breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	1,699	G→T	6.6%	P41Q (CCG→CAG)	parA ←	chromosome partition protein
RA	1,714	A→C	5.9%	L36R (CTG→CGG)	parA ←	chromosome partition protein
RA	6,346	T→G	5.4%	T13P (ACG→CCG)	trmE ←	GTPase
RA	6,433:1	+T	7.7%	intergenic (‑51/+38)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	26,245	A→T	6.2%	Q122L (CAG→CTG)	PP_0021 →	hypothetical protein
RA	26,837:1	+A	10.3%	intergenic (+33/+152)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	26,844	A→T	11.9%	intergenic (+40/+145)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	36,169	G→T	7.6%	intergenic (+54/+29)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,171	A→T	7.6%	intergenic (+56/+27)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,172	A→T	7.6%	intergenic (+57/+26)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,174	A→C	8.3%	intergenic (+59/+24)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	58,435	G→C	7.5%	intergenic (‑346/+342)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,437	T→A	7.8%	intergenic (‑348/+340)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,439	G→C	8.4%	intergenic (‑350/+338)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	62,075	A→G	6.8%	Y107C (TAT→TGT)	PP_0053 →	sulfide:quinone oxidoreductase
RA	62,077	G→T	7.6%	E108* (GAA→TAA) ‡	PP_0053 →	sulfide:quinone oxidoreductase
RA	62,078	A→C	6.9%	E108A (GAA→GCA) ‡	PP_0053 →	sulfide:quinone oxidoreductase
RA	62,080	C→T	6.8%	Q109* (CAG→TAG)	PP_0053 →	sulfide:quinone oxidoreductase
RA	68,340	G→T	8.2%	intergenic (+28/+147)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,342	A→T	7.9%	intergenic (+30/+145)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,344	A→C	8.2%	intergenic (+32/+143)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	97,592	G→T	10.3%	intergenic (+21/+15)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	97,594	A→C	7.8%	intergenic (+23/+13)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	99,666	T→A	7.4%	intergenic (+15/+92)	PP_0093 → / ← PP_0094	zinc protease/5'‑nucleotidase
RA	99,667	T→A	7.4%	intergenic (+16/+91)	PP_0093 → / ← PP_0094	zinc protease/5'‑nucleotidase
RA	99,668	T→A	7.4%	intergenic (+17/+90)	PP_0093 → / ← PP_0094	zinc protease/5'‑nucleotidase
RA	100,112	C→A	9.0%	G99G (GGG→GGT) ‡	PP_0094 ←	5'‑nucleotidase
RA	100,113	C→A	9.7%	G99V (GGG→GTG) ‡	PP_0094 ←	5'‑nucleotidase
RA	100,116	T→G	8.5%	N98T (AAC→ACC) ‡	PP_0094 ←	5'‑nucleotidase
RA	100,117	T→G	8.2%	N98H (AAC→CAC) ‡	PP_0094 ←	5'‑nucleotidase
RA	126,115	A→G	7.5%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	7.6%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	132,467	G→C	5.6%	intergenic (+41/‑111)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	134,397	A→C	5.4%	D98A (GAT→GCT) ‡	PP_0129 →	GGDEF domain‑containing protein
RA	134,398	T→A	5.2%	D98E (GAT→GAA) ‡	PP_0129 →	GGDEF domain‑containing protein
RA	134,399	G→T	5.6%	A99S (GCG→TCG)	PP_0129 →	GGDEF domain‑containing protein
RA	138,949	G→A	6.3%	R519W (CGG→TGG)	kinB ←	alginate biosynthesis sensor protein KinB
RA	150,828	A→C	6.1%	L41R (CTG→CGG) ‡	PP_0142 ←	ABC transporter permease
RA	150,829	G→T	6.8%	L41M (CTG→ATG) ‡	PP_0142 ←	ABC transporter permease
RA	155,543	G→T	8.2%	intergenic (‑248/+35)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	155,546	A→C	8.3%	intergenic (‑251/+32)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	163,034	A→G	6.2%	I267T (ATT→ACT) ‡	scpC ←	propionyl‑CoA:succinate CoA transferase
RA	163,035	T→C	6.2%	I267V (ATT→GTT) ‡	scpC ←	propionyl‑CoA:succinate CoA transferase
RA	163,036	G→A	6.2%	S266S (AGC→AGT) ‡	scpC ←	propionyl‑CoA:succinate CoA transferase
RA	163,037	C→T	6.2%	S266N (AGC→AAC) ‡	scpC ←	propionyl‑CoA:succinate CoA transferase
RA	170,838	G→T	9.1%	intergenic (+19/‑551)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,839	T→G	12.5%	intergenic (+20/‑550)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,840	C→A	10.5%	intergenic (+21/‑549)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,841	A→C	9.1%	intergenic (+22/‑548)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	181,805	T→C	8.4%	intergenic (+19/‑87)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,811	C→T	8.5%	intergenic (+25/‑81)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,812	A→G	8.6%	intergenic (+26/‑80)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,818	G→A	8.4%	intergenic (+32/‑74)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	182,034	G→A	18.3%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	17.1%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	17.5%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	195,559	C→A	22.8%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	11.5%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	11.6%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	33.0%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,961	G→A	5.6%	S489S (TCG→TCA)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	20.6%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	21.9%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	23.7%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	22.4%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	9.9%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	15.9%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	6.1%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	11.3%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	20.9%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	20.5%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	14.0%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	13.1%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	220,618	C→G	7.4%	intergenic (+75/‑53)	PP_0168 → / → PP_5431	putative surface adhesion protein/hypothetical protein
RA	220,619	T→C	7.5%	intergenic (+76/‑52)	PP_0168 → / → PP_5431	putative surface adhesion protein/hypothetical protein
RA	220,622	G→A	7.8%	intergenic (+79/‑49)	PP_0168 → / → PP_5431	putative surface adhesion protein/hypothetical protein
RA	225,366	C→T	8.6%	A99T (GCC→ACC)	PP_0173 ←	transcriptional factor‑like protein
RA	225,369	A→G	8.6%	S98P (TCG→CCG)	PP_0173 ←	transcriptional factor‑like protein
RA	233,832	A→T	7.0%	intergenic (+20/+43)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	233,833	C→G	7.0%	intergenic (+21/+42)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	233,834	A→T	6.7%	intergenic (+22/+41)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	235,330	T→C	8.2%	intergenic (+27/+98)	PP_0183 → / ← argH	glutathione S‑transferase/argininosuccinate lyase
RA	239,052	C→T	5.2%	P45S (CCA→TCA) ‡	hemD →	uroporphyrinogen‑III synthase
RA	239,053	C→T	5.2%	P45L (CCA→CTA) ‡	hemD →	uroporphyrinogen‑III synthase
RA	240,536	G→C	5.5%	G277G (GGG→GGC)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	278,742:1	+A	85.7%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	284,586	T→A	9.8%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,587	T→A	10.3%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	287,067	G→C	5.6%	P19R (CCG→CGG) ‡	tauB‑II ←	taurine ABC transporter ATP‑binding protein
RA	287,068	G→C	5.6%	P19A (CCG→GCG) ‡	tauB‑II ←	taurine ABC transporter ATP‑binding protein
RA	288,014	G→A	5.1%	Q32* (CAG→TAG)	tauA ←	taurine ABC transporter substrate‑binding protein
RA	288,015	G→C	5.1%	Y31* (TAC→TAG) ‡	tauA ←	taurine ABC transporter substrate‑binding protein
RA	288,016	T→C	5.1%	Y31C (TAC→TGC) ‡	tauA ←	taurine ABC transporter substrate‑binding protein
RA	295,758	T→A	7.7%	intergenic (+106/+36)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	295,759	T→A	7.6%	intergenic (+107/+35)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	317,711	C→G	7.2%	E74Q (GAA→CAA)	dctD‑I ←	C4‑dicarboxylate transport transcriptional regulator
RA	317,712	C→G	6.1%	L73L (CTG→CTC)	dctD‑I ←	C4‑dicarboxylate transport transcriptional regulator
RA	322,133	G→A	17.6%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	18.0%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	335,433	C→T	14.3%	intergenic (‑38/+166)	PP_0277 ← / ← PP_5437	hypothetical protein/hypothetical protein
RA	335,434	A→T	14.3%	intergenic (‑39/+165)	PP_0277 ← / ← PP_5437	hypothetical protein/hypothetical protein
RA	335,435	A→G	15.1%	intergenic (‑40/+164)	PP_0277 ← / ← PP_5437	hypothetical protein/hypothetical protein
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	337,809	A→G	17.0%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,816:1	+A	11.3%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819	A→C	11.4%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	C→G	12.9%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	G→T	10.9%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,827	Δ1 bp	10.5%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,836	C→T	12.2%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	345,714	G→C	5.1%	A711G (GCC→GGC)	PP_0287 ←	hypothetical protein
RA	346,118	G→A	9.2%	N576N (AAC→AAT) ‡	PP_0287 ←	hypothetical protein
RA	346,119	T→A	9.1%	N576I (AAC→ATC) ‡	PP_0287 ←	hypothetical protein
RA	346,120	T→C	9.1%	N576D (AAC→GAC) ‡	PP_0287 ←	hypothetical protein
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	355,218	C→A	5.7%	intergenic (‑47/+38)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	355,219	A→C	5.7%	intergenic (‑48/+37)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	355,222	G→T	5.4%	intergenic (‑51/+34)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	355,223	T→G	5.4%	intergenic (‑52/+33)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	358,085	A→G	17.0%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,087	C→T	11.4%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	T→C	12.7%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,091	G→A	13.1%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	A→G	12.0%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,096	C→T	11.4%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	373,305	T→C	7.1%	W183R (TGG→CGG)	dgcB →	dimethylglycine dehydrogenase subunit
RA	380,680	G→T	5.3%	C326F (TGC→TTC) ‡	gbcB →	glycine‑betaine dioxygenase subunit
RA	380,681	C→G	5.2%	C326W (TGC→TGG) ‡	gbcB →	glycine‑betaine dioxygenase subunit
RA	380,682	A→C	5.2%	K327Q (AAG→CAG)	gbcB →	glycine‑betaine dioxygenase subunit
RA	385,475	A→C	9.2%	intergenic (+15/+20)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	390,088	G→T	7.6%	S121I (AGC→ATC)	soxA →	sarcosine oxidase subunit alpha
RA	390,093	A→C	8.1%	M123L (ATG→CTG)	soxA →	sarcosine oxidase subunit alpha
RA	395,846	C→A	10.1%	intergenic (+28/+176)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,847	A→T	10.2%	intergenic (+29/+175)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,848	T→G	9.8%	intergenic (+30/+174)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	401,889	C→T	5.8%	intergenic (+416/+13)	PP_0334 → / ← PP_0335	transposase/glutathione S‑transferase family protein
RA	401,929	C→T	5.5%	S199S (TCG→TCA)	PP_0335 ←	glutathione S‑transferase family protein
RA	407,756	G→C	5.4%	A83A (GCC→GCG)	aceF ←	AceF‑S‑acetyldihydrolipoate
RA	417,372	C→T	7.2%	P361L (CCG→CTG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	417,375	A→G	7.6%	Q362R (CAG→CGG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	418,295	C→G	6.9%	L26L (CTC→CTG)	PP_0345 →	heptose kinase WapP
RA	418,296	C→G	7.3%	Q27E (CAG→GAG)	PP_0345 →	heptose kinase WapP
RA	424,632	G→A	7.0%	N226N (AAC→AAT)	PP_0349 ←	membrane protein
RA	424,638	C→G	7.2%	W224C (TGG→TGC) ‡	PP_0349 ←	membrane protein
RA	424,640	A→C	8.5%	W224G (TGG→GGG) ‡	PP_0349 ←	membrane protein
RA	424,641	G→T	7.1%	A223A (GCC→GCA) ‡	PP_0349 ←	membrane protein
RA	424,643	C→G	7.1%	A223P (GCC→CCC) ‡	PP_0349 ←	membrane protein
RA	424,649	T→C	7.7%	I221V (ATT→GTT)	PP_0349 ←	membrane protein
RA	425,348	A→C	7.3%	intergenic (‑39/+18)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	425,350	G→T	6.9%	intergenic (‑41/+16)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	432,993	A→T	8.3%	intergenic (+18/+29)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,994	A→T	8.3%	intergenic (+19/+28)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,995	A→T	8.3%	intergenic (+20/+27)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	436,904	C→T	6.3%	L128L (CTG→CTA) ‡	PP_0358 ←	membrane protein
RA	436,905	A→T	6.4%	L128Q (CTG→CAG) ‡	PP_0358 ←	membrane protein
RA	441,558	C→G	5.8%	R147G (CGC→GGC)	bioF →	8‑amino‑7‑oxononanoate synthase
RA	445,124	C→A	12.8%	intergenic (+97/‑191)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	448,977	G→A	5.8%	V50I (GTC→ATC)	PP_0370 →	acyl‑CoA dehydrogenase family protein
RA	459,899	C→T	6.4%	intergenic (‑45/+34)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	459,904	A→C	6.2%	intergenic (‑50/+29)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	459,905	G→T	6.5%	intergenic (‑51/+28)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	459,910	A→G	6.7%	intergenic (‑56/+23)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	467,098	A→G	7.7%	intergenic (‑31/+22)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	467,101	C→T	7.8%	intergenic (‑34/+19)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	474,807	A→T	5.8%	Y60N (TAC→AAC)	dnaG ←	DNA primase
RA	474,808	G→C	5.4%	Y59* (TAC→TAG)	dnaG ←	DNA primase
RA	474,811	G→C	5.7%	F58L (TTC→TTG) ‡	dnaG ←	DNA primase
RA	474,812	A→T	5.5%	F58Y (TTC→TAC) ‡	dnaG ←	DNA primase
RA	479,483	A→G	6.6%	intergenic (‑15/+41)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,486	T→C	8.2%	intergenic (‑18/+38)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,493	A→G	10.9%	intergenic (‑25/+31)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,496	A→T	10.3%	intergenic (‑28/+28)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,499	A→T	10.5%	intergenic (‑31/+25)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,502	C→T	10.4%	intergenic (‑34/+22)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,509	G→A	7.9%	intergenic (‑41/+15)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,512	C→T	6.5%	intergenic (‑44/+12)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	484,688	C→T	5.3%	intergenic (‑250/+33)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	484,692	G→C	5.6%	intergenic (‑254/+29)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	484,696	A→G	5.5%	intergenic (‑258/+25)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	502,121	A→T	7.6%	Y137F (TAT→TTT)	PP_0413 →	polyamine ABC transporter permease
RA	502,123	A→T	6.8%	K138* (AAA→TAA)	PP_0413 →	polyamine ABC transporter permease
RA	503,813	A→G	11.4%	intergenic (+16/‑135)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,825	Δ1 bp	18.1%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,831	A→T	20.6%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,832	A→T	19.4%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,837:1	+C	17.1%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	519,337	C→G	7.0%	I242M (ATC→ATG)	argC →	N‑acetyl‑gamma‑glutamyl‑phosphate reductase
RA	519,338	C→G	7.0%	H243D (CAT→GAT)	argC →	N‑acetyl‑gamma‑glutamyl‑phosphate reductase
RA	521,212	T→C	8.9%	E28E (GAA→GAG) ‡	anmK ←	anhydro‑N‑acetylmuramic acid kinase
RA	521,214	C→T	8.4%	E28K (GAA→AAA) ‡	anmK ←	anhydro‑N‑acetylmuramic acid kinase
RA	521,215	A→G	8.5%	L27L (CTT→CTC) ‡	anmK ←	anhydro‑N‑acetylmuramic acid kinase
RA	521,217	G→A	8.6%	L27F (CTT→TTT) ‡	anmK ←	anhydro‑N‑acetylmuramic acid kinase
RA	535,048	T→A	5.9%	intergenic (+33/‑87)	nusG → / → rplK	transcription antipausing factor NusG/50S ribosomal protein L11
RA	535,818	G→T	5.5%	E85* (GAA→TAA)	rplA →	50S ribosomal protein L1
RA	539,941	T→G	6.4%	R773R (CGT→CGG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	539,942	C→A	7.3%	P774T (CCG→ACG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	543,727	A→G	8.3%	N656S (AAC→AGC)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	543,730	C→T	8.0%	A657V (GCT→GTT)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	556,986	A→C	6.3%	K12T (AAG→ACG)	rpsN →	30S ribosomal protein S14
RA	556,989	G→T	5.8%	R13L (CGT→CTT)	rpsN →	30S ribosomal protein S14
RA	558,477	A→C	5.9%	E21D (GAA→GAC)	rplR →	50S ribosomal protein L18
RA	558,478	C→T	5.9%	L22F (CTC→TTC)	rplR →	50S ribosomal protein L18
RA	558,483	A→G	5.7%	E23E (GAA→GAG)	rplR →	50S ribosomal protein L18
RA	558,484	G→T	5.6%	V24F (GTC→TTC)	rplR →	50S ribosomal protein L18
RA	571,214	G→C	6.1%	K62N (AAG→AAC)	ssb →	single‑stranded DNA‑binding protein
RA	571,215	G→C	7.3%	V63L (GTT→CTT)	ssb →	single‑stranded DNA‑binding protein
RA	571,617	G→A	8.1%	intergenic (+43/+48)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	571,618	T→C	8.0%	intergenic (+44/+47)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	572,518	A→G	6.2%	I191T (ATC→ACC)	PP_0486 ←	GntR family transcriptional regulator
RA	572,525	C→T	7.9%	V189M (GTG→ATG)	PP_0486 ←	GntR family transcriptional regulator
RA	607,378	T→A	6.0%	R94R (CGT→CGA)	ribA →	GTP cyclohydrolase II
RA	616,185	G→T	5.6%	I39I (ATC→ATA)	ribB ←	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	635,840	G→T	6.6%	E22* (GAA→TAA) ‡	mpl →	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
RA	635,841	A→T	6.0%	E22V (GAA→GTA) ‡	mpl →	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
RA	635,842	A→C	6.1%	E22D (GAA→GAC) ‡	mpl →	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
RA	639,838	T→A	6.4%	S303C (AGC→TGC)	PP_0551 ←	MORN domain‑containing protein
RA	639,841	C→G	6.4%	G302R (GGC→CGC)	PP_0551 ←	MORN domain‑containing protein
RA	650,845	T→A	8.3%	intergenic (‑134/+46)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	650,846	T→A	8.3%	intergenic (‑135/+45)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	650,848	A→T	7.9%	intergenic (‑137/+43)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	654,403	T→G	5.3%	K114Q (AAG→CAG)	ctpL ←	methyl‑accepting chemotaxis protein CtpL
RA	658,249	T→A	6.7%	intergenic (+56/‑184)	PP_0565 → / → yciH	Nudix hydrolase/translation‑related factor
RA	658,250	T→A	7.1%	intergenic (+57/‑183)	PP_0565 → / → yciH	Nudix hydrolase/translation‑related factor
RA	658,251	T→A	7.1%	intergenic (+58/‑182)	PP_0565 → / → yciH	Nudix hydrolase/translation‑related factor
RA	670,841	Δ1 bp	6.0%	coding (2283/2355 nt)	pbpC →	peptidoglycan glycosyltransferase
RA	676,098	T→C	8.2%	T105A (ACC→GCC)	PP_0578 ←	putative Methyltransferase
RA	676,101	G→A	8.4%	L104L (CTG→TTG)	PP_0578 ←	putative Methyltransferase
RA	676,102	T→C	8.5%	Q103Q (CAA→CAG)	PP_0578 ←	putative Methyltransferase
RA	676,105	G→A	8.6%	G102G (GGC→GGT)	PP_0578 ←	putative Methyltransferase
RA	680,307	G→A	6.1%	L398L (CTG→CTA)	PP_0582 →	thiolase family protein
RA	684,016	A→C	5.1%	L744R (CTG→CGG) ‡	cadA‑II ←	cadmium translocating P‑type ATPase
RA	684,017	G→T	5.2%	L744M (CTG→ATG) ‡	cadA‑II ←	cadmium translocating P‑type ATPase
RA	693,590	C→G	8.2%	G151A (GGC→GCC)	PP_0595 ←	LysR family transcriptional regulator
RA	697,214	T→C	6.1%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,225	C→G	8.3%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	8.3%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,239	G→A	7.4%	intergenic (+166/‑585)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,481	G→A	5.5%	intergenic (+408/‑343)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,485	C→G	5.7%	intergenic (+412/‑339)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,486	C→G	5.7%	intergenic (+413/‑338)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,490	T→C	5.8%	intergenic (+417/‑334)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,722	A→G	43.7%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	707,561	T→C	8.3%	intergenic (‑213/‑38)	rpsT ← / → murJ	30S ribosomal protein S20/lipid II flippase
RA	707,563	T→A	8.4%	intergenic (‑215/‑36)	rpsT ← / → murJ	30S ribosomal protein S20/lipid II flippase
RA	707,565	G→A	8.9%	intergenic (‑217/‑34)	rpsT ← / → murJ	30S ribosomal protein S20/lipid II flippase
RA	709,194	C→G	10.8%	intergenic (+57/‑62)	murJ → / → ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
RA	709,197	C→A	10.8%	intergenic (+60/‑59)	murJ → / → ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
RA	709,199	T→A	10.7%	intergenic (+62/‑57)	murJ → / → ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
RA	709,201	T→G	10.4%	intergenic (+64/‑55)	murJ → / → ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
RA	709,204	C→G	10.0%	intergenic (+67/‑52)	murJ → / → ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
RA	713,884	A→G	6.5%	D117G (GAC→GGC)	fkpB →	peptidylprolyl isomerase
RA	714,966	T→A	5.5%	intergenic (+32/+45)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,967	T→A	5.6%	intergenic (+33/+44)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,968	T→A	5.5%	intergenic (+34/+43)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	718,457	C→G	8.0%	intergenic (+27/+50)	thiO → / ← PP_0613	FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein
RA	718,460	C→T	8.4%	intergenic (+30/+47)	thiO → / ← PP_0613	FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein
RA	718,461	G→A	9.1%	intergenic (+31/+46)	thiO → / ← PP_0613	FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein
RA	725,711	G→A	6.0%	P63L (CCG→CTG)	PP_0619 ←	branched‑chain amino acid ABC transporter substrate‑binding protein
RA	726,621	C→T	8.9%	E45K (GAA→AAA)	PP_0620 ←	GntR family transcriptional regulator
RA	726,622	G→C	9.4%	F44L (TTC→TTG) ‡	PP_0620 ←	GntR family transcriptional regulator
RA	726,623	A→G	9.2%	F44S (TTC→TCC) ‡	PP_0620 ←	GntR family transcriptional regulator
RA	727,316	A→T	6.9%	W6R (TGG→AGG)	PP_0621 ←	hypothetical protein
RA	733,645	A→T	7.7%	intergenic (+19/‑28)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,646	A→T	5.4%	intergenic (+20/‑27)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,647	A→T	5.4%	intergenic (+21/‑26)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	735,610	A→G	11.4%	intergenic (‑36/+97)	PP_0627 ← / ← PP_0628	hypothetical protein/hypothetical protein
RA	735,617	A→G	11.9%	intergenic (‑43/+90)	PP_0627 ← / ← PP_0628	hypothetical protein/hypothetical protein
RA	735,618	C→T	11.9%	intergenic (‑44/+89)	PP_0627 ← / ← PP_0628	hypothetical protein/hypothetical protein
RA	735,625	C→T	10.5%	intergenic (‑51/+82)	PP_0627 ← / ← PP_0628	hypothetical protein/hypothetical protein
RA	748,089	G→T	10.4%	E48* (GAG→TAG)	PP_5449 →	hypothetical protein
RA	812,319	C→A	7.1%	intergenic (‑68/‑160)	PP_0698 ← / → PP_0699	LysR family transcriptional regulator/LysE family transporter
RA	812,329	A→G	7.1%	intergenic (‑78/‑150)	PP_0698 ← / → PP_0699	LysR family transcriptional regulator/LysE family transporter
RA	820,889	G→T	5.1%	R87L (CGT→CTT)	PP_0707 →	hypothetical protein
RA	820,891	C→G	5.0%	Q88E (CAA→GAA) ‡	PP_0707 →	hypothetical protein
RA	820,893	A→C	5.0%	Q88H (CAA→CAC) ‡	PP_0707 →	hypothetical protein
RA	838,003	Δ1 bp	6.8%	intergenic (‑39/+41)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	838,007:1	+C	6.9%	intergenic (‑43/+37)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	848,503	G→A	5.8%	L23F (CTT→TTT)	PP_0730 ←	hypothetical protein
RA	848,505	C→G	6.1%	R22P (CGG→CCG)	PP_0730 ←	hypothetical protein
RA	862,834	A→G	6.7%	N296S (AAC→AGC) ‡	yfcH →	NAD(P)‑binding Rossmann‑fold domain‑containing protein
RA	862,835	C→G	6.9%	N296K (AAC→AAG) ‡	yfcH →	NAD(P)‑binding Rossmann‑fold domain‑containing protein
RA	862,836	C→T	6.9%	L297L (CTG→TTG)	yfcH →	NAD(P)‑binding Rossmann‑fold domain‑containing protein
RA	872,690	A→T	15.1%	Y158N (TAC→AAC)	PP_0756 ←	hypothetical protein
RA	873,418	G→A	6.2%	G18S (GGC→AGC)	PP_5457 →	hypothetical protein
RA	873,425	T→C	7.6%	L20P (CTT→CCT)	PP_5457 →	hypothetical protein
RA	876,015	G→C	6.7%	noncoding (105/142 nt)	PP_mr65 ←	YybP‑YkoY
RA	876,018	G→C	7.1%	noncoding (102/142 nt)	PP_mr65 ←	YybP‑YkoY
RA	895,210	G→C	6.7%	intergenic (+50/+14)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,216	G→A	6.7%	intergenic (+56/+8)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,219	G→C	6.7%	intergenic (+59/+5)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	902,618	C→G	8.9%	intergenic (+44/+32)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,619	A→C	8.7%	intergenic (+45/+31)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,620	A→T	8.8%	intergenic (+46/+30)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,621	G→T	8.8%	intergenic (+47/+29)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,622	C→G	9.2%	intergenic (+48/+28)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	903,026	T→G	7.1%	N158T (AAC→ACC)	nadC ←	quinolinate phosphoribosyltransferase
RA	925,751	T→A	7.5%	Q292L (CAG→CTG)	PP_0805 ←	outer membrane efflux protein
