcriptional regulator
*	?	NC_002947	= 706389	73 (1.210)	4 (0.070)	4/252	NT	5.8%	coding (1866/2301 nt)	PP_0599	paraquat‑inducible protein B
	?	NC_002947	= 706408	61 (1.060)					coding (1885/2301 nt)	PP_0599	paraquat‑inducible protein B
*	?	NC_002947	= 713303	75 (1.250)	5 (0.090)	3/252	NT	6.5%	coding (292/531 nt)	lspA	lipoprotein signal peptidase
	?	NC_002947	= 713337	72 (1.250)					coding (326/531 nt)	lspA	lipoprotein signal peptidase
*	?	NC_002947	= 735469	58 (0.960)	3 (0.050)	3/250	NT	5.0%	coding (106/174 nt)	PP_0627	hypothetical protein
	?	NC_002947	= 735508	59 (1.030)					coding (67/174 nt)	PP_0627	hypothetical protein
*	?	NC_002947	745269 =	NA (NA)	6 (0.100)	5/254	NT	NA	coding (1230/1533 nt)	PP_0637	transposase
	?	NC_002947	745314 =	NA (NA)					coding (1185/1533 nt)	PP_0637	transposase
*	?	NC_002947	= 746192	NA (NA)	4 (0.070)	4/258	NT	NA	coding (307/1533 nt)	PP_0637	transposase
	?	NC_002947	= 746226	NA (NA)					coding (273/1533 nt)	PP_0637	transposase
*	?	NC_002947	= 756369	50 (0.830)	3 (0.050)	3/248	NT	6.1%	coding (965/1401 nt)	PP_0646	hypothetical protein
	?	NC_002947	= 756384	45 (0.800)					coding (980/1401 nt)	PP_0646	hypothetical protein
*	?	NC_002947	784492 =	68 (1.130)	4 (0.070)	4/252	NT	6.0%	coding (1434/3831 nt)	PP_0672	sensory box protein
	?	NC_002947	784532 =	61 (1.060)					coding (1394/3831 nt)	PP_0672	sensory box protein
*	?	NC_002947	805730 =	62 (1.030)	6 (0.100)	5/252	NT	9.4%	coding (1600/2832 nt)	PP_0693	hypothetical protein
	?	NC_002947	805768 =	56 (0.970)					coding (1562/2832 nt)	PP_0693	hypothetical protein
*	?	NC_002947	875905 =	44 (0.730)	4 (0.070)	4/248	NT	8.6%	intergenic (‑14/+73)	PP_0760/PP_mr65	membrane protein/YybP‑YkoY
	?	NC_002947	875949 =	44 (0.780)					intergenic (‑58/+29)	PP_0760/PP_mr65	membrane protein/YybP‑YkoY
*	?	NC_002947	= 906270	52 (0.860)	3 (0.050)	3/252	NT	5.8%	coding (281/573 nt)	ampD	N‑acetyl‑anhydromuramyl‑L‑alanine‑amidase
	?	NC_002947	= 906325	48 (0.840)					coding (336/573 nt)	ampD	N‑acetyl‑anhydromuramyl‑L‑alanine‑amidase
*	?	NC_002947	916351 =	71 (1.180)	4 (0.070)	4/256	NT	5.8%	coding (1216/1491 nt)	PP_0798	GGDEF domain‑containing protein
	?	NC_002947	916409 =	61 (1.040)					coding (1158/1491 nt)	PP_0798	GGDEF domain‑containing protein
*	?	NC_002947	946171 =	54 (0.900)	4 (0.070)	4/254	NT	7.2%	coding (1198/1557 nt)	norR	DNA‑binding transcriptional regulator
	?	NC_002947	946217 =	51 (0.880)					coding (1152/1557 nt)	norR	DNA‑binding transcriptional regulator
*	?	NC_002947	= 961820	76 (1.260)	4 (0.070)	4/254	NT	5.1%	coding (595/1035 nt)	selD	selenide, water dikinase
	?	NC_002947	= 961841	76 (1.310)					coding (574/1035 nt)	selD	selenide, water dikinase
*	?	NC_002947	= 969877	72 (1.200)	4 (0.070)	4/256	NT	5.5%	coding (790/1050 nt)	queA	S‑adenosylmethionine:tRNA ribosyltransferase‑isomerase
	?	NC_002947	= 969908	67 (1.150)					coding (821/1050 nt)	queA	S‑adenosylmethionine:tRNA ribosyltransferase‑isomerase
*	?	NC_002947	= 999018	57 (0.950)	3 (0.050)	3/254	NT	5.1%	coding (1101/2292 nt)	PP_0861	outer membrane ferric siderophore receptor
	?	NC_002947	= 999045	56 (0.970)					coding (1074/2292 nt)	PP_0861	outer membrane ferric siderophore receptor
*	?	NC_002947	= 1012811	55 (0.910)	3 (0.050)	3/256	NT	5.1%	coding (1223/1584 nt)	prfC	peptide chain release factor 3
	?	NC_002947	= 1012847	59 (1.010)					coding (1259/1584 nt)	prfC	peptide chain release factor 3
*	?	NC_002947	1023424 =	50 (0.830)	4 (0.070)	4/254	NT	7.5%	coding (289/1635 nt)	dppA‑I	dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1023456 =	50 (0.860)					coding (257/1635 nt)	dppA‑I	dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	= 1032212	73 (1.210)	4 (0.070)	4/252	NT	5.2%	coding (306/1137 nt)	PP_0889	hypothetical protein
	?	NC_002947	= 1032289	76 (1.320)					coding (383/1137 nt)	PP_0889	hypothetical protein
*	?	NC_002947	= 1042220	83 (1.380)	6 (0.110)	4/250	NT	7.1%	coding (30/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase
	?	NC_002947	= 1042247	79 (1.390)					coding (57/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase
*	?	NC_002947	= 1043754	51 (0.850)	3 (0.050)	3/256	NT	5.7%	coding (146/681 nt)	PP_0903	hypothetical protein
	?	NC_002947	= 1043781	50 (0.860)					coding (173/681 nt)	PP_0903	hypothetical protein
*	?	NC_002947	= 1058458	46 (0.760)	4 (0.070)	4/250	NT	7.6%	coding (430/597 nt)	sodB	superoxide dismutase
	?	NC_002947	= 1058535	54 (0.950)					coding (353/597 nt)	sodB	superoxide dismutase
*	?	NC_002947	1085314 =	57 (0.950)	4 (0.070)	4/248	NT	7.5%	coding (285/1440 nt)	tldD	microcin B17 maturation protease
	?	NC_002947	1085358 =	45 (0.800)					coding (329/1440 nt)	tldD	microcin B17 maturation protease
*	?	NC_002947	1114870 =	41 (0.680)	5 (0.100)	4/214	NT	15.3%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114946 =	22 (0.450)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	= 1144793	56 (0.930)	3 (0.050)	3/252	NT	5.1%	coding (541/594 nt)	hemO	heme oxygenase
	?	NC_002947	= 1144826	58 (1.010)					coding (508/594 nt)	hemO	heme oxygenase
*	?	NC_002947	1155357 =	56 (0.930)	4 (0.070)	4/254	NT	7.2%	coding (515/1455 nt)	PP_1013	sensor histidine kinase
	?	NC_002947	1155440 =	49 (0.850)					coding (598/1455 nt)	PP_1013	sensor histidine kinase
*	?	NC_002947	1171718 =	42 (0.700)	4 (0.070)	4/248	NT	10.3%	coding (1335/1380 nt)	xseA	exodeoxyribonuclease 7 large subunit
	?	NC_002947	1171779 =	30 (0.530)					coding (1274/1380 nt)	xseA	exodeoxyribonuclease 7 large subunit
*	?	NC_002947	1227703 =	51 (0.850)	4 (0.070)	4/248	NT	7.6%	coding (883/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein
	?	NC_002947	1227763 =	49 (0.870)					coding (943/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein
*	?	NC_002947	= 1252645	60 (1.000)	4 (0.070)	4/254	NT	6.1%	coding (165/972 nt)	PP_1095	electron transport complex protein
	?	NC_002947	= 1252684	65 (1.120)					coding (126/972 nt)	PP_1095	electron transport complex protein
*	?	NC_002947	1258881 =	44 (0.730)	4 (0.070)	4/254	NT	7.8%	coding (123/651 nt)	PP_1102	hypothetical protein
	?	NC_002947	1258918 =	52 (0.900)					coding (86/651 nt)	PP_1102	hypothetical protein
*	?	NC_002947	1273240 =	60 (1.000)	4 (0.070)	4/256	NT	6.4%	intergenic (+31/+137)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	1273349 =	59 (1.010)					intergenic (+140/+28)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
*	?	NC_002947	1275708 =	43 (0.710)	3 (0.050)	3/250	NT	7.1%	intergenic (‑33/‑309)	PP_5463/PP_5464	hypothetical protein/hypothetical protein
	?	NC_002947	1275749 =	38 (0.670)					intergenic (‑74/‑268)	PP_5463/PP_5464	hypothetical protein/hypothetical protein
*	?	NC_002947	1297009 =	NA (NA)	11 (0.200)	9/246	NT	NA	coding (197/1329 nt)	PP_1133	transposase
	?	NC_002947	1297038 =	NA (NA)					coding (226/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1304757	64 (1.060)	4 (0.070)	4/248	NT	6.1%	coding (640/1257 nt)	livM	branched‑chain amino acid ABC transporter permease
	?	NC_002947	= 1304781	64 (1.130)					coding (616/1257 nt)	livM	branched‑chain amino acid ABC transporter permease
*	?	NC_002947	1311707 =	49 (0.810)	8 (0.150)	8/238	NT	14.4%	intergenic (‑175/+103)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	1311792 =	51 (0.940)					intergenic (‑260/+18)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
*	?	NC_002947	= 1311719	49 (0.810)	4 (0.070)	4/238	NT	7.8%	intergenic (‑187/+91)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	= 1311778	51 (0.940)					intergenic (‑246/+32)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
*	?	NC_002947	1330937 =	NA (NA)	3 (0.050)	3/254	NT	NA	coding (162/1644 nt)	PP_1157	acetolactate synthase
	?	NC_002947	1330981 =	NA (NA)					coding (206/1644 nt)	PP_1157	acetolactate synthase