RA	925,753	T→C	9.3%	A291A (GCA→GCG)	PP_0805 ←	outer membrane efflux protein
RA	925,758	G→A	7.7%	R290C (CGC→TGC)	PP_0805 ←	outer membrane efflux protein
RA	925,760	T→A	7.6%	Q289L (CAG→CTG)	PP_0805 ←	outer membrane efflux protein
RA	928,851	G→C	5.9%	P5591A (CCT→GCT)	PP_0806 ←	surface adhesion protein
RA	928,853	G→C	6.0%	P5590R (CCG→CGG)	PP_0806 ←	surface adhesion protein
RA	928,855	G→C	6.0%	S5589R (AGC→AGG)	PP_0806 ←	surface adhesion protein
RA	936,221	G→C	6.1%	A3134G (GCC→GGC)	PP_0806 ←	surface adhesion protein
RA	936,224	G→C	6.6%	P3133R (CCG→CGG)	PP_0806 ←	surface adhesion protein
RA	936,227	G→C	6.6%	T3132S (ACC→AGC) ‡	PP_0806 ←	surface adhesion protein
RA	936,228	T→C	6.6%	T3132A (ACC→GCC) ‡	PP_0806 ←	surface adhesion protein
RA	959,450	T→C	5.8%	F85F (TTT→TTC)	PP_5460 →	membrane protein
RA	971,677	C→T	6.3%	intergenic (+32/‑32)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	971,678	A→T	6.2%	intergenic (+33/‑31)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	975,287	A→T	9.2%	intergenic (+136/+33)	ycfJ → / ← suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA	975,288	A→T	8.3%	intergenic (+137/+32)	ycfJ → / ← suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA	979,594:1	+T	6.1%	coding (1044/1215 nt)	iscS‑I →	cysteine desulfurase
RA	979,599	Δ1 bp	6.1%	coding (1049/1215 nt)	iscS‑I →	cysteine desulfurase
RA	1,013,241	G→C	13.8%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	13.7%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	14.9%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	15.9%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	17.8%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,025,784	T→G	10.7%	D395A (GAC→GCC)	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,025,786	C→G	8.8%	A394A (GCG→GCC) ‡	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,025,788	C→A	7.8%	A394S (GCG→TCG) ‡	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,052,858	Δ1 bp	5.4%	coding (509/1428 nt)	PP_0910 ←	hypothetical protein
RA	1,052,862:1	+A	5.3%	coding (505/1428 nt)	PP_0910 ←	hypothetical protein
RA	1,062,241	G→T	6.8%	G127G (GGG→GGT)	PP_0919 →	hypothetical protein
RA	1,065,725	T→A	5.7%	E40D (GAA→GAT)	PP_0923 ←	acyltransferase
RA	1,065,730	T→A	6.2%	I39F (ATC→TTC)	PP_0923 ←	acyltransferase
RA	1,068,520	Δ1 bp	7.7%	coding (686/948 nt)	PP_0926 →	membrane protein
RA	1,068,527:1	+G	11.1%	coding (693/948 nt)	PP_0926 →	membrane protein
RA	1,070,246:1	+GA	100%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,260	G→C	10.0%	intergenic (+60/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,263	G→C	10.0%	intergenic (+63/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,086,693	T→G	5.6%	D119A (GAC→GCC)	PP_0941 ←	ribosome associated protein
RA	1,095,509:1	+A	100%	coding (552/1494 nt)	rpoN ←	RNA polymerase sigma‑54 factor
RA	1,098,681	G→A	6.8%	H295H (CAC→CAT)	kdsD ←	D‑arabinose 5‑phosphate isomerase
RA	1,101,798	G→T	6.8%	A127S (GCA→TCA) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,101,799	C→G	6.8%	A127G (GCA→GGA) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,101,800	A→C	7.0%	A127A (GCA→GCC) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,103,276	T→G	6.4%	L12R (CTT→CGT)	murA →	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	1,103,278	G→C	6.4%	D13H (GAC→CAC) ‡	murA →	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	1,103,280	C→A	6.6%	D13E (GAC→GAA) ‡	murA →	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	1,103,634	T→C	5.9%	L131L (CTT→CTC)	murA →	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	1,103,642	T→C	6.7%	M134T (ATG→ACG)	murA →	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	1,105,119	C→T	8.9%	A174V (GCC→GTC) ‡	hisG →	ATP phosphoribosyltransferase
RA	1,105,120	C→G	8.9%	A174A (GCC→GCG) ‡	hisG →	ATP phosphoribosyltransferase
RA	1,105,121	A→G	8.4%	T175A (ACG→GCG)	hisG →	ATP phosphoribosyltransferase
RA	1,109,140	T→A	5.4%	D38V (GAC→GTC)	PP_0968 ←	hypothetical protein
RA	1,114,340	C→T	5.8%	G156D (GGC→GAC)	rlmF ←	ribosomal RNA large subunit methyltransferase F
RA	1,114,349	T→A	5.6%	N153I (AAT→ATT)	rlmF ←	ribosomal RNA large subunit methyltransferase F
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,127,417	C→T	6.6%	G712S (GGT→AGT)	gcvP‑I ←	glycine dehydrogenase
RA	1,175,196	C→T	8.3%	L91F (CTC→TTC)	PP_1030 →	hypothetical protein
RA	1,175,201	A→G	8.2%	E92E (GAA→GAG)	PP_1030 →	hypothetical protein
RA	1,178,751	T→A	5.2%	intergenic (+56/+38)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,752	G→T	5.3%	intergenic (+57/+37)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,185,218	G→C	5.3%	L141L (CTG→CTC)	purL →	phosphoribosylformylglycinamidine synthase
RA	1,185,219	G→C	5.3%	E142Q (GAG→CAG)	purL →	phosphoribosylformylglycinamidine synthase
RA	1,185,223	A→T	5.2%	Q143L (CAG→CTG)	purL →	phosphoribosylformylglycinamidine synthase
RA	1,189,035	A→G	11.1%	intergenic (+25/+17)	PP_1038 → / ← tatC‑I	hypothetical protein/Sec‑independent protein translocase protein
RA	1,189,036	C→T	11.1%	intergenic (+26/+16)	PP_1038 → / ← tatC‑I	hypothetical protein/Sec‑independent protein translocase protein
RA	1,196,530	C→T	5.5%	G197G (GGC→GGT)	xcpQ →	type II secretion pathway protein XcpQ
RA	1,212,521	C→T	100%	intergenic (‑55/+133)	PP_1060 ← / ← PP_1061	glutamate synthase large subunit/ATP‑dependent DNA helicase
RA	1,216,824	Δ1 bp	5.5%	coding (135/4305 nt)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,219,704	G→A	6.5%	R84C (CGC→TGC)	glmP ←	alginate biosynthesis membrane protein
RA	1,221,037	T→G	6.1%	D90A (GAC→GCC)	dctD‑II ←	C4‑dicarboxylate transport transcriptional regulator
RA	1,224,611	G→T	8.7%	L23I (CTC→ATC)	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,239,100	G→T	8.9%	intergenic (‑75/‑300)	argF ← / → PP_1080	ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase
RA	1,239,103	A→C	7.9%	intergenic (‑78/‑297)	argF ← / → PP_1080	ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase
RA	1,248,213	C→A	7.4%	intergenic (+26/+42)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,248,214	T→C	7.5%	intergenic (+27/+41)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,248,217	G→A	7.8%	intergenic (+30/+38)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,248,218	T→G	7.1%	intergenic (+31/+37)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,249,690	A→G	6.2%	D196G (GAC→GGC)	bvgA →	virulence factors transcription regulator BvgA
RA	1,264,624	G→C	8.0%	R266G (CGG→GGG)	PP_1106 ←	hypothetical protein
RA	1,264,627	G→C	7.7%	R265G (CGC→GGC)	PP_1106 ←	hypothetical protein
RA	1,264,632	C→G	7.7%	G263A (GGC→GCC)	PP_1106 ←	hypothetical protein
RA	1,265,269	G→T	6.1%	P51T (CCC→ACC)	PP_1106 ←	hypothetical protein
RA	1,272,745	G→T	6.2%	E147* (GAA→TAA)	PP_1113 →	pyridoxal‑phosphate dependent enzyme family protein
RA	1,285,027	T→C	6.7%	G86G (GGT→GGC)	PP_1122 →	OmpA family protein
RA	1,285,028	G→A	6.7%	G87S (GGT→AGT) ‡	PP_1122 →	OmpA family protein
RA	1,285,029	G→A	6.6%	G87D (GGT→GAT) ‡	PP_1122 →	OmpA family protein
RA	1,285,037	T→C	7.5%	L90L (TTG→CTG) ‡	PP_1122 →	OmpA family protein
RA	1,285,038	T→A	7.4%	L90* (TTG→TAG) ‡	PP_1122 →	OmpA family protein
RA	1,285,039	G→A	7.5%	L90L (TTG→TTA) ‡	PP_1122 →	OmpA family protein
RA	1,285,047	T→C	5.6%	I93T (ATT→ACT)	PP_1122 →	OmpA family protein
RA	1,294,114	C→T	7.7%	intergenic (+15/+25)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,294,115	A→T	7.4%	intergenic (+16/+24)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,294,116	A→G	7.6%	intergenic (+17/+23)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,295,013	Δ1 bp	8.0%	intergenic (+29/+41)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,018	T→A	9.6%	intergenic (+34/+36)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,021	T→A	10.9%	intergenic (+37/+33)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,025:1	+T	9.1%	intergenic (+41/+29)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,307,786	G→C	8.2%	intergenic (‑169/‑125)	livK ← / → PP_1142	branched‑chain amino acids ABC transporter substrate‑binding protein/hypothetical protein
RA	1,310,130	A→T	5.6%	L468Q (CTG→CAG)	PP_1144 ←	membrane protein
RA	1,313,320	T→A	6.8%	H446L (CAC→CTC)	rapA ←	RNA polymerase‑associated protein RapA
RA	1,313,323	T→A	6.8%	E445V (GAG→GTG)	rapA ←	RNA polymerase‑associated protein RapA
RA	1,327,121	C→T	51.2%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,356,019	G→C	7.6%	intergenic (+286/‑106)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,024	T→C	7.8%	intergenic (+291/‑101)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,030	A→G	7.8%	intergenic (+297/‑95)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,035	C→G	7.4%	intergenic (+302/‑90)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,040	G→C	8.2%	intergenic (+307/‑85)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,043	C→T	8.3%	intergenic (+310/‑82)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,049	G→A	8.5%	intergenic (+316/‑76)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,405	G→C	5.9%	G94A (GGC→GCC)	PP_1181 →	two‑component system response regulator
RA	1,361,428	T→C	6.6%	H164H (CAT→CAC)	phoP →	two‑component system DNA‑binding transcriptional regulator
RA	1,361,433	A→T	8.3%	Q166L (CAG→CTG)	phoP →	two‑component system DNA‑binding transcriptional regulator
RA	1,361,436	A→T	7.0%	Q167L (CAG→CTG)	phoP →	two‑component system DNA‑binding transcriptional regulator
RA	1,361,441	G→A	6.8%	V169M (GTG→ATG)	phoP →	two‑component system DNA‑binding transcriptional regulator
RA	1,366,548	T→G	14.7%	E51A (GAG→GCG)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,551	A→T	14.5%	V50D (GTC→GAC)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,554	C→A	9.9%	R49L (CGC→CTC)	PP_1191 ←	S4 domain‑containing protein
RA	1,380,722	G→T	7.7%	intergenic (‑110/+25)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,380,723	T→A	7.7%	intergenic (‑111/+24)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,380,725	A→C	7.7%	intergenic (‑113/+22)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,381,491	A→C	6.1%	Y81S (TAC→TCC) ‡	dinB →	DNA polymerase IV
RA	1,381,492	C→A	6.4%	Y81* (TAC→TAA) ‡	dinB →	DNA polymerase IV
RA	1,381,495	T→G	6.7%	R82R (CGT→CGG)	dinB →	DNA polymerase IV
RA	1,381,496	G→T	6.8%	E83* (GAG→TAG)	dinB →	DNA polymerase IV
RA	1,383,621	A→C	8.0%	A470A (GCT→GCG)	proS ←	proline‑‑tRNA ligase
RA	1,383,625	A→C	7.8%	L469R (CTG→CGG) ‡	proS ←	proline‑‑tRNA ligase
RA	1,383,626	G→T	7.5%	L469M (CTG→ATG) ‡	proS ←	proline‑‑tRNA ligase
RA	1,383,631	T→C	7.5%	D467G (GAC→GGC)	proS ←	proline‑‑tRNA ligase
RA	1,400,874	A→T	7.9%	intergenic (+37/‑132)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,876	T→G	8.6%	intergenic (+39/‑130)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,410,137	C→G	5.4%	Y269* (TAC→TAG)	nadA →	quinolinate synthase iron‑sulfur cluster subunit
RA	1,416,862	G→A	7.6%	R37Q (CGG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,868	T→A	8.6%	L39Q (CTG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,419,548:1	+C	100%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,433,029	T→A	12.9%	intergenic (+17/+107)	xenA → / ← PP_1255	protein XenA/cis‑4‑hydroxy‑D‑proline oxidase
RA	1,433,030	T→A	12.9%	intergenic (+18/+106)	xenA → / ← PP_1255	protein XenA/cis‑4‑hydroxy‑D‑proline oxidase
RA	1,433,031	T→A	12.9%	intergenic (+19/+105)	xenA → / ← PP_1255	protein XenA/cis‑4‑hydroxy‑D‑proline oxidase
RA	1,458,117	T→G	8.2%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,119	A→T	9.4%	intergenic (+19/+21)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,121	C→A	10.3%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,463,024	A→T	9.9%	intergenic (‑100/+42)	algI ← / ← algL	alginate O‑acetylase AlgI/alginate lyase
RA	1,463,025	A→T	9.9%	intergenic (‑101/+41)	algI ← / ← algL	alginate O‑acetylase AlgI/alginate lyase
RA	1,469,808	A→G	9.7%	V112A (GTG→GCG)	algK ←	alginate biosynthesis protein AlgK
RA	1,469,811	A→T	10.0%	L111Q (CTG→CAG)	algK ←	alginate biosynthesis protein AlgK
RA	1,469,814	A→T	9.7%	L110Q (CTG→CAG)	algK ←	alginate biosynthesis protein AlgK
RA	1,469,817	C→T	9.5%	R109H (CGC→CAC)	algK ←	alginate biosynthesis protein AlgK
RA	1,474,995	T→G	13.2%	intergenic (‑775/+26)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,474,996	C→A	14.8%	intergenic (‑776/+25)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,491,821	C→T	9.1%	A495V (GCG→GTG)	cysNC →	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
RA	1,493,487	A→T	12.8%	W462R (TGG→AGG)	PP_1306 ←	Pyocin S‑type killer domain‑containing protein
RA	1,496,381	T→G	8.9%	C270W (TGT→TGG)	mdeA →	methionine gamma‑lyase
RA	1,496,382	G→C	9.2%	A271P (GCC→CCC) ‡	mdeA →	methionine gamma‑lyase
RA	1,496,383	C→A	8.8%	A271D (GCC→GAC) ‡	mdeA →	methionine gamma‑lyase
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,503,125	C→A	7.7%	intergenic (‑186/‑73)	tas ← / → rplM	NAD(P)‑linked reductase/50S ribosomal protein L13
RA	1,503,126	T→A	7.1%	intergenic (‑187/‑72)	tas ← / → rplM	NAD(P)‑linked reductase/50S ribosomal protein L13
RA	1,503,127	T→G	7.4%	intergenic (‑188/‑71)	tas ← / → rplM	NAD(P)‑linked reductase/50S ribosomal protein L13
RA	1,504,067	T→A	6.4%	intergenic (+34/‑229)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,068	T→A	6.4%	intergenic (+35/‑228)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,521,246	T→G	10.7%	F168C (TTC→TGC) ‡	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,521,247	C→G	10.6%	F168L (TTC→TTG) ‡	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,521,248	C→A	12.0%	Q169K (CAG→AAG)	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,524,311	C→T	7.3%	R339C (CGC→TGC)	murG →	UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑ (pentapeptide) pyrophosphoryl‑undecaprenol N‑acetylglucosamine transferase
RA	1,537,752	A→T	6.8%	P253P (CCA→CCT)	PP_1348 →	MutT/nudix family protein/thiamine‑phosphate pyrophosphorylase
RA	1,537,754	T→C	6.9%	V254A (GTG→GCG) ‡	PP_1348 →	MutT/nudix family protein/thiamine‑phosphate pyrophosphorylase
RA	1,537,755	G→A	6.8%	V254V (GTG→GTA) ‡	PP_1348 →	MutT/nudix family protein/thiamine‑phosphate pyrophosphorylase
RA	1,537,757	A→T	6.8%	Q255L (CAG→CTG)	PP_1348 →	MutT/nudix family protein/thiamine‑phosphate pyrophosphorylase
RA	1,544,489	C→A	26.0%	intergenic (+48/+66)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,492	G→C	26.0%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,494	C→G	30.6%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,499	C→G	26.8%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,501	G→C	30.6%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,504	T→G	28.6%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,547,033	T→A	9.3%	W124R (TGG→AGG)	PP_1357 →	hypothetical protein
RA	1,551,282	G→T	8.6%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,551,285	A→C	8.6%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,555,388	A→C	7.6%	intergenic (+26/+48)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,389	T→A	8.0%	intergenic (+27/+47)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,390	G→T	8.0%	intergenic (+28/+46)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,560,594	C→A	8.3%	L499L (CTG→CTT) ‡	pctA ←	methyl‑accepting chemotaxis protein PctA
RA	1,560,596	G→T	6.4%	L499M (CTG→ATG) ‡	pctA ←	methyl‑accepting chemotaxis protein PctA
RA	1,560,597	A→C	6.6%	N498K (AAT→AAG) ‡	pctA ←	methyl‑accepting chemotaxis protein PctA
RA	1,560,599	T→G	6.6%	N498H (AAT→CAT) ‡	pctA ←	methyl‑accepting chemotaxis protein PctA
RA	1,563,827	G→T	14.6%	intergenic (+93/+29)	PP_1372 → / ← pitB	hypothetical protein/phosphate transporter
RA	1,563,828	A→C	17.1%	intergenic (+94/+28)	PP_1372 → / ← pitB	hypothetical protein/phosphate transporter
RA	1,567,981	G→C	9.7%	V155V (GTG→GTC)	pcaK →	4‑hydroxybenzoate transporter
RA	1,579,674	G→C	72.6%	Q575E (CAG→GAG)	ttgB ←	efflux pump membrane protein TtgB
RA	1,585,219	G→A	5.6%	intergenic (‑206/‑170)	PP_1388 ← / → PP_1389	EmrB/QacA family drug resistance transporter/oxaloacetate decarboxylase
RA	1,585,220	G→C	5.6%	intergenic (‑207/‑169)	PP_1388 ← / → PP_1389	EmrB/QacA family drug resistance transporter/oxaloacetate decarboxylase
RA	1,585,221	T→C	5.9%	intergenic (‑208/‑168)	PP_1388 ← / → PP_1389	EmrB/QacA family drug resistance transporter/oxaloacetate decarboxylase
RA	1,586,720	G→A	6.0%	A229V (GCG→GTG)	PP_1391 ←	LysR family transcriptional regulator
RA	1,591,982	C→A	13.8%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,987	T→G	13.9%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,594,249	T→C	10.4%	T392A (ACC→GCC)	kgtP ←	alpha‑ketoglutarate permease
RA	1,594,250	G→A	10.5%	G391G (GGC→GGT)	kgtP ←	alpha‑ketoglutarate permease
RA	1,598,828	A→G	9.5%	intergenic (‑67/+64)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,599,859	C→T	5.6%	R442H (CGC→CAC)	bglX ←	beta‑D‑glucoside glucohydrolase
RA	1,600,070	A→T	6.6%	Y372N (TAC→AAC)	bglX ←	beta‑D‑glucoside glucohydrolase
RA	1,600,653	C→T	7.6%	S177S (TCG→TCA)	bglX ←	beta‑D‑glucoside glucohydrolase
RA	1,602,066	T→A	11.1%	intergenic (+79/‑88)	PP_1404 → / → PP_5469	hypothetical protein/SAM‑dependent methyltransferase
RA	1,602,067	T→A	11.1%	intergenic (+80/‑87)	PP_1404 → / → PP_5469	hypothetical protein/SAM‑dependent methyltransferase
RA	1,602,068	T→A	11.1%	intergenic (+81/‑86)	PP_1404 → / → PP_5469	hypothetical protein/SAM‑dependent methyltransferase
RA	1,608,462	G→C	5.7%	D36E (GAC→GAG) ‡	rsuA ←	16S rRNA pseudouridine(516) synthase
RA	1,608,463	T→C	5.5%	D36G (GAC→GGC) ‡	rsuA ←	16S rRNA pseudouridine(516) synthase
RA	1,622,188	G→A	6.7%	E368K (GAG→AAG) ‡	PP_1421 →	sensor histidine kinase TctE
RA	1,622,190	G→C	6.9%	E368D (GAG→GAC) ‡	PP_1421 →	sensor histidine kinase TctE
RA	1,622,192	T→C	7.0%	L369S (TTG→TCG)	PP_1421 →	sensor histidine kinase TctE
RA	1,625,207	G→T	21.2%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,625,208	A→C	25.4%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,629,453	G→T	13.4%	Q321H (CAG→CAT)	mucB →	sigma factor AlgU regulator MucB
RA	1,629,456	A→C	11.9%	*322Y (TAA→TAC)	mucB →	sigma factor AlgU regulator MucB
RA	1,631,094	T→G	5.9%	intergenic (+28/‑153)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,633,545	T→G	9.3%	V165G (GTC→GGC)	lepB →	signal peptidase I
RA	1,633,552	C→G	11.9%	G167G (GGC→GGG)	lepB →	signal peptidase I
RA	1,633,554	A→T	12.1%	Q168L (CAG→CTG)	lepB →	signal peptidase I
RA	1,633,556	C→G	12.5%	P169A (CCC→GCC)	lepB →	signal peptidase I
RA	1,633,563	C→A	11.1%	A171D (GCC→GAC)	lepB →	signal peptidase I
RA	1,637,309	C→T	7.5%	intergenic (+18/+48)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,315	T→C	7.4%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,325	A→T	9.1%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,326	A→T	9.1%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,639,565	A→G	12.4%	intergenic (‑155/‑156)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,575	C→T	13.8%	intergenic (‑165/‑146)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,576	G→T	13.6%	intergenic (‑166/‑145)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,580	G→A	13.5%	intergenic (‑170/‑141)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,581	T→C	13.5%	intergenic (‑171/‑140)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,585	A→C	13.3%	intergenic (‑175/‑136)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,586	A→G	13.5%	intergenic (‑176/‑135)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,596	C→T	15.2%	intergenic (‑186/‑125)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,654,134	G→C	10.2%	R879G (CGC→GGC)	PP_1449 ←	hypothetical protein
RA	1,654,136	G→C	10.9%	P878R (CCG→CGG)	PP_1449 ←	hypothetical protein
RA	1,654,138	G→C	10.8%	A877A (GCC→GCG)	PP_1449 ←	hypothetical protein
RA	1,655,512	G→C	8.7%	L419L (CTC→CTG) ‡	PP_1449 ←	hypothetical protein
RA	1,655,513	A→T	8.7%	L419H (CTC→CAC) ‡	PP_1449 ←	hypothetical protein
RA	1,655,517	T→C	8.3%	I418V (ATC→GTC)	PP_1449 ←	hypothetical protein
RA	1,655,522	A→T	7.8%	L416Q (CTG→CAG) ‡	PP_1449 ←	hypothetical protein
RA	1,655,523	G→C	7.9%	L416V (CTG→GTG) ‡	PP_1449 ←	hypothetical protein
RA	1,657,538	T→A	7.5%	D319V (GAC→GTC)	PP_1450 ←	TPS family activation/secretion protein
RA	1,667,902	A→G	9.3%	S302G (AGC→GGC)	ffh →	signal recognition particle GTPase subunit
RA	1,667,908	A→C	7.9%	I304L (ATC→CTC)	ffh →	signal recognition particle GTPase subunit
RA	1,667,913	G→T	8.0%	E305D (GAG→GAT)	ffh →	signal recognition particle GTPase subunit
RA	1,667,919	C→T	7.8%	A307A (GCC→GCT)	ffh →	signal recognition particle GTPase subunit
RA	1,670,626	T→C	6.2%	intergenic (+49/‑46)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,670,627	T→G	6.3%	intergenic (+50/‑45)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,670,628	C→A	7.3%	intergenic (+51/‑44)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,674,839	A→G	9.2%	K2K (AAA→AAG)	hom →	homoserine dehydrogenase
RA	1,683,248	C→G	12.9%	intergenic (+57/‑174)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,683,251	C→G	10.6%	intergenic (+60/‑171)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,684,272	T→C	6.5%	F284S (TTT→TCT)	PP_1478 →	xenobiotic reductase
RA	1,684,277	G→A	6.5%	E286K (GAG→AAG)	PP_1478 →	xenobiotic reductase
RA	1,685,130	G→T	8.0%	intergenic (‑8/+224)	PP_1480 ← / ← patD	hypothetical protein/medium chain aldehyde dehydrogenase
RA	1,685,132	A→T	8.2%	intergenic (‑10/+222)	PP_1480 ← / ← patD	hypothetical protein/medium chain aldehyde dehydrogenase
RA	1,685,134	A→C	8.2%	intergenic (‑12/+220)	PP_1480 ← / ← patD	hypothetical protein/medium chain aldehyde dehydrogenase
RA	1,688,583	G→T	7.8%	A318A (GCC→GCA)	ydcT ←	polyamine ABC transporter ATP‑binding protein
RA	1,691,786	T→G	5.8%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,693,792	C→G	6.5%	R87R (CGC→CGG)	PP_1489 →	CheW domain‑containing protein
RA	1,703,248	A→G	14.5%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	15.2%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	14.3%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,707,227	G→C	8.0%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,230	G→C	8.1%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,951	T→A	12.1%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,952	T→A	11.9%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,724,453	T→A	6.3%	intergenic (+20/+29)	PP_1517 → / ← PP_1518	RND family transporter/hypothetical protein
RA	1,753,062	A→G	8.1%	Q11R (CAG→CGG)	PP_1555 →	putative Phage integrase
RA	1,753,064	G→C	7.9%	A12P (GCC→CCC) ‡	PP_1555 →	putative Phage integrase
RA	1,753,066	C→T	8.3%	A12A (GCC→GCT) ‡	PP_1555 →	putative Phage integrase
RA	1,753,073	C→G	6.9%	Q15E (CAA→GAA)	PP_1555 →	putative Phage integrase
RA	1,757,734	T→G	5.5%	W264G (TGG→GGG)	PP_1563 →	terminase large subunit
RA	1,768,092	A→G	5.5%	I711V (ATC→GTC)	PP_1577 →	lambda family tail tape meausure protein
JC	1,780,067	Δ62 bp	34.7%	intergenic (+26/+19)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,129	T→C	12.8%	intergenic (+88/+18)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,786,022	T→A	9.8%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,023	T→A	9.8%	intergenic (+39/‑147)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,024	T→A	9.8%	intergenic (+40/‑146)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,944	A→G	7.6%	T259A (ACC→GCC)	tsf →	elongation factor Ts
RA	1,786,952	C→T	9.2%	F261F (TTC→TTT)	tsf →	elongation factor Ts
RA	1,786,953	A→G	9.1%	K262E (AAA→GAA)	tsf →	elongation factor Ts
RA	1,786,961	C→T	8.7%	G264G (GGC→GGT)	tsf →	elongation factor Ts
RA	1,810,335	T→G	8.0%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,812,302	G→C	8.1%	A39G (GCC→GGC) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,812,303	C→A	7.9%	A39S (GCC→TCC) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,812,308	T→G	8.1%	Q37P (CAG→CCG) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,812,309	G→C	8.1%	Q37E (CAG→GAG) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,826,697	G→C	5.2%	W46S (TGG→TCG)	pncC →	NMN amidohydrolase
RA	1,826,702	G→C	5.3%	E48Q (GAG→CAG)	pncC →	NMN amidohydrolase
RA	1,831,780	T→C	9.4%	L220P (CTG→CCG)	yfiP →	hypothetical protein
RA	1,844,700	A→T	5.5%	W32R (TGG→AGG)	gacS ←	sensor protein GacS
RA	1,873,895	G→C	6.7%	G69A (GGC→GCC)	cobU →	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
RA	1,898,983	T→C	10.8%	intergenic (+53/‑467)	PP_t18 → / → PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
RA	1,898,986	G→A	11.1%	intergenic (+56/‑464)	PP_t18 → / → PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
RA	1,903,349	G→C	6.7%	M1300I (ATG→ATC)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,915,598:1	+A	9.2%	intergenic (+26/‑263)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,602	T→A	9.2%	intergenic (+30/‑259)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,605	Δ1 bp	9.2%	intergenic (+33/‑256)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,921,550	T→A	11.4%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,927,034	G→A	7.2%	intergenic (‑169/‑159)	PP_1726 ← / → PP_1727	ABC transporter substrate‑binding protein/GntR family transcriptional regulator
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,955,965	T→A	8.2%	A201A (GCT→GCA)	PP_1753 →	DMT superfamily permease
RA	1,969,983	G→A	7.4%	P118P (CCG→CCA)	mtnA →	methylthioribose‑1‑phosphate isomerase
RA	1,975,985	A→G	6.5%	Y306C (TAT→TGT) ‡	pheA →	bifunctional chorismate mutase/prephenate dehydratase
RA	1,975,986	T→A	7.7%	Y306* (TAT→TAA) ‡	pheA →	bifunctional chorismate mutase/prephenate dehydratase
RA	1,978,708	C→G	7.1%	F45L (TTC→TTG)	cmk →	cytidylate kinase
RA	1,983,945	G→A	7.0%	A46T (GCC→ACC)	PP_1776 →	bifunctional mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,987,438	T→C	7.1%	D231D (GAT→GAC)	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,440	T→C	7.2%	L232S (TTG→TCG) ‡	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,441	G→A	7.0%	L232L (TTG→TTA) ‡	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,443	G→A	7.7%	S233N (AGT→AAT)	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	2,025,124	C→T	23.4%	L42F (CTC→TTC)	wbpZ →	glycosyl transferase
RA	2,026,908	C→T	8.7%	I222I (ATC→ATT)	wbpV →	UDP‑sugar epimerase
RA	2,028,639:1	+C	8.5%	coding (379/2067 nt)	wbpM →	polysaccharide biosynthesis protein
RA	2,028,645	T→C	7.9%	W129R (TGG→CGG) ‡	wbpM →	polysaccharide biosynthesis protein
RA	2,028,646	G→A	8.1%	W129* (TGG→TAG) ‡	wbpM →	polysaccharide biosynthesis protein
RA	2,028,652	Δ1 bp	5.6%	coding (392/2067 nt)	wbpM →	polysaccharide biosynthesis protein
RA	2,035,850	T→C	7.8%	A55A (GCA→GCG)	PP_5477 ←	hypothetical protein
RA	2,040,747	C→G	6.5%	F41L (TTC→TTG)	pyrF →	orotidine 5'‑phosphate decarboxylase
RA	2,042,436:1	+A	8.0%	coding (120/1002 nt)	PP_1816 ←	alcohol dehydrogenase
RA	2,042,440	A→T	8.1%	L39Q (CTG→CAG)	PP_1816 ←	alcohol dehydrogenase
RA	2,045,670	T→G	7.4%	I295S (ATC→AGC)	PP_1819 →	methyl‑accepting chemotaxis transducer
RA	2,045,675	A→G	7.4%	I297V (ATC→GTC)	PP_1819 →	methyl‑accepting chemotaxis transducer
RA	2,045,677	Δ1 bp	7.4%	coding (891/1941 nt)	PP_1819 →	methyl‑accepting chemotaxis transducer
RA	2,045,686:1	+G	6.5%	coding (900/1941 nt)	PP_1819 →	methyl‑accepting chemotaxis transducer
RA	2,045,688	C→T	6.2%	T301M (ACG→ATG)	PP_1819 →	methyl‑accepting chemotaxis transducer
RA	2,045,698	G→A	6.1%	A304A (GCG→GCA)	PP_1819 →	methyl‑accepting chemotaxis transducer
RA	2,049,303	G→T	8.8%	intergenic (‑32/+28)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,049,304	A→C	10.6%	intergenic (‑33/+27)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,063,192	C→A	9.0%	intergenic (+49/‑158)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,193	A→C	10.5%	intergenic (+50/‑157)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,194	T→C	8.9%	intergenic (+51/‑156)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,201	G→A	12.2%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,205	T→C	10.2%	intergenic (+62/‑145)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,208	G→A	10.2%	intergenic (+65/‑142)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,221	T→G	12.9%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,082,281	T→A	5.1%	*318L (TAA→TTA)	PP_1861 ←	LysR family transcriptional regulator
RA	2,085,589	C→T	11.7%	intergenic (+298/‑297)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,085,591	A→G	11.4%	intergenic (+300/‑295)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,085,592	C→T	11.4%	intergenic (+301/‑294)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,085,594	A→G	14.6%	intergenic (+303/‑292)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,100,007	A→C	21.6%	intergenic (‑118/‑87)	PP_1875 ← / → PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
RA	2,104,697	A→G	6.6%	F63L (TTC→CTC)	PP_1879 ←	hypothetical protein
RA	2,104,698	C→T	6.6%	E62E (GAG→GAA)	PP_1879 ←	hypothetical protein
RA	2,107,083	A→T	7.3%	C12S (TGT→AGT)	PP_1880 ←	outer membrane autotransporter
RA	2,117,893	T→C	6.5%	C523C (TGT→TGC)	PP_1884 →	hypothetical protein
RA	2,128,229	A→T	8.7%	A1200A (GCA→GCT)	PP_1887 →	hypothetical protein
RA	2,128,232	A→T	7.4%	Q1201H (CAA→CAT)	PP_1887 →	hypothetical protein
RA	2,128,233	A→T	8.4%	M1202L (ATG→TTG)	PP_1887 →	hypothetical protein
RA	2,128,236	A→T	7.7%	S1203C (AGC→TGC)	PP_1887 →	hypothetical protein
RA	2,131,363	G→A	7.4%	A279V (GCC→GTC)	fimD ←	type I pili subunit FimD
RA	2,132,762	T→C	8.9%	N84D (AAT→GAT)	PP_1890 ←	type I pili chaperone protein FimC
RA	2,138,409	T→G	9.2%	L171R (CTG→CGG)	yadG →	ABC transporter ATP‑binding protein
RA	2,138,414	C→A	9.8%	R173S (CGC→AGC)	yadG →	ABC transporter ATP‑binding protein
RA	2,144,368	G→C	6.1%	Q239H (CAG→CAC)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,144,372	C→A	6.0%	L241M (CTG→ATG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,152,779	A→G	5.2%	D168G (GAT→GGT)	PP_1907 →	haloacid dehalogenase‑like family hydrolase
RA	2,166,707	C→A	10.4%	intergenic (‑551/‑230)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,166,708	T→A	10.7%	intergenic (‑552/‑229)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,166,709	T→G	10.7%	intergenic (‑553/‑228)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,168,190	A→T	5.5%	intergenic (+90/+598)	PP_1921 → / ← PP_1922	hypothetical protein/hypothetical protein
RA	2,168,191	G→C	5.5%	intergenic (+91/+597)	PP_1921 → / ← PP_1922	hypothetical protein/hypothetical protein
RA	2,168,192	A→T	5.5%	intergenic (+92/+596)	PP_1921 → / ← PP_1922	hypothetical protein/hypothetical protein
RA	2,178,185	Δ1 bp	6.7%	coding (421/1437 nt)	PP_1931 →	hypothetical protein
RA	2,199,963:1	+C	6.5%	coding (829/1278 nt)	PP_1944 →	aminomethyltransferase
RA	2,213,154	G→T	10.2%	intergenic (+50/‑21)	PP_1955 → / → PP_1956	cytochrome P450 family protein/hypothetical protein
RA	2,213,155	A→T	10.0%	intergenic (+51/‑20)	PP_1955 → / → PP_1956	cytochrome P450 family protein/hypothetical protein
RA	2,213,156	A→C	10.0%	intergenic (+52/‑19)	PP_1955 → / → PP_1956	cytochrome P450 family protein/hypothetical protein
RA	2,228,274	A→C	7.9%	T143P (ACG→CCG) ‡	holB →	DNA polymerase III subunit delta'
RA	2,228,275	C→G	7.7%	T143R (ACG→AGG) ‡	holB →	DNA polymerase III subunit delta'
RA	2,242,098	G→C	16.0%	noncoding (35/76 nt)	PP_t29 →	tRNA‑Ala
RA	2,255,974	G→T	7.7%	intergenic (+34/‑670)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,255,975	T→C	7.7%	intergenic (+35/‑669)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,273,062	C→G	14.6%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,066	A→T	15.3%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,070	C→G	15.6%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,080	C→T	12.2%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,305,212	G→A	11.6%	L449L (CTG→TTG)	PP_2028 ←	TPR repeat‑containing protein
RA	2,305,213	T→C	10.9%	Q448Q (CAA→CAG)	PP_2028 ←	TPR repeat‑containing protein
RA	2,314,990	C→T	6.9%	P45P (CCG→CCA)	PP_2036 ←	4‑hydroxy‑tetrahydrodipicolinate synthase
RA	2,327,762	C→G	5.8%	A189A (GCG→GCC)	PP_2046 ←	LysR family transcriptional regulator
RA	2,338,785	A→G	8.1%	D193G (GAC→GGC)	PP_2055 →	isomerase
RA	2,338,796	C→T	8.1%	P197S (CCG→TCG)	PP_2055 →	isomerase
RA	2,352,966	T→C	7.1%	N100S (AAC→AGC)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,367,410	A→C	9.5%	Q76H (CAA→CAC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,367,411	G→T	9.2%	V77L (GTG→TTG)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,372,081	G→T	10.4%	intergenic (+33/+79)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,082	T→C	10.8%	intergenic (+34/+78)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,083	G→A	11.0%	intergenic (+35/+77)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,084	A→C	10.4%	intergenic (+36/+76)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,389,278	C→T	14.5%	R47C (CGC→TGC)	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,389,281	G→T	12.3%	E48* (GAG→TAG) ‡	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,389,282	A→C	12.5%	E48A (GAG→GCG) ‡	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,389,285	A→G	12.5%	H49R (CAC→CGC)	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,392,617	C→G	8.9%	I382M (ATC→ATG)	PP_2097 →	sensory box protein
RA	2,398,162	G→T	6.4%	L499I (CTC→ATC)	PP_2100 ←	two‑component system sensor protein
RA	2,405,230	A→C	10.8%	H76P (CAC→CCC)	PP_2108 →	hypothetical protein
RA	2,405,232	G→T	10.9%	V77L (GTG→TTG)	PP_2108 →	hypothetical protein
RA	2,405,237	A→C	10.7%	Q78H (CAA→CAC)	PP_2108 →	hypothetical protein
RA	2,405,239	G→T	10.4%	G79V (GGG→GTG)	PP_2108 →	hypothetical protein
RA	2,412,876	G→C	8.0%	intergenic (+140/‑281)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,412,877	G→C	8.0%	intergenic (+141/‑280)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,420,598	Δ1 bp	10.1%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,420,602:1	+T	10.0%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,440,530	T→A	8.5%	V7E (GTA→GAA)	PP_2138 →	hypothetical protein
RA	2,444,415	A→C	6.1%	*159G (TGA→GGA)	sulA ←	cell division inhibitor SulA
RA	2,444,419	G→T	6.2%	L157L (CTC→CTA) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,420	A→C	6.4%	L157R (CTC→CGC) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,424	G→T	6.6%	R156S (CGC→AGC)	sulA ←	cell division inhibitor SulA
RA	2,455,254	G→T	9.2%	intergenic (‑136/‑32)	mfd ← / → gapB	transcription‑repair coupling factor/glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,455,255	T→A	7.9%	intergenic (‑137/‑31)	mfd ← / → gapB	transcription‑repair coupling factor/glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,455,263	T→A	7.7%	intergenic (‑145/‑23)	mfd ← / → gapB	transcription‑repair coupling factor/glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,455,264	A→C	7.6%	intergenic (‑146/‑22)	mfd ← / → gapB	transcription‑repair coupling factor/glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,460,731	G→C	6.2%	L25V (CTG→GTG)	PP_2153 ←	hypothetical protein
RA	2,460,732	G→C	6.4%	H24Q (CAC→CAG)	PP_2153 ←	hypothetical protein
RA	2,467,909	A→G	7.8%	S267G (AGC→GGC)	queF →	NADPH‑dependent 7‑cyano‑7‑deazaguanine reductase
RA	2,467,955	T→A	9.7%	intergenic (+14/+18)	queF → / ← PP_2161	NADPH‑dependent 7‑cyano‑7‑deazaguanine reductase/hypothetical protein
RA	2,467,956	T→A	8.5%	intergenic (+15/+17)	queF → / ← PP_2161	NADPH‑dependent 7‑cyano‑7‑deazaguanine reductase/hypothetical protein
RA	2,467,957	T→A	8.1%	intergenic (+16/+16)	queF → / ← PP_2161	NADPH‑dependent 7‑cyano‑7‑deazaguanine reductase/hypothetical protein
RA	2,474,148	T→C	10.9%	intergenic (‑53/+127)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,149	C→T	11.7%	intergenic (‑54/+126)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,154	A→G	11.4%	intergenic (‑59/+121)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,155	G→A	17.0%	intergenic (‑60/+120)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,160	G→A	13.6%	intergenic (‑65/+115)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,162	A→G	14.4%	intergenic (‑67/+113)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,475,280	A→G	9.7%	intergenic (‑79/+78)	tal ← / ← dusA	transaldolase/tRNA dihydrouridine synthase DusA
RA	2,475,283	C→A	9.2%	intergenic (‑82/+75)	tal ← / ← dusA	transaldolase/tRNA dihydrouridine synthase DusA
RA	2,475,286	T→G	9.4%	intergenic (‑85/+72)	tal ← / ← dusA	transaldolase/tRNA dihydrouridine synthase DusA
RA	2,475,289	C→T	10.1%	intergenic (‑88/+69)	tal ← / ← dusA	transaldolase/tRNA dihydrouridine synthase DusA
RA	2,478,841	C→A	6.0%	intergenic (+94/+351)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,845	G→C	5.1%	intergenic (+98/+347)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,849	T→G	5.2%	intergenic (+102/+343)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,502,985	A→T	6.7%	S94C (AGC→TGC)	speB →	agmatinase
RA	2,529,028	G→C	8.9%	intergenic (+155/‑252)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,529,029	G→C	9.0%	intergenic (+156/‑251)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,574,849	T→C	5.7%	V9A (GTG→GCG)	PP_2258 →	sensory box protein
RA	2,574,852	A→C	5.7%	D10A (GAC→GCC)	PP_2258 →	sensory box protein
RA	2,582,224	G→A	6.2%	A192A (GCG→GCA)	PP_2263 →	sugar ABC transporter permease
RA	2,584,610	G→T	8.4%	intergenic (+97/+30)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,584,611	C→T	8.8%	intergenic (+98/+29)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,584,612	A→G	8.8%	intergenic (+99/+28)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,584,613	A→C	8.8%	intergenic (+100/+27)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,597,416	G→T	7.8%	E67* (GAA→TAA)	PP_2274 →	hypothetical protein
RA	2,621,328	T→A	6.0%	L48H (CTT→CAT)	PP_2294 →	hypothetical protein
RA	2,621,330	G→C	6.1%	D49H (GAT→CAT) ‡	PP_2294 →	hypothetical protein
RA	2,621,332	T→A	6.0%	D49E (GAT→GAA) ‡	PP_2294 →	hypothetical protein
RA	2,622,205	A→T	6.9%	K80I (AAA→ATA)	PP_5515 →	hypothetical protein
RA	2,623,199	A→G	10.4%	intergenic (+35/‑211)	PP_5517 → / → PP_2295	hypothetical protein/antirestriction protein
RA	2,623,202	C→T	11.1%	intergenic (+38/‑208)	PP_5517 → / → PP_2295	hypothetical protein/antirestriction protein
RA	2,630,157	A→C	5.5%	K372Q (AAG→CAG)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,176	C→G	5.8%	A378G (GCC→GGC)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,650,088	C→A	13.2%	intergenic (+27/+107)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,650,091	T→A	13.5%	intergenic (+30/+104)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,650,094	T→G	13.4%	intergenic (+33/+101)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,662,224	G→A	8.0%	A110T (GCT→ACT)	mmgF →	2‑methylisocitrate lyase
RA	2,673,177	A→C	6.6%	D164A (GAT→GCT)	PP_2340 →	hypothetical protein
RA	2,686,628	C→T	5.5%	G365D (GGC→GAC)	PP_2354 ←	two‑component system sensor histidine kinase/response regulator
RA	2,715,420	C→A	5.7%	A45A (GCC→GCA)	cti →	esterified fatty acid cis/trans isomerase
RA	2,715,421	T→G	5.5%	C46G (TGC→GGC)	cti →	esterified fatty acid cis/trans isomerase
RA	2,719,255	Δ1 bp	7.3%	coding (382/585 nt)	nfuA →	Fe/S biogenesis protein NfuA
RA	2,719,263:1	+T	6.8%	coding (390/585 nt)	nfuA →	Fe/S biogenesis protein NfuA
RA	2,722,068	C→T	100%	Q197* (CAG→TAG)	PP_2382 →	putative transporter
RA	2,759,755	G→A	9.3%	G396G (GGC→GGT)	PP_2413 ←	GGDEF domain‑containing protein
RA	2,759,759	G→A	8.9%	T395I (ACC→ATC)	PP_2413 ←	GGDEF domain‑containing protein
RA	2,759,762	A→C	8.5%	L394R (CTG→CGG)	PP_2413 ←	GGDEF domain‑containing protein
RA	2,759,765	G→T	9.0%	P393Q (CCG→CAG)	PP_2413 ←	GGDEF domain‑containing protein
RA	2,759,768	T→C	9.2%	D392G (GAT→GGT)	PP_2413 ←	GGDEF domain‑containing protein
RA	2,759,772	T→C	9.5%	T391A (ACC→GCC)	PP_2413 ←	GGDEF domain‑containing protein
RA	2,759,938	C→T	6.2%	L335L (CTG→CTA)	PP_2413 ←	GGDEF domain‑containing protein
RA	2,803,123	G→A	11.0%	A503T (GCC→ACC)	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,804,116	G→C	7.1%	G310A (GGG→GCG) ‡	rbsC →	D‑ribose ABC transporter permease
RA	2,804,117	G→C	7.1%	G310G (GGG→GGC) ‡	rbsC →	D‑ribose ABC transporter permease
RA	2,804,118	G→C	7.1%	A311P (GCG→CCG)	rbsC →	D‑ribose ABC transporter permease
RA	2,804,782	C→G	6.1%	R199G (CGC→GGC)	rbsR →	DNA‑binding transcriptional repressor
RA	2,804,786	G→A	6.1%	R200H (CGT→CAT)	rbsR →	DNA‑binding transcriptional repressor
RA	2,804,789	C→G	6.1%	A201G (GCC→GGC)	rbsR →	DNA‑binding transcriptional repressor
RA	2,804,792	T→C	5.5%	M202T (ATG→ACG)	rbsR →	DNA‑binding transcriptional repressor
RA	2,804,796	C→G	5.7%	A203A (GCC→GCG)	rbsR →	DNA‑binding transcriptional repressor
RA	2,822,334	G→A	9.5%	intergenic (+19/‑94)	PP_2475 → / → curA	TetR family transcriptional regulator/NADPH‑dependent curcumin/dihydrocurcumin reductase
RA	2,822,336	T→A	9.5%	intergenic (+21/‑92)	PP_2475 → / → curA	TetR family transcriptional regulator/NADPH‑dependent curcumin/dihydrocurcumin reductase
RA	2,824,517	G→T	18.0%	E44* (GAG→TAG) ‡	PP_2478 →	isoquinoline 1‑oxidoreductase subunit beta
RA	2,824,518	A→C	18.7%	E44A (GAG→GCG) ‡	PP_2478 →	isoquinoline 1‑oxidoreductase subunit beta
RA	2,868,489	G→T	5.6%	intergenic (+28/‑903)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,868,491	C→G	5.7%	intergenic (+30/‑901)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,868,493	A→C	6.3%	intergenic (+32/‑899)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,885,730	C→A	10.7%	R50L (CGC→CTC)	PP_2541 ←	transcriptional factor‑like protein
RA	2,886,149	A→T	7.7%	M282K (ATG→AAG)	PP_5536 ←	conserved protein of unknown function with RHS repeat‑associated core domain
RA	2,891,803	A→T	8.0%	L13Q (CTG→CAG)	PP_2546 ←	membrane protein
RA	2,897,724	T→A	13.9%	intergenic (+98/‑52)	PP_2551 → / → PP_2552	LysR family transcriptional regulator/DOPA decarboxylase
RA	2,897,725	T→A	13.4%	intergenic (+99/‑51)	PP_2551 → / → PP_2552	LysR family transcriptional regulator/DOPA decarboxylase
RA	2,902,351	A→G	6.2%	Y478C (TAT→TGT)	quiC →	3‑dehydroshikimate dehydratase
RA	2,913,051	G→A	9.1%	A691T (GCC→ACC)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,915,588	G→A	6.0%	A1536A (GCG→GCA)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,944,257	G→T	7.8%	S229I (AGT→ATT)	PP_2577 →	paraquat‑inducible protein B
RA	2,944,263	T→C	8.1%	I231T (ATC→ACC)	PP_2577 →	paraquat‑inducible protein B
RA	2,951,334	G→C	11.8%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	12.4%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	12.1%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	9.4%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
JC	2,957,081	Δ84 bp	29.7%	intergenic (+36/‑77)	PP_2588 → / → PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
RA	2,958,799	G→C	10.3%	intergenic (+65/+77)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	3,001,815	C→G	8.1%	A180G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,008,052	A→G	7.3%	M348T (ATG→ACG)	PP_2628 ←	ABC transporter ATP‑binding protein
RA	3,009,575	T→C	8.8%	intergenic (‑481/‑1187)	PP_2628 ← / → PP_2631	ABC transporter ATP‑binding protein/cellulose biosynthesis protein BcsF/YhjT
RA	3,010,966	G→A	5.8%	P9P (CCG→CCA)	bcsG →	endoglucanase
RA	3,010,969	A→C	5.9%	V10V (GTA→GTC)	bcsG →	endoglucanase
RA	3,021,984	A→G	7.7%	E841G (GAG→GGG) ‡	PP_2638 →	cellulose synthase operon protein C
RA	3,021,985	G→C	7.7%	E841D (GAG→GAC) ‡	PP_2638 →	cellulose synthase operon protein C
RA	3,021,986	C→T	7.5%	P842S (CCG→TCG)	PP_2638 →	cellulose synthase operon protein C
RA	3,022,455	A→T	6.8%	Y998F (TAC→TTC)	PP_2638 →	cellulose synthase operon protein C
RA	3,022,464	T→C	6.5%	V1001A (GTG→GCG)	PP_2638 →	cellulose synthase operon protein C
RA	3,030,417	G→C	5.8%	intergenic (+417/‑277)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,420	G→C	5.4%	intergenic (+420/‑274)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,031,004	C→T	7.4%	T104I (ACC→ATC)	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,012	G→A	7.0%	G107R (GGG→AGG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,015	A→G	6.9%	I108V (ATC→GTC)	mgtA →	ATP‑dependent magnesium transporter
RA	3,034,904	C→G	7.2%	L95L (CTG→CTC) ‡	PP_2647 ←	MFS transporter
RA	3,034,906	G→C	8.3%	L95V (CTG→GTG) ‡	PP_2647 ←	MFS transporter
RA	3,034,909	C→T	6.9%	G94S (GGC→AGC)	PP_2647 ←	MFS transporter
RA	3,048,604	G→T	9.0%	intergenic (+59/‑237)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,048,605	A→C	10.2%	intergenic (+60/‑236)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,079,182	G→C	6.9%	A28A (GCC→GCG)	PP_2688 ←	hypothetical protein
RA	3,101,079	T→C	6.0%	V127A (GTC→GCC)	PP_2710 →	hypothetical protein
RA	3,112,855	C→T	5.9%	G98S (GGC→AGC)	PP_2727 ←	C factor cell‑cell signaling protein
RA	3,112,856	A→T	5.9%	L97L (CTT→CTA) ‡	PP_2727 ←	C factor cell‑cell signaling protein
RA	3,112,857	A→G	5.9%	L97P (CTT→CCT) ‡	PP_2727 ←	C factor cell‑cell signaling protein
RA	3,116,170	T→C	8.6%	L303P (CTG→CCG)	PP_2732 →	hypothetical protein
RA	3,141,487	A→C	10.9%	D135A (GAC→GCC)	PP_2757 →	sugar‑binding protein
RA	3,141,493	Δ1 bp	10.0%	coding (410/972 nt)	PP_2757 →	sugar‑binding protein
RA	3,141,507:1	+A	10.4%	coding (424/972 nt)	PP_2757 →	sugar‑binding protein
RA	3,146,611	T→C	6.8%	intergenic (+47/+19)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,614	G→A	8.4%	intergenic (+50/+16)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,156,730	G→A	9.7%	I243I (ATC→ATT)	PP_2772 ←	monooxygenase
RA	3,161,198	C→A	8.5%	P23P (CCC→CCA)	PP_2776 →	homocysteine S‑methyltransferase family protein
RA	3,161,206	A→T	9.4%	Q26L (CAG→CTG)	PP_2776 →	homocysteine S‑methyltransferase family protein
RA	3,161,214	T→G	8.5%	W29G (TGG→GGG)	PP_2776 →	homocysteine S‑methyltransferase family protein
RA	3,166,056	G→C	9.5%	G163A (GGC→GCC)	PP_2780 →	3‑oxoacyl‑ACP synthase
RA	3,177,806	T→C	12.0%	intergenic (‑44/+120)	PP_2788 ← / ← PP_2789	MerR family transcriptional regulator/oxidoreductase
RA	3,177,809	T→C	12.2%	intergenic (‑47/+117)	PP_2788 ← / ← PP_2789	MerR family transcriptional regulator/oxidoreductase
RA	3,177,810	C→T	12.3%	intergenic (‑48/+116)	PP_2788 ← / ← PP_2789	MerR family transcriptional regulator/oxidoreductase
RA	3,177,815	A→G	12.0%	intergenic (‑53/+111)	PP_2788 ← / ← PP_2789	MerR family transcriptional regulator/oxidoreductase
RA	3,177,816	G→A	11.3%	intergenic (‑54/+110)	PP_2788 ← / ← PP_2789	MerR family transcriptional regulator/oxidoreductase
RA	3,177,819	G→A	11.3%	intergenic (‑57/+107)	PP_2788 ← / ← PP_2789	MerR family transcriptional regulator/oxidoreductase
RA	3,192,247	C→T	6.9%	G405D (GGC→GAC)	prr ←	gamma‑aminobutyraldehyde dehydrogenase
RA	3,203,359	C→T	5.8%	A37V (GCG→GTG)	PP_2810 →	hypothetical protein
RA	3,218,661:1	+C	8.8%	intergenic (+44/+39)	oprJ → / ← nfxB	outer membrane protein OprJ/HTH‑type transcriptional regulator NfxB
RA	3,218,668	Δ1 bp	8.3%	intergenic (+51/+32)	oprJ → / ← nfxB	outer membrane protein OprJ/HTH‑type transcriptional regulator NfxB
RA	3,220,889	G→A	10.0%	G41G (GGC→GGT)	PP_5539 ←	hypothetical protein
RA	3,220,893	C→A	10.6%	G40V (GGG→GTG)	PP_5539 ←	hypothetical protein
RA	3,220,896	A→T	10.0%	L39Q (CTG→CAG)	PP_5539 ←	hypothetical protein
RA	3,223,620:1	+C	7.1%	coding (314/681 nt)	PP_2824 ←	TetR family transcriptional regulator
RA	3,223,625	Δ1 bp	6.7%	coding (309/681 nt)	PP_2824 ←	TetR family transcriptional regulator
RA	3,238,145	T→G	9.4%	L195R (CTG→CGG)	PP_2836 →	2‑keto‑3‑deoxyxylonate dehydratase
RA	3,238,147	T→A	9.4%	S196T (TCC→ACC) ‡	PP_2836 →	2‑keto‑3‑deoxyxylonate dehydratase
RA	3,238,149	C→A	9.6%	S196S (TCC→TCA) ‡	PP_2836 →	2‑keto‑3‑deoxyxylonate dehydratase
RA	3,246,437	G→C	9.2%	G231A (GGC→GCC)	PP_2841 →	site‑specific recombinase
RA	3,257,677	T→G	7.6%	A92A (GCA→GCC)	PP_2854 ←	hypothetical protein
RA	3,267,957	T→A	6.6%	L143Q (CTG→CAG)	azoR1 →	FMN‑dependent NADH‑azoreductase
RA	3,267,960	A→G	6.4%	H144R (CAC→CGC) ‡	azoR1 →	FMN‑dependent NADH‑azoreductase
RA	3,267,961	C→T	6.2%	H144H (CAC→CAT) ‡	azoR1 →	FMN‑dependent NADH‑azoreductase
RA	3,267,964	T→A	6.3%	A145A (GCT→GCA)	azoR1 →	FMN‑dependent NADH‑azoreductase
RA	3,277,593	A→C	9.8%	G176G (GGT→GGG)	ampC ←	beta‑lactamase
RA	3,277,599	G→C	9.8%	S174R (AGC→AGG)	ampC ←	beta‑lactamase
RA	3,299,392	C→T	6.2%	Q537* (CAG→TAG)	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,304,630	G→T	7.7%	L422L (CTG→CTT)	cysS →	cysteine‑‑tRNA ligase
RA	3,304,631	A→C	7.7%	K423Q (AAG→CAG)	cysS →	cysteine‑‑tRNA ligase
RA	3,312,687	G→T	15.7%	intergenic (+28/‑134)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,312,688	T→A	16.2%	intergenic (+29/‑133)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,312,689	T→A	17.4%	intergenic (+30/‑132)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,312,690	A→C	18.2%	intergenic (+31/‑131)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,326,394	T→C	9.5%	Y383H (TAC→CAC)	mqo‑III →	malate:quinone oxidoreductase
RA	3,326,400	A→C	9.5%	I385L (ATC→CTC) ‡	mqo‑III →	malate:quinone oxidoreductase
RA	3,326,401	T→C	9.5%	I385T (ATC→ACC) ‡	mqo‑III →	malate:quinone oxidoreductase
RA	3,326,404	G→A	9.4%	G386E (GGG→GAG) ‡	mqo‑III →	malate:quinone oxidoreductase
RA	3,326,405	G→T	9.2%	G386G (GGG→GGT) ‡	mqo‑III →	malate:quinone oxidoreductase
RA	3,328,512	G→C	8.0%	A21A (GCG→GCC)	PP_2927 →	hypothetical protein
RA	3,344,346	C→G	10.2%	Q261H (CAG→CAC)	PP_2941 ←	hypothetical protein