*	?	NC_002947	= 1375310	57 (0.950)	4 (0.070)	4/256	NT	7.0%	coding (930/1911 nt)	kup	potassium transport system protein Kup
	?	NC_002947	= 1375342	51 (0.870)					coding (962/1911 nt)	kup	potassium transport system protein Kup
*	?	NC_002947	1378432 =	66 (1.100)	6 (0.110)	4/250	NT	8.4%	coding (1843/2643 nt)	PP_1202	phospholipids modification protein
	?	NC_002947	1378493 =	68 (1.190)					coding (1782/2643 nt)	PP_1202	phospholipids modification protein
*	?	NC_002947	= 1389285	51 (0.850)	3 (0.050)	3/248	NT	5.8%	intergenic (+41/‑161)	dps/PP_1211	DNA‑binding stress protein/hypothetical protein
	?	NC_002947	= 1389335	49 (0.870)					intergenic (+91/‑111)	dps/PP_1211	DNA‑binding stress protein/hypothetical protein
*	?	NC_002947	= 1404578	73 (1.210)	4 (0.070)	4/254	NT	5.5%	coding (1104/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 1404605	67 (1.160)					coding (1077/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer
*	?	NC_002947	1436018 =	62 (1.030)	7 (0.120)	6/248	NT	11.1%	intergenic (‑55/+98)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	1436095 =	54 (0.950)					intergenic (‑132/+21)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
*	?	NC_002947	1440000 =	NA (NA)	57 (0.980)	50/254	NT	100%	intergenic (‑331/‑328)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 1844451	0 (0.000)					coding (343/2754 nt)	gacS	sensor protein GacS
*	?	NC_002947	= 1441693	NA (NA)	33 (0.560)	28/258	NT	100%	intergenic (+37/+395)	PP_1260/ghrB	transposase/2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase
	?	NC_002947	1844449 =	0 (0.000)					coding (345/2754 nt)	gacS	sensor protein GacS
*	?	NC_002947	= 1443080	30 (0.500)	4 (0.070)	4/252	NT	10.9%	intergenic (‑18/+158)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
	?	NC_002947	= 1443224	37 (0.640)					intergenic (‑162/+14)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
*	?	NC_002947	= 1451149	62 (1.030)	6 (0.110)	6/250	NT	8.7%	coding (333/906 nt)	PP_1270	LysR family transcriptional regulator
	?	NC_002947	= 1451175	67 (1.180)					coding (359/906 nt)	PP_1270	LysR family transcriptional regulator
*	?	NC_002947	= 1456554	73 (1.210)	4 (0.070)	4/256	NT	5.5%	coding (429/813 nt)	PP_1274	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 1456581	68 (1.160)					coding (402/813 nt)	PP_1274	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	1499507 =	17 (0.280)	10 (0.180)	4/240	NT	17.6%	intergenic (+84/‑80)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 6060505	78 (1.420)					intergenic (+141/+40)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	1507992 =	61 (1.010)	6 (0.100)	4/254	NT	9.0%	coding (393/462 nt)	sspB	ClpXP protease specificity‑enhancing factor
	?	NC_002947	1508041 =	63 (1.090)					coding (442/462 nt)	sspB	ClpXP protease specificity‑enhancing factor
*	?	NC_002947	1545844 =	73 (1.210)	4 (0.070)	4/254	NT	5.5%	coding (259/1548 nt)	ampG	muropeptide permease AmpG
	?	NC_002947	1545877 =	67 (1.160)					coding (226/1548 nt)	ampG	muropeptide permease AmpG
*	?	NC_002947	1559728 =	60 (1.000)	3 (0.050)	3/254	NT	5.3%	coding (320/1122 nt)	PP_1370	group 1 family glycosyl transferase
	?	NC_002947	1559776 =	50 (0.860)					coding (272/1122 nt)	PP_1370	group 1 family glycosyl transferase
*	?	NC_002947	= 1584498	60 (1.000)	6 (0.100)	4/254	NT	8.9%	coding (516/1452 nt)	PP_1388	EmrB/QacA family drug resistance transporter
	?	NC_002947	= 1584545	65 (1.120)					coding (469/1452 nt)	PP_1388	EmrB/QacA family drug resistance transporter
*	?	NC_002947	1586634 =	61 (1.010)	6 (0.100)	5/254	NT	9.2%	coding (772/909 nt)	PP_1391	LysR family transcriptional regulator
	?	NC_002947	1586683 =	60 (1.040)					coding (723/909 nt)	PP_1391	LysR family transcriptional regulator
*	?	NC_002947	= 1628248	60 (1.000)	4 (0.070)	4/252	NT	6.5%	coding (361/591 nt)	mucA	sigma factor AlgU negative regulator
	?	NC_002947	= 1628296	57 (0.990)					coding (409/591 nt)	mucA	sigma factor AlgU negative regulator
*	?	NC_002947	= 1699474	47 (0.780)	4 (0.070)	4/246	NT	6.7%	coding (160/1008 nt)	PP_1494	GGDEF domain‑containing response regulator
	?	NC_002947	= 1699550	67 (1.190)					coding (236/1008 nt)	PP_1494	GGDEF domain‑containing response regulator
*	?	NC_002947	1708953 =	59 (0.980)	6 (0.110)	6/248	NT	10.1%	coding (281/378 nt)	PP_1504	hypothetical protein
	?	NC_002947	1708992 =	51 (0.900)					coding (242/378 nt)	PP_1504	hypothetical protein
*	?	NC_002947	= 1731190	2 (0.030)	4 (0.080)	4/208	NT	51.4%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1731226	6 (0.130)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1731324	34 (0.560)	4 (0.070)	4/250	NT	10.8%	coding (2546/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1731346	34 (0.600)					coding (2524/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1744020	56 (0.930)	3 (0.050)	3/250	NT	5.0%	coding (192/921 nt)	PP_1541	putative Methyltransferase
	?	NC_002947	= 1744048	60 (1.050)					coding (164/921 nt)	PP_1541	putative Methyltransferase
*	?	NC_002947	1780478 =	49 (0.810)	5 (0.090)	4/250	NT	9.2%	coding (866/1197 nt)	dapC	N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	1780513 =	52 (0.910)					coding (831/1197 nt)	dapC	N‑succinyl‑L,L‑diaminopimelate aminotransferase
*	?	NC_002947	1812747 =	66 (1.100)	4 (0.070)	4/252	NT	6.3%	coding (226/1116 nt)	frmA	glutathione‑dependent formaldehyde dehydrogenase
	?	NC_002947	1812797 =	55 (0.960)					coding (276/1116 nt)	frmA	glutathione‑dependent formaldehyde dehydrogenase
*	?	NC_002947	= 1831129	60 (1.000)	4 (0.070)	3/256	NT	6.3%	coding (8/711 nt)	yfiP	hypothetical protein
	?	NC_002947	= 1831158	61 (1.040)					coding (37/711 nt)	yfiP	hypothetical protein
*	?	NC_002947	= 1841236	63 (1.050)	4 (0.070)	4/254	NT	5.8%	coding (767/1029 nt)	ldhA	D‑lactate dehydrogenase
	?	NC_002947	= 1841272	70 (1.210)					coding (731/1029 nt)	ldhA	D‑lactate dehydrogenase
*	?	NC_002947	1853566 =	45 (0.750)	3 (0.050)	3/254	NT	6.0%	coding (288/834 nt)	mazG	modified nucleoside triphosphate pyrophosphohydrolase
	?	NC_002947	1853610 =	51 (0.880)					coding (332/834 nt)	mazG	modified nucleoside triphosphate pyrophosphohydrolase
*	?	NC_002947	= 1867976	50 (0.830)	3 (0.050)	3/250	NT	6.6%	coding (90/1296 nt)	cobB	cobyrinate a,c‑diamide synthase
	?	NC_002947	= 1868016	38 (0.670)					coding (130/1296 nt)	cobB	cobyrinate a,c‑diamide synthase
*	?	NC_002947	= 1870234	62 (1.030)	5 (0.090)	4/250	NT	8.1%	coding (424/924 nt)	cobD	Subunit of adenosylcobinamide‑phosphate synthase beta component
	?	NC_002947	= 1870270	54 (0.950)					coding (460/924 nt)	cobD	Subunit of adenosylcobinamide‑phosphate synthase beta component
*	?	NC_002947	1889257 =	68 (1.130)	4 (0.070)	4/248	NT	6.4%	coding (1016/3480 nt)	PP_1695	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
	?	NC_002947	1889310 =	53 (0.940)					coding (963/3480 nt)	PP_1695	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	1899207 =	68 (1.130)	10 (0.180)	9/244	NT	15.2%	intergenic (+277/‑243)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899289 =	49 (0.880)					intergenic (+359/‑161)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	= 1935465	62 (1.030)	5 (0.090)	4/252	NT	7.8%	coding (730/936 nt)	htrB	lipid A biosynthesis lauroyl acyltransferase
	?	NC_002947	= 1935502	59 (1.030)					coding (767/936 nt)	htrB	lipid A biosynthesis lauroyl acyltransferase
*	?	NC_002947	= 1947800	46 (0.760)	4 (0.080)	4/212	NT	9.1%	intergenic (‑61/+109)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
	?	NC_002947	= 1947867	43 (0.890)					intergenic (‑128/+42)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
*	?	NC_002947	1967145 =	8 (0.130)	4 (0.090)	4/198	NT	36.4%	intergenic (+15/+104)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1967241 =	8 (0.180)					intergenic (+111/+8)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	= 1967177	4 (0.070)	8 (0.180)	4/198	NT	59.3%	intergenic (+47/+72)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	= 1967207	8 (0.180)					intergenic (+77/+42)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	2048794 =	57 (0.950)	3 (0.060)	3/230	NT	6.9%	intergenic (+33/+106)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	2048885 =	31 (0.590)					intergenic (+124/+15)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	2054905 =	59 (0.980)	5 (0.090)	5/252	NT	8.1%	coding (46/1092 nt)	aroC	chorismate synthase
	?	NC_002947	2054977 =	57 (0.990)					coding (118/1092 nt)	aroC	chorismate synthase
*	?	NC_002947	2056387 =	49 (0.810)	4 (0.070)	3/250	NT	8.0%	coding (294/1155 nt)	PP_1831	membrane protein
	?	NC_002947	2056448 =	45 (0.790)					coding (355/1155 nt)	PP_1831	membrane protein
*	?	NC_002947	2086080 =	NA (NA)	5 (0.090)	3/254	NT	NA	coding (195/1302 nt)	PP_1865	transposase
	?	NC_002947	2086120 =	NA (NA)					coding (235/1302 nt)	PP_1865	transposase
*	?	NC_002947	2086243 =	NA (NA)	6 (0.110)	5/248	NT	NA	coding (358/1302 nt)	PP_1865	transposase
	?	NC_002947	2086305 =	NA (NA)					coding (420/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2086250	NA (NA)	6 (0.110)	5/248	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086296	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	2086546 =	NA (NA)	4 (0.070)	3/256	NT	NA	coding (661/1302 nt)	PP_1865	transposase
	?	NC_002947	2086577 =	NA (NA)					coding (692/1302 nt)	PP_1865	transposase
*	?	NC_002947	2092875 =	37 (0.610)	6 (0.100)	5/256	NT	11.9%	coding (365/795 nt)	ygiD	4,5‑DOPA‑dioxygenase
	?	NC_002947	2092987 =	53 (0.910)					coding (253/795 nt)	ygiD	4,5‑DOPA‑dioxygenase
*	?	NC_002947	= 2105047	58 (0.960)	6 (0.100)	5/256	NT	10.3%	coding (2070/2193 nt)	PP_1880	outer membrane autotransporter
	?	NC_002947	= 2105083	48 (0.820)					coding (2034/2193 nt)	PP_1880	outer membrane autotransporter
*	?	NC_002947	= 2248228	66 (1.100)	4 (0.070)	3/254	NT	5.8%	coding (1371/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
	?	NC_002947	= 2248275	66 (1.140)					coding (1324/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
*	?	NC_002947	2301453 =	0 (0.000)	42 (0.710)	39/258	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	57 (0.960)	45/260	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	2308824 =	55 (0.910)	4 (0.070)	3/258	NT	7.0%	coding (246/957 nt)	PP_2031	hypothetical protein
	?	NC_002947	2308888 =	52 (0.880)					coding (182/957 nt)	PP_2031	hypothetical protein
*	?	NC_002947	2308907 =	54 (0.900)	4 (0.070)	4/258	NT	7.3%	coding (163/957 nt)	PP_2031	hypothetical protein
	?	NC_002947	2308955 =	49 (0.830)					coding (115/957 nt)	PP_2031	hypothetical protein
*	?	NC_002947	= 2338352	50 (0.830)	6 (0.100)	5/252	NT	10.0%	coding (145/1080 nt)	PP_2055	isomerase
	?	NC_002947	= 2338422	60 (1.040)					coding (215/1080 nt)	PP_2055	isomerase
*	?	NC_002947	2360109 =	62 (1.030)	5 (0.090)	4/254	NT	7.2%	coding (1048/1134 nt)	PP_2075	membrane protein
	?	NC_002947	= 3840158	70 (1.210)					coding (1081/1158 nt)	PP_3389	membrane protein
*	?	NC_002947	= 2366297	47 (0.780)	4 (0.070)	4/248	NT	8.9%	coding (733/906 nt)	lysR	transcriptional regulator LysR
	?	NC_002947	= 2366321	38 (0.670)					coding (757/906 nt)	lysR	transcriptional regulator LysR
*	?	NC_002947	2375858 =	54 (0.900)	3 (0.050)	3/256	NT	6.2%	coding (212/993 nt)	PP_2083	lipase
	?	NC_002947	2375894 =	39 (0.670)					coding (248/993 nt)	PP_2083	lipase
*	?	NC_002947	2385585 =	62 (1.030)	4 (0.070)	4/256	NT	6.8%	coding (293/576 nt)	PP_2093	two‑component system response regulator NasT
	?	NC_002947	2385633 =	50 (0.860)					coding (245/576 nt)	PP_2093	two‑component system response regulator NasT
*	?	NC_002947	2397599 =	38 (0.630)	5 (0.090)	5/254	NT	11.7%	coding (2058/3636 nt)	PP_2100	two‑component system sensor protein
	?	NC_002947	2397657 =	39 (0.670)					coding (2000/3636 nt)	PP_2100	two‑component system sensor protein
*	?	NC_002947	2412849 =	64 (1.060)	4 (0.070)	4/248	NT	7.0%	intergenic (+113/‑308)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
	?	NC_002947	2412942 =	46 (0.810)					intergenic (+206/‑215)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
*	?	NC_002947	2414822 =	54 (0.900)	7 (0.120)	4/248	NT	12.1%	coding (20/198 nt)	PP_2115	hypothetical protein
	?	NC_002947	2530704 =	NA (NA)					intergenic (+123/‑58)	PP_2218/PP_2219	transposase/hypothetical protein
*	?	NC_002947	2417879 =	41 (0.680)	3 (0.050)	3/254	NT	6.4%	coding (914/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein
	?	NC_002947	2417925 =	49 (0.850)					coding (960/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein
*	?	NC_002947	= 2457323	72 (1.200)	5 (0.090)	4/248	NT	6.6%	coding (394/999 nt)	PP_2150	thiamine biosynthesis lipoprotein
	?	NC_002947	= 2457369	73 (1.290)					coding (440/999 nt)	PP_2150	thiamine biosynthesis lipoprotein
*	?	NC_002947	2500051 =	47 (0.780)	6 (0.110)	5/248	NT	11.5%	coding (1952/2454 nt)	PP_2193	ferric siderophore receptor
	?	NC_002947	2500082 =	48 (0.850)					coding (1983/2454 nt)	PP_2193	ferric siderophore receptor
*	?	NC_002947	= 2530695	NA (NA)	3 (0.050)	3/248	NT	6.9%	intergenic (+114/‑67)	PP_2218/PP_2219	transposase/hypothetical protein
	?	NC_002947	4022279 =	43 (0.710)					coding (27/942 nt)	PP_3547	NAD(P)‑binding oxidoreductase
*	?	NC_002947	2536965 =	83 (1.380)	4 (0.070)	3/256	NT	5.4%	coding (2074/2916 nt)	mrpAB	K(+)/H(+) antiporter subunit A/B
	?	NC_002947	2537010 =	60 (1.030)					coding (2029/2916 nt)	mrpAB	K(+)/H(+) antiporter subunit A/B
*	?	NC_002947	= 2555646	66 (1.100)	4 (0.070)	4/256	NT	5.4%	coding (1627/1881 nt)	PP_2240	ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 2555690	76 (1.300)					coding (1671/1881 nt)	PP_2240	ABC transporter permease/ATP‑binding protein
*	?	NC_002947	= 2560802	49 (0.810)	4 (0.070)	4/250	NT	7.4%	coding (629/786 nt)	PP_2244	TauE‑like transmembrane protein
	?	NC_002947	= 2560846	53 (0.930)					coding (585/786 nt)	PP_2244	TauE‑like transmembrane protein
*	?	NC_002947	2564030 =	56 (0.930)	4 (0.070)	3/250	NT	7.2%	coding (129/1065 nt)	PP_2248	putative transporter
	?	NC_002947	2564067 =	50 (0.880)					coding (166/1065 nt)	PP_2248	putative transporter
*	?	NC_002947	2565610 =	54 (0.900)	3 (0.050)	3/258	NT	5.0%	coding (1342/1932 nt)	pctB	methyl‑accepting chemotaxis protein PctB
	?	NC_002947	2565690 =	61 (1.040)					coding (1262/1932 nt)	pctB	methyl‑accepting chemotaxis protein PctB
*	?	NC_002947	2580903 =	49 (0.810)	4 (0.070)	4/250	NT	8.2%	coding (125/867 nt)	PP_2262	sugar ABC transporter permease
	?	NC_002947	2580939 =	43 (0.750)					coding (161/867 nt)	PP_2262	sugar ABC transporter permease
*	?	NC_002947	2626960 =	73 (1.210)	4 (0.070)	4/260	NT	5.2%	coding (45/1332 nt)	tig	trigger factor
	?	NC_002947	2627013 =	73 (1.230)					coding (98/1332 nt)	tig	trigger factor
*	?	NC_002947	= 2626968	75 (1.250)	4 (0.070)	4/252	NT	5.3%	coding (53/1332 nt)	tig	trigger factor
	?	NC_002947	= 2627003	72 (1.250)					coding (88/1332 nt)	tig	trigger factor
*	?	NC_002947	2657073 =	41 (0.680)	4 (0.070)	4/252	NT	9.2%	coding (539/1341 nt)	pabB	aminodeoxychorismate synthase/para‑aminobenzoate synthase multi‑enzyme complex
	?	NC_002947	2657137 =	40 (0.700)					coding (475/1341 nt)	pabB	aminodeoxychorismate synthase/para‑aminobenzoate synthase multi‑enzyme complex
*	?	NC_002947	= 2686299	45 (0.750)	3 (0.050)	3/252	NT	6.8%	coding (1423/2388 nt)	PP_2354	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 2686323	39 (0.680)					coding (1399/2388 nt)	PP_2354	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	2697776 =	39 (0.650)	4 (0.070)	4/252	NT	10.0%	coding (521/1149 nt)	PP_2364	hypothetical protein