RA	3,352,174	A→G	11.1%	intergenic (+64/+78)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,356,514	T→A	5.1%	T112S (ACG→TCG)	PP_2952 ←	LysR family transcriptional regulator
RA	3,381,431	G→A	7.4%	G26D (GGC→GAC)	PP_2983 →	hypothetical protein
RA	3,385,685	Δ1 bp	6.8%	coding (376/444 nt)	PP_2987 ←	hypothetical protein
RA	3,385,686	G→A	7.0%	A125A (GCC→GCT)	PP_2987 ←	hypothetical protein
RA	3,407,378	G→C	9.4%	V41V (GTG→GTC)	PP_3020 →	serine/threonine protein phosphatase
RA	3,407,379	G→C	9.4%	D42H (GAC→CAC)	PP_3020 →	serine/threonine protein phosphatase
RA	3,420,651	A→T	5.3%	intergenic (‑41/+68)	PP_3035 ← / ← PP_5554	hypothetical protein/hypothetical protein
RA	3,420,652	A→T	5.3%	intergenic (‑42/+67)	PP_3035 ← / ← PP_5554	hypothetical protein/hypothetical protein
RA	3,423,932	G→A	7.8%	R697Q (CGG→CAG)	PP_3038 →	TraC domain‑containing protein
RA	3,424,890	C→G	8.6%	intergenic (+478/‑34)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,430,159	C→T	7.7%	S126L (TCG→TTG)	PP_3045 →	ATP‑dependent protease ClpP
RA	3,451,037	T→C	8.3%	T804A (ACC→GCC)	PP_3069 ←	outer membrane autotransporter
RA	3,451,040	A→G	8.3%	Y803H (TAC→CAC)	PP_3069 ←	outer membrane autotransporter
RA	3,451,042	T→A	8.2%	Q802L (CAG→CTG)	PP_3069 ←	outer membrane autotransporter
RA	3,451,044	C→T	8.1%	V801V (GTG→GTA)	PP_3069 ←	outer membrane autotransporter
RA	3,451,047	G→A	7.8%	G800G (GGC→GGT)	PP_3069 ←	outer membrane autotransporter
RA	3,460,226	Δ1 bp	8.6%	coding (136/1446 nt)	PP_3075 ←	transcriptional regulator
RA	3,460,230:1	+A	8.6%	coding (132/1446 nt)	PP_3075 ←	transcriptional regulator
RA	3,466,055	G→C	11.0%	noncoding (105/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,466,056	A→T	10.8%	noncoding (104/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,466,057	A→T	10.5%	noncoding (103/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,466,058	G→C	10.8%	noncoding (102/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,466,841	T→G	21.2%	intergenic (‑16/+108)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,488,611	T→C	7.4%	D40G (GAC→GGC) ‡	PP_3094 ←	hypothetical protein
RA	3,488,612	C→T	6.0%	D40N (GAC→AAC) ‡	PP_3094 ←	hypothetical protein
RA	3,491,518	C→T	9.3%	D301N (GAT→AAT)	PP_3096 ←	hypothetical protein
RA	3,531,764	A→G	8.9%	C156R (TGC→CGC)	yeaE ←	methylglyoxal reductase
RA	3,534,762	T→G	11.5%	intergenic (+49/‑106)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,767	A→C	10.6%	intergenic (+54/‑101)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,768	C→A	10.4%	intergenic (+55/‑100)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,771	T→G	9.9%	intergenic (+58/‑97)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,772	G→T	9.2%	intergenic (+59/‑96)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,777	C→A	9.0%	intergenic (+64/‑91)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,536,808	A→T	11.5%	D149V (GAC→GTC)	PP_3125 →	Cro/CI family transcriptional regulator
RA	3,552,394	Δ1 bp	5.3%	coding (51/978 nt)	PP_3137 →	group 2 family glycosyl transferase
RA	3,552,399:1	+G	7.0%	coding (56/978 nt)	PP_3137 →	group 2 family glycosyl transferase
RA	3,562,245	C→T	6.5%	G96D (GGT→GAT)	PP_3145 ←	hypothetical protein
RA	3,562,314	A→T	6.8%	V73E (GTG→GAG)	PP_3145 ←	hypothetical protein
RA	3,564,987	A→T	6.8%	intergenic (‑62/+19)	potF‑II ← / ← PP_3148	putrescine‑binding protein/glutamine synthetase
RA	3,564,988	A→T	6.8%	intergenic (‑63/+18)	potF‑II ← / ← PP_3148	putrescine‑binding protein/glutamine synthetase
RA	3,564,989	A→T	6.8%	intergenic (‑64/+17)	potF‑II ← / ← PP_3148	putrescine‑binding protein/glutamine synthetase
RA	3,570,560	G→C	7.1%	A102G (GCC→GGC)	sad‑II ←	NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,587,622:1	+A	7.0%	coding (458/915 nt)	catA‑II →	catechol 1,2‑dioxygenase
RA	3,591,576	T→A	10.4%	L258M (TTG→ATG) ‡	PP_3169 →	membrane protein
RA	3,591,577	T→A	10.4%	L258* (TTG→TAG) ‡	PP_3169 →	membrane protein
RA	3,612,119	A→T	8.0%	I522N (ATT→AAT)	mcoA ←	Mn(II) copper oxidase A
RA	3,614,722	A→C	10.4%	T199P (ACC→CCC) ‡	pet →	protein Pet18
RA	3,614,723	C→A	9.7%	T199N (ACC→AAC) ‡	pet →	protein Pet18
RA	3,614,726	T→G	10.0%	V200G (GTG→GGG) ‡	pet →	protein Pet18
RA	3,614,727	G→T	9.6%	V200V (GTG→GTT) ‡	pet →	protein Pet18
RA	3,615,456	A→G	14.9%	intergenic (+19/‑210)	PP_3186 → / → codB	transcriptional regulator/cytosine transporter
RA	3,625,537	T→A	6.3%	intergenic (‑50/+27)	PP_3195 ← / ← PP_3196	hypothetical protein/nodulation protein d1
RA	3,628,082	C→G	6.6%	intergenic (+11/‑129)	PP_3198 → / → PP_3199	2Fe‑2S ferredoxin/monooxygenase
RA	3,636,403	A→T	12.8%	I111F (ATC→TTC)	PP_3203 →	MFS transporter
RA	3,636,409	T→C	13.9%	L113L (TTG→CTG) ‡	PP_3203 →	MFS transporter
RA	3,636,410	T→A	13.8%	L113* (TTG→TAG) ‡	PP_3203 →	MFS transporter
RA	3,636,411	G→A	13.9%	L113L (TTG→TTA) ‡	PP_3203 →	MFS transporter
RA	3,636,417	A→T	13.9%	E115D (GAA→GAT)	PP_3203 →	MFS transporter
RA	3,638,656	T→G	6.8%	L218V (TTG→GTG)	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,638,660	C→A	7.5%	P219Q (CCG→CAG)	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,638,663	T→G	7.6%	L220R (CTG→CGG)	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,644,948	C→T	9.4%	intergenic (‑43/+23)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,644,951	A→G	9.4%	intergenic (‑46/+20)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,669,948	C→T	8.5%	T81I (ACC→ATC)	fnrB →	Crp/Fnr family transcriptional regulator
RA	3,676,956	A→G	5.9%	intergenic (‑111/‑42)	PP_3241 ← / → PP_3242	hypothetical protein/GGDEF domain‑containing protein
RA	3,678,090	G→C	10.1%	V365L (GTG→CTG)	PP_3242 →	GGDEF domain‑containing protein
RA	3,686,122	T→A	5.7%	L177Q (CTG→CAG)	PP_3251 →	hypothetical protein
RA	3,740,209	C→A	7.7%	L218M (CTG→ATG) ‡	PP_3304 →	Bcr/CflA family multidrug resistance transporter
RA	3,740,210	T→G	7.5%	L218R (CTG→CGG) ‡	PP_3304 →	Bcr/CflA family multidrug resistance transporter
RA	3,745,036	C→T	14.9%	Q108* (CAA→TAA) ‡	paoC →	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA	3,745,037	A→G	14.9%	Q108R (CAA→CGA) ‡	paoC →	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA	3,761,700	G→C	8.1%	A350P (GCC→CCC) ‡	PP_3325 →	ferric siderophore receptor
RA	3,761,701	C→T	8.3%	A350V (GCC→GTC) ‡	PP_3325 →	ferric siderophore receptor
RA	3,761,705	G→A	8.0%	E351E (GAG→GAA)	PP_3325 →	ferric siderophore receptor
RA	3,761,710	A→C	8.0%	H353P (CAC→CCC)	PP_3325 →	ferric siderophore receptor
RA	3,761,713	G→T	8.1%	G354V (GGG→GTG)	PP_3325 →	ferric siderophore receptor
RA	3,761,718	T→C	8.1%	F356L (TTC→CTC)	PP_3325 →	ferric siderophore receptor
RA	3,761,722	A→G	8.0%	E357G (GAG→GGG) ‡	PP_3325 →	ferric siderophore receptor
RA	3,761,723	G→C	8.1%	E357D (GAG→GAC) ‡	PP_3325 →	ferric siderophore receptor
RA	3,762,942	A→T	6.8%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,762,947	A→T	7.0%	I64F (ATC→TTC)	PP_3326 →	hypothetical protein
RA	3,765,101	G→T	6.1%	intergenic (+1621/+54)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,765,109	T→A	6.4%	intergenic (+1629/+46)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,766,263	G→A	9.8%	Q198Q (CAG→CAA)	PP_5599 →	LysR family transcriptional regulator
RA	3,766,264	A→T	9.8%	I199F (ATT→TTT) ‡	PP_5599 →	LysR family transcriptional regulator
RA	3,766,265	T→C	10.0%	I199T (ATT→ACT) ‡	PP_5599 →	LysR family transcriptional regulator
RA	3,779,129	A→T	10.8%	S112T (TCT→ACT)	nikR ←	nickel‑responsive regulator
RA	3,779,130	C→T	10.6%	L111L (TTG→TTA) ‡	nikR ←	nickel‑responsive regulator
RA	3,779,131	A→G	10.6%	L111S (TTG→TCG) ‡	nikR ←	nickel‑responsive regulator
RA	3,779,132	A→T	10.6%	L111M (TTG→ATG) ‡	nikR ←	nickel‑responsive regulator
RA	3,784,244	A→G	6.0%	I190V (ATC→GTC)	nikE →	nickel ABC transporter ATP‑binding protein
RA	3,791,405	C→G	8.0%	G283G (GGC→GGG)	PP_3353 →	sulfatase‑modifying protein
RA	3,791,410	C→G	6.6%	A285G (GCC→GGC)	PP_3353 →	sulfatase‑modifying protein
RA	3,805,005	Δ1 bp	8.3%	coding (154/618 nt)	PP_3363 ←	thymidylate kinase
RA	3,806,760	C→G	6.7%	P459R (CCC→CGC)	PP_3364 →	two‑component system response regulator
RA	3,811,856	G→A	7.1%	A60A (GCG→GCA)	PP_3368 →	MFS transporter
RA	3,811,859	T→C	6.9%	Y61Y (TAT→TAC)	PP_3368 →	MFS transporter
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,718	C→G	16.3%	intergenic (‑85/+13)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,719	A→G	17.2%	intergenic (‑86/+12)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,720	G→C	18.9%	intergenic (‑87/+11)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,721	C→T	15.8%	intergenic (‑88/+10)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,722	C→G	15.6%	intergenic (‑89/+9)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,877,149	A→G	9.1%	T80A (ACC→GCC) ‡	PP_3425 →	RND family transporter MFP subunit
RA	3,877,150	C→G	8.6%	T80S (ACC→AGC) ‡	PP_3425 →	RND family transporter MFP subunit
RA	3,877,151	C→T	8.7%	T80T (ACC→ACT) ‡	PP_3425 →	RND family transporter MFP subunit
RA	3,877,159	C→A	8.7%	A83D (GCC→GAC)	PP_3425 →	RND family transporter MFP subunit
RA	3,886,454	C→T	7.0%	G468D (GGC→GAC)	PP_3430 ←	two‑component system sensor histidine kinase/response regulator
RA	3,886,982	T→C	5.9%	H292R (CAC→CGC)	PP_3430 ←	two‑component system sensor histidine kinase/response regulator
RA	3,893,962	T→A	10.1%	Q366L (CAG→CTG)	yegH ←	putative transporter
RA	3,893,964	G→C	10.1%	S365R (AGC→AGG) ‡	yegH ←	putative transporter
RA	3,893,966	T→A	10.1%	S365C (AGC→TGC) ‡	yegH ←	putative transporter
RA	3,896,098	C→A	6.7%	R216L (CGG→CTG)	PP_3439 ←	AraC family transcriptional regulator
RA	3,898,939	G→A	9.6%	A67V (GCC→GTC)	PP_3441 ←	hypothetical protein
RA	3,914,433	G→C	7.1%	R118R (CGC→CGG)	PP_3454 ←	transcriptional regulator
RA	3,929,797	G→T	25.6%	intergenic (+20/+18)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,929,798	A→T	23.4%	intergenic (+21/+17)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,929,799	A→C	29.4%	intergenic (+22/+16)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,936,285	C→G	5.9%	A24G (GCC→GGC)	PP_3469 →	hypothetical protein
RA	3,949,101:1	+A	9.1%	coding (433/642 nt)	PP_3485 ←	hypothetical protein
RA	3,949,108	Δ1 bp	8.7%	coding (426/642 nt)	PP_3485 ←	hypothetical protein
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,962,576	Δ1 bp	8.6%	coding (774/1152 nt)	PP_3492 →	acyl‑CoA dehydrogenase
RA	3,962,582:1	+T	7.4%	coding (780/1152 nt)	PP_3492 →	acyl‑CoA dehydrogenase
RA	3,975,166	A→C	9.2%	intergenic (+87/+20)	PP_3504 → / ← PP_3505	hypothetical protein/hypothetical protein
RA	3,975,167	A→T	9.2%	intergenic (+88/+19)	PP_3504 → / ← PP_3505	hypothetical protein/hypothetical protein
RA	3,975,168	G→T	9.2%	intergenic (+89/+18)	PP_3504 → / ← PP_3505	hypothetical protein/hypothetical protein
RA	4,002,682	A→G	8.5%	intergenic (+29/‑61)	allE → / → PP_3531	S‑ureidoglycine aminohydrolase/hypothetical protein
RA	4,002,683	C→G	8.3%	intergenic (+30/‑60)	allE → / → PP_3531	S‑ureidoglycine aminohydrolase/hypothetical protein
RA	4,002,684	C→T	8.3%	intergenic (+31/‑59)	allE → / → PP_3531	S‑ureidoglycine aminohydrolase/hypothetical protein
RA	4,004,143	T→C	6.0%	W37R (TGG→CGG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,004,144	G→T	5.4%	W37L (TGG→TTG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,004,147	A→C	5.8%	Q38P (CAG→CCG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,004,148	G→A	5.9%	Q38Q (CAG→CAA) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,017,860	A→G	8.5%	I99V (ATA→GTA)	PP_3545 →	two‑component system sensor histidine kinase/response regulator
RA	4,021,365	C→G	17.1%	*314S (TGA→TCA)	PP_3547 ←	NAD(P)‑binding oxidoreductase
RA	4,044,677	C→G	9.5%	G344A (GGG→GCG) ‡	PP_3566 ←	MFS transporter
RA	4,044,678	C→G	9.3%	G344R (GGG→CGG) ‡	PP_3566 ←	MFS transporter
RA	4,087,488	C→G	6.7%	intergenic (+137/‑289)	PP_3597 → / → PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26
RA	4,118,338	Δ1 bp	7.3%	coding (1028/2256 nt)	PP_3622 →	isoquinoline 1‑oxidoreductase subunit beta
RA	4,133,977	T→A	6.6%	A351A (GCA→GCT) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,133,979	C→G	6.6%	A351P (GCA→CCA) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,133,981	T→A	6.5%	Q350L (CAG→CTG)	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,136,216	G→C	8.4%	G142A (GGC→GCC)	PP_3640 →	AraC family transcriptional regulator
RA	4,136,218	A→C	8.7%	S143R (AGC→CGC)	PP_3640 →	AraC family transcriptional regulator
RA	4,136,223	A→T	8.7%	A144A (GCA→GCT)	PP_3640 →	AraC family transcriptional regulator
RA	4,136,228	G→T	8.0%	R146L (CGG→CTG)	PP_3640 →	AraC family transcriptional regulator
RA	4,136,230	G→C	8.0%	A147P (GCG→CCG)	PP_3640 →	AraC family transcriptional regulator
RA	4,143,205	G→C	7.0%	S446S (TCG→TCC)	PP_3646 →	aldehyde dehydrogenase family protein
RA	4,143,882	T→A	8.1%	intergenic (+35/‑88)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,143,883	T→A	7.1%	intergenic (+36/‑87)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,145,387	T→C	7.8%	I62T (ATC→ACC)	atnUDX →	NUDIX hydrolase
RA	4,149,779	G→C	9.3%	Q77H (CAG→CAC)	PP_3654 →	leucine‑responsive regulatory protein
RA	4,149,781	C→G	9.6%	P78R (CCG→CGG)	PP_3654 →	leucine‑responsive regulatory protein
RA	4,149,783	G→C	9.6%	V79L (GTG→CTG)	PP_3654 →	leucine‑responsive regulatory protein
RA	4,159,143	C→T	14.2%	intergenic (+91/‑118)	PP_3661 → / → PP_3662	membrane protein/hypothetical protein
RA	4,160,661	G→C	10.1%	intergenic (+27/+94)	PP_3662 → / ← PP_3663	hypothetical protein/GGDEF domain‑containing protein
RA	4,160,662	G→C	10.3%	intergenic (+28/+93)	PP_3662 → / ← PP_3663	hypothetical protein/GGDEF domain‑containing protein
RA	4,162,099	T→C	9.3%	intergenic (‑43/+34)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,103	T→A	8.0%	intergenic (‑47/+30)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,104	T→A	8.3%	intergenic (‑48/+29)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,108	G→A	8.3%	intergenic (‑52/+25)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,170,384	A→G	5.4%	T36A (ACC→GCC)	PP_3669 →	LysR family transcriptional regulator
RA	4,175,529	T→C	6.8%	I70I (ATT→ATC)	PP_3676 →	hypothetical protein
RA	4,198,406	C→T	8.5%	L81L (CTG→TTG)	PP_3689 →	serine/threonine protein phosphatase
RA	4,209,214	C→T	6.9%	Y389Y (TAC→TAT)	PP_3692 →	hypothetical protein
RA	4,209,217	T→G	6.8%	A390A (GCT→GCG)	PP_3692 →	hypothetical protein
RA	4,209,220	C→A	6.5%	R391R (CGC→CGA)	PP_3692 →	hypothetical protein
RA	4,209,223	A→G	5.9%	A392A (GCA→GCG)	PP_3692 →	hypothetical protein
RA	4,224,429	C→A	6.0%	intergenic (‑541/+280)	PP_3703 ← / ← PP_3704	hypothetical protein/hypothetical protein
RA	4,224,495	G→A	7.1%	intergenic (‑607/+214)	PP_3703 ← / ← PP_3704	hypothetical protein/hypothetical protein
RA	4,224,501	C→A	8.4%	intergenic (‑613/+208)	PP_3703 ← / ← PP_3704	hypothetical protein/hypothetical protein
RA	4,224,502	T→G	8.3%	intergenic (‑614/+207)	PP_3703 ← / ← PP_3704	hypothetical protein/hypothetical protein
RA	4,252,194	C→A	6.0%	intergenic (‑162/+78)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,202	G→C	6.0%	intergenic (‑170/+70)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,205	G→C	6.1%	intergenic (‑173/+67)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,213	T→G	6.0%	intergenic (‑181/+59)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,217	C→T	6.1%	intergenic (‑185/+55)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,593	A→G	6.1%	D9D (GAT→GAC) ‡	aruR ←	transcriptional regulator AruR
RA	4,257,594	T→A	6.1%	D9V (GAT→GTT) ‡	aruR ←	transcriptional regulator AruR
RA	4,260,118	Δ1 bp	5.6%	coding (195/1059 nt)	PP_3733 ←	hydrolase
RA	4,267,946	A→T	9.6%	intergenic (‑89/+14)	galP‑IV ← / ← PP_3740	porin‑like protein/MFS transporter
RA	4,269,627	T→A	6.2%	intergenic (‑327/‑234)	PP_3740 ← / → mrdA‑I	MFS transporter/transpeptidase
RA	4,274,413	G→T	9.6%	V124L (GTG→TTG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,293,967	C→G	6.6%	D13H (GAC→CAC)	PP_3763 ←	precorrin‑6A synthase
RA	4,305,604	G→A	7.3%	R151C (CGC→TGC)	PP_3777 ←	hypothetical protein
RA	4,305,607	G→A	7.4%	Q150* (CAG→TAG)	PP_3777 ←	hypothetical protein
RA	4,305,608	T→C	7.5%	L149L (CTA→CTG)	PP_3777 ←	hypothetical protein
RA	4,305,611	T→C	7.8%	A148A (GCA→GCG)	PP_3777 ←	hypothetical protein
RA	4,316,022	A→C	9.8%	A35A (GCA→GCC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,025	G→T	8.8%	A36A (GCG→GCT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,338,403	T→C	10.7%	intergenic (+23/+119)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,338,404	G→A	10.9%	intergenic (+24/+118)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,338,414	T→A	7.5%	intergenic (+34/+108)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,338,493	A→T	11.3%	intergenic (+113/+29)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,340,075	A→T	23.4%	intergenic (+60/‑271)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,341,848	A→G	5.6%	I161V (ATC→GTC) ‡	PP_3815 →	polyamine ABC transporter permease
RA	4,341,849	T→A	5.6%	I161N (ATC→AAC) ‡	PP_3815 →	polyamine ABC transporter permease
RA	4,341,850	C→T	5.5%	I161I (ATC→ATT) ‡	PP_3815 →	polyamine ABC transporter permease
RA	4,348,666:1	+C	6.1%	intergenic (‑31/+443)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,348,666:2	+G	6.2%	intergenic (‑31/+443)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,348,705	A→G	40.0%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,353,888	C→T	6.6%	H338H (CAC→CAT)	yrpB →	2‑nitropropane dioxygenase
RA	4,353,889	A→G	6.6%	M339V (ATG→GTG)	yrpB →	2‑nitropropane dioxygenase
RA	4,357,496	G→C	7.8%	V289L (GTG→CTG) ‡	PP_3831 →	hypothetical protein
RA	4,357,497	T→A	7.8%	V289E (GTG→GAG) ‡	PP_3831 →	hypothetical protein
RA	4,357,498	G→C	7.8%	V289V (GTG→GTC) ‡	PP_3831 →	hypothetical protein
RA	4,359,184	A→G	5.8%	L258L (TTG→CTG)	PP_3834 ←	hypothetical protein
RA	4,370,345	T→C	8.5%	A13A (GCT→GCC)	PP_3847 →	LuxR family transcriptional regulator
RA	4,372,569	G→A	6.6%	intergenic (‑1154/‑418)	PP_5636 ← / → PP_3849	hypothetical protein/hemolysin‑type calcium‑binding protein
RA	4,410,778	G→C	6.8%	H121Q (CAC→CAG)	PP_3894 ←	replication protein O
RA	4,425,180	C→A	6.5%	intergenic (‑238/‑562)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,431,526	T→C	7.4%	A64A (GCT→GCC)	PP_3926 →	short‑chain dehydrogenase
RA	4,442,628	C→G	8.2%	intergenic (‑98/+40)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,442,629	C→G	8.2%	intergenic (‑99/+39)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,463,953	A→T	8.5%	*139C (TGA→TGT)	PP_3956 →	hypothetical protein
RA	4,463,956	G→C	8.3%	intergenic (+3/+25)	PP_3956 → / ← betT‑III	hypothetical protein/choline/carnitine/betaine transporter BetTC
RA	4,463,959	A→T	8.2%	intergenic (+6/+22)	PP_3956 → / ← betT‑III	hypothetical protein/choline/carnitine/betaine transporter BetTC
RA	4,470,708	A→G	5.2%	V161A (GTG→GCG)	PP_3961 ←	transporter
RA	4,477,321	T→A	9.4%	Q224L (CAG→CTG)	PP_3968 ←	sensor histidine kinase
RA	4,498,826	C→T	8.4%	R393K (AGA→AAA)	PP_3988 ←	hypothetical protein
RA	4,498,831	C→A	8.1%	K391N (AAG→AAT)	PP_3988 ←	hypothetical protein
RA	4,502,920	G→T	7.9%	M183I (ATG→ATT)	xanP →	xanthine permease
RA	4,502,922	C→G	7.5%	A184G (GCC→GGC)	xanP →	xanthine permease
RA	4,502,924	A→C	7.5%	N185H (AAT→CAT)	xanP →	xanthine permease
RA	4,503,789	C→T	7.3%	intergenic (+38/‑60)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,503,790	A→G	6.8%	intergenic (+39/‑59)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,512,984	T→A	6.3%	I670F (ATC→TTC)	ftsK ←	DNA translocase FtsK
RA	4,519,450	A→G	15.0%	F24L (TTC→CTC)	clpA ←	ATP‑dependent serine protease
RA	4,519,451	C→T	15.0%	E23E (GAG→GAA)	clpA ←	ATP‑dependent serine protease
RA	4,521,849	T→C	8.1%	intergenic (‑112/‑303)	icd ← / → idh	NADP(+)‑specific isocitrate dehydrogenase/isocitrate dehydrogenase
RA	4,530,025	T→A	19.2%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,530,026	T→A	26.1%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,539,106	G→A	8.0%	E197K (GAA→AAA)	PP_4027 →	hypothetical protein
RA	4,576,052	T→A	5.5%	V150D (GTC→GAC)	ybhP‑II →	phosphohydrolase
RA	4,576,054	T→C	5.5%	C151R (TGC→CGC)	ybhP‑II →	phosphohydrolase
RA	4,580,599	C→A	6.5%	Q943H (CAG→CAT) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,580,600	T→A	7.0%	Q943L (CAG→CTG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,580,603	T→A	7.0%	K942M (AAG→ATG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,580,604	T→G	7.0%	K942Q (AAG→CAG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,582,559	A→T	5.6%	L290* (TTG→TAG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,582,560	A→T	5.5%	L290M (TTG→ATG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	51.6%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,057:1	+C	48.4%	intergenic (+140/+75)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,587,695	G→T	12.3%	R40R (CGC→CGA) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,697	G→C	12.2%	R40G (CGC→GGC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,698	G→C	12.2%	S39S (TCC→TCG) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,700	A→C	13.7%	S39A (TCC→GCC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,590,047	C→T	7.7%	G243G (GGC→GGT)	mccB →	methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta
RA	4,597,755	T→A	6.4%	K685M (AAG→ATG) ‡	PP_4071 ←	membrane protein
RA	4,597,756	T→G	6.2%	K685Q (AAG→CAG) ‡	PP_4071 ←	membrane protein
RA	4,605,501	C→G	9.1%	A306G (GCC→GGC)	PP_4077 →	hypothetical protein
RA	4,610,296	C→G	7.3%	I261M (ATC→ATG)	PP_4081 →	type IV/VI secretion system protein
RA	4,632,497	C→T	7.2%	intergenic (+102/+57)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,632,498	G→T	6.8%	intergenic (+103/+56)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,632,499	A→C	7.0%	intergenic (+104/+55)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,632,500	A→G	7.0%	intergenic (+105/+54)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,687,693	C→G	6.5%	I223M (ATC→ATG)	PP_4148 →	ABC transporter permease
RA	4,687,696:1	+A	6.8%	coding (672/1074 nt)	PP_4148 →	ABC transporter permease
RA	4,687,701	Δ1 bp	6.4%	coding (677/1074 nt)	PP_4148 →	ABC transporter permease
RA	4,687,705	C→G	6.7%	V227V (GTC→GTG)	PP_4148 →	ABC transporter permease
RA	4,691,599	A→G	5.3%	D88G (GAC→GGC)	PP_4152 →	hypothetical protein
RA	4,694,425	C→G	6.3%	P767R (CCC→CGC)	PP_4154 →	class 3 aminotransferase
RA	4,694,432	C→T	9.2%	G769G (GGC→GGT)	PP_4154 →	class 3 aminotransferase
RA	4,694,433	T→A	9.0%	Y770N (TAC→AAC) ‡	PP_4154 →	class 3 aminotransferase
RA	4,694,434	A→G	9.2%	Y770C (TAC→TGC) ‡	PP_4154 →	class 3 aminotransferase
RA	4,694,441	C→G	6.8%	R772R (CGC→CGG)	PP_4154 →	class 3 aminotransferase
RA	4,700,758	T→C	6.9%	intergenic (‑71/+79)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,706,187	G→T	5.6%	P102H (CCC→CAC)	PP_4162 ←	membrane protein
RA	4,706,193	C→T	8.3%	G100D (GGC→GAC)	PP_4162 ←	membrane protein
RA	4,713,789	G→T	5.5%	W674L (TGG→TTG)	PP_4171 →	hypothetical protein
RA	4,718,040	T→A	100%	M202K (ATG→AAG)	fabB →	3‑oxoacyl‑ACP synthase
RA	4,721,633	C→T	8.0%	intergenic (‑38/+26)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,634	G→T	7.5%	intergenic (‑39/+25)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,635	A→C	7.9%	intergenic (‑40/+24)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,636	A→G	7.9%	intergenic (‑41/+23)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,725,040	G→A	13.7%	intergenic (+25/+43)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,725,041	A→T	13.7%	intergenic (+26/+42)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,725,042	T→C	13.7%	intergenic (+27/+41)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,740,795	T→G	6.2%	intergenic (+32/+721)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,839	C→G	10.0%	intergenic (+76/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,841	T→A	13.3%	intergenic (+78/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,842	T→A	8.1%	intergenic (+79/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,844	C→G	10.4%	intergenic (+81/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,744,600	A→C	7.5%	S76A (TCC→GCC)	PP_4198 ←	OmpA family protein
RA	4,744,607	G→T	6.8%	G73G (GGC→GGA)	PP_4198 ←	OmpA family protein
RA	4,758,424	C→G	5.1%	V454L (GTG→CTG)	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,767,818	C→T	8.6%	intergenic (+32/+37)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,767,819	A→G	8.3%	intergenic (+33/+36)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,772,222	G→T	7.2%	R2349S (CGC→AGC)	pvdD ←	non‑ribosomal peptide synthetase