	?	NC_002947	2697837 =	35 (0.610)					coding (460/1149 nt)	PP_2364	hypothetical protein
*	?	NC_002947	2729599 =	47 (0.780)	3 (0.050)	3/248	NT	6.4%	coding (46/1044 nt)	PP_2392	MFS transporter
	?	NC_002947	2729650 =	43 (0.760)					coding (97/1044 nt)	PP_2392	MFS transporter
*	?	NC_002947	= 2744589	44 (0.730)	3 (0.050)	3/252	NT	6.3%	coding (128/696 nt)	PP_2399	hypothetical protein
	?	NC_002947	= 2744625	47 (0.820)					coding (164/696 nt)	PP_2399	hypothetical protein
*	?	NC_002947	2777954 =	47 (0.780)	3 (0.050)	3/252	NT	6.0%	coding (432/831 nt)	PP_2430	AraC family transcriptional regulator
	?	NC_002947	2777997 =	49 (0.850)					coding (389/831 nt)	PP_2430	AraC family transcriptional regulator
*	?	NC_002947	2822859 =	65 (1.080)	4 (0.070)	4/252	NT	6.5%	coding (432/1035 nt)	curA	NADPH‑dependent curcumin/dihydrocurcumin reductase
	?	NC_002947	2822903 =	53 (0.920)					coding (476/1035 nt)	curA	NADPH‑dependent curcumin/dihydrocurcumin reductase
*	?	NC_002947	= 2912027	50 (0.830)	3 (0.050)	3/256	NT	5.1%	coding (1047/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
	?	NC_002947	= 2912060	63 (1.080)					coding (1080/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
*	?	NC_002947	2915278 =	49 (0.810)	3 (0.050)	3/248	NT	7.0%	coding (4298/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
	?	NC_002947	2915368 =	34 (0.600)					coding (4388/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
*	?	NC_002947	= 2922971	46 (0.760)	5 (0.090)	5/248	NT	10.1%	coding (2282/2772 nt)	PP_2563	antibiotic biosynthesis protein
	?	NC_002947	= 2923001	46 (0.810)					coding (2252/2772 nt)	PP_2563	antibiotic biosynthesis protein
*	?	NC_002947	= 2923293	36 (0.600)	3 (0.050)	3/248	NT	7.7%	coding (1960/2772 nt)	PP_2563	antibiotic biosynthesis protein
	?	NC_002947	= 2923329	38 (0.670)					coding (1924/2772 nt)	PP_2563	antibiotic biosynthesis protein
*	?	NC_002947	2928415 =	34 (0.560)	4 (0.070)	4/252	NT	11.9%	coding (1682/2472 nt)	PP_2565	UvrD/REP family helicase
	?	NC_002947	2928448 =	27 (0.470)					coding (1715/2472 nt)	PP_2565	UvrD/REP family helicase
*	?	NC_002947	2945472 =	36 (0.600)	4 (0.070)	3/248	NT	8.7%	coding (249/531 nt)	PP_2578	hypothetical protein
	?	NC_002947	2945533 =	50 (0.880)					coding (310/531 nt)	PP_2578	hypothetical protein
*	?	NC_002947	= 3013407	53 (0.880)	4 (0.070)	4/248	NT	7.4%	coding (643/708 nt)	PP_2634	cellulose synthase
	?	NC_002947	= 3013439	50 (0.880)					coding (675/708 nt)	PP_2634	cellulose synthase
*	?	NC_002947	= 3015001	34 (0.560)	3 (0.050)	3/248	NT	8.5%	coding (1533/2610 nt)	bcsA	cellulose synthase and translocator subunit
	?	NC_002947	= 3015025	33 (0.580)					coding (1557/2610 nt)	bcsA	cellulose synthase and translocator subunit
*	?	NC_002947	3026575 =	47 (0.780)	3 (0.050)	3/246	NT	7.1%	coding (61/1800 nt)	PP_2641	iron‑sulfur cluster‑binding protein
	?	NC_002947	3026620 =	35 (0.620)					coding (16/1800 nt)	PP_2641	iron‑sulfur cluster‑binding protein
*	?	NC_002947	= 3050490	56 (0.930)	3 (0.050)	3/254	NT	5.3%	coding (322/1164 nt)	PP_2663	hypothetical protein
	?	NC_002947	= 3050517	53 (0.910)					coding (349/1164 nt)	PP_2663	hypothetical protein
*	?	NC_002947	= 3063923	43 (0.710)	4 (0.070)	4/252	NT	9.2%	coding (208/462 nt)	PP_2675	cytochrome c‑type protein
	?	NC_002947	= 3063938	38 (0.660)					coding (223/462 nt)	PP_2675	cytochrome c‑type protein
*	?	NC_002947	3075535 =	58 (0.960)	3 (0.050)	3/254	NT	5.4%	coding (518/723 nt)	PP_2685	hypothetical protein
	?	NC_002947	3075568 =	50 (0.860)					coding (485/723 nt)	PP_2685	hypothetical protein
*	?	NC_002947	= 3098359	46 (0.760)	3 (0.050)	3/252	NT	6.4%	coding (723/798 nt)	PP_2707	exodeoxyribonuclease III
	?	NC_002947	= 3098385	44 (0.770)					coding (749/798 nt)	PP_2707	exodeoxyribonuclease III
*	?	NC_002947	= 3126473	48 (0.800)	4 (0.070)	4/254	NT	8.9%	coding (952/960 nt)	PP_2744	ribose‑phosphate pyrophosphokinase family protein
	?	NC_002947	= 3126509	36 (0.620)					coding (916/960 nt)	PP_2744	ribose‑phosphate pyrophosphokinase family protein
*	?	NC_002947	= 3168508	37 (0.610)	3 (0.050)	3/252	NT	7.6%	coding (403/2880 nt)	PP_2782	class III pyridoxalphosphate dependent aminotransferase
	?	NC_002947	= 3168531	38 (0.660)					coding (426/2880 nt)	PP_2782	class III pyridoxalphosphate dependent aminotransferase
*	?	NC_002947	3224865 =	47 (0.780)	3 (0.050)	3/250	NT	7.2%	coding (554/915 nt)	mexT	transcriptional regulator MexT
	?	NC_002947	3224942 =	33 (0.580)					coding (477/915 nt)	mexT	transcriptional regulator MexT
*	?	NC_002947	= 3265802	46 (0.760)	4 (0.070)	4/244	NT	8.4%	coding (97/378 nt)	PP_2863	membrane protein
	?	NC_002947	= 3265877	45 (0.810)					coding (172/378 nt)	PP_2863	membrane protein
*	?	NC_002947	3290190 =	47 (0.780)	5 (0.090)	3/254	NT	10.3%	coding (1222/1752 nt)	PP_2892	hypothetical protein
	?	NC_002947	3290226 =	42 (0.730)					coding (1258/1752 nt)	PP_2892	hypothetical protein
*	?	NC_002947	3310418 =	62 (1.030)	3 (0.050)	3/254	NT	5.4%	coding (132/1392 nt)	gabP‑III	gamma‑aminobutyrate permease
	?	NC_002947	3310458 =	46 (0.790)					coding (172/1392 nt)	gabP‑III	gamma‑aminobutyrate permease
*	?	NC_002947	= 3320238	37 (0.610)	3 (0.050)	3/246	NT	7.4%	intergenic (‑93/‑28)	PP_2919/ybgL	LysR family transcriptional regulator/nitrogen‑containing compound degradation protein
	?	NC_002947	= 3320264	41 (0.730)					intergenic (‑119/‑2)	PP_2919/ybgL	LysR family transcriptional regulator/nitrogen‑containing compound degradation protein
*	?	NC_002947	3323260 =	52 (0.860)	3 (0.050)	3/252	NT	5.7%	coding (633/858 nt)	PP_2923	hypothetical protein
	?	NC_002947	3323298 =	49 (0.850)					coding (595/858 nt)	PP_2923	hypothetical protein
*	?	NC_002947	3366553 =	51 (0.850)	66 (1.100)	53/262	NT	72.3%	intergenic (+219/‑142)	PP_2962/PP_2964	alcohol dehydrogenase/transposase
	?	NC_002947	4962734 =	0 (0.000)					coding (921/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
*	?	NC_002947	= 3383566	54 (0.900)	54 (0.900)	47/262	NT	66.8%	coding (500/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 4962737	0 (0.000)					coding (918/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
*	?	NC_002947	= 3394199	55 (0.910)	4 (0.070)	4/256	NT	6.3%	coding (208/900 nt)	PP_2997	protein CnmA
	?	NC_002947	= 3394244	65 (1.110)					coding (163/900 nt)	PP_2997	protein CnmA
*	?	NC_002947	= 3398681	70 (1.160)	4 (0.070)	4/256	NT	5.2%	coding (339/438 nt)	aroQ‑III	type II 3‑dehydroquinate dehydratase
	?	NC_002947	= 3398709	77 (1.320)					coding (367/438 nt)	aroQ‑III	type II 3‑dehydroquinate dehydratase
*	?	NC_002947	= 3434868	71 (1.180)	4 (0.070)	4/250	NT	5.9%	coding (103/327 nt)	gpW	baseplate protein
	?	NC_002947	= 3434892	60 (1.050)					coding (127/327 nt)	gpW	baseplate protein
*	?	NC_002947	= 3446468	59 (0.980)	4 (0.070)	4/252	NT	6.8%	coding (862/1044 nt)	gpD	tail formation
	?	NC_002947	= 3446522	53 (0.920)					coding (916/1044 nt)	gpD	tail formation
*	?	NC_002947	3473670 =	61 (1.010)	3 (0.050)	3/252	NT	5.2%	coding (438/507 nt)	PP_3086	RNA polymerase sigma‑70 factor
	?	NC_002947	3473712 =	51 (0.890)					coding (396/507 nt)	PP_3086	RNA polymerase sigma‑70 factor
*	?	NC_002947	3497012 =	57 (0.950)	3 (0.050)	3/252	NT	5.1%	coding (585/765 nt)	PP_5562	hypothetical protein
	?	NC_002947	3497088 =	57 (0.990)					coding (509/765 nt)	PP_5562	hypothetical protein
*	?	NC_002947	= 3523943	NA (NA)	3 (0.050)	3/252	NT	NA	coding (656/1533 nt)	PP_3114	transposase
	?	NC_002947	= 3523969	NA (NA)					coding (682/1533 nt)	PP_3114	transposase
*	?	NC_002947	= 3554936	75 (1.250)	4 (0.070)	3/250	NT	5.1%	coding (552/1203 nt)	PP_3139	group 1 family glycosyl transferase
	?	NC_002947	= 3554957	78 (1.370)					coding (573/1203 nt)	PP_3139	group 1 family glycosyl transferase
*	?	NC_002947	3555711 =	46 (0.760)	3 (0.050)	3/252	NT	6.5%	coding (128/1188 nt)	PP_3140	group 2 family glycosyl transferase
	?	NC_002947	3555757 =	43 (0.750)					coding (174/1188 nt)	PP_3140	group 2 family glycosyl transferase
*	?	NC_002947	= 3587081	59 (0.980)	4 (0.070)	4/256	NT	6.7%	coding (1275/1329 nt)	benK	benzoate MFS transporter
	?	NC_002947	= 3587128	55 (0.940)					coding (1322/1329 nt)	benK	benzoate MFS transporter
*	?	NC_002947	= 3596506	34 (0.560)	3 (0.050)	3/254	NT	7.5%	coding (500/1098 nt)	nemA	FMN‑linked N‑ethylmaleimide reductase
	?	NC_002947	= 3596535	41 (0.710)					coding (471/1098 nt)	nemA	FMN‑linked N‑ethylmaleimide reductase
*	?	NC_002947	= 3601262	49 (0.810)	3 (0.050)	3/252	NT	5.6%	intergenic (‑70/‑22)	PP_3176/PP_3177	MFS transporter/hypothetical protein
	?	NC_002947	= 3601318	55 (0.960)					coding (35/1170 nt)	PP_3177	hypothetical protein
*	?	NC_002947	= 3604549	57 (0.950)	4 (0.070)	4/252	NT	6.9%	coding (105/900 nt)	PP_3179	LysR family transcriptional regulator
	?	NC_002947	= 3604617	54 (0.940)					coding (37/900 nt)	PP_3179	LysR family transcriptional regulator
*	?	NC_002947	3613444 =	41 (0.680)	3 (0.050)	3/256	NT	7.5%	coding (240/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3613484 =	34 (0.580)					coding (200/3396 nt)	mcoA	Mn(II) copper oxidase A
*	?	NC_002947	= 3702504	52 (0.860)	5 (0.090)	5/252	NT	8.6%	coding (64/399 nt)	PP_3268	MutT/nudix family protein
	?	NC_002947	= 3702539	56 (0.970)					coding (29/399 nt)	PP_3268	MutT/nudix family protein
*	?	NC_002947	3711571 =	45 (0.750)	4 (0.070)	4/244	NT	8.5%	coding (120/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
	?	NC_002947	3711634 =	44 (0.790)					coding (57/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
*	?	NC_002947	= 3797797	75 (1.250)	5 (0.090)	4/252	NT	6.4%	coding (197/1449 nt)	vdh	vanillin dehydrogenase
	?	NC_002947	= 3797886	74 (1.290)					coding (108/1449 nt)	vdh	vanillin dehydrogenase
*	?	NC_002947	= 3825995	61 (1.010)	4 (0.070)	4/250	NT	6.1%	coding (51/1020 nt)	ptxS	2‑ketogluconate utilization repressor
	?	NC_002947	= 3826031	65 (1.140)					coding (15/1020 nt)	ptxS	2‑ketogluconate utilization repressor
*	?	NC_002947	= 3837200	66 (1.100)	4 (0.070)	4/250	NT	5.5%	coding (795/2673 nt)	PP_3388	hypothetical protein
	?	NC_002947	= 3837224	75 (1.320)					coding (819/2673 nt)	PP_3388	hypothetical protein
*	?	NC_002947	= 3837888	NA (NA)	4 (0.070)	4/256	NT	6.6%	coding (1483/2673 nt)	PP_3388	hypothetical protein
	?	NC_002947	= 3837960	58 (0.960)					coding (1555/2673 nt)	PP_3388	hypothetical protein
*	?	NC_002947	= 3857595	66 (1.100)	4 (0.070)	4/254	NT	5.5%	coding (173/231 nt) noncoding (53/224 nt)	PP_3407 PP_mr41	hypothetical protein Cobalamin regulatory region
	?	NC_002947	= 3857629	73 (1.260)					coding (207/231 nt) noncoding (87/224 nt)	PP_3407 PP_mr41	hypothetical protein Cobalamin regulatory region
*	?	NC_002947	3916974 =	63 (1.050)	4 (0.070)	4/248	NT	6.1%	coding (756/3129 nt)	mexB	multidrug resistance protein MexB
	?	NC_002947	3917021 =	64 (1.130)					coding (803/3129 nt)	mexB	multidrug resistance protein MexB
*	?	NC_002947	= 3933865	68 (1.130)	4 (0.070)	4/256	NT	5.9%	coding (1548/1911 nt)	PP_3467	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 3933896	61 (1.040)					coding (1517/1911 nt)	PP_3467	sigma‑54 dependent transcriptional regulator
*	?	NC_002947	3969585 =	NA (NA)	5 (0.090)	5/250	NT	NA	coding (220/321 nt)	PP_3499	transposase
	?	NC_002947	3969623 =	NA (NA)					coding (258/321 nt)	PP_3499	transposase
*	?	NC_002947	4023722 =	38 (0.630)	4 (0.070)	4/254	NT	9.5%	coding (787/1536 nt)	emrB	multidrug transporter permease
	?	NC_002947	4023746 =	40 (0.690)					coding (763/1536 nt)	emrB	multidrug transporter permease
*	?	NC_002947	= 4054544	48 (0.800)	4 (0.070)	4/252	NT	7.0%	coding (1118/1320 nt)	PP_3573	monooxygenase
	?	NC_002947	= 4054584	61 (1.060)					coding (1158/1320 nt)	PP_3573	monooxygenase
*	?	NC_002947	= 4057616	59 (0.980)	5 (0.080)	3/258	NT	7.8%	coding (46/2406 nt)	PP_3575	ferric siderophore receptor
	?	NC_002947	= 4057640	61 (1.040)					coding (22/2406 nt)	PP_3575	ferric siderophore receptor
*	?	NC_002947	= 4065591	53 (0.880)	4 (0.070)	4/256	NT	6.4%	coding (369/1491 nt)	PP_3582	RND transporter outer membrane protein
	?	NC_002947	= 4065640	66 (1.130)					coding (320/1491 nt)	PP_3582	RND transporter outer membrane protein
*	?	NC_002947	= 4093391	56 (0.930)	4 (0.070)	4/254	NT	7.9%	coding (388/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase
	?	NC_002947	= 4093458	40 (0.690)					coding (455/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase
*	?	NC_002947	4095078 =	47 (0.780)	6 (0.100)	4/254	NT	11.9%	coding (406/765 nt)	PP_3603	GntR family transcriptional regulator
	?	NC_002947	4095123 =	44 (0.760)					coding (361/765 nt)	PP_3603	GntR family transcriptional regulator
*	?	NC_002947	= 4096079	56 (0.930)	3 (0.050)	3/250	NT	5.2%	coding (411/651 nt)	PP_5607	membrane protein
	?	NC_002947	= 4096123	57 (1.000)					coding (455/651 nt)	PP_5607	membrane protein
*	?	NC_002947	4099369 =	53 (0.880)	4 (0.070)	4/252	NT	7.9%	coding (649/1215 nt)	PP_3607	membrane protein
	?	NC_002947	4099406 =	43 (0.750)					coding (612/1215 nt)	PP_3607	membrane protein
*	?	NC_002947	= 4099786	59 (0.980)	3 (0.050)	3/258	NT	5.1%	coding (232/1215 nt)	PP_3607	membrane protein
	?	NC_002947	= 4099874	53 (0.900)					coding (144/1215 nt)	PP_3607	membrane protein
*	?	NC_002947	4128664 =	65 (1.080)	4 (0.070)	4/252	NT	6.5%	coding (564/879 nt)	PP_3632	LysR family transcriptional regulator
	?	NC_002947	4128697 =	53 (0.920)					coding (531/879 nt)	PP_3632	LysR family transcriptional regulator
*	?	NC_002947	= 4135852	56 (0.930)	4 (0.070)	3/246	NT	6.7%	coding (61/921 nt)	PP_3640	AraC family transcriptional regulator
	?	NC_002947	= 4135878	59 (1.050)					coding (87/921 nt)	PP_3640	AraC family transcriptional regulator
*	?	NC_002947	4140591 =	53 (0.880)	6 (0.110)	4/244	NT	11.1%	coding (219/597 nt)	PP_5609	hypothetical protein
	?	NC_002947	4140641 =	47 (0.840)					coding (269/597 nt)	PP_5609	hypothetical protein
*	?	NC_002947	4145658 =	65 (1.080)	4 (0.070)	4/250	NT	6.4%	coding (456/564 nt)	atnUDX	NUDIX hydrolase
	?	NC_002947	4145710 =	56 (0.980)					coding (508/564 nt)	atnUDX	NUDIX hydrolase
*	?	NC_002947	= 4165585	61 (1.010)	8 (0.140)	7/254	NT	12.3%	coding (517/1335 nt)	PP_3666	MHS family metabolite MFS transporter
	?	NC_002947	= 4165655	55 (0.950)					coding (447/1335 nt)	PP_3666	MHS family metabolite MFS transporter
*	?	NC_002947	= 4207068	58 (0.960)	3 (0.050)	3/252	NT	5.0%	coding (708/6624 nt)	PP_3691	DNA helicase‑related protein
	?	NC_002947	= 4207093	58 (1.010)					coding (683/6624 nt)	PP_3691	DNA helicase‑related protein
*	?	NC_002947	= 4218416	39 (0.650)	4 (0.070)	4/250	NT	10.4%	coding (881/1500 nt)	PP_3698	hypothetical protein
	?	NC_002947	= 4218439	32 (0.560)					coding (858/1500 nt)	PP_3698	hypothetical protein
*	?	NC_002947	4281528 =	52 (0.860)	3 (0.050)	3/250	NT	5.9%	intergenic (‑105/+613)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator
	?	NC_002947	4281574 =	46 (0.810)					intergenic (‑151/+567)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator
*	?	NC_002947	4308293 =	36 (0.600)	3 (0.050)	3/256	NT	7.1%	intergenic (‑46/‑302)	PP_3780/PP_3781	hypothetical protein/oxygen‑independent coproporphyrinogen III oxidase family protein
	?	NC_002947	4308337 =	44 (0.750)					intergenic (‑90/‑258)	PP_3780/PP_3781	hypothetical protein/oxygen‑independent coproporphyrinogen III oxidase family protein
*	?	NC_002947	4339694 =	55 (0.910)	3 (0.050)	3/254	NT	5.5%	coding (801/1122 nt)	ribAB‑II	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