RA	4,779,407	C→A	7.9%	intergenic (‑141/+20)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,779,408	A→T	7.8%	intergenic (‑142/+19)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,779,409	T→G	7.4%	intergenic (‑143/+18)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,780,121	A→G	6.2%	V2398A (GTG→GCG) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,780,122	C→T	6.1%	V2398M (GTG→ATG) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,780,954	C→T	7.0%	A2120A (GCG→GCA)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,780,957	T→C	7.0%	Q2119Q (CAA→CAG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,780,963	C→T	7.2%	L2117L (TTG→TTA) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,780,964	A→T	6.9%	L2117* (TTG→TAG) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,780,965	A→G	6.9%	L2117L (TTG→CTG) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,780,971	G→A	6.9%	L2115L (CTG→TTG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,780,974	A→G	6.9%	C2114R (TGC→CGC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,785,336	G→A	5.3%	H660Y (CAC→TAC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,796,604	A→G	15.5%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,612	C→T	15.4%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,614	G→C	15.4%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,617	G→C	10.9%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	10.5%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	11.6%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,805,670	A→T	5.1%	V741D (GTC→GAC)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,817,887	A→G	8.7%	K195E (AAG→GAG)	PP_4242 →	conserved protein of unknown function with Rhs repeat‑associated core domain
RA	4,817,897	A→T	5.9%	K198I (AAA→ATA) ‡	PP_4242 →	conserved protein of unknown function with Rhs repeat‑associated core domain
RA	4,817,898	A→T	5.9%	K198N (AAA→AAT) ‡	PP_4242 →	conserved protein of unknown function with Rhs repeat‑associated core domain
RA	4,817,899	G→T	6.9%	G199C (GGT→TGT)	PP_4242 →	conserved protein of unknown function with Rhs repeat‑associated core domain
RA	4,817,908	C→T	5.6%	R202C (CGT→TGT)	PP_4242 →	conserved protein of unknown function with Rhs repeat‑associated core domain
RA	4,821,673	G→A	6.0%	Q3173* (CAA→TAA)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,823,340	C→G	8.2%	G2617A (GGC→GCC) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,823,341	C→G	8.2%	G2617R (GGC→CGC) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,824,151	A→G	5.7%	F2347L (TTC→CTC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,824,152	C→T	5.7%	E2346E (GAG→GAA)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,833,370	C→G	5.5%	G229R (GGG→CGG)	PP_4246 ←	substrate‑binding protein
RA	4,833,371	C→G	5.5%	P228P (CCG→CCC)	PP_4246 ←	substrate‑binding protein
RA	4,837,280	C→T	8.0%	A429A (GCC→GCT)	ccoN‑I →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,837,281	A→G	8.1%	S430G (AGC→GGC)	ccoN‑I →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,837,288	C→A	7.3%	P432Q (CCA→CAA)	ccoN‑I →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,837,292	C→T	7.0%	G433G (GGC→GGT)	ccoN‑I →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,842,896	Δ1 bp	15.1%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,842,904:1	+G	19.0%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,858,432	G→A	7.7%	noncoding (62/97 nt) noncoding (63/97 nt)	PP_mr49 ← PP_mr50 ←	Bacteria_small_SRP ncRNA Bacteria_large_SRP ncRNA
RA	4,896,399	T→C	12.2%	intergenic (+32/‑176)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,899,253	T→G	7.9%	I72I (ATA→ATC)	PP_4307 ←	DMT superfamily permease
RA	4,899,256	C→A	8.2%	A71A (GCG→GCT)	PP_4307 ←	DMT superfamily permease
RA	4,902,585	C→T	6.2%	A167V (GCC→GTC)	PP_4310 →	hydantoin racemase
RA	4,906,463	A→T	8.6%	L112Q (CTG→CAG)	PP_4315 ←	epimerase
RA	4,906,466	A→T	8.2%	L111Q (CTG→CAG)	PP_4315 ←	epimerase
RA	4,907,307	T→C	6.6%	H161R (CAC→CGC)	PP_4316 ←	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	4,930,141	G→C	5.6%	Q11E (CAG→GAG)	cheA ←	chemotaxis histidine kinase CheA
RA	4,930,142	G→C	5.5%	L10L (CTC→CTG)	cheA ←	chemotaxis histidine kinase CheA
RA	4,935,907	A→G	5.9%	M228T (ATG→ACG)	flhA ←	flagellar export pore protein
RA	4,935,926	C→T	5.9%	G222S (GGT→AGT)	flhA ←	flagellar export pore protein
RA	4,944,738	C→T	5.5%	intergenic (+98/+700)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,944,740	C→T	6.4%	intergenic (+100/+698)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,944,741	A→G	6.5%	intergenic (+101/+697)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,944,743	A→G	6.5%	intergenic (+103/+695)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,948,658	T→C	5.2%	T64A (ACC→GCC)	fliO ←	flagellar protein FliO
RA	4,948,661	Δ1 bp	5.5%	coding (187/435 nt)	fliO ←	flagellar protein FliO
RA	4,948,667:1	+A	5.6%	coding (181/435 nt)	fliO ←	flagellar protein FliO
RA	4,950,953	T→G	7.5%	intergenic (‑103/+54)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,950,972	T→G	11.1%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,950,973	C→A	9.5%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,963,027	G→C	5.4%	L210V (CTG→GTG)	fleS ←	two‑component system sensor histidine kinase FleS
RA	4,963,028	G→C	5.4%	H209Q (CAC→CAG)	fleS ←	two‑component system sensor histidine kinase FleS
RA	4,963,305	C→A	5.6%	G117V (GGC→GTC)	fleS ←	two‑component system sensor histidine kinase FleS
RA	4,965,245	T→C	9.4%	D38G (GAC→GGC)	fleQ ←	transcriptional regulator FleQ
RA	4,968,140	A→G	9.7%	intergenic (‑36/+39)	PP_4377 ← / ← fliC	flagellin FlaG/flagellin
RA	4,968,143	T→G	9.7%	intergenic (‑39/+36)	PP_4377 ← / ← fliC	flagellin FlaG/flagellin
RA	4,968,144	T→C	9.7%	intergenic (‑40/+35)	PP_4377 ← / ← fliC	flagellin FlaG/flagellin
RA	4,968,145	G→A	9.7%	intergenic (‑41/+34)	PP_4377 ← / ← fliC	flagellin FlaG/flagellin
RA	4,968,146	C→A	9.6%	intergenic (‑42/+33)	PP_4377 ← / ← fliC	flagellin FlaG/flagellin
RA	4,968,149	C→T	9.3%	intergenic (‑45/+30)	PP_4377 ← / ← fliC	flagellin FlaG/flagellin
RA	4,969,993	T→G	10.1%	T84P (ACT→CCT)	fliC ←	flagellin
RA	4,970,004	C→A	10.2%	G80V (GGC→GTC)	fliC ←	flagellin
RA	4,976,212	C→G	7.4%	D187H (GAC→CAC)	flgJ ←	peptidoglycan hydrolase FlgJ
RA	4,978,420	G→T	6.9%	S60R (AGC→AGA)	flgH ←	flagellar L‑ring protein
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,991,234	A→C	7.7%	intergenic (‑103/+126)	PP_4399 ← / ← bkdR	glutamine synthetase/Bkd operon transcriptional regulator
RA	4,991,235	G→A	7.7%	intergenic (‑104/+125)	PP_4399 ← / ← bkdR	glutamine synthetase/Bkd operon transcriptional regulator
RA	4,991,238	T→C	7.9%	intergenic (‑107/+122)	PP_4399 ← / ← bkdR	glutamine synthetase/Bkd operon transcriptional regulator
RA	4,991,239	G→T	7.4%	intergenic (‑108/+121)	PP_4399 ← / ← bkdR	glutamine synthetase/Bkd operon transcriptional regulator
RA	4,995,522	C→G	6.9%	R396G (CGC→GGC) ‡	bkdB →	branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA	4,995,523	G→C	7.6%	R396P (CGC→CCC) ‡	bkdB →	branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA	4,995,524	C→G	6.5%	R396R (CGC→CGG) ‡	bkdB →	branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA	5,009,711	G→A	6.0%	intergenic (+71/‑101)	PP_4412 → / → PP_4413	hypothetical protein/hypothetical protein
RA	5,009,718:1	+A	6.2%	intergenic (+78/‑94)	PP_4412 → / → PP_4413	hypothetical protein/hypothetical protein
RA	5,009,722	T→G	5.9%	intergenic (+82/‑90)	PP_4412 → / → PP_4413	hypothetical protein/hypothetical protein
RA	5,055,530	C→A	8.4%	G266V (GGG→GTG)	gsiC ←	glutathione ABC transporter permease
RA	5,059,500	Δ1 bp	8.2%	coding (1334/1581 nt)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,059,505	A→T	7.9%	N443K (AAT→AAA)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,059,508:1	+G	8.3%	coding (1326/1581 nt)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,061,134	G→A	8.5%	intergenic (‑301/‑190)	PP_4458 ← / → PP_4459	opine ABC transporter substrate‑binding protein/transposase
RA	5,070,511	G→A	5.0%	R126C (CGC→TGC)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,077,234	G→T	6.0%	intergenic (+29/+79)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,077,237	A→C	6.2%	intergenic (+32/+76)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,078,877	G→C	6.8%	intergenic (‑122/+275)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,079,126	T→A	13.1%	intergenic (‑371/+26)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,079,129	T→A	11.5%	intergenic (‑374/+23)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,082,651	C→G	5.8%	A539P (GCG→CCG)	alaS ←	alanine‑‑tRNA ligase
RA	5,082,652	A→T	5.9%	G538G (GGT→GGA) ‡	alaS ←	alanine‑‑tRNA ligase
RA	5,082,653	C→G	7.2%	G538A (GGT→GCT) ‡	alaS ←	alanine‑‑tRNA ligase
RA	5,092,539	G→A	9.1%	intergenic (‑235/+102)	astC ← / ← PP_4482	acetylornithine aminotransferase/AraC family transcriptional regulator
RA	5,100,545	A→G	5.9%	F361S (TTT→TCT) ‡	phhR ←	sigma‑54 dependent transcriptional regulator
RA	5,100,546	A→T	5.4%	F361I (TTT→ATT) ‡	phhR ←	sigma‑54 dependent transcriptional regulator
RA	5,100,547	C→T	5.9%	E360E (GAG→GAA)	phhR ←	sigma‑54 dependent transcriptional regulator
RA	5,103,088	A→T	6.7%	intergenic (+20/‑170)	phhB → / → PP_5694	pterin‑4‑alpha‑carbinolamine dehydratase/hypothetical protein
RA	5,122,522	G→C	5.5%	Y76* (TAC→TAG) ‡	PP_4508 ←	AraC family transcriptional regulator
RA	5,122,523	T→C	5.5%	Y76C (TAC→TGC) ‡	PP_4508 ←	AraC family transcriptional regulator
RA	5,140,859	C→T	5.9%	A235T (GCC→ACC)	PP_4525 ←	LysR family transcriptional regulator
RA	5,149,436	C→G	7.2%	intergenic (‑422/+26)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,437	T→G	7.2%	intergenic (‑423/+25)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,440	C→A	8.4%	intergenic (‑426/+22)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,441	C→G	7.3%	intergenic (‑427/+21)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,444	C→T	7.6%	intergenic (‑430/+18)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,151,116	A→C	6.4%	F117C (TTC→TGC)	PP_4535 ←	hypothetical protein
RA	5,173,244	T→C	9.4%	intergenic (‑285/+47)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,247	G→C	9.4%	intergenic (‑288/+44)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,248	G→C	9.2%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,251	G→A	9.4%	intergenic (‑292/+40)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,182,059	G→T	11.5%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,065	T→G	17.4%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,066	C→A	12.9%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,072	A→C	11.9%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,992	A→T	8.2%	F248I (TTC→ATC)	PP_4563 ←	hypothetical protein
RA	5,182,997	T→A	8.8%	K246M (AAG→ATG) ‡	PP_4563 ←	hypothetical protein
RA	5,182,998	T→A	7.9%	K246* (AAG→TAG) ‡	PP_4563 ←	hypothetical protein
RA	5,183,003	A→T	8.6%	I244N (ATC→AAC)	PP_4563 ←	hypothetical protein
RA	5,194,887	T→G	7.1%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,194,888	C→A	7.0%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,197,917	T→C	6.4%	N223D (AAC→GAC)	PP_4578 ←	MFS transporter
RA	5,212,475	G→A	11.0%	intergenic (+39/+55)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,227,419	C→T	7.1%	G547D (GGC→GAC)	PP_4606 ←	ferric siderophore receptor
RA	5,233,543	T→C	9.9%	V136A (GTC→GCC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,233,546	A→T	9.1%	D137V (GAC→GTC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,233,549	G→A	9.0%	G138D (GGC→GAC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,239,884	G→A	18.4%	A144V (GCG→GTG)	ldh ←	leucine dehydrogenase
RA	5,239,889	T→C	19.7%	P142P (CCA→CCG)	ldh ←	leucine dehydrogenase
RA	5,241,709	A→G	8.3%	L55L (TTG→CTG)	hmgC ←	maleylacetoacetate isomerase
RA	5,241,714:1	+C	8.3%	coding (158/633 nt)	hmgC ←	maleylacetoacetate isomerase
RA	5,241,719	Δ1 bp	8.6%	coding (153/633 nt)	hmgC ←	maleylacetoacetate isomerase
RA	5,241,725	C→T	8.5%	Q49Q (CAG→CAA)	hmgC ←	maleylacetoacetate isomerase
RA	5,244,128	A→T	6.8%	A118A (GCT→GCA)	hmgA ←	homogentisate 1,2‑dioxygenase
RA	5,244,133	T→A	6.3%	M117L (ATG→TTG)	hmgA ←	homogentisate 1,2‑dioxygenase
RA	5,249,903	T→C	6.9%	intergenic (‑82/+95)	PP_4624 ← / ← cidB	alpha/beta family hydrolase/holin CidA anti‑holin regulator
RA	5,263,966	A→G	9.5%	V94A (GTG→GCG)	zinU ←	P‑loop guanosine triphosphatase‑dependent zinc chaperone
RA	5,263,969	A→T	7.8%	L93Q (CTG→CAG)	zinU ←	P‑loop guanosine triphosphatase‑dependent zinc chaperone
RA	5,263,972	C→T	7.4%	R92H (CGC→CAC)	zinU ←	P‑loop guanosine triphosphatase‑dependent zinc chaperone
RA	5,269,313	G→C	5.9%	L342L (CTC→CTG) ‡	radA ←	DNA repair enzyme
RA	5,269,314	A→T	6.4%	L342H (CTC→CAC) ‡	radA ←	DNA repair enzyme
RA	5,269,315	G→C	5.9%	L342V (CTC→GTC) ‡	radA ←	DNA repair enzyme
RA	5,289,590	G→C	5.3%	L246V (CTC→GTC)	PP_4663 ←	transmembrane protein
RA	5,293,713	G→A	12.3%	T225I (ACC→ATC)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,293,717	A→C	9.4%	C224G (TGC→GGC)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,293,719	A→T	9.4%	I223N (ATT→AAT)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,293,721	G→T	9.5%	A222A (GCC→GCA)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,293,725	T→C	9.5%	D221G (GAT→GGT)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,297,191	A→C	8.7%	S58A (TCG→GCG)	TpbB ←	diguanylate cyclase
RA	5,297,192	G→C	8.6%	R57R (CGC→CGG)	TpbB ←	diguanylate cyclase
RA	5,297,195	G→C	8.6%	A56A (GCC→GCG) ‡	TpbB ←	diguanylate cyclase
RA	5,297,196	G→T	8.6%	A56D (GCC→GAC) ‡	TpbB ←	diguanylate cyclase
RA	5,300,287	C→T	5.8%	R1162R (CGG→CGA) ‡	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,300,288	C→T	6.1%	R1162Q (CGG→CAG) ‡	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,300,297	A→G	6.2%	L1159S (TTG→TCG) ‡	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,300,298	A→G	6.1%	L1159L (TTG→CTG) ‡	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,332,245	C→G	6.8%	intergenic (+28/‑21)	dksA → / → gluQ	RNA polymerase‑binding transcription factor DksA/glutamyl‑Q tRNA(Asp) synthetase
RA	5,336,185	C→G	5.5%	A872G (GCC→GGC)	PP_4695 →	two‑component system sensor histidine kinase
RA	5,336,191	T→C	5.3%	V874A (GTG→GCG)	PP_4695 →	two‑component system sensor histidine kinase
RA	5,338,050	C→G	6.4%	intergenic (+57/‑227)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,338,053	C→G	6.3%	intergenic (+60/‑224)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,339,889	C→T	6.0%	L373L (CTG→TTG)	pcnB →	poly(A) polymerase
RA	5,339,897	C→G	6.1%	R375R (CGC→CGG)	pcnB →	poly(A) polymerase
RA	5,339,900	C→G	6.1%	R376R (CGC→CGG)	pcnB →	poly(A) polymerase
RA	5,339,901	A→C	5.6%	S377R (AGC→CGC)	pcnB →	poly(A) polymerase
RA	5,339,908	A→G	5.7%	K379R (AAG→AGG)	pcnB →	poly(A) polymerase
RA	5,349,030	A→T	6.5%	T502S (ACC→TCC)	PP_4704 →	hypothetical protein
RA	5,354,658	T→C	5.6%	G11G (GGA→GGG)  noncoding (17/97 nt)	rpsO ← PP_mr54 ←	30S ribosomal protein S15 S15 regulatory region
RA	5,354,671	G→A	6.2%	T7I (ACC→ATC)  noncoding (4/97 nt)	rpsO ← PP_mr54 ←	30S ribosomal protein S15 S15 regulatory region
RA	5,356,023	G→A	5.8%	V27V (GTC→GTT)	rbfA ←	ribosome‑binding factor A
RA	5,361,071	A→T	5.4%	intergenic (‑78/+23)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,361,072	A→T	5.4%	intergenic (‑79/+22)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,368,670	G→T	6.4%	R14S (CGC→AGC)	greA ←	transcription elongation factor GreA
RA	5,368,671	A→C	6.1%	A13A (GCT→GCG)	greA ←	transcription elongation factor GreA
RA	5,372,692	T→G	6.8%	K160Q (AAG→CAG)	carA ←	carbamoyl‑phosphate synthase small subunit
RA	5,372,694	G→C	7.2%	A159G (GCC→GGC)	carA ←	carbamoyl‑phosphate synthase small subunit
RA	5,372,696	C→A	7.0%	L158L (CTG→CTT)	carA ←	carbamoyl‑phosphate synthase small subunit
RA	5,373,850	T→G	8.8%	E150D (GAA→GAC)	dapB ←	4‑hydroxy‑tetrahydrodipicolinate reductase
RA	5,373,861	C→A	9.1%	V147F (GTC→TTC)	dapB ←	4‑hydroxy‑tetrahydrodipicolinate reductase
RA	5,381,267	T→C	5.4%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,268	T→A	5.3%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,388,233	A→T	5.8%	E581D (GAA→GAT)	dld2 →	D‑lactate dehydrogenase
RA	5,420,450	A→G	5.4%	W217R (TGG→CGG)	PP_4760 ←	alcohol dehydrogenase
RA	5,420,452	G→C	5.5%	A216G (GCC→GGC)	PP_4760 ←	alcohol dehydrogenase
RA	5,420,454	C→T	5.6%	P215P (CCG→CCA)	PP_4760 ←	alcohol dehydrogenase
RA	5,427,281	G→A	8.8%	I274I (ATC→ATT)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,427,288	T→A	8.6%	D272V (GAC→GTC)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,428,065	A→T	7.9%	L13Q (CTG→CAG)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,446,203	T→G	6.0%	A116A (GCT→GCG)	thiE →	thiamine‑phosphate synthase
RA	5,473,809	T→A	5.6%	N329I (AAC→ATC) ‡	proA ←	gamma‑glutamyl phosphate reductase
RA	5,473,810	T→C	5.6%	N329D (AAC→GAC) ‡	proA ←	gamma‑glutamyl phosphate reductase
RA	5,513,985	T→G	8.9%	Y204D (TAC→GAC) ‡	urtE →	ABC transporter ATP‑binding protein
RA	5,513,986	A→T	8.9%	Y204F (TAC→TTC) ‡	urtE →	ABC transporter ATP‑binding protein
RA	5,513,987	C→A	9.8%	Y204* (TAC→TAA) ‡	urtE →	ABC transporter ATP‑binding protein
RA	5,518,734	T→A	6.2%	K59N (AAA→AAT) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,735	T→A	5.2%	K59I (AAA→ATA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,736	T→A	5.2%	K59* (AAA→TAA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,522,791	T→A	5.9%	intergenic (+25/+15)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,522,792	T→A	5.9%	intergenic (+26/+14)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,522,793	T→A	5.9%	intergenic (+27/+13)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,537,075	G→C	17.7%	intergenic (+52/+51)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,538,533	T→A	5.2%	intergenic (+23/+98)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,540,881	G→T	6.2%	C35* (TGC→TGA)	PP_4872 ←	hypothetical protein
RA	5,543,124	A→C	7.6%	A45A (GCT→GCG)	rplI ←	50S ribosomal protein L9
RA	5,543,129	G→A	7.3%	L44L (CTG→TTG)	rplI ←	50S ribosomal protein L9
RA	5,543,130	G→C	6.9%	N43K (AAC→AAG) ‡	rplI ←	50S ribosomal protein L9
RA	5,543,131	T→C	7.2%	N43S (AAC→AGC) ‡	rplI ←	50S ribosomal protein L9
RA	5,543,136	G→T	7.2%	A41A (GCC→GCA)	rplI ←	50S ribosomal protein L9
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,555,648	T→A	10.7%	intergenic (‑124/+47)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,555,649	A→T	10.2%	intergenic (‑125/+46)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,555,650	T→A	10.2%	intergenic (‑126/+45)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,563,575	A→T	8.8%	Y224* (TAT→TAA)	hflX ←	GTPase HflX
RA	5,566,413	T→A	9.2%	Q358L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,416	T→A	8.2%	Q357L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,567,179	A→T	6.1%	L103M (TTG→ATG)	mutL ←	DNA mismatch repair protein MutL
RA	5,592,255	C→T	5.7%	D67D (GAC→GAT)	PP_4920 →	lipoprotein
RA	5,594,153	T→C	5.6%	intergenic (‑100/+45)	PP_4921 ← / ← thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
RA	5,597,888	G→A	8.2%	P463P (CCG→CCA)	PP_4923 →	outer membrane efflux protein
RA	5,597,890	A→G	7.6%	D464G (GAC→GGC) ‡	PP_4923 →	outer membrane efflux protein
RA	5,597,891	C→T	7.6%	D464D (GAC→GAT) ‡	PP_4923 →	outer membrane efflux protein
RA	5,597,893	T→C	7.6%	L465P (CTG→CCG)	PP_4923 →	outer membrane efflux protein
RA	5,608,994	G→C	5.2%	R202G (CGC→GGC)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,610,644	C→T	6.8%	S20L (TCG→TTG) ‡	emrE →	small multidrug resistance protein
RA	5,610,645	G→C	6.5%	S20S (TCG→TCC) ‡	emrE →	small multidrug resistance protein
RA	5,610,648	G→C	7.6%	M21I (ATG→ATC)	emrE →	small multidrug resistance protein
RA	5,610,649	A→G	6.7%	K22E (AAG→GAG)	emrE →	small multidrug resistance protein
RA	5,612,015	C→G	10.5%	R337G (CGC→GGC) ‡	PP_4931 →	hypothetical protein
RA	5,612,016	G→C	10.0%	R337P (CGC→CCC) ‡	PP_4931 →	hypothetical protein
RA	5,612,017	C→G	10.0%	R337R (CGC→CGG) ‡	PP_4931 →	hypothetical protein
RA	5,614,048	A→G	7.3%	intergenic (+30/+52)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,614,055	A→T	6.5%	intergenic (+37/+45)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,614,056	A→T	7.3%	intergenic (+38/+44)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,624,668	G→A	7.7%	Q365* (CAA→TAA)	PP_4943 ←	glycosyl transferase
RA	5,631,113	G→A	7.3%	G215S (GGC→AGC)	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,631,116	A→T	7.1%	K216* (AAG→TAG) ‡	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,631,117	A→T	7.0%	K216M (AAG→ATG) ‡	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,631,120	T→C	7.1%	L217P (CTG→CCG)	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,650,674	A→C	5.3%	H173Q (CAT→CAG) ‡	PP_4959 ←	diguanylate cyclase
RA	5,650,675	T→A	5.2%	H173L (CAT→CTT) ‡	PP_4959 ←	diguanylate cyclase
RA	5,650,676	G→T	5.6%	H173N (CAT→AAT) ‡	PP_4959 ←	diguanylate cyclase
RA	5,651,374	T→G	13.1%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,377	C→A	12.3%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,655,626:1	+A	9.5%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,631	T→G	10.4%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	12.1%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,641	Δ1 bp	9.3%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
JC	5,681,415	+CGGG	94.7%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,684,794	C→T	5.1%	S700N (AGC→AAC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,804	G→C	6.0%	R697G (CGC→GGC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,806	C→T	7.0%	R696H (CGC→CAC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,809	T→A	6.2%	D695V (GAC→GTC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,812	A→G	7.1%	V694A (GTG→GCG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,814	G→C	7.5%	A693A (GCC→GCG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,824	A→G	5.3%	V690A (GTT→GCT)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,685,900	G→C	7.6%	P331P (CCC→CCG) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,685,902	G→C	7.8%	P331A (CCC→GCC) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,685,909	G→C	7.7%	R328R (CGC→CGG) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,685,911	G→C	8.0%	R328G (CGC→GGC) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,689,726	A→T	5.6%	P56P (CCT→CCA)	pilH ←	twitching motility protein PilH
RA	5,697,314	C→A	6.9%	intergenic (+24/‑53)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,697,318	T→G	7.4%	intergenic (+28/‑49)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,701,220	G→C	9.2%	intergenic (+18/‑45)	phaA → / → phaB	poly(3‑hydroxyalkanoate) polymerase/poly(3‑hydroxyalkanoate) depolymerase
RA	5,701,222	C→G	9.2%	intergenic (+20/‑43)	phaA → / → phaB	poly(3‑hydroxyalkanoate) polymerase/poly(3‑hydroxyalkanoate) depolymerase
RA	5,701,227	C→G	9.2%	intergenic (+25/‑38)	phaA → / → phaB	poly(3‑hydroxyalkanoate) polymerase/poly(3‑hydroxyalkanoate) depolymerase
RA	5,701,229	G→C	9.7%	intergenic (+27/‑36)	phaA → / → phaB	poly(3‑hydroxyalkanoate) polymerase/poly(3‑hydroxyalkanoate) depolymerase
RA	5,709,377	G→C	6.0%	R1132P (CGG→CCG) ‡	PP_5009 →	hypothetical protein
RA	5,709,378	G→C	6.0%	R1132R (CGG→CGC) ‡	PP_5009 →	hypothetical protein
RA	5,709,381	C→T	5.9%	V1133V (GTC→GTT)	PP_5009 →	hypothetical protein
RA	5,719,164	A→G	6.2%	E621E (GAA→GAG)	PP_5020 →	methyl‑accepting chemotaxis protein
RA	5,732,257	C→G	5.1%	S100T (AGC→ACC)	hutI ←	imidazolonepropionase
RA	5,732,263	A→G	6.3%	I98T (ATC→ACC)	hutI ←	imidazolonepropionase
RA	5,732,266	C→T	6.6%	G97D (GGT→GAT)	hutI ←	imidazolonepropionase
RA	5,740,457	G→A	12.5%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,467	T→G	23.7%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,470	A→T	14.3%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,471	A→T	14.3%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,474	C→A	12.7%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,484	T→C	13.5%	intergenic (+49/+22)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,743,331	G→A	9.7%	intergenic (‑164/+83)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,335	T→C	8.7%	intergenic (‑168/+79)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,750,790	T→A	5.7%	D258V (GAC→GTC)	thiI ←	tRNA sulfurtransferase
RA	5,753,485	T→G	8.3%	intergenic (+46/‑320)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,753,486	C→A	7.2%	intergenic (+47/‑319)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,759,516	C→T	10.8%	intergenic (+125/+31)	trmL → / ← secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
RA	5,759,518	G→T	10.4%	intergenic (+127/+29)	trmL → / ← secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