	?	NC_002947	4339728 =	51 (0.880)					coding (835/1122 nt)	ribAB‑II	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
*	?	NC_002947	= 4354628	42 (0.700)	3 (0.050)	3/248	NT	6.6%	coding (586/759 nt)	modA	molybdate‑binding protein
	?	NC_002947	= 4354655	45 (0.800)					coding (613/759 nt)	modA	molybdate‑binding protein
*	?	NC_002947	4389430 =	32 (0.530)	6 (0.100)	6/256	NT	16.0%	coding (1311/1956 nt)	PP_3865	tail protein
	?	NC_002947	4389463 =	32 (0.550)					coding (1278/1956 nt)	PP_3865	tail protein
*	?	NC_002947	= 4420490	54 (0.900)	4 (0.070)	4/242	NT	7.1%	coding (240/1662 nt)	PP_3912	DNA‑cytosine methyltransferase
	?	NC_002947	= 4420508	55 (1.000)					coding (258/1662 nt)	PP_3912	DNA‑cytosine methyltransferase
*	?	NC_002947	4429562 =	46 (0.760)	3 (0.050)	3/248	NT	6.3%	coding (600/711 nt)	PP_3923	phosphoglycerate mutase
	?	NC_002947	4429602 =	46 (0.810)					coding (640/711 nt)	PP_3923	phosphoglycerate mutase
*	?	NC_002947	4453361 =	57 (0.950)	3 (0.050)	3/250	NT	5.6%	coding (2965/3564 nt)	nicB	nicotinate dehydrogenase subunit B
	?	NC_002947	4453411 =	47 (0.820)					coding (3015/3564 nt)	nicB	nicotinate dehydrogenase subunit B
*	?	NC_002947	= 4510837	53 (0.880)	5 (0.090)	4/250	NT	8.6%	coding (952/1326 nt)	rarA	DNA‑dependent ATPase
	?	NC_002947	= 4510858	56 (0.980)					coding (931/1326 nt)	rarA	DNA‑dependent ATPase
*	?	NC_002947	4515693 =	77 (1.280)	4 (0.070)	3/256	NT	5.4%	coding (295/681 nt)	aat	leucyl/phenylalanyl‑tRNA‑‑protein transferase
	?	NC_002947	4515729 =	66 (1.130)					coding (331/681 nt)	aat	leucyl/phenylalanyl‑tRNA‑‑protein transferase
*	?	NC_002947	= 4525157	54 (0.900)	4 (0.070)	3/246	NT	6.7%	coding (88/1125 nt)	mnmA	tRNA 2‑thiouridine(34) synthase MnmA
	?	NC_002947	= 4525183	61 (1.090)					coding (114/1125 nt)	mnmA	tRNA 2‑thiouridine(34) synthase MnmA
*	?	NC_002947	4537549 =	NA (NA)	15 (0.260)	6/254	NT	69.0%	coding (884/1533 nt)	PP_4025	transposase
	?	NC_002947	= 4626656	7 (0.120)					coding (848/1533 nt)	PP_4091	transposase
*	?	NC_002947	4546234 =	59 (0.980)	4 (0.070)	4/250	NT	6.6%	coding (1112/1491 nt)	pydP	NCS1 family transporter PydP
	?	NC_002947	4546306 =	57 (1.000)					coding (1040/1491 nt)	pydP	NCS1 family transporter PydP
*	?	NC_002947	= 4583494	33 (0.550)	5 (0.100)	5/224	NT	17.2%	intergenic (‑67/+104)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4583555	20 (0.390)					intergenic (‑128/+43)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
*	?	NC_002947	4586807 =	64 (1.060)	4 (0.070)	4/250	NT	6.0%	coding (1008/1683 nt)	PP_4063	long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586842 =	64 (1.120)					coding (973/1683 nt)	PP_4063	long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	= 4633001	49 (0.810)	3 (0.050)	3/256	NT	5.7%	coding (253/561 nt)	pgsA	CDP‑diacylglycerol‑glycerol‑3‑phosphate 3‑phosphatidyltransferase
	?	NC_002947	= 4633026	51 (0.870)					coding (228/561 nt)	pgsA	CDP‑diacylglycerol‑glycerol‑3‑phosphate 3‑phosphatidyltransferase
*	?	NC_002947	= 4644814	52 (0.860)	3 (0.050)	3/256	NT	5.9%	intergenic (‑124/‑66)	PP_4109/PP_5658	hypothetical protein/hypothetical protein
	?	NC_002947	= 4644882	45 (0.770)					coding (3/483 nt)	PP_5658	hypothetical protein
*	?	NC_002947	4657232 =	56 (0.930)	6 (0.100)	5/254	NT	10.1%	coding (625/678 nt)	nuoB	NADH‑quinone oxidoreductase subunit B
	?	NC_002947	4657278 =	53 (0.910)					coding (671/678 nt)	nuoB	NADH‑quinone oxidoreductase subunit B
*	?	NC_002947	= 4659716	87 (1.440)	4 (0.070)	4/252	NT	5.0%	coding (74/1362 nt)	nuoF	NADH‑quinone oxidoreductase subunit F
	?	NC_002947	= 4659784	68 (1.180)					coding (142/1362 nt)	nuoF	NADH‑quinone oxidoreductase subunit F
*	?	NC_002947	= 4679619	39 (0.650)	4 (0.070)	4/248	NT	9.3%	coding (338/447 nt)	rnhA	ribonuclease H
	?	NC_002947	= 4679643	41 (0.720)					coding (314/447 nt)	rnhA	ribonuclease H
*	?	NC_002947	4701334 =	64 (1.060)	3 (0.050)	3/252	NT	5.2%	coding (61/558 nt)	kdpC	potassium‑transporting ATPase subunit C
	?	NC_002947	4701380 =	49 (0.850)					coding (15/558 nt)	kdpC	potassium‑transporting ATPase subunit C
*	?	NC_002947	= 4713629	47 (0.780)	4 (0.070)	4/250	NT	8.6%	coding (1861/2115 nt)	PP_4171	hypothetical protein
	?	NC_002947	= 4713674	40 (0.700)					coding (1906/2115 nt)	PP_4171	hypothetical protein
*	?	NC_002947	= 4724051	56 (0.930)	3 (0.050)	3/248	NT	5.5%	coding (65/483 nt)	yigI	hypothetical protein
	?	NC_002947	= 4724089	50 (0.880)					coding (27/483 nt)	yigI	hypothetical protein
*	?	NC_002947	4733550 =	71 (1.180)	6 (0.110)	5/250	NT	8.0%	coding (2085/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
	?	NC_002947	4733587 =	70 (1.230)					coding (2048/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
*	?	NC_002947	4738166 =	60 (1.000)	3 (0.050)	3/252	NT	5.2%	coding (204/1773 nt)	sdhA	succinate dehydrogenase flavoprotein subunit
	?	NC_002947	4738204 =	52 (0.900)					coding (166/1773 nt)	sdhA	succinate dehydrogenase flavoprotein subunit
*	?	NC_002947	= 4747524	67 (1.110)	4 (0.070)	4/252	NT	5.7%	coding (238/750 nt)	etfB	electron transfer flavoprotein subunit beta
	?	NC_002947	= 4747569	69 (1.200)					coding (193/750 nt)	etfB	electron transfer flavoprotein subunit beta
*	?	NC_002947	= 4768559	44 (0.730)	3 (0.050)	3/252	NT	6.6%	coding (253/957 nt)	PP_4218	lipase/esterase family protein
	?	NC_002947	= 4768582	43 (0.750)					coding (230/957 nt)	PP_4218	lipase/esterase family protein
*	?	NC_002947	= 4774255	54 (0.900)	6 (0.100)	5/254	NT	11.0%	coding (5012/10413 nt)	pvdD	non‑ribosomal peptide synthetase
	?	NC_002947	= 4774300	45 (0.780)					coding (4967/10413 nt)	pvdD	non‑ribosomal peptide synthetase
*	?	NC_002947	4788966 =	60 (1.000)	3 (0.050)	3/252	NT	5.3%	coding (4874/6525 nt)	pvdI	non‑ribosomal peptide synthetase
	?	NC_002947	4789057 =	51 (0.890)					coding (4783/6525 nt)	pvdI	non‑ribosomal peptide synthetase
*	?	NC_002947	4806771 =	40 (0.660)	4 (0.070)	4/250	NT	9.0%	coding (1121/2832 nt)	PP_4234	bifunctional aldehyde oxidase/xanthine dehydrogenase
	?	NC_002947	4806853 =	43 (0.750)					coding (1039/2832 nt)	PP_4234	bifunctional aldehyde oxidase/xanthine dehydrogenase
*	?	NC_002947	4808174 =	1 (0.020)	21 (0.470)	17/194	NT	63.9%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	23 (0.520)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4808179	1 (0.020)	28 (0.510)	24/240	NT	45.9%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	65 (1.190)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4814531 =	60 (1.000)	5 (0.090)	5/248	NT	9.0%	coding (99/1203 nt)	PP_4240	microcin B17 processing protein McbD
	?	NC_002947	4814567 =	45 (0.800)					coding (135/1203 nt)	PP_4240	microcin B17 processing protein McbD
*	?	NC_002947	= 4840482	47 (0.780)	3 (0.050)	3/252	NT	5.9%	coding (848/1443 nt)	ccoN‑II	cbb3‑type cytochrome c oxidase subunit 1
	?	NC_002947	= 4840522	50 (0.870)					coding (888/1443 nt)	ccoN‑II	cbb3‑type cytochrome c oxidase subunit 1
*	?	NC_002947	4856096 =	59 (0.980)	11 (0.200)	9/236	NT	18.5%	intergenic (+68/+128)	PP_4270/PP_5670	hypothetical protein/hypothetical protein
	?	NC_002947	4856183 =	44 (0.820)					intergenic (+155/+41)	PP_4270/PP_5670	hypothetical protein/hypothetical protein
*	?	NC_002947	= 4893579	23 (0.380)	5 (0.100)	3/210	NT	18.8%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4893604	25 (0.520)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	4950413 =	43 (0.710)	4 (0.070)	4/248	NT	9.4%	coding (438/498 nt)	fliL	flagellar protein FliL
	?	NC_002947	4950455 =	37 (0.650)					coding (396/498 nt)	fliL	flagellar protein FliL
*	?	NC_002947	= 4990473	54 (0.900)	5 (0.090)	5/250	NT	8.4%	coding (659/1242 nt)	PP_4399	glutamine synthetase
	?	NC_002947	= 4990503	58 (1.020)					coding (629/1242 nt)	PP_4399	glutamine synthetase
*	?	NC_002947	4995646 =	57 (0.950)	5 (0.090)	4/254	NT	8.6%	coding (36/1380 nt)	lpdV	branched‑chain alpha‑keto acid dehydrogenase complex dihydrolipoyl dehydrogenase
	?	NC_002947	4995687 =	52 (0.900)					coding (77/1380 nt)	lpdV	branched‑chain alpha‑keto acid dehydrogenase complex dihydrolipoyl dehydrogenase
*	?	NC_002947	5004605 =	52 (0.860)	3 (0.050)	3/248	NT	6.1%	coding (957/3300 nt)	PP_4410	hypothetical protein
	?	NC_002947	5004651 =	44 (0.780)					coding (1003/3300 nt)	PP_4410	hypothetical protein
*	?	NC_002947	5023850 =	70 (1.160)	4 (0.070)	3/248	NT	5.8%	coding (86/855 nt)	PP_4428	amino acid ABC transporter substrate‑binding protein
	?	NC_002947	5023888 =	63 (1.110)					coding (48/855 nt)	PP_4428	amino acid ABC transporter substrate‑binding protein
*	?	NC_002947	5025847 =	54 (0.900)	3 (0.050)	3/250	NT	5.5%	coding (161/993 nt)	PP_4430	threonine dehydratase
	?	NC_002947	5025887 =	51 (0.890)					coding (201/993 nt)	PP_4430	threonine dehydratase
*	?	NC_002947	5061127 =	62 (1.030)	3 (0.050)	3/254	NT	5.2%	intergenic (‑294/‑197)	PP_4458/PP_4459	opine ABC transporter substrate‑binding protein/transposase
	?	NC_002947	5061161 =	49 (0.850)					intergenic (‑328/‑163)	PP_4458/PP_4459	opine ABC transporter substrate‑binding protein/transposase
*	?	NC_002947	5090492 =	85 (1.410)	5 (0.090)	4/250	NT	6.1%	coding (445/1020 nt)	astA‑II	arginine N‑succinyltransferase subunit alpha
	?	NC_002947	5090540 =	73 (1.280)					coding (397/1020 nt)	astA‑II	arginine N‑succinyltransferase subunit alpha
*	?	NC_002947	5115116 =	55 (0.910)	4 (0.070)	4/254	NT	6.6%	coding (670/861 nt)	PP_4500	TrpH family protein
	?	NC_002947	5115188 =	60 (1.040)					coding (598/861 nt)	PP_4500	TrpH family protein
*	?	NC_002947	5118906 =	65 (1.080)	4 (0.070)	4/252	NT	6.0%	coding (680/1341 nt)	PP_4505	sensor histidine kinase
	?	NC_002947	5118969 =	64 (1.110)					coding (743/1341 nt)	PP_4505	sensor histidine kinase
*	?	NC_002947	5133434 =	74 (1.230)	4 (0.070)	4/256	NT	5.5%	coding (516/1359 nt)	tolC	agglutination protein
	?	NC_002947	5133494 =	67 (1.150)					coding (576/1359 nt)	tolC	agglutination protein
*	?	NC_002947	= 5140834	53 (0.880)	5 (0.090)	4/252	NT	8.4%	coding (728/894 nt)	PP_4525	LysR family transcriptional regulator
	?	NC_002947	= 5140853	59 (1.030)					coding (709/894 nt)	PP_4525	LysR family transcriptional regulator
*	?	NC_002947	5147701 =	NA (NA)	4 (0.070)	4/250	NT	19.9%	coding (806/1302 nt)	mscMB	miniconductance mechanosensitive channel protein
	?	NC_002947	5147725 =	17 (0.280)					coding (830/1302 nt)	mscMB	miniconductance mechanosensitive channel protein
*	?	NC_002947	5160379 =	57 (0.950)	3 (0.050)	3/248	NT	6.1%	coding (676/1212 nt)	PP_4543	hypothetical protein
	?	NC_002947	5160418 =	39 (0.690)					coding (637/1212 nt)	PP_4543	hypothetical protein
*	?	NC_002947	= 5207127	49 (0.810)	4 (0.070)	4/254	NT	7.7%	coding (59/594 nt)	PP_4588	nitroreductase family oxidoreductase
	?	NC_002947	= 5207157	49 (0.850)					coding (89/594 nt)	PP_4588	nitroreductase family oxidoreductase
*	?	NC_002947	= 5261211	65 (1.080)	4 (0.070)	4/248	NT	6.1%	coding (390/825 nt)	PP_4637	5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase family protein
	?	NC_002947	= 5261242	63 (1.110)					coding (359/825 nt)	PP_4637	5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase family protein
*	?	NC_002947	= 5288423	20 (0.330)	4 (0.090)	4/204	NT	14.4%	intergenic (‑104/+80)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	= 5288457	32 (0.690)					intergenic (‑138/+46)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	5291126 =	46 (0.760)	4 (0.070)	4/256	NT	8.2%	coding (724/882 nt)	PP_4664	LysR family transcriptional regulator
	?	NC_002947	5291174 =	45 (0.770)					coding (772/882 nt)	PP_4664	LysR family transcriptional regulator
*	?	NC_002947	5296388 =	69 (1.150)	4 (0.070)	4/250	NT	5.7%	coding (975/1272 nt)	TpbB	diguanylate cyclase
	?	NC_002947	5296425 =	68 (1.190)					coding (938/1272 nt)	TpbB	diguanylate cyclase
*	?	NC_002947	5299515 =	64 (1.060)	6 (0.100)	6/258	NT	8.0%	coding (587/2076 nt)	recD	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
	?	NC_002947	5299614 =	76 (1.290)					coding (488/2076 nt)	recD	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
*	?	NC_002947	= 5304887	91 (1.510)	5 (0.090)	4/250	NT	5.3%	coding (2365/3483 nt)	recC	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
	?	NC_002947	= 5304970	91 (1.600)					coding (2282/3483 nt)	recC	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
*	?	NC_002947	= 5331917	79 (1.310)	5 (0.090)	5/252	NT	6.0%	coding (147/447 nt)	dksA	RNA polymerase‑binding transcription factor DksA
	?	NC_002947	= 5331935	80 (1.390)					coding (165/447 nt)	dksA	RNA polymerase‑binding transcription factor DksA
*	?	NC_002947	5337085 =	71 (1.180)	6 (0.110)	6/250	NT	8.3%	coding (535/1443 nt)	PP_4696	nitrogen regulation protein NR(I)
	?	NC_002947	5337130 =	66 (1.160)					coding (580/1443 nt)	PP_4696	nitrogen regulation protein NR(I)
*	?	NC_002947	= 5337341	80 (1.330)	8 (0.140)	7/250	NT	10.3%	coding (791/1443 nt)	PP_4696	nitrogen regulation protein NR(I)
	?	NC_002947	= 5337359	63 (1.100)					coding (809/1443 nt)	PP_4696	nitrogen regulation protein NR(I)
*	?	NC_002947	5341916 =	60 (1.000)	3 (0.050)	3/250	NT	5.0%	coding (226/864 nt)	panC	pantothenate synthetase
	?	NC_002947	5341952 =	56 (0.980)					coding (262/864 nt)	panC	pantothenate synthetase
*	?	NC_002947	5358776 =	71 (1.180)	4 (0.070)	4/252	NT	5.8%	intergenic (‑16/+12)	infB/nusA	translation initiation factor IF‑2/transcription termination/antitermination factor L
	?	NC_002947	5358816 =	63 (1.100)					coding (1454/1482 nt)	nusA	transcription termination/antitermination factor L
*	?	NC_002947	5387192 =	47 (0.780)	5 (0.090)	5/248	NT	10.5%	coding (702/2811 nt)	dld2	D‑lactate dehydrogenase
	?	NC_002947	5387230 =	41 (0.720)					coding (740/2811 nt)	dld2	D‑lactate dehydrogenase
*	?	NC_002947	= 5397806	55 (0.910)	3 (0.050)	3/246	NT	5.3%	coding (818/1731 nt)	hsdS	type I restriction modification system specificity protein
	?	NC_002947	= 5397858	55 (0.980)					coding (870/1731 nt)	hsdS	type I restriction modification system specificity protein
*	?	NC_002947	= 5474952	65 (1.080)	3 (0.050)	3/246	NT	5.1%	intergenic (‑158/‑148)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase
	?	NC_002947	= 5475004	51 (0.910)					intergenic (‑210/‑96)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase
*	?	NC_002947	= 5481616	45 (0.750)	3 (0.050)	3/250	NT	5.8%	coding (1105/1356 nt)	PP_4819	hypothetical protein
	?	NC_002947	= 5481643	55 (0.960)					coding (1132/1356 nt)	PP_4819	hypothetical protein
*	?	NC_002947	= 5506677	38 (0.630)	4 (0.070)	4/246	NT	8.2%	intergenic (+136/‑63)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	= 5506760	54 (0.960)					coding (21/1407 nt)	cycA	D‑alanine/beta‑alanine/D‑serine/glycine permease
*	?	NC_002947	5509285 =	68 (1.130)	4 (0.070)	3/252	NT	5.4%	coding (890/1266 nt)	urtA	urea ABC transporter substrate‑binding protein
	?	NC_002947	5509340 =	74 (1.290)					coding (945/1266 nt)	urtA	urea ABC transporter substrate‑binding protein
*	?	NC_002947	5513242 =	43 (0.710)	6 (0.120)	6/212	NT	17.5%	intergenic (+20/‑134)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	5513350 =	22 (0.460)					intergenic (+128/‑26)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	5545321 =	NA (NA)	78 (1.320)	60/260	NT	100%	intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5621245	0 (0.000)					coding (19/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5545666	NA (NA)	58 (0.990)	47/258	NT	100%	intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	5621244 =	0 (0.000)					coding (20/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5576660	67 (1.110)	7 (0.120)	7/252	NT	10.2%	coding (382/1536 nt)	PP_4906	hypothetical protein