RA	5,759,519	A→C	12.2%	intergenic (+128/+28)	trmL → / ← secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
RA	5,759,521	A→G	10.6%	intergenic (+130/+26)	trmL → / ← secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
RA	5,786,987	T→C	8.5%	S134P (TCG→CCG) ‡	trxC →	thioredoxin
RA	5,786,988	C→A	8.5%	S134* (TCG→TAG) ‡	trxC →	thioredoxin
RA	5,786,991	T→G	9.6%	L135R (CTG→CGG) ‡	trxC →	thioredoxin
RA	5,786,992	G→A	9.6%	L135L (CTG→CTA) ‡	trxC →	thioredoxin
RA	5,791,128	A→T	6.0%	I197N (ATC→AAC) ‡	hemE ←	uroporphyrinogen decarboxylase
RA	5,791,129	T→C	5.9%	I197V (ATC→GTC) ‡	hemE ←	uroporphyrinogen decarboxylase
RA	5,797,312	G→T	8.9%	R196R (CGC→CGA)	gltB ←	L‑glutamate synthase subunit alpha
RA	5,815,531	C→T	7.6%	intergenic (+15/+76)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,815,536	G→T	6.7%	intergenic (+20/+71)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,815,539	A→C	7.9%	intergenic (+23/+68)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,815,544	A→G	8.2%	intergenic (+28/+63)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,824,712	T→G	5.9%	intergenic (+136/+38)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,713	T→A	5.5%	intergenic (+137/+37)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,714	T→A	5.9%	intergenic (+138/+36)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,715	C→A	5.9%	intergenic (+139/+35)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,827,657	G→A	8.5%	A190A (GCG→GCA)	mtgA →	monofunctional biosynthetic peptidoglycan transglycosylase
RA	5,827,658	G→C	8.1%	V191L (GTG→CTG) ‡	mtgA →	monofunctional biosynthetic peptidoglycan transglycosylase
RA	5,827,659	T→C	9.6%	V191A (GTG→GCG) ‡	mtgA →	monofunctional biosynthetic peptidoglycan transglycosylase
RA	5,831,878	A→C	15.8%	V89G (GTC→GGC)	ftsY ←	signal recognition particle protein translocation receptor GTPase
RA	5,857,372	G→T	5.2%	E433D (GAG→GAT)	PP_5133 →	membrane protein
RA	5,867,733:1	+C	6.1%	intergenic (‑28/+24)	thyA ← / ← lgt	thymidylate synthase/prolipoprotein diacylglyceryl transferase
RA	5,867,738	Δ1 bp	6.1%	intergenic (‑33/+19)	thyA ← / ← lgt	thymidylate synthase/prolipoprotein diacylglyceryl transferase
RA	5,881,396	C→T	7.5%	intergenic (‑158/‑44)	PP_5154 ← / → serA	FAD‑binding oxidoreductase/bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase
RA	5,887,056	T→G	6.0%	intergenic (‑41/‑89)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,890,791	A→C	7.8%	intergenic (+79/+41)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,890,792	A→T	7.5%	intergenic (+80/+40)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,890,793	G→T	7.4%	intergenic (+81/+39)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,897,778	C→G	8.9%	intergenic (‑178/+56)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,783	C→G	9.0%	intergenic (‑183/+51)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,903,164	G→T	13.5%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,165	A→C	22.0%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,914,124	C→T	6.1%	intergenic (+16/+137)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,126	C→G	5.6%	intergenic (+18/+135)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,128	A→G	6.0%	intergenic (+20/+133)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,919,153	T→C	7.3%	V51A (GTC→GCC)	PP_5189 →	hypothetical protein
RA	5,925,392	G→A	6.6%	G251G (GGC→GGT)	gcvT‑II ←	aminomethyltransferase
RA	5,925,395	C→T	6.9%	L250L (CTG→CTA) ‡	gcvT‑II ←	aminomethyltransferase
RA	5,925,396	A→G	6.6%	L250P (CTG→CCG) ‡	gcvT‑II ←	aminomethyltransferase
RA	5,925,399	T→C	6.9%	N249S (AAC→AGC)	gcvT‑II ←	aminomethyltransferase
RA	5,940,748	T→A	5.3%	L196Q (CTG→CAG)	yhhJ →	translation‑like protein
RA	5,947,807	C→A	100%	V223L (GTG→TTG)	rho ←	transcription termination factor Rho
RA	5,966,332	A→T	5.5%	intergenic (‑401/+29)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,966,333	A→T	5.4%	intergenic (‑402/+28)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,975,672	C→T	6.4%	intergenic (+616/‑528)	PP_5727 → / → yifB	hypothetical protein/ATP‑dependent chelatase
RA	5,975,678	T→A	6.4%	intergenic (+622/‑522)	PP_5727 → / → yifB	hypothetical protein/ATP‑dependent chelatase
RA	5,975,679	A→T	6.4%	intergenic (+623/‑521)	PP_5727 → / → yifB	hypothetical protein/ATP‑dependent chelatase
RA	5,982,226	T→C	5.7%	D957D (GAT→GAC)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,984,442	G→A	6.5%	intergenic (+38/+51)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,695	C→A	7.5%	G142V (GGC→GTC)	ycaC‑II ←	putative hydrolase
RA	5,984,700	G→T	6.1%	A140A (GCC→GCA)	ycaC‑II ←	putative hydrolase
RA	5,986,841	T→A	100%	intergenic (+121/‑78)	PP_5245 → / → kefB‑III	AraC family transcriptional regulator/glutathione‑regulated potassium/H+ antiporter
RA	5,988,809	G→A	29.6%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	30.2%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	21.7%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	22.0%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	21.7%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	21.0%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	21.3%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	21.3%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	21.3%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	23.5%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	22.1%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	21.9%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	16.4%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	19.7%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	19.7%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	22.8%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	21.5%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	6,004,997	A→T	6.4%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,006,587	A→C	16.8%	intergenic (+55/+44)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,011,493	G→C	6.1%	K115N (AAG→AAC)	rep →	single‑stranded DNA dependent ATPase
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,015,701	G→C	6.7%	H22D (CAT→GAT)	PP_5266 ←	acetyl‑CoA hydrolase family protein
RA	6,021,700	T→G	7.2%	intergenic (‑51/‑93)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,021,701	C→A	7.5%	intergenic (‑52/‑92)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,042,337	G→C	5.7%	E92Q (GAA→CAA) ‡	PP_5295 →	hypothetical protein
RA	6,042,339	A→T	5.7%	E92D (GAA→GAT) ‡	PP_5295 →	hypothetical protein
RA	6,042,341	G→C	5.7%	C93S (TGC→TCC)	PP_5295 →	hypothetical protein
RA	6,061,252	T→C	8.9%	D39G (GAC→GGC)	hupA ←	DNA‑binding protein HU‑alpha
RA	6,061,256	T→G	7.5%	K38Q (AAG→CAG)	hupA ←	DNA‑binding protein HU‑alpha
RA	6,061,258	T→A	7.7%	D37V (GAC→GTC)	hupA ←	DNA‑binding protein HU‑alpha
RA	6,061,260	C→A	8.6%	L36L (CTG→CTT)	hupA ←	DNA‑binding protein HU‑alpha
RA	6,061,264	G→A	7.4%	A35V (GCC→GTC)	hupA ←	DNA‑binding protein HU‑alpha
RA	6,063,465	G→C	5.2%	L118L (CTG→CTC)	ubiC →	chorismate pyruvate‑lyase
RA	6,064,575	A→T	8.1%	intergenic (+16/+18)	ubiA → / ← PP_5319	4‑hydroxybenzoate octaprenyltransferase/hypothetical protein
RA	6,064,576	G→C	8.1%	intergenic (+17/+17)	ubiA → / ← PP_5319	4‑hydroxybenzoate octaprenyltransferase/hypothetical protein
RA	6,064,577	A→T	7.7%	intergenic (+18/+16)	ubiA → / ← PP_5319	4‑hydroxybenzoate octaprenyltransferase/hypothetical protein
RA	6,072,904	G→A	5.9%	P451L (CCG→CTG)	PP_5327 ←	phosphate ABC transporter permease
RA	6,072,906	G→C	6.0%	S450R (AGC→AGG) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,072,908	T→C	5.9%	S450G (AGC→GGC) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,075,747	G→C	15.1%	A272G (GCC→GGC)	PP_5328 ←	phosphate ABC transporter permease
RA	6,079,438	A→C	5.6%	intergenic (‑213/‑149)	PP_5330 ← / → PP_5331	MFS transporter/acyl‑CoA thioesterase
RA	6,079,443	G→T	5.5%	intergenic (‑218/‑144)	PP_5330 ← / → PP_5331	MFS transporter/acyl‑CoA thioesterase
RA	6,079,445	T→A	5.6%	intergenic (‑220/‑142)	PP_5330 ← / → PP_5331	MFS transporter/acyl‑CoA thioesterase
RA	6,079,448	C→A	6.5%	intergenic (‑223/‑139)	PP_5330 ← / → PP_5331	MFS transporter/acyl‑CoA thioesterase
RA	6,079,451	T→G	5.8%	intergenic (‑226/‑136)	PP_5330 ← / → PP_5331	MFS transporter/acyl‑CoA thioesterase
RA	6,079,454	T→A	5.7%	intergenic (‑229/‑133)	PP_5330 ← / → PP_5331	MFS transporter/acyl‑CoA thioesterase
RA	6,079,456	A→C	5.6%	intergenic (‑231/‑131)	PP_5330 ← / → PP_5331	MFS transporter/acyl‑CoA thioesterase
RA	6,080,988	T→A	8.9%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,080,989	T→A	8.8%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,111,188	G→C	8.7%	P108A (CCA→GCA)	PP_5361 ←	protein P47K
RA	6,127,162	C→G	6.7%	V241V (GTG→GTC) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,127,163	A→T	6.1%	V241E (GTG→GAG) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,127,164	C→G	6.6%	V241L (GTG→CTG) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,147,575	A→T	10.3%	intergenic (‑225/+41)	PP_5392 ← / ← PP_5393	WD40/YVTN repeat‑containing protein/metal‑binding chaperone
RA	6,147,576	A→T	11.7%	intergenic (‑226/+40)	PP_5392 ← / ← PP_5393	WD40/YVTN repeat‑containing protein/metal‑binding chaperone
RA	6,147,577	A→T	10.3%	intergenic (‑227/+39)	PP_5392 ← / ← PP_5393	WD40/YVTN repeat‑containing protein/metal‑binding chaperone
RA	6,147,584	A→G	11.3%	intergenic (‑234/+32)	PP_5392 ← / ← PP_5393	WD40/YVTN repeat‑containing protein/metal‑binding chaperone
RA	6,150,396	C→T	100%	intergenic (‑2580/‑594)	PP_5393 ← / → PP_5395	metal‑binding chaperone/hypothetical protein
RA	6,159,570	T→C	7.4%	T250T (ACA→ACG)	PP_5402 ←	NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,161,481	G→A	5.7%	L80L (CTG→CTA)	PP_5741 →	hypothetical protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	2837053	2837220	168	22 [20]	[21] 22	sad‑I/PP_2489	NAD+‑dependent succinate semialdehyde dehydrogenase/xenobiotic reductase

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 11719	63 (1.050)	4 (0.070)	4/252	NT	6.2%	coding (617/1104 nt)	dnaN	DNA polymerase III subunit beta
	?	NC_002947	= 11774	61 (1.070)					coding (672/1104 nt)	dnaN	DNA polymerase III subunit beta
*	?	NC_002947	= 48558	68 (1.130)	4 (0.070)	4/254	NT	5.7%	coding (817/3162 nt)	czcA‑I	cation efflux system protein
	?	NC_002947	= 48586	68 (1.180)					coding (789/3162 nt)	czcA‑I	cation efflux system protein
*	?	NC_002947	= 70234	62 (1.030)	4 (0.070)	4/250	NT	6.2%	coding (1671/2055 nt)	glyS	glycine‑tRNA ligase subunit beta
	?	NC_002947	= 70267	63 (1.110)					coding (1638/2055 nt)	glyS	glycine‑tRNA ligase subunit beta
*	?	NC_002947	= 83475	59 (0.980)	3 (0.050)	3/248	NT	5.2%	coding (215/912 nt)	hemF	coproporphyrinogen‑III oxidase
	?	NC_002947	= 83505	55 (0.980)					coding (245/912 nt)	hemF	coproporphyrinogen‑III oxidase
*	?	NC_002947	= 107019	61 (1.010)	5 (0.090)	5/254	NT	7.9%	coding (886/1518 nt)	PP_0101	sulfate transporter
	?	NC_002947	= 107078	59 (1.030)					coding (945/1518 nt)	PP_0101	sulfate transporter
*	?	NC_002947	= 111497	55 (0.910)	3 (0.050)	3/256	NT	5.7%	coding (1517/1590 nt)	ctaD	cytochrome c oxidase subunit 1
	?	NC_002947	= 111528	46 (0.790)					coding (1548/1590 nt)	ctaD	cytochrome c oxidase subunit 1
*	?	NC_002947	137328 =	72 (1.200)	4 (0.070)	4/250	NT	6.4%	coding (229/1608 nt)	PP_0131	membrane‑anchored phosphodiesterase
	?	NC_002947	137388 =	49 (0.870)					coding (289/1608 nt)	PP_0131	membrane‑anchored phosphodiesterase
*	?	NC_002947	= 174474	NA (NA)	10 (0.180)	5/252	NT	NA	noncoding (1272/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174479	NA (NA)					noncoding (1277/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	= 195962	120 (1.990)	9 (0.150)	4/264	NT	6.7%	coding (1468/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 196243	131 (2.190)					coding (1749/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	205046 =	NA (NA)	11 (0.190)	6/258	NT	13.9%	coding (10552/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	205784 =	70 (1.160)					coding (11290/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	235320 =	69 (1.150)	14 (0.250)	7/246	NT	17.7%	intergenic (+17/+108)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235401 =	66 (1.190)					intergenic (+98/+27)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
*	?	NC_002947	254395 =	52 (0.860)	5 (0.090)	4/254	NT	10.2%	coding (722/1731 nt)	PP_0203	dipeptidase
	?	NC_002947	254478 =	38 (0.660)					coding (639/1731 nt)	PP_0203	dipeptidase
*	?	NC_002947	= 276548	58 (0.960)	4 (0.070)	3/254	NT	6.1%	coding (620/1221 nt)	PP_0223	DszC family monooxygenase
	?	NC_002947	= 276586	67 (1.170)					coding (582/1221 nt)	PP_0223	DszC family monooxygenase
*	?	NC_002947	283801 =	68 (1.130)	5 (0.090)	5/248	NT	7.6%	coding (1252/2004 nt)	betT‑II	choline/carnitine/betaine transporter
	?	NC_002947	283891 =	59 (1.050)					coding (1342/2004 nt)	betT‑II	choline/carnitine/betaine transporter
*	?	NC_002947	297628 =	65 (1.080)	3 (0.050)	3/256	NT	5.1%	coding (376/1578 nt)	gshA	glutamate‑‑cysteine ligase
	?	NC_002947	297694 =	48 (0.830)					coding (310/1578 nt)	gshA	glutamate‑‑cysteine ligase
*	?	NC_002947	= 314874	53 (0.880)	4 (0.070)	3/252	NT	6.1%	coding (270/567 nt)	nudE	ADP compounds hydrolase NudE
	?	NC_002947	= 314916	74 (1.300)					coding (312/567 nt)	nudE	ADP compounds hydrolase NudE
*	?	NC_002947	328792 =	58 (0.960)	3 (0.050)	3/254	NT	5.1%	coding (458/1368 nt)	PP_0270	sensor histidine kinase
	?	NC_002947	328844 =	57 (0.990)					coding (406/1368 nt)	PP_0270	sensor histidine kinase
*	?	NC_002947	= 358693	60 (1.000)	3 (0.050)	3/248	NT	5.0%	coding (160/1107 nt)	gbdR	AraC family transcriptional regulator
	?	NC_002947	= 358725	58 (1.030)					coding (192/1107 nt)	gbdR	AraC family transcriptional regulator
*	?	NC_002947	= 364761	74 (1.230)	4 (0.070)	4/250	NT	5.2%	coding (841/945 nt)	caiX	carnitine uptake ABC transporter substrate‑binding protein
	?	NC_002947	= 364794	75 (1.330)					coding (808/945 nt)	caiX	carnitine uptake ABC transporter substrate‑binding protein
*	?	NC_002947	= 378581	59 (0.980)	3 (0.050)	3/258	NT	5.1%	coding (834/1293 nt)	gbcA	glycine‑betaine dioxygenase subunit
	?	NC_002947	= 378616	54 (0.930)					coding (799/1293 nt)	gbcA	glycine‑betaine dioxygenase subunit
*	?	NC_002947	385871 =	72 (1.200)	4 (0.070)	3/252	NT	5.6%	coding (665/1041 nt)	ltaE	low specificity l‑threonine aldolase
	?	NC_002947	385908 =	67 (1.180)					coding (628/1041 nt)	ltaE	low specificity l‑threonine aldolase
*	?	NC_002947	= 423646	62 (1.030)	4 (0.070)	4/252	NT	6.5%	coding (302/2787 nt)	PP_0348	hypothetical protein
	?	NC_002947	= 423667	57 (1.000)					coding (281/2787 nt)	PP_0348	hypothetical protein
*	?	NC_002947	436471 =	77 (1.280)	4 (0.070)	4/254	NT	5.4%	coding (817/888 nt)	PP_0358	membrane protein
	?	NC_002947	436522 =	67 (1.170)					coding (766/888 nt)	PP_0358	membrane protein
*	?	NC_002947	= 446004	62 (1.030)	5 (0.090)	5/256	NT	7.3%	coding (690/1806 nt)	PP_0368	acyl‑CoA dehydrogenase
	?	NC_002947	= 446076	68 (1.170)					coding (762/1806 nt)	PP_0368	acyl‑CoA dehydrogenase
*	?	NC_002947	= 468712	64 (1.060)	4 (0.070)	4/246	NT	6.2%	coding (2245/3744 nt)	PP_0386	sensory box protein
	?	NC_002947	= 468784	61 (1.100)					coding (2173/3744 nt)	PP_0386	sensory box protein
*	?	NC_002947	476264 =	55 (0.910)	3 (0.050)	3/250	NT	5.3%	coding (556/1026 nt)	tsaD	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
	?	NC_002947	476325 =	56 (0.990)					coding (617/1026 nt)	tsaD	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
*	?	NC_002947	494303 =	56 (0.930)	3 (0.050)	3/252	NT	5.4%	coding (64/768 nt)	djlA	DnaJ‑like protein DjlA
	?	NC_002947	494360 =	52 (0.910)					coding (121/768 nt)	djlA	DnaJ‑like protein DjlA
*	?	NC_002947	= 544902	40 (0.660)	3 (0.050)	3/254	NT	6.8%	coding (3142/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'
	?	NC_002947	= 544923	44 (0.770)					coding (3163/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'
*	?	NC_002947	563097 =	78 (1.300)	6 (0.100)	5/256	NT	7.4%	coding (180/1002 nt)	rpoA	DNA‑directed RNA polymerase subunit alpha
	?	NC_002947	563131 =	76 (1.310)					coding (214/1002 nt)	rpoA	DNA‑directed RNA polymerase subunit alpha
*	?	NC_002947	= 567334	70 (1.160)	4 (0.070)	4/252	NT	5.9%	coding (2162/2835 nt)	uvrA	uvrABC excinuclease protein A
	?	NC_002947	= 567358	61 (1.070)					coding (2138/2835 nt)	uvrA	uvrABC excinuclease protein A
*	?	NC_002947	= 573948	67 (1.110)	6 (0.110)	5/250	NT	9.0%	coding (713/798 nt)	PP_0487	membrane protein
	?	NC_002947	= 573967	58 (1.030)					coding (732/798 nt)	PP_0487	membrane protein
*	?	NC_002947	= 600327	73 (1.210)	6 (0.100)	6/256	NT	7.6%	coding (154/480 nt)	nrdR	DNA‑binding transcriptional repressor NrdR
	?	NC_002947	= 600361	75 (1.300)					coding (188/480 nt)	nrdR	DNA‑binding transcriptional repressor NrdR
*	?	NC_002947	608687 =	80 (1.330)	6 (0.100)	6/258	NT	7.0%	coding (558/813 nt)	PP_0524	cobalamin‑binding protein HutB
	?	NC_002947	608720 =	81 (1.390)					coding (591/813 nt)	PP_0524	cobalamin‑binding protein HutB
*	?	NC_002947	610390 =	59 (0.980)	4 (0.070)	4/246	NT	7.0%	coding (456/1926 nt)	PP_0525	B12 family TonB‑dependent receptor
	?	NC_002947	610462 =	52 (0.940)					coding (384/1926 nt)	PP_0525	B12 family TonB‑dependent receptor
*	?	NC_002947	611927 =	NA (NA)	8 (0.140)	7/248	NT	NA	coding (824/966 nt)	PP_0526	transposase
	?	NC_002947	611970 =	NA (NA)					coding (867/966 nt)	PP_0526	transposase
*	?	NC_002947	= 613309	43 (0.710)	3 (0.050)	3/256	NT	6.5%	coding (873/1896 nt)	dxs	1‑deoxyxylulose‑5‑phosphate synthase
	?	NC_002947	= 613380	45 (0.780)					coding (802/1896 nt)	dxs	1‑deoxyxylulose‑5‑phosphate synthase
*	?	NC_002947	653519 =	80 (1.330)	4 (0.070)	4/254	NT	5.2%	coding (1224/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	653567 =	70 (1.220)					coding (1176/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
*	?	NC_002947	= 664472	59 (0.980)	5 (0.090)	5/252	NT	8.3%	coding (1338/4902 nt)	yfhM	lipoprotein
	?	NC_002947	= 664499	54 (0.950)					coding (1365/4902 nt)	yfhM	lipoprotein
*	?	NC_002947	= 668081	43 (0.710)	5 (0.100)	5/218	NT	13.7%	intergenic (+45/+107)	yfhM/PP_0571	lipoprotein/membrane protein
	?	NC_002947	= 668150	28 (0.570)					intergenic (+114/+38)	yfhM/PP_0571	lipoprotein/membrane protein
*	?	NC_002947	= 726134	61 (1.010)	4 (0.070)	4/250	NT	6.5%	coding (620/765 nt)	PP_0620	GntR family transcriptional regulator
	?	NC_002947	= 726163	57 (1.010)					coding (591/765 nt)	PP_0620	GntR family transcriptional regulator
*	?	NC_002947	= 741869	NA (NA)	3 (0.050)	3/254	NT	NA	intergenic (+469/‑31)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	= 741902	NA (NA)					coding (3/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	742597 =	NA (NA)	4 (0.070)	3/260	NT	NA	coding (698/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	742657 =	NA (NA)					coding (758/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	= 745418	NA (NA)	3 (0.050)	3/252	NT	NA	coding (1081/1533 nt)	PP_0637	transposase
	?	NC_002947	= 745462	NA (NA)					coding (1037/1533 nt)	PP_0637	transposase
*	?	NC_002947	784671 =	65 (1.080)	4 (0.070)	4/258	NT	6.2%	coding (1255/3831 nt)	PP_0672	sensory box protein
	?	NC_002947	784751 =	59 (1.010)					coding (1175/3831 nt)	PP_0672	sensory box protein
*	?	NC_002947	= 818994	48 (0.800)	3 (0.050)	3/262	NT	5.2%	coding (148/627 nt)	PP_0705	DNA‑3‑methyladenine glycosylase
	?	NC_002947	= 819030	62 (1.050)					coding (184/627 nt)	PP_0705	DNA‑3‑methyladenine glycosylase
*	?	NC_002947	862151 =	40 (0.660)	3 (0.050)	3/252	NT	7.3%	coding (204/906 nt)	yfcH	NAD(P)‑binding Rossmann‑fold domain‑containing protein
	?	NC_002947	862192 =	38 (0.670)					coding (245/906 nt)	yfcH	NAD(P)‑binding Rossmann‑fold domain‑containing protein
*	?	NC_002947	866407 =	47 (0.780)	4 (0.070)	4/258	NT	7.1%	coding (420/558 nt)	PP_0747	hypoxanthine‑guanine phosphoribosyltransferase
	?	NC_002947	866463 =	59 (1.010)					coding (476/558 nt)	PP_0747	hypoxanthine‑guanine phosphoribosyltransferase
*	?	NC_002947	910210 =	67 (1.110)	5 (0.090)	4/252	NT	7.3%	coding (718/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
	?	NC_002947	910238 =	64 (1.120)					coding (746/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
*	?	NC_002947	= 939313	64 (1.060)	3 (0.050)	3/252	NT	5.0%	coding (6309/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 939353	53 (0.930)					coding (6269/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	942696 =	81 (1.350)	4 (0.070)	4/256	NT	5.0%	coding (2926/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	942743 =	74 (1.280)					coding (2879/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 957462	70 (1.160)	4 (0.070)	4/252	NT	5.8%	coding (782/1128 nt)	PP_0818	hypothetical protein
	?	NC_002947	= 957520	63 (1.110)					coding (840/1128 nt)	PP_0818	hypothetical protein
*	?	NC_002947	973460 =	72 (1.200)	4 (0.070)	4/246	NT	6.5%	coding (1752/1863 nt)	secD	protein translocase subunit SecD
	?	NC_002947	973515 =	49 (0.880)					coding (1807/1863 nt)	secD	protein translocase subunit SecD
*	?	NC_002947	990894 =	72 (1.200)	5 (0.090)	5/254	NT	6.9%	coding (775/1143 nt)	PP_0856	lipoprotein
	?	NC_002947	990935 =	66 (1.150)					coding (816/1143 nt)	PP_0856	lipoprotein
*	?	NC_002947	= 1004433	66 (1.100)	5 (0.090)	4/254	NT	7.3%	coding (458/987 nt)	PP_0866	transmembrane sensor
	?	NC_002947	= 1004455	64 (1.110)					coding (480/987 nt)	PP_0866	transmembrane sensor
*	?	NC_002947	= 1015699	58 (0.960)	5 (0.090)	5/256	NT	7.9%	coding (542/1431 nt)	PP_0875	hypothetical protein
	?	NC_002947	= 1015729	61 (1.050)					coding (512/1431 nt)	PP_0875	hypothetical protein
*	?	NC_002947	= 1067099	68 (1.130)	5 (0.090)	5/256	NT	6.8%	coding (340/888 nt)	PP_0925	hypothetical protein
	?	NC_002947	= 1067136	71 (1.230)					coding (377/888 nt)	PP_0925	hypothetical protein
*	?	NC_002947	1094111 =	64 (1.060)	7 (0.120)	6/254	NT	10.8%	coding (56/465 nt)	ptsN	phosphotransferase system subunit IIA
	?	NC_002947	1094140 =	54 (0.940)					coding (27/465 nt)	ptsN	phosphotransferase system subunit IIA
*	?	NC_002947	= 1125996	68 (1.130)	4 (0.070)	4/254	NT	6.4%	coding (551/1377 nt)	tdcG‑II	L‑serine dehydratase
	?	NC_002947	= 1126038	53 (0.920)					coding (509/1377 nt)	tdcG‑II	L‑serine dehydratase
*	?	NC_002947	= 1127917	61 (1.010)	3 (0.050)	3/252	NT	5.1%	coding (1634/2856 nt)	gcvP‑I	glycine dehydrogenase
	?	NC_002947	= 1127973	54 (0.950)					coding (1578/2856 nt)	gcvP‑I	glycine dehydrogenase
*	?	NC_002947	= 1144524	48 (0.800)	3 (0.050)	3/252	NT	6.2%	coding (162/414 nt)	PP_1004	hypothetical protein
	?	NC_002947	= 1144578	45 (0.790)					coding (108/414 nt)	PP_1004	hypothetical protein
*	?	NC_002947	1170744 =	41 (0.680)	6 (0.110)	6/244	NT	13.7%	intergenic (‑335/+98)	leuA/PP_1026	2‑isopropylmalate synthase/M23/M37 family peptidase
	?	NC_002947	1170828 =	38 (0.690)					intergenic (‑419/+14)	leuA/PP_1026	2‑isopropylmalate synthase/M23/M37 family peptidase
*	?	NC_002947	1171495 =	62 (1.030)	4 (0.070)	4/256	NT	6.3%	coding (175/828 nt)	PP_1026	M23/M37 family peptidase
	?	NC_002947	1171529 =	59 (1.020)					coding (141/828 nt)	PP_1026	M23/M37 family peptidase
*	?	NC_002947	1174505 =	57 (0.950)	4 (0.070)	4/256	NT	6.7%	coding (383/756 nt)	PP_1029	membrane protein
	?	NC_002947	1174546 =	57 (0.980)					coding (424/756 nt)	PP_1029	membrane protein
*	?	NC_002947	= 1188365	85 (1.410)	5 (0.090)	4/248	NT	6.1%	coding (3570/3900 nt)	purL	phosphoribosylformylglycinamidine synthase
	?	NC_002947	= 1188401	75 (1.340)					coding (3606/3900 nt)	purL	phosphoribosylformylglycinamidine synthase
*	?	NC_002947	= 1204282	57 (0.950)	3 (0.050)	3/256	NT	5.0%	coding (625/645 nt)	gspN	type II secretion pathway protein GspN
	?	NC_002947	= 1204318	59 (1.020)					intergenic (+16/+144)	gspN/PP_1056	type II secretion pathway protein GspN/iron‑chelator utilization protein
*	?	NC_002947	1251003 =	58 (0.960)	3 (0.050)	3/250	NT	5.8%	coding (268/549 nt)	PP_1093	electron transport complex protein
	?	NC_002947	1251054 =	43 (0.760)					coding (217/549 nt)	PP_1093	electron transport complex protein
*	?	NC_002947	= 1251010	57 (0.950)	4 (0.070)	4/250	NT	7.7%	coding (261/549 nt)	PP_1093	electron transport complex protein
	?	NC_002947	= 1251045	43 (0.760)					coding (226/549 nt)	PP_1093	electron transport complex protein
*	?	NC_002947	= 1257490	55 (0.910)	3 (0.050)	3/252	NT	5.7%	coding (33/567 nt)	dcd	deoxycytidine triphosphate deaminase
	?	NC_002947	= 1257539	47 (0.830)					coding (82/567 nt)	dcd	deoxycytidine triphosphate deaminase
*	?	NC_002947	1296784 =	NA (NA)	10 (0.180)	8/252	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296822 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1311719	49 (0.810)	4 (0.070)	4/240	NT	9.1%	intergenic (‑187/+91)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	= 1311778	36 (0.660)					intergenic (‑246/+32)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
*	?	NC_002947	1346979 =	60 (1.000)	4 (0.070)	4/256	NT	6.4%	intergenic (‑87/+317)	udh/galP‑I	uronate dehydrogenase/porin‑like protein
	?	NC_002947	1347037 =	59 (1.020)					intergenic (‑145/+259)	udh/galP‑I	uronate dehydrogenase/porin‑like protein
*	?	NC_002947	1352172 =	52 (0.860)	4 (0.070)	4/260	NT	7.3%	intergenic (‑388/+54)	nrdB/PP_1178	ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein
	?	NC_002947	1352227 =	51 (0.870)					coding (131/132 nt)	PP_1178	hypothetical protein
*	?	NC_002947	1365962 =	70 (1.160)	5 (0.090)	4/252	NT	7.2%	intergenic (‑23/+27)	PP_1190/PP_1191	hypothetical protein/S4 domain‑containing protein
	?	NC_002947	1365982 =	62 (1.090)					intergenic (‑43/+7)	PP_1190/PP_1191	hypothetical protein/S4 domain‑containing protein
*	?	NC_002947	1419549 =	33 (0.550)	4 (0.090)	4/208	NT	17.1%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419637 =	13 (0.280)					intergenic (‑126/+10)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1436037	68 (1.130)	4 (0.070) +TCAGGCGACCC	4/244	NT	8.7%	intergenic (‑74/+79)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	4583522 =	24 (0.400)					intergenic (‑95/+76)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
*	?	NC_002947	1438266 =	70 (1.160)	4 (0.070)	4/252	NT	6.1%	coding (1404/1614 nt)	yveA	aspartate‑proton symporter
	?	NC_002947	1438317 =	57 (1.000)					coding (1353/1614 nt)	yveA	aspartate‑proton symporter
*	?	NC_002947	1440000 =	NA (NA)	39 (0.670)	37/256	NT	100%	intergenic (‑331/‑328)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 1844451	0 (0.000)					coding (343/2754 nt)	gacS	sensor protein GacS
*	?	NC_002947	= 1441693	NA (NA)	56 (0.950)	46/260	NT	100%	intergenic (+37/+395)	PP_1260/ghrB	transposase/2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase
	?	NC_002947	1844449 =	0 (0.000)					coding (345/2754 nt)	gacS	sensor protein GacS
*	?	NC_002947	= 1444115	58 (0.960)	4 (0.070)	3/250	NT	6.9%	coding (71/948 nt)	PP_1262	LysR family transcriptional regulator
	?	NC_002947	= 1444148	53 (0.940)					coding (38/948 nt)	PP_1262	LysR family transcriptional regulator
*	?	NC_002947	1487892 =	60 (1.000)	3 (0.050)	3/246	NT	5.0%	coding (431/1209 nt)	degS	serine endoprotease DegS
	?	NC_002947	1487979 =	58 (1.040)					coding (344/1209 nt)	degS	serine endoprotease DegS
*	?	NC_002947	= 1499458	24 (0.400)	10 (0.170)	8/262	NT	28.7%	intergenic (+35/‑129)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 1499495	26 (0.440)					intergenic (+72/‑92)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	1499507 =	25 (0.420)	7 (0.120) +GCG	6/260	NT	18.8%	intergenic (+84/‑80)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 5594166	37 (0.620)					intergenic (‑113/+32)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 1506411	55 (0.910)	3 (0.050)	3/256	NT	5.1%	coding (312/780 nt)	petC	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit
	?	NC_002947	= 1506453	59 (1.020)					coding (354/780 nt)	petC	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit
*	?	NC_002947	= 1520999	65 (1.080)	4 (0.070)	4/252	NT	6.3%	coding (256/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	NC_002947	= 1521021	58 (1.020)					coding (278/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
*	?	NC_002947	= 1526934	74 (1.230)	4 (0.070)	4/254	NT	5.3%	coding (159/870 nt)	ftsQ	cell division protein FtsQ
	?	NC_002947	= 1526999	71 (1.240)					coding (224/870 nt)	ftsQ	cell division protein FtsQ
*	?	NC_002947	1527833 =	48 (0.800)	3 (0.050)	3/258	NT	6.3%	coding (174/1263 nt)	ftsA	cell division protein FtsA
	?	NC_002947	1527882 =	42 (0.720)					coding (223/1263 nt)	ftsA	cell division protein FtsA
*	?	NC_002947	= 1531769	20 (0.330)	3 (0.060)	3/218	NT	12.2%	coding (107/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	= 1531817	27 (0.550)					coding (59/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	1572718 =	51 (0.850)	5 (0.090)	5/258	NT	9.9%	coding (840/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase
	?	NC_002947	1572750 =	42 (0.720)					coding (872/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase
*	?	NC_002947	1575567 =	45 (0.750)	3 (0.050)	3/260	NT	5.5%	coding (914/1257 nt)	galP‑II	porin‑like protein
	?	NC_002947	1575613 =	60 (1.020)					coding (868/1257 nt)	galP‑II	porin‑like protein
*	?	NC_002947	= 1612138	55 (0.910)	3 (0.050)	3/254	NT	6.2%	intergenic (‑61/‑66)	PP_1412/ung	3‑hydroxyisobutyryl‑CoA hydrolase/uracil‑DNA glycosylase
	?	NC_002947	= 1612209	39 (0.680)					coding (6/693 nt)	ung	uracil‑DNA glycosylase
*	?	NC_002947	1636406 =	52 (0.860)	3 (0.050)	3/250	NT	5.8%	coding (583/684 nt)	recO	DNA repair protein RecO
	?	NC_002947	1636446 =	49 (0.870)					coding (623/684 nt)	recO	DNA repair protein RecO
*	?	NC_002947	= 1647853	82 (1.360)	5 (0.090)	4/258	NT	6.0%	coding (869/1335 nt)	oprB‑II	carbohydrate‑selective porin
	?	NC_002947	= 1647881	76 (1.300)					coding (841/1335 nt)	oprB‑II	carbohydrate‑selective porin
*	?	NC_002947	= 1690012	39 (0.650)	5 (0.090)	5/254	NT	10.8%	coding (819/1146 nt)	ydcS	polyamine ABC transporter, periplasmic polyamine‑binding protein
	?	NC_002947	= 1690047	45 (0.780)					coding (784/1146 nt)	ydcS	polyamine ABC transporter, periplasmic polyamine‑binding protein
*	?	NC_002947	= 1701039	53 (0.880)	4 (0.070)	4/250	NT	6.8%	coding (507/1023 nt)	prfB	peptide chain release factor 2
	?	NC_002947	= 1701059	60 (1.060)					coding (527/1023 nt)	prfB	peptide chain release factor 2
*	?	NC_002947	1708953 =	50 (0.830)	5 (0.090)	5/250	NT	10.1%	coding (281/378 nt)	PP_1504	hypothetical protein
	?	NC_002947	1708992 =	42 (0.740)					coding (242/378 nt)	PP_1504	hypothetical protein
*	?	NC_002947	1716345 =	65 (1.080)	5 (0.090)	5/256	NT	8.1%	coding (461/690 nt)	PP_1511	hypothetical protein
	?	NC_002947	1716429 =	51 (0.880)					coding (545/690 nt)	PP_1511	hypothetical protein
*	?	NC_002947	= 1727167	60 (1.000)	4 (0.070)	4/250	NT	6.7%	coding (997/2487 nt)	plsB	glycerol‑3‑phosphate acyltransferase
	?	NC_002947	= 1727224	55 (0.970)					coding (940/2487 nt)	plsB	glycerol‑3‑phosphate acyltransferase
*	?	NC_002947	1740480 =	49 (0.810)	3 (0.050)	3/254	NT	6.0%	coding (206/384 nt)	PP_1536	hypothetical protein
	?	NC_002947	1740523 =	47 (0.820)					coding (163/384 nt)	PP_1536	hypothetical protein
*	?	NC_002947	= 1770898	53 (0.880)	4 (0.070)	4/248	NT	7.2%	coding (1646/3000 nt)	PP_1579	hypothetical protein
	?	NC_002947	= 1770925	54 (0.960)					coding (1673/3000 nt)	PP_1579	hypothetical protein
*	?	NC_002947	1776718 =	62 (1.030)	3 (0.050)	3/250	NT	5.1%	coding (321/501 nt)	PP_1584	hypothetical protein
	?	NC_002947	1776768 =	53 (0.940)					coding (371/501 nt)	PP_1584	hypothetical protein
*	?	NC_002947	1781578 =	55 (0.910)	3 (0.050)	3/258	NT	5.1%	coding (2499/2703 nt)	glnD	uridylyltransferase
	?	NC_002947	1781619 =	58 (0.990)					coding (2458/2703 nt)	glnD	uridylyltransferase
*	?	NC_002947	1805570 =	54 (0.900)	4 (0.070)	4/256	NT	7.3%	coding (804/1284 nt)	tilS	tRNA lysidine(34) synthetase TilS
	?	NC_002947	1805622 =	50 (0.860)					coding (856/1284 nt)	tilS	tRNA lysidine(34) synthetase TilS
*	?	NC_002947	1812100 =	55 (0.910)	4 (0.070)	4/258	NT	6.8%	coding (318/897 nt)	PP_1615	LysR family transcriptional regulator
	?	NC_002947	1812134 =	57 (0.980)					coding (284/897 nt)	PP_1615	LysR family transcriptional regulator
*	?	NC_002947	= 1821235	NA (NA)	8 (0.130)	5/266	NT	NA	coding (998/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2070688	NA (NA)					coding (1062/1422 nt)	PP_1846	group II intron‑encoding maturase
*	?	NC_002947	1846959 =	71 (1.180)	5 (0.120) +40 bp	5/186	NT	9.2%	coding (1250/1377 nt)	pfeS‑II	histidine kinase
	?	NC_002947	2435235 =	NA (NA)					intergenic (+82/‑222)	PP_2133/PP_2134	hypothetical protein/transposase
*	?	NC_002947	1855551 =	44 (0.730)	3 (0.050)	3/250	NT	7.1%	coding (563/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	1855629 =	37 (0.650)					coding (641/1341 nt)	PP_1659	hypothetical protein
*	?	NC_002947	= 1855815	42 (0.700)	3 (0.050)	3/256	NT	6.6%	coding (827/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	= 1855848	44 (0.760)					coding (860/1341 nt)	PP_1659	hypothetical protein
*	?	NC_002947	1878480 =	59 (0.980)	3 (0.050)	3/256	NT	5.4%	coding (602/1221 nt)	PP_1684	transporter
	?	NC_002947	1878549 =	48 (0.830)					coding (671/1221 nt)	PP_1684	transporter
*	?	NC_002947	= 1936355	48 (0.800)	3 (0.050)	3/258	NT	5.7%	coding (657/1149 nt)	PP_1736	hypothetical protein
	?	NC_002947	= 1936390	53 (0.910)					coding (692/1149 nt)	PP_1736	hypothetical protein
*	?	NC_002947	= 1936871	61 (1.010)	3 (0.050)	3/244	NT	5.6%	intergenic (+24/+66)	PP_1736/PP_1737	hypothetical protein/hypothetical protein
	?	NC_002947	= 1936916	46 (0.830)					intergenic (+69/+21)	PP_1736/PP_1737	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1955565	49 (0.810)	3 (0.050)	3/256	NT	6.1%	coding (203/975 nt)	PP_1753	DMT superfamily permease
	?	NC_002947	= 1955597	45 (0.780)					coding (235/975 nt)	PP_1753	DMT superfamily permease
*	?	NC_002947	= 1968043	50 (0.830)	4 (0.070)	4/240	NT	8.1%	intergenic (‑54/+104)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
	?	NC_002947	= 1968102	46 (0.850)					intergenic (‑113/+45)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
*	?	NC_002947	= 2076015	46 (0.760)	3 (0.050)	3/252	NT	6.0%	coding (531/879 nt)	PP_5479	LysR family transcriptional regulator
	?	NC_002947	= 2076049	51 (0.900)					coding (565/879 nt)	PP_5479	LysR family transcriptional regulator
*	?	NC_002947	2086080 =	NA (NA)	3 (0.050)	3/256	NT	NA	coding (195/1302 nt)	PP_1865	transposase
	?	NC_002947	2086120 =	NA (NA)					coding (235/1302 nt)	PP_1865	transposase
*	?	NC_002947	2086243 =	NA (NA)	4 (0.070)	4/250	NT	NA	coding (358/1302 nt)	PP_1865	transposase
	?	NC_002947	2086305 =	NA (NA)					coding (420/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2095626	67 (1.110)	5 (0.080)	5/264	NT	6.7%	coding (852/1212 nt)	alaA	glutamate‑pyruvate aminotransferase
	?	NC_002947	= 2095675	72 (1.210)					coding (803/1212 nt)	alaA	glutamate‑pyruvate aminotransferase
*	?	NC_002947	= 2098428	58 (0.960)	4 (0.070)	4/238	NT	6.5%	coding (1462/2358 nt)	PP_1875	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 2098449	63 (1.170)					coding (1441/2358 nt)	PP_1875	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 2105047	64 (1.060)	4 (0.070)	3/258	NT	5.9%	coding (2070/2193 nt)	PP_1880	outer membrane autotransporter
	?	NC_002947	= 2105083	65 (1.110)					coding (2034/2193 nt)	PP_1880	outer membrane autotransporter
*	?	NC_002947	= 2110535	55 (0.910)	4 (0.070)	4/250	NT	6.9%	coding (3751/4899 nt)	PP_1882	membrane protein
	?	NC_002947	= 2110619	56 (0.990)					coding (3667/4899 nt)	PP_1882	membrane protein
*	?	NC_002947	2143021 =	69 (1.150)	4 (0.070)	4/256	NT	5.7%	coding (472/675 nt)	PP_1898	MotA/TolQ/ExbB proton channel family protein
	?	NC_002947	2143071 =	65 (1.120)					coding (522/675 nt)	PP_1898	MotA/TolQ/ExbB proton channel family protein
*	?	NC_002947	= 2229186	54 (0.900)	6 (0.100)	5/256	NT	9.8%	coding (322/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	= 2229235	58 (1.000)					coding (371/783 nt)	ycfH	tRNA D‑aminoacylase
*	?	NC_002947	2258145 =	25 (0.420)	10 (0.180)	5/250	NT	24.2%	intergenic (+200/‑192)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	NC_002947	2414745 =	39 (0.690)					intergenic (+287/‑58)	PP_2114/PP_2115	transposase/hypothetical protein
*	?	NC_002947	= 2285200	53 (0.880)	3 (0.050)	3/254	NT	5.4%	coding (453/972 nt)	PP_2013	hypothetical protein
	?	NC_002947	= 2285226	55 (0.960)					coding (479/972 nt)	PP_2013	hypothetical protein
*	?	NC_002947	2301453 =	0 (0.000)	50 (0.850)	45/260	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	47 (0.790)	42/262	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	2301496 =	18 (0.300)	3 (0.060)	3/238	NT	9.4%	intergenic (‑140/‑191)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2301581 =	42 (0.780)					intergenic (‑225/‑106)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
*	?	NC_002947	2303706 =	39 (0.650)	3 (0.050)	3/254	NT	6.5%	coding (1136/1632 nt)	PP_2027	hypothetical protein
	?	NC_002947	2303772 =	49 (0.850)					coding (1070/1632 nt)	PP_2027	hypothetical protein
*	?	NC_002947	= 2309457	52 (0.860)	3 (0.050)	3/254	NT	5.6%	coding (565/960 nt)	PP_2032	ATPase
	?	NC_002947	= 2309502	52 (0.910)					coding (520/960 nt)	PP_2032	ATPase
*	?	NC_002947	2342349 =	53 (0.880)	4 (0.070)	4/252	NT	8.0%	coding (201/1254 nt)	PP_2058	porin
	?	NC_002947	2342442 =	42 (0.740)					coding (294/1254 nt)	PP_2058	porin
*	?	NC_002947	2343572 =	48 (0.800)	4 (0.070)	4/258	NT	6.9%	coding (132/249 nt)	PP_2059	hypothetical protein
	?	NC_002947	2343641 =	61 (1.050)					coding (63/249 nt)	PP_2059	hypothetical protein
*	?	NC_002947	= 2354301	49 (0.810)	3 (0.050)	3/254	NT	5.6%	coding (231/1278 nt)	PP_2068	multidrug MFS transporter membrane fusion protein
	?	NC_002947	= 2354349	54 (0.940)					coding (183/1278 nt)	PP_2068	multidrug MFS transporter membrane fusion protein
*	?	NC_002947	= 2357154	58 (0.960)	3 (0.050)	3/254	NT	5.3%	coding (224/387 nt)	PP_2071	hypothetical protein
	?	NC_002947	= 2357222	51 (0.890)					coding (156/387 nt)	PP_2071	hypothetical protein
*	?	NC_002947	2360074 =	68 (1.130)	7 (0.120)	7/256	NT	9.9%	coding (1083/1134 nt)	PP_2075	membrane protein
	?	NC_002947	2360114 =	62 (1.070)					coding (1043/1134 nt)	PP_2075	membrane protein
*	?	NC_002947	= 2366297	64 (1.060)	5 (0.090)	5/250	NT	7.6%	coding (733/906 nt)	lysR	transcriptional regulator LysR
	?	NC_002947	= 2366321	62 (1.100)					coding (757/906 nt)	lysR	transcriptional regulator LysR
*	?	NC_002947	2371842 =	57 (0.950)	4 (0.070)	4/260	NT	7.0%	coding (4660/4866 nt)	gdhB	NAD‑specific glutamate dehydrogenase
	?	NC_002947	2371872 =	51 (0.870)					coding (4690/4866 nt)	gdhB	NAD‑specific glutamate dehydrogenase
*	?	NC_002947	2391801 =	60 (1.000)	3 (0.050)	3/256	NT	5.1%	coding (330/2403 nt)	PP_2097	sensory box protein
	?	NC_002947	2391832 =	55 (0.950)					coding (361/2403 nt)	PP_2097	sensory box protein
*	?	NC_002947	2418682 =	37 (0.620)	4 (0.070)	4/252	NT	9.8%	coding (1717/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein
	?	NC_002947	2418728 =	39 (0.680)					coding (1763/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein
*	?	NC_002947	2425590 =	38 (0.630)	3 (0.050)	3/256	NT	6.7%	coding (373/660 nt)	PP_2126	LuxR family transcriptional regulator
	?	NC_002947	2425642 =	47 (0.810)					coding (321/660 nt)	PP_2126	LuxR family transcriptional regulator
*	?	NC_002947	= 2439782	56 (0.930)	3 (0.050)	3/256	NT	5.2%	coding (523/1176 nt)	pcaF‑II	beta‑ketoadipyl‑CoA thiolase subunit beta
	?	NC_002947	= 2439818	55 (0.950)					coding (559/1176 nt)	pcaF‑II	beta‑ketoadipyl‑CoA thiolase subunit beta
*	?	NC_002947	2444731 =	60 (1.000)	4 (0.070)	4/252	NT	6.7%	coding (159/477 nt)	sulA	cell division inhibitor SulA
	?	NC_002947	2444803 =	55 (0.970)					coding (87/477 nt)	sulA	cell division inhibitor SulA
*	?	NC_002947	= 2488022	37 (0.620)	3 (0.050)	3/256	NT	7.8%	coding (394/516 nt)	PP_2182	hypothetical protein
	?	NC_002947	= 2488049	35 (0.600)					coding (421/516 nt)	PP_2182	hypothetical protein
*	?	NC_002947	2556863 =	41 (0.680)	3 (0.050)	3/254	NT	7.0%	coding (448/1200 nt)	PP_2241	MFS transporter
	?	NC_002947	2556907 =	41 (0.710)					coding (404/1200 nt)	PP_2241	MFS transporter
*	?	NC_002947	2562502 =	54 (0.900)	3 (0.050)	3/248	NT	5.5%	coding (240/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
	?	NC_002947	2562555 =	52 (0.930)					coding (293/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
*	?	NC_002947	= 2590693	47 (0.780)	5 (0.090)	5/256	NT	10.3%	coding (37/426 nt)	PP_2268	endodeoxyribonuclease I
	?	NC_002947	= 2590730	42 (0.730)					coding (74/426 nt)	PP_2268	endodeoxyribonuclease I
*	?	NC_002947	= 2665133	55 (0.910)	3 (0.050)	3/258	NT	5.2%	coding (996/2589 nt)	acnA‑II	aconitate hydratase
	?	NC_002947	= 2665163	55 (0.940)					coding (1026/2589 nt)	acnA‑II	aconitate hydratase
*	?	NC_002947	2669969 =	49 (0.810)	3 (0.050)	3/258	NT	6.4%	coding (2349/2610 nt)	acnB	aconitate hydratase B
	?	NC_002947	2670006 =	40 (0.690)					coding (2312/2610 nt)	acnB	aconitate hydratase B
*	?	NC_002947	= 2726788	49 (0.810)	3 (0.050)	3/256	NT	7.0%	coding (534/627 nt)	PP_2388	LysE family transporter
	?	NC_002947	= 2726865	32 (0.550)					coding (457/627 nt)	PP_2388	LysE family transporter
*	?	NC_002947	= 2730421	51 (0.850)	3 (0.050)	3/248	NT	5.8%	coding (868/1044 nt)	PP_2392	MFS transporter
	?	NC_002947	= 2730442	50 (0.890)					coding (889/1044 nt)	PP_2392	MFS transporter
*	?	NC_002947	2749540 =	39 (0.650)	4 (0.070)	4/260	NT	7.9%	intergenic (+13/+101)	PP_2405/PP_2406	hypothetical protein/quinate/shikimate dehydrogenase
	?	NC_002947	2749629 =	55 (0.940)					intergenic (+102/+12)	PP_2405/PP_2406	hypothetical protein/quinate/shikimate dehydrogenase
*	?	NC_002947	2762591 =	47 (0.780)	3 (0.050)	3/256	NT	6.7%	coding (304/789 nt)	PP_2416	iron ABC transporter ATP‑binding protein
	?	NC_002947	2762639 =	38 (0.660)					coding (256/789 nt)	PP_2416	iron ABC transporter ATP‑binding protein
*	?	NC_002947	2765041 =	36 (0.600)	3 (0.050)	3/252	NT	7.8%	noncoding (183/199 nt)	PP_mr33	Cobalamin regulatory region
	?	NC_002947	2765088 =	37 (0.650)					noncoding (136/199 nt)	PP_mr33	Cobalamin regulatory region
*	?	NC_002947	= 2775292	51 (0.850)	4 (0.070)	4/250	NT	6.8%	coding (220/1353 nt)	PP_5521	hypothetical protein
	?	NC_002947	= 2775325	62 (1.100)					coding (187/1353 nt)	PP_5521	hypothetical protein
*	?	NC_002947	= 2796617	55 (0.910)	4 (0.070)	4/254	NT	6.8%	intergenic (+50/‑123)	PP_t42/PP_t43	tRNA‑Val/tRNA‑Val
	?	NC_002947	= 2796643	58 (1.010)					intergenic (+76/‑97)	PP_t42/PP_t43	tRNA‑Val/tRNA‑Val
*	?	NC_002947	= 2829353	40 (0.660)	4 (0.070)	4/254	NT	9.2%	coding (292/339 nt)	PP_2481	hypothetical protein
	?	NC_002947	= 2829365	41 (0.710)					coding (304/339 nt)	PP_2481	hypothetical protein
*	?	NC_002947	= 2839904	36 (0.600)	3 (0.050)	3/250	NT	7.8%	coding (678/678 nt)	PP_2491	ThiJ/PfpI family protein
	?	NC_002947	= 2839944	37 (0.650)					coding (638/678 nt)	PP_2491	ThiJ/PfpI family protein
*	?	NC_002947	2857961 =	55 (0.910)	4 (0.070)	3/248	NT	8.0%	noncoding (86/88 nt)	PP_mr37	C4 ncRNA
	?	NC_002947	2858006 =	41 (0.730)					noncoding (41/88 nt)	PP_mr37	C4 ncRNA
*	?	NC_002947	2880423 =	38 (0.630)	4 (0.070)	4/254	NT	8.6%	coding (265/1176 nt)	PP_2535	transport protein
	?	NC_002947	2880518 =	49 (0.850)					coding (360/1176 nt)	PP_2535	transport protein
*	?	NC_002947	2897461 =	42 (0.700)	3 (0.050)	3/254	NT	6.5%	coding (780/945 nt)	PP_2551	LysR family transcriptional regulator
	?	NC_002947	2897534 =	46 (0.800)					coding (853/945 nt)	PP_2551	LysR family transcriptional regulator
*	?	NC_002947	2900970 =	42 (0.700)	4 (0.070)	4/252	NT	9.3%	coding (52/1908 nt)	quiC	3‑dehydroshikimate dehydratase
	?	NC_002947	2901018 =	38 (0.670)					coding (100/1908 nt)	quiC	3‑dehydroshikimate dehydratase
*	?	NC_002947	2903383 =	46 (0.760)	4 (0.070)	4/250	NT	8.5%	coding (193/681 nt)	PP_2555	hypothetical protein
	?	NC_002947	2903428 =	43 (0.760)					coding (148/681 nt)	PP_2555	hypothetical protein
*	?	NC_002947	2903987 =	60 (1.000)	3 (0.050)	3/254	NT	5.7%	coding (941/1353 nt)	PP_2556	chromate transporter
	?	NC_002947	2904037 =	42 (0.730)					coding (891/1353 nt)	PP_2556	chromate transporter
*	?	NC_002947	= 2905912	51 (0.850)	4 (0.070)	4/248	NT	7.6%	intergenic (‑104/+112)	PP_2557/PP_2558	sensory box protein/outer membrane efflux protein
	?	NC_002947	= 2905940	50 (0.890)					intergenic (‑132/+84)	PP_2557/PP_2558	sensory box protein/outer membrane efflux protein
*	?	NC_002947	2915382 =	58 (0.960)	3 (0.050)	3/252	NT	5.4%	coding (4402/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
	?	NC_002947	2915438 =	50 (0.880)					coding (4458/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
*	?	NC_002947	2945907 =	59 (0.980)	4 (0.070)	4/252	NT	7.1%	coding (1615/1755 nt)	yijP	phosphoethanolamine transferase CptA
	?	NC_002947	2945943 =	49 (0.860)					coding (1579/1755 nt)	yijP	phosphoethanolamine transferase CptA
*	?	NC_002947	= 2954393	46 (0.760)	4 (0.070)	4/252	NT	8.1%	coding (105/1383 nt)	PP_2586	putative amino acid transporter
	?	NC_002947	= 2954428	47 (0.830)					coding (70/1383 nt)	PP_2586	putative amino acid transporter
*	?	NC_002947	= 2974744	53 (0.880)	3 (0.050)	3/252	NT	5.9%	coding (677/777 nt)	PP_2601	IclR family transcriptional regulator
	?	NC_002947	= 2974769	46 (0.810)					coding (702/777 nt)	PP_2601	IclR family transcriptional regulator
*	?	NC_002947	2981145 =	71 (1.180)	6 (0.110)	6/246	NT	9.0%	coding (1220/1734 nt)	PP_2607	hypothetical protein
	?	NC_002947	2981176 =	55 (0.990)					coding (1189/1734 nt)	PP_2607	hypothetical protein
*	?	NC_002947	3005851 =	62 (1.030)	3 (0.050)	3/254	NT	5.3%	coding (2432/3621 nt)	PP_2627	membrane protein
	?	NC_002947	3005896 =	49 (0.850)					coding (2477/3621 nt)	PP_2627	membrane protein
*	?	NC_002947	= 3021743	45 (0.750)	3 (0.050)	3/250	NT	6.4%	coding (2281/3519 nt)	PP_2638	cellulose synthase operon protein C
	?	NC_002947	= 3021764	46 (0.810)					coding (2302/3519 nt)	PP_2638	cellulose synthase operon protein C
*	?	NC_002947	= 3031549	50 (0.830)	5 (0.090)	4/256	NT	9.1%	coding (856/2763 nt)	mgtA	ATP‑dependent magnesium transporter
	?	NC_002947	= 3031578	52 (0.900)					coding (885/2763 nt)	mgtA	ATP‑dependent magnesium transporter
*	?	NC_002947	3101002 =	63 (1.050)	5 (0.080)	4/262	NT	7.8%	coding (303/681 nt)	PP_2710	hypothetical protein
	?	NC_002947	3101034 =	56 (0.950)					coding (335/681 nt)	PP_2710	hypothetical protein
*	?	NC_002947	3101513 =	30 (0.500)	4 (0.070)	4/254	NT	10.7%	coding (147/807 nt)	PP_2711	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	3101562 =	38 (0.660)					coding (196/807 nt)	PP_2711	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	= 3135652	42 (0.700)	5 (0.090)	3/256	NT	10.6%	coding (305/1335 nt)	PP_2752	hypothetical protein
	?	NC_002947	= 3135680	44 (0.760)					coding (333/1335 nt)	PP_2752	hypothetical protein
*	?	NC_002947	3164839 =	54 (0.900)	5 (0.090)	4/258	NT	9.2%	coding (350/1083 nt)	PP_2779	putative Beta‑ketoacyl synthase
	?	NC_002947	3164866 =	46 (0.790)					coding (377/1083 nt)	PP_2779	putative Beta‑ketoacyl synthase
*	?	NC_002947	3166894 =	58 (0.960)	4 (0.070)	4/252	NT	7.4%	coding (31/1212 nt)	PP_2781	beta‑ketoacyl synthase
	?	NC_002947	3166948 =	45 (0.790)					coding (85/1212 nt)	PP_2781	beta‑ketoacyl synthase
*	?	NC_002947	= 3187963	48 (0.800)	3 (0.050)	3/256	NT	5.6%	coding (1579/1659 nt)	actP‑II	acetate permease
	?	NC_002947	= 3188000	55 (0.950)					coding (1616/1659 nt)	actP‑II	acetate permease
*	?	NC_002947	= 3210516	45 (0.750)	6 (0.110)	5/252	NT	11.4%	coding (210/870 nt)	PP_2814	hypothetical protein
	?	NC_002947	= 3210571	51 (0.900)					coding (155/870 nt)	PP_2814	hypothetical protein
*	?	NC_002947	3297037 =	50 (0.830)	4 (0.070)	4/256	NT	8.0%	coding (45/189 nt)	PP_2899	hypothetical protein
	?	NC_002947	3297072 =	44 (0.760)					coding (80/189 nt)	PP_2899	hypothetical protein
*	?	NC_002947	3303929 =	58 (0.960)	3 (0.050)	3/250	NT	5.3%	coding (565/1383 nt)	cysS	cysteine‑‑tRNA ligase
	?	NC_002947	3303975 =	52 (0.920)					coding (611/1383 nt)	cysS	cysteine‑‑tRNA ligase
*	?	NC_002947	3458060 =	61 (1.010)	4 (0.070)	4/260	NT	6.4%	coding (631/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease
	?	NC_002947	3458119 =	58 (0.990)					coding (572/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease
*	?	NC_002947	3458370 =	55 (0.910)	3 (0.050)	3/256	NT	5.5%	coding (321/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease
	?	NC_002947	3458412 =	50 (0.860)					coding (279/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease
*	?	NC_002947	3474666 =	65 (1.080)	3 (0.050)	3/246	NT	5.3%	coding (2047/2517 nt)	PP_3087	excinuclease ABC subunit A
	?	NC_002947	3474759 =	47 (0.850)					coding (1954/2517 nt)	PP_3087	excinuclease ABC subunit A
*	?	NC_002947	3491938 =	59 (0.980)	4 (0.070)	3/254	NT	6.6%	coding (481/1071 nt)	PP_3096	hypothetical protein
	?	NC_002947	3491976 =	56 (0.980)					coding (443/1071 nt)	PP_3096	hypothetical protein
*	?	NC_002947	3522999 =	NA (NA)	6 (0.110)	6/250	NT	NA	coding (90/360 nt)	PP_3113	transposase
	?	NC_002947	3523034 =	NA (NA)					coding (125/360 nt)	PP_3113	transposase
*	?	NC_002947	3524566 =	NA (NA)	3 (0.050)	3/254	NT	NA	coding (1279/1533 nt)	PP_3114	transposase
	?	NC_002947	3524616 =	NA (NA)					coding (1329/1533 nt)	PP_3114	transposase
*	?	NC_002947	= 3532978	57 (0.950)	3 (0.050)	3/252	NT	5.1%	coding (205/906 nt)	PP_3121	transcriptional regulator, LysR family