	?	NC_002947	= 5576694	59 (1.030)					coding (416/1536 nt)	PP_4906	hypothetical protein
*	?	NC_002947	= 5581109	37 (0.610)	4 (0.070)	4/252	NT	8.9%	coding (144/1458 nt)	PP_4910	hypothetical protein
	?	NC_002947	= 5581144	47 (0.820)					coding (179/1458 nt)	PP_4910	hypothetical protein
*	?	NC_002947	5594092 =	43 (0.710)	7 (0.150)	6/208	NT	18.2%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594185 =	29 (0.610)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5611621	74 (1.230)	6 (0.100)	4/252	NT	7.9%	coding (615/1176 nt)	PP_4931	hypothetical protein
	?	NC_002947	= 5611647	69 (1.200)					coding (641/1176 nt)	PP_4931	hypothetical protein
*	?	NC_002947	5617548 =	60 (1.000)	3 (0.050)	3/252	NT	5.3%	coding (1104/1176 nt)	wzy	O‑antigen polymerase
	?	NC_002947	5617594 =	49 (0.850)					coding (1058/1176 nt)	wzy	O‑antigen polymerase
*	?	NC_002947	5633087 =	81 (1.350)	5 (0.090)	5/250	NT	6.1%	coding (2617/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	NC_002947	5633124 =	76 (1.330)					coding (2654/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
*	?	NC_002947	5656486 =	65 (1.080)	6 (0.100)	5/254	NT	8.0%	coding (1209/1998 nt)	tktA	transketolase A
	?	NC_002947	5656524 =	75 (1.290)					coding (1171/1998 nt)	tktA	transketolase A
*	?	NC_002947	= 5658546	75 (1.250)	5 (0.090)	5/252	NT	6.2%	coding (601/993 nt)	sahR	methionine metabolism transcriptional regulator
	?	NC_002947	= 5658574	79 (1.370)					coding (629/993 nt)	sahR	methionine metabolism transcriptional regulator
*	?	NC_002947	5681718 =	61 (1.010)	5 (0.090)	4/256	NT	8.0%	coding (242/474 nt)	PP_4987	putative Chemotaxis protein
	?	NC_002947	5681763 =	56 (0.960)					coding (197/474 nt)	PP_4987	putative Chemotaxis protein
*	?	NC_002947	= 5688147	61 (1.010)	4 (0.070)	3/250	NT	6.0%	coding (819/2061 nt)	pilJ	twitching motility protein PilJ
	?	NC_002947	= 5688184	67 (1.180)					coding (782/2061 nt)	pilJ	twitching motility protein PilJ
*	?	NC_002947	5721802 =	56 (0.930)	4 (0.070)	3/246	NT	6.5%	coding (462/735 nt)	glnQ	glutamine transport ATP‑binding protein GlnQ
	?	NC_002947	5721905 =	63 (1.120)					coding (359/735 nt)	glnQ	glutamine transport ATP‑binding protein GlnQ
*	?	NC_002947	5750197 =	66 (1.100)	4 (0.070)	3/246	NT	6.8%	coding (1366/1455 nt)	thiI	tRNA sulfurtransferase
	?	NC_002947	5750242 =	48 (0.860)					coding (1321/1455 nt)	thiI	tRNA sulfurtransferase
*	?	NC_002947	= 5752802	66 (1.100)	4 (0.070)	4/252	NT	5.4%	coding (770/1407 nt)	glnA	glutamine synthetase
	?	NC_002947	= 5752830	78 (1.360)					coding (798/1407 nt)	glnA	glutamine synthetase
*	?	NC_002947	= 5755252	61 (1.010)	4 (0.070)	4/256	NT	6.6%	coding (366/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	= 5755276	54 (0.920)					coding (390/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
*	?	NC_002947	= 5774507	34 (0.560)	3 (0.050)	3/252	NT	7.6%	coding (374/1473 nt)	betB	NAD‑dependent betaine aldehyde dehydrogenase
	?	NC_002947	= 5774533	41 (0.710)					coding (400/1473 nt)	betB	NAD‑dependent betaine aldehyde dehydrogenase
*	?	NC_002947	5786472 =	62 (1.030)	3 (0.060)	3/216	NT	5.7%	intergenic (+15/‑116)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	5786557 =	48 (0.970)					intergenic (+100/‑31)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	5795359 =	60 (1.000)	5 (0.080)	4/258	NT	7.0%	coding (2541/4446 nt)	gltB	L‑glutamate synthase subunit alpha
	?	NC_002947	5795410 =	74 (1.260)					coding (2490/4446 nt)	gltB	L‑glutamate synthase subunit alpha
*	?	NC_002947	= 5811000	74 (1.230)	4 (0.070)	4/254	NT	5.0%	coding (328/2220 nt)	priA	primosome assembly protein
	?	NC_002947	= 5811050	80 (1.380)					coding (378/2220 nt)	priA	primosome assembly protein
*	?	NC_002947	= 5811876	56 (0.930)	7 (0.120)	5/250	NT	12.4%	coding (1204/2220 nt)	priA	primosome assembly protein
	?	NC_002947	= 5811907	46 (0.810)					coding (1235/2220 nt)	priA	primosome assembly protein
*	?	NC_002947	= 5816871	36 (0.600)	10 (0.190)	10/228	NT	23.5%	intergenic (+57/+72)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5816898	34 (0.650)					intergenic (+84/+45)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	5876984 =	49 (0.810)	3 (0.060)	3/216	NT	7.6%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877066 =	33 (0.670)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	5898900 =	68 (1.130)	5 (0.090)	4/256	NT	7.1%	coding (1988/3054 nt)	PP_5173	RND family transporter
	?	NC_002947	5898920 =	65 (1.110)					coding (1968/3054 nt)	PP_5173	RND family transporter
*	?	NC_002947	5914157 =	29 (0.480)	4 (0.080)	4/208	NT	18.7%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5914253 =	12 (0.250)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5952865	77 (1.280)	4 (0.070)	4/252	NT	5.1%	coding (92/2184 nt)	ppk	polyphosphate kinase
	?	NC_002947	= 5952895	74 (1.290)					coding (62/2184 nt)	ppk	polyphosphate kinase
*	?	NC_002947	= 5964575	46 (0.760)	3 (0.050)	3/250	NT	6.4%	coding (665/900 nt)	xerC	tyrosine recombinase XerC
	?	NC_002947	= 5964613	44 (0.770)					coding (703/900 nt)	xerC	tyrosine recombinase XerC
*	?	NC_002947	5976547 =	78 (1.300)	4 (0.070)	4/248	NT	5.5%	coding (348/1491 nt)	yifB	ATP‑dependent chelatase
	?	NC_002947	5976606 =	64 (1.130)					coding (407/1491 nt)	yifB	ATP‑dependent chelatase
*	?	NC_002947	5978356 =	82 (1.360)	5 (0.090)	4/252	NT	6.0%	coding (761/993 nt)	PP_5241	LuxR family transcriptional regulator
	?	NC_002947	5978400 =	78 (1.360)					coding (717/993 nt)	PP_5241	LuxR family transcriptional regulator
*	?	NC_002947	5983860 =	84 (1.400)	4 (0.070)	4/246	NT	5.1%	coding (4505/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5983906 =	71 (1.270)					coding (4551/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
*	?	NC_002947	6000903 =	39 (0.650)	4 (0.090)	3/204	NT	14.0%	intergenic (+10/+99)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6000997 =	19 (0.410)					intergenic (+104/+5)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
*	?	NC_002947	6004601 =	58 (0.960)	4 (0.070)	4/248	NT	7.1%	coding (530/891 nt)	PP_5259	LysR family transcriptional regulator
	?	NC_002947	6004670 =	50 (0.880)					coding (599/891 nt)	PP_5259	LysR family transcriptional regulator
*	?	NC_002947	= 6062972	76 (1.260)	4 (0.070)	4/254	NT	5.5%	intergenic (‑85/‑140)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase
	?	NC_002947	= 6063004	65 (1.120)					intergenic (‑117/‑108)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase
*	?	NC_002947	= 6078490	51 (0.850)	5 (0.090)	5/254	NT	8.1%	coding (736/1290 nt)	PP_5330	MFS transporter
	?	NC_002947	= 6078556	65 (1.120)					coding (670/1290 nt)	PP_5330	MFS transporter
*	?	NC_002947	= 6099339	55 (0.910)	4 (0.070)	4/250	NT	7.3%	coding (163/1458 nt)	zwf	glucose 6‑phosphate 1‑dehydrogenase
	?	NC_002947	= 6099412	49 (0.860)					coding (236/1458 nt)	zwf	glucose 6‑phosphate 1‑dehydrogenase
*	?	NC_002947	6125719 =	55 (0.910)	3 (0.050)	3/248	NT	5.1%	coding (514/1704 nt)	PP_5374	choline/carnitine/betaine transporter family protein
	?	NC_002947	6125757 =	61 (1.080)					coding (552/1704 nt)	PP_5374	choline/carnitine/betaine transporter family protein
*	?	NC_002947	= 6126369	55 (0.910)	3 (0.050)	3/254	NT	5.4%	coding (1164/1704 nt)	PP_5374	choline/carnitine/betaine transporter family protein
	?	NC_002947	= 6126432	53 (0.910)					coding (1227/1704 nt)	PP_5374	choline/carnitine/betaine transporter family protein
*	?	NC_002947	= 6142721	56 (0.930)	3 (0.050)	3/248	NT	5.5%	coding (2457/3159 nt)	cusA	CzcA family RND family copper transporter
	?	NC_002947	= 6142749	50 (0.880)					coding (2485/3159 nt)	cusA	CzcA family RND family copper transporter