	?	NC_002947	= 3533046	57 (1.000)					coding (137/906 nt)	PP_3121	transcriptional regulator, LysR family
*	?	NC_002947	= 3542080	44 (0.730)	3 (0.050)	3/254	NT	6.3%	coding (643/966 nt)	galE	UDP‑glucose 4‑epimerase
	?	NC_002947	= 3542109	47 (0.820)					coding (614/966 nt)	galE	UDP‑glucose 4‑epimerase
*	?	NC_002947	3547416 =	59 (0.980)	3 (0.050)	3/254	NT	5.2%	coding (361/1377 nt)	PP_3132	polysaccharide transporter
	?	NC_002947	3547489 =	54 (0.940)					coding (434/1377 nt)	PP_3132	polysaccharide transporter
*	?	NC_002947	3564614 =	24 (0.400)	3 (0.050)	3/254	NT	11.8%	coding (312/1089 nt)	potF‑II	putrescine‑binding protein
	?	NC_002947	3564650 =	22 (0.380)					coding (276/1089 nt)	potF‑II	putrescine‑binding protein
*	?	NC_002947	3590042 =	49 (0.810)	4 (0.070)	3/250	NT	8.3%	coding (563/1251 nt)	nicP‑I	porin‑like protein
	?	NC_002947	3590096 =	42 (0.740)					coding (617/1251 nt)	nicP‑I	porin‑like protein
*	?	NC_002947	= 3590330	75 (1.250)	5 (0.090)	5/248	NT	6.3%	coding (851/1251 nt)	nicP‑I	porin‑like protein
	?	NC_002947	= 3590342	78 (1.390)					coding (863/1251 nt)	nicP‑I	porin‑like protein
*	?	NC_002947	3605651 =	40 (0.660)	5 (0.090)	5/260	NT	12.3%	coding (871/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein
	?	NC_002947	3605686 =	32 (0.540)					coding (906/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein
*	?	NC_002947	= 3632226	52 (0.860)	3 (0.050)	3/256	NT	5.5%	coding (1120/1368 nt)	PP_5590	hypothetical protein
	?	NC_002947	= 3632274	53 (0.920)					coding (1168/1368 nt)	PP_5590	hypothetical protein
*	?	NC_002947	= 3662134	54 (0.900)	6 (0.110)	6/252	NT	10.2%	coding (700/1143 nt)	PP_3226	acyl‑CoA dehydrogenase‑related protein
	?	NC_002947	= 3662170	55 (0.970)					coding (664/1143 nt)	PP_3226	acyl‑CoA dehydrogenase‑related protein
*	?	NC_002947	= 3676865	53 (0.880)	5 (0.090)	4/254	NT	8.7%	intergenic (‑20/‑133)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein
	?	NC_002947	= 3676886	54 (0.940)					intergenic (‑41/‑112)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein
*	?	NC_002947	3766030 =	51 (0.850)	3 (0.050)	3/254	NT	5.5%	coding (361/873 nt)	PP_5599	LysR family transcriptional regulator
	?	NC_002947	3766093 =	55 (0.960)					coding (424/873 nt)	PP_5599	LysR family transcriptional regulator
*	?	NC_002947	3790787 =	53 (0.880)	4 (0.070)	4/258	NT	7.3%	coding (231/1026 nt)	PP_3353	sulfatase‑modifying protein
	?	NC_002947	3790824 =	50 (0.860)					coding (268/1026 nt)	PP_3353	sulfatase‑modifying protein
*	?	NC_002947	= 3830125	35 (0.580)	3 (0.050)	3/248	NT	7.1%	coding (1255/1785 nt)	PP_3383	gluconate 2‑dehydrogenase flavoprotein subunit
	?	NC_002947	= 3830165	46 (0.820)					coding (1215/1785 nt)	PP_3383	gluconate 2‑dehydrogenase flavoprotein subunit
*	?	NC_002947	= 3836285	58 (0.960)	3 (0.050)	3/254	NT	5.1%	coding (773/879 nt)	PP_3387	hypothetical protein
	?	NC_002947	= 3836298	57 (0.990)					coding (786/879 nt)	PP_3387	hypothetical protein
*	?	NC_002947	3842471 =	61 (1.010)	4 (0.070)	4/256	NT	6.9%	coding (414/1317 nt)	PP_3391	tartrate MFS transporter
	?	NC_002947	3842508 =	49 (0.850)					coding (377/1317 nt)	PP_3391	tartrate MFS transporter
*	?	NC_002947	3847156 =	41 (0.680)	3 (0.050)	3/256	NT	7.4%	coding (246/1329 nt)	PP_3396	hypothetical protein
	?	NC_002947	3847197 =	36 (0.620)					coding (287/1329 nt)	PP_3396	hypothetical protein
*	?	NC_002947	= 3878852	37 (0.620)	4 (0.070)	4/254	NT	10.8%	coding (687/3180 nt)	mexF	multidrug RND transporter MexF
	?	NC_002947	= 3878889	31 (0.540)					coding (724/3180 nt)	mexF	multidrug RND transporter MexF
*	?	NC_002947	3904389 =	54 (0.900)	4 (0.070)	4/260	NT	6.5%	coding (354/1593 nt)	ilvA‑I	threonine deaminase
	?	NC_002947	3904431 =	62 (1.050)					coding (312/1593 nt)	ilvA‑I	threonine deaminase
*	?	NC_002947	3904713 =	53 (0.880)	3 (0.050)	3/254	NT	5.5%	coding (30/1593 nt)	ilvA‑I	threonine deaminase
	?	NC_002947	3904749 =	52 (0.910)					intergenic (‑7/+4)	ilvA‑I/PP_mr42	threonine deaminase/P9 ncRNA
*	?	NC_002947	= 3916981	49 (0.810)	4 (0.070)	4/250	NT	7.9%	coding (763/3129 nt)	mexB	multidrug resistance protein MexB
	?	NC_002947	= 3917012	47 (0.830)					coding (794/3129 nt)	mexB	multidrug resistance protein MexB
*	?	NC_002947	= 3919450	51 (0.850)	3 (0.050)	3/254	NT	5.4%	coding (42/576 nt)	mobA	molybdenum cofactor guanylyltransferase
	?	NC_002947	= 3919504	57 (0.990)					coding (96/576 nt)	mobA	molybdenum cofactor guanylyltransferase
*	?	NC_002947	3947913 =	55 (0.910)	5 (0.110)	5/210	NT	12.4%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3947998 =	27 (0.570)					coding (51/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	= 3966031	62 (1.030)	6 (0.110)	4/246	NT	8.7%	coding (224/2001 nt)	ydcP	peptidase
	?	NC_002947	= 3966096	69 (1.240)					coding (289/2001 nt)	ydcP	peptidase
*	?	NC_002947	3970211 =	NA (NA)	5 (0.090)	4/254	NT	NA	coding (130/1536 nt)	PP_3501	transposase
	?	NC_002947	3970241 =	NA (NA)					coding (160/1536 nt)	PP_3501	transposase
*	?	NC_002947	4013887 =	66 (1.100)	5 (0.090)	4/248	NT	8.2%	coding (229/519 nt)	PP_3541	MgtC family transporter
	?	NC_002947	4013931 =	50 (0.890)					coding (185/519 nt)	PP_3541	MgtC family transporter
*	?	NC_002947	4056568 =	50 (0.830)	3 (0.050)	3/250	NT	5.6%	coding (1094/2406 nt)	PP_3575	ferric siderophore receptor
	?	NC_002947	4056638 =	54 (0.960)					coding (1024/2406 nt)	PP_3575	ferric siderophore receptor
*	?	NC_002947	= 4109808	40 (0.660)	4 (0.070)	4/248	NT	9.6%	coding (1630/2991 nt)	PP_3616	membrane protein
	?	NC_002947	= 4109890	38 (0.680)					coding (1712/2991 nt)	PP_3616	membrane protein
*	?	NC_002947	4144914 =	64 (1.060)	4 (0.070)	4/250	NT	6.6%	coding (467/753 nt)	PP_3649	GntR family transcriptional regulator
	?	NC_002947	4144974 =	53 (0.940)					coding (527/753 nt)	PP_3649	GntR family transcriptional regulator
*	?	NC_002947	= 4148251	48 (0.800)	3 (0.050)	3/256	NT	5.7%	coding (506/633 nt)	PP_3652	LysE family transporter
	?	NC_002947	= 4148281	54 (0.930)					coding (476/633 nt)	PP_3652	LysE family transporter
*	?	NC_002947	4159083 =	27 (0.450)	9 (0.170)	7/234	NT	29.6%	intergenic (+31/‑178)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	4159143 =	19 (0.360)					intergenic (+91/‑118)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	= 4187143	41 (0.680)	5 (0.090)	4/256	NT	11.3%	coding (490/1242 nt)	PP_3683	hypothetical protein
	?	NC_002947	= 4187158	39 (0.670)					coding (505/1242 nt)	PP_3683	hypothetical protein
*	?	NC_002947	= 4249166	42 (0.700)	3 (0.050)	3/254	NT	6.4%	coding (861/2118 nt)	PP_3724	acyl‑CoA synthetase
	?	NC_002947	= 4249191	47 (0.820)					coding (836/2118 nt)	PP_3724	acyl‑CoA synthetase
*	?	NC_002947	= 4255310	61 (1.010)	3 (0.050)	3/250	NT	5.1%	coding (818/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4255385	55 (0.970)					coding (743/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	4271213 =	63 (1.050)	4 (0.070)	4/250	NT	6.9%	coding (1353/1896 nt)	mrdA‑I	transpeptidase
	?	NC_002947	4271308 =	48 (0.850)					coding (1448/1896 nt)	mrdA‑I	transpeptidase
*	?	NC_002947	4311733 =	77 (1.280)	5 (0.090)	5/256	NT	6.4%	coding (453/1152 nt)	PP_3784	hypothetical protein
	?	NC_002947	4311764 =	71 (1.230)					coding (484/1152 nt)	PP_3784	hypothetical protein
*	?	NC_002947	4327164 =	63 (1.050)	5 (0.090)	5/248	NT	7.7%	coding (132/1194 nt)	PP_3797	membrane protein
	?	NC_002947	4327208 =	61 (1.090)					coding (176/1194 nt)	PP_3797	membrane protein
*	?	NC_002947	4357168 =	57 (0.950)	3 (0.050)	3/252	NT	5.2%	coding (537/1023 nt)	PP_3831	hypothetical protein
	?	NC_002947	4357214 =	56 (0.980)					coding (583/1023 nt)	PP_3831	hypothetical protein
*	?	NC_002947	4513057 =	52 (0.860)	4 (0.070)	4/252	NT	7.7%	coding (1935/2505 nt)	ftsK	DNA translocase FtsK
	?	NC_002947	4513085 =	47 (0.830)					coding (1907/2505 nt)	ftsK	DNA translocase FtsK
*	?	NC_002947	4516403 =	43 (0.710)	3 (0.050)	3/252	NT	7.2%	coding (268/708 nt)	ate	arginyl‑tRNA‑‑protein transferase
	?	NC_002947	4516441 =	37 (0.650)					coding (306/708 nt)	ate	arginyl‑tRNA‑‑protein transferase
*	?	NC_002947	4583475 =	36 (0.600)	4 (0.080)	3/226	NT	15.8%	intergenic (‑48/+123)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	4583576 =	12 (0.240)					intergenic (‑149/+22)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
*	?	NC_002947	= 4586029	16 (0.270)	26 (0.470)	18/244	NT	71.6%	intergenic (+112/+103)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586109	6 (0.110)					intergenic (+192/+23)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4586034 =	16 (0.270)	5 (0.100)	5/222	NT	33.0%	intergenic (+117/+98)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586105 =	7 (0.140)					intergenic (+188/+27)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4604411 =	61 (1.010)	3 (0.050)	3/250	NT	5.3%	coding (241/411 nt)	PP_4076	hypothetical protein
	?	NC_002947	4604450 =	49 (0.870)					coding (280/411 nt)	PP_4076	hypothetical protein
*	?	NC_002947	4612747 =	69 (1.150)	5 (0.090)	5/252	NT	7.8%	intergenic (+1709/‑398)	hcpC‑II/PP_4084	hemolysin‑coregulated protein/hypothetical protein
	?	NC_002947	4612807 =	53 (0.930)					intergenic (+1769/‑338)	hcpC‑II/PP_4084	hemolysin‑coregulated protein/hypothetical protein
*	?	NC_002947	4647557 =	30 (0.500)	5 (0.120)	5/188	NT	24.9%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4647665 =	9 (0.210)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	4668359 =	66 (1.100)	6 (0.110)	5/250	NT	9.3%	coding (231/1533 nt)	nuoM	NADH‑quinone oxidoreductase subunit M
	?	NC_002947	4668402 =	55 (0.970)					coding (274/1533 nt)	nuoM	NADH‑quinone oxidoreductase subunit M
*	?	NC_002947	4676930 =	38 (0.630)	3 (0.050)	3/252	NT	7.5%	coding (1644/2250 nt)	ldcC	lysine decarboxylase
	?	NC_002947	4676980 =	38 (0.670)					coding (1594/2250 nt)	ldcC	lysine decarboxylase
*	?	NC_002947	= 4698498	66 (1.100)	6 (0.100)	6/256	NT	8.6%	coding (2190/2655 nt)	kdpD	sensor protein
	?	NC_002947	= 4698541	64 (1.110)					coding (2147/2655 nt)	kdpD	sensor protein
*	?	NC_002947	= 4743533	65 (1.080)	4 (0.070)	4/252	NT	5.7%	coding (459/1593 nt)	PP_4197	GntR family transcriptional regulator
	?	NC_002947	= 4743559	72 (1.260)					coding (433/1593 nt)	PP_4197	GntR family transcriptional regulator
*	?	NC_002947	= 4787630	74 (1.230)	4 (0.070)	4/252	NT	5.3%	coding (6210/6525 nt)	pvdI	non‑ribosomal peptide synthetase
	?	NC_002947	= 4787661	72 (1.260)					coding (6179/6525 nt)	pvdI	non‑ribosomal peptide synthetase
*	?	NC_002947	4808174 =	0 (0.000)	20 (0.450)	16/196	NT	46.5%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	46 (1.040)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4808179	0 (0.000)	20 (0.370)	10/242	NT	46.0%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	47 (0.860)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4817886 =	60 (1.000)	6 (0.100)	6/264	NT	9.2%	coding (582/795 nt)	PP_4242	conserved protein of unknown function with Rhs repeat‑associated core domain
	?	NC_002947	4817910 =	59 (0.990)					coding (606/795 nt)	PP_4242	conserved protein of unknown function with Rhs repeat‑associated core domain
*	?	NC_002947	4822859 =	66 (1.100)	4 (0.070)	4/248	NT	6.2%	coding (8331/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	4822919 =	60 (1.070)					coding (8271/12954 nt)	pvdL	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4856109	43 (0.710)	5 (0.090)	4/238	NT	9.8%	intergenic (+81/+115)	PP_4270/PP_5670	hypothetical protein/hypothetical protein
	?	NC_002947	= 4856168	54 (1.000)					intergenic (+140/+56)	PP_4270/PP_5670	hypothetical protein/hypothetical protein
*	?	NC_002947	4878945 =	67 (1.110)	6 (0.100)	5/254	NT	9.1%	coding (103/504 nt)	allA	ureidoglycolate lyase
	?	NC_002947	4878980 =	56 (0.980)					coding (138/504 nt)	allA	ureidoglycolate lyase
*	?	NC_002947	4896378 =	39 (0.650)	9 (0.180)	7/224	NT	21.2%	intergenic (+11/‑197)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	4896467 =	34 (0.670)					intergenic (+100/‑108)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	4930594 =	75 (1.250)	9 (0.160)	6/248	NT	12.0%	coding (379/789 nt)	cheZ	protein phosphatase CheZ
	?	NC_002947	4930639 =	62 (1.110)					coding (334/789 nt)	cheZ	protein phosphatase CheZ
*	?	NC_002947	4957290 =	75 (1.250)	4 (0.070)	4/258	NT	5.2%	coding (228/792 nt)	fliH	flagellar assembly protein FliH
	?	NC_002947	4957335 =	72 (1.230)					coding (183/792 nt)	fliH	flagellar assembly protein FliH
*	?	NC_002947	4962828 =	67 (1.110)	6 (0.110)	5/252	NT	8.9%	coding (827/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
	?	NC_002947	4962862 =	60 (1.050)					coding (793/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
*	?	NC_002947	4963771 =	58 (0.960)	5 (0.090)	4/252	NT	9.9%	intergenic (‑117/+111)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ
	?	NC_002947	4963837 =	36 (0.630)					intergenic (‑183/+45)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ
*	?	NC_002947	4978911 =	42 (0.700)	5 (0.090)	5/250	NT	12.4%	coding (511/786 nt)	flgG	flagellar basal‑body rod protein FlgG
	?	NC_002947	4978950 =	31 (0.550)					coding (472/786 nt)	flgG	flagellar basal‑body rod protein FlgG
*	?	NC_002947	5055940 =	60 (1.000)	4 (0.070)	4/254	NT	6.7%	coding (387/942 nt)	gsiC	glutathione ABC transporter permease
	?	NC_002947	5055976 =	54 (0.940)					coding (351/942 nt)	gsiC	glutathione ABC transporter permease
*	?	NC_002947	= 5077190	68 (1.130)	4 (0.070)	4/246	NT	6.0%	coding (312/327 nt)	PP_4470	Arc domain‑containing transcriptional regulator
	?	NC_002947	= 5077271	62 (1.120)					intergenic (+66/+42)	PP_4470/mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
*	?	NC_002947	5108552 =	72 (1.200)	5 (0.090)	5/258	NT	6.9%	coding (289/885 nt)	PP_4494	LysR family transcriptional regulator
	?	NC_002947	5108578 =	65 (1.110)					coding (315/885 nt)	PP_4494	LysR family transcriptional regulator
*	?	NC_002947	5112143 =	61 (1.010)	4 (0.070)	3/248	NT	6.5%	coding (269/1068 nt)	rluB	23S rRNA pseudouridylate synthase B
	?	NC_002947	5112228 =	58 (1.030)					coding (184/1068 nt)	rluB	23S rRNA pseudouridylate synthase B
*	?	NC_002947	5117270 =	77 (1.280)	4 (0.070)	4/256	NT	5.2%	coding (359/678 nt)	PP_4503	two‑component system response regulator
	?	NC_002947	5117340 =	73 (1.260)					coding (429/678 nt)	PP_4503	two‑component system response regulator
*	?	NC_002947	5141238 =	66 (1.100)	4 (0.070)	4/256	NT	6.2%	coding (324/894 nt)	PP_4525	LysR family transcriptional regulator
	?	NC_002947	5141272 =	58 (1.000)					coding (290/894 nt)	PP_4525	LysR family transcriptional regulator
*	?	NC_002947	5147378 =	62 (1.030)	5 (0.090)	5/256	NT	7.5%	coding (483/1302 nt)	mscMB	miniconductance mechanosensitive channel protein
	?	NC_002947	5147425 =	63 (1.090)					coding (530/1302 nt)	mscMB	miniconductance mechanosensitive channel protein
*	?	NC_002947	5186784 =	56 (0.930)	3 (0.050)	3/258	NT	5.4%	coding (121/876 nt)	PP_4566	drug/metabolite transporter
	?	NC_002947	5186839 =	50 (0.860)					coding (176/876 nt)	PP_4566	drug/metabolite transporter
*	?	NC_002947	5205175 =	93 (1.550)	4 (0.080)	4/236	NT	5.3%	intergenic (+66/+49)	PP_4585/PP_4586	TrmH family RNA methyltransferase/hypothetical protein
	?	NC_002947	5205219 =	61 (1.140)					intergenic (+110/+5)	PP_4585/PP_4586	TrmH family RNA methyltransferase/hypothetical protein
*	?	NC_002947	= 5227211	66 (1.100)	4 (0.070)	3/250	NT	5.8%	coding (1848/2391 nt)	PP_4606	ferric siderophore receptor
	?	NC_002947	= 5227226	68 (1.200)					coding (1833/2391 nt)	PP_4606	ferric siderophore receptor
*	?	NC_002947	= 5235947	52 (0.860)	4 (0.070)	4/256	NT	7.2%	coding (1281/2325 nt)	fecA	outer membrane ferric citrate porin
	?	NC_002947	= 5236019	53 (0.920)					coding (1353/2325 nt)	fecA	outer membrane ferric citrate porin
*	?	NC_002947	= 5250509	57 (0.950)	4 (0.070)	4/250	NT	7.1%	coding (176/687 nt)	cidB	holin CidA anti‑holin regulator
	?	NC_002947	= 5250557	51 (0.900)					coding (128/687 nt)	cidB	holin CidA anti‑holin regulator
*	?	NC_002947	= 5259635	54 (0.900)	7 (0.120)	7/256	NT	11.5%	coding (177/1179 nt)	yqeF	acetyl‑CoA acetyltransferase
	?	NC_002947	= 5259661	56 (0.970)					coding (203/1179 nt)	yqeF	acetyl‑CoA acetyltransferase
*	?	NC_002947	5288394 =	47 (0.780)	8 (0.170)	7/206	NT	20.4%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5288488 =	26 (0.560)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	= 5315015	46 (0.760)	3 (0.050)	3/242	NT	5.7%	intergenic (‑2/+66)	msrP/PP_4677	methionine sulfoxide reductase catalytic subunit/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
	?	NC_002947	= 5315042	58 (1.060)					intergenic (‑29/+39)	msrP/PP_4677	methionine sulfoxide reductase catalytic subunit/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
*	?	NC_002947	5352055 =	58 (0.960)	3 (0.050)	3/256	NT	5.7%	coding (2062/2106 nt)	pnp	polyribonucleotide nucleotidyltransferase
	?	NC_002947	5352093 =	44 (0.760)					coding (2024/2106 nt)	pnp	polyribonucleotide nucleotidyltransferase
*	?	NC_002947	= 5404701	49 (0.810)	3 (0.050)	3/252	NT	5.6%	coding (519/801 nt)	PP_4748	amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 5404753	54 (0.950)					coding (467/801 nt)	PP_4748	amino acid ABC transporter substrate‑binding protein
*	?	NC_002947	= 5447654	72 (1.200)	6 (0.100)	5/258	NT	7.9%	coding (1159/1284 nt)	hemL	glutamate‑1‑semialdehyde 2,1‑aminomutase
	?	NC_002947	= 5447683	70 (1.200)					coding (1188/1284 nt)	hemL	glutamate‑1‑semialdehyde 2,1‑aminomutase
*	?	NC_002947	5459448 =	70 (1.160)	7 (0.120)	5/254	NT	9.7%	coding (512/606 nt)	PP_4795	lipoprotein
	?	NC_002947	5459476 =	63 (1.100)					coding (540/606 nt)	PP_4795	lipoprotein
*	?	NC_002947	= 5476602	56 (0.930)	4 (0.070)	4/256	NT	6.6%	coding (832/1317 nt)	PP_4813	PAP2 family protein/DedA family protein
	?	NC_002947	= 5476642	60 (1.040)					coding (872/1317 nt)	PP_4813	PAP2 family protein/DedA family protein
*	?	NC_002947	= 5484557	67 (1.110)	4 (0.070)	4/248	NT	6.6%	coding (1071/1608 nt)	purH	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
	?	NC_002947	= 5484653	50 (0.890)					coding (1167/1608 nt)	purH	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
*	?	NC_002947	5487124 =	67 (1.110)	4 (0.070)	4/256	NT	5.8%	coding (453/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	5487166 =	65 (1.120)					coding (495/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	5499260 =	64 (1.060)	3 (0.050)	3/248	NT	5.5%	coding (38/720 nt)	cobK	precorrin‑6x reductase
	?	NC_002947	5499339 =	43 (0.770)					coding (117/720 nt)	cobK	precorrin‑6x reductase
*	?	NC_002947	5518889 =	51 (0.850)	3 (0.050)	3/252	NT	5.6%	coding (22/321 nt)	PP_4851	phosphate starvation‑inducible protein PsiF
	?	NC_002947	5518936 =	52 (0.910)					intergenic (‑26/+5)	PP_4851/PP_4852	phosphate starvation‑inducible protein PsiF/AraC family transcriptional regulator
*	?	NC_002947	5545321 =	NA (NA)	69 (1.160)	54/262	NT	100%	intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5621245	0 (0.000)					coding (19/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5545666	NA (NA)	63 (1.070)	54/260	NT	100%	intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	5621244 =	0 (0.000)					coding (20/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	5594092 =	30 (0.500)	7 (0.150)	6/210	NT	20.1%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594185 =	32 (0.680)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5594119	29 (0.480)	5 (0.110)	5/210	NT	15.4%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5594156	32 (0.680)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5637262	74 (1.230)	4 (0.070)	4/258	NT	5.4%	coding (1630/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 5637286	68 (1.170)					coding (1654/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
*	?	NC_002947	= 5642871	69 (1.150)	4 (0.070)	3/254	NT	5.6%	coding (1042/1386 nt)	dbpA	23S rRNA specific ATP‑dependent RNA helicase
	?	NC_002947	= 5642896	70 (1.220)					coding (1067/1386 nt)	dbpA	23S rRNA specific ATP‑dependent RNA helicase
*	?	NC_002947	5671615 =	71 (1.180)	8 (0.160)	6/218	NT	14.7%	intergenic (+34/‑136)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	5671700 =	35 (0.710)					intergenic (+119/‑51)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
*	?	NC_002947	5676552 =	72 (1.200)	5 (0.090)	5/256	NT	6.9%	coding (1453/1860 nt)	PP_4983	amine oxidase
	?	NC_002947	5676621 =	65 (1.120)					coding (1384/1860 nt)	PP_4983	amine oxidase
*	?	NC_002947	= 5693247	71 (1.180)	4 (0.070)	3/262	NT	5.2%	coding (547/570 nt)	PP_4995	exopolysaccharide biosynthesis protein
	?	NC_002947	= 5693277	75 (1.270)					coding (8/426 nt)	PP_4996	Holliday junction resolvase
*	?	NC_002947	5703048 =	83 (1.380)	5 (0.090)	5/258	NT	6.0%	coding (883/1683 nt)	phaC‑II	poly(3‑hydroxyalkanoate) polymerase
	?	NC_002947	5703087 =	76 (1.300)					coding (922/1683 nt)	phaC‑II	poly(3‑hydroxyalkanoate) polymerase
*	?	NC_002947	= 5727585	78 (1.300)	6 (0.100)	6/256	NT	7.6%	coding (1053/1680 nt)	opgG	glucans biosynthesis protein G
	?	NC_002947	= 5727607	70 (1.210)					coding (1031/1680 nt)	opgG	glucans biosynthesis protein G
*	?	NC_002947	= 5734041	53 (0.880)	7 (0.130)	5/242	NT	12.4%	intergenic (‑67/+90)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
	?	NC_002947	= 5734096	51 (0.930)					intergenic (‑122/+35)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
*	?	NC_002947	5745137 =	76 (1.260)	4 (0.070)	4/252	NT	5.7%	coding (728/2451 nt)	glgP	glycogen phosphorylase
	?	NC_002947	5745181 =	60 (1.050)					coding (684/2451 nt)	glgP	glycogen phosphorylase
*	?	NC_002947	5756090 =	70 (1.160)	4 (0.070)	4/258	NT	5.3%	coding (1204/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	5756130 =	75 (1.290)					coding (1244/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
*	?	NC_002947	= 5774063	58 (0.960)	4 (0.070)	4/254	NT	6.6%	coding (626/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	= 5774094	58 (1.010)					coding (657/657 nt)	betI	choline‑responsive transcriptional repressor BetI
*	?	NC_002947	5780398 =	66 (1.100)	4 (0.070)	3/256	NT	6.0%	coding (702/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
	?	NC_002947	5780439 =	62 (1.070)					coding (743/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
*	?	NC_002947	5780703 =	51 (0.850)	3 (0.050)	3/256	NT	5.3%	coding (1007/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
	?	NC_002947	5780737 =	58 (1.000)					coding (1041/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
*	?	NC_002947	= 5789571	72 (1.200)	6 (0.110)	5/248	NT	7.7%	coding (728/1278 nt)	ynfM	efflux transporter
	?	NC_002947	= 5789591	76 (1.360)					coding (748/1278 nt)	ynfM	efflux transporter
*	?	NC_002947	= 5796711	71 (1.180)	9 (0.160)	8/254	NT	11.0%	coding (1189/4446 nt)	gltB	L‑glutamate synthase subunit alpha
	?	NC_002947	= 5796729	78 (1.360)					coding (1171/4446 nt)	gltB	L‑glutamate synthase subunit alpha
*	?	NC_002947	5805040 =	59 (0.980)	3 (0.050)	3/250	NT	5.7%	coding (169/882 nt)	PP_5083	type IV pili biogenesis protein PilM
	?	NC_002947	5805077 =	44 (0.780)					coding (132/882 nt)	PP_5083	type IV pili biogenesis protein PilM
*	?	NC_002947	= 5821448	68 (1.130)	4 (0.070)	4/254	NT	5.6%	coding (69/639 nt)	metW	methionine biosynthesis protein MetW
	?	NC_002947	= 5821512	70 (1.220)					coding (133/639 nt)	metW	methionine biosynthesis protein MetW
*	?	NC_002947	= 5828953	80 (1.330)	5 (0.090)	4/254	NT	6.1%	intergenic (‑102/+10)	rpoH/ftsX	RNA polymerase factor sigma‑32/cell division protein FtsX
	?	NC_002947	= 5828972	78 (1.360)					coding (1017/1026 nt)	ftsX	cell division protein FtsX
*	?	NC_002947	= 5844498	74 (1.230)	4 (0.070)	4/258	NT	5.2%	coding (1120/1599 nt)	PP_5122	GMC family oxidoreductase
	?	NC_002947	= 5844547	74 (1.270)					coding (1169/1599 nt)	PP_5122	GMC family oxidoreductase
*	?	NC_002947	5864409 =	76 (1.260)	4 (0.070)	4/254	NT	5.7%	coding (1742/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
	?	NC_002947	5864474 =	59 (1.030)					coding (1677/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
*	?	NC_002947	= 5874558	36 (0.600)	4 (0.070)	5/244	NT	9.8%	intergenic (‑50/+98)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	= 5874618	41 (0.740)					intergenic (‑110/+38)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
*	?	NC_002947	5874726 =	68 (1.130)	4 (0.070)	4/256	NT	5.3%	coding (1445/1515 nt)	ilvA‑II	threonine deaminase
	?	NC_002947	5874768 =	77 (1.330)					coding (1403/1515 nt)	ilvA‑II	threonine deaminase
*	?	NC_002947	5876984 =	52 (0.860)	4 (0.080)	4/218	NT	8.5%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877066 =	44 (0.890)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	= 5897126	69 (1.150)	5 (0.090)	5/256	NT	7.1%	coding (263/1029 nt)	sbp‑II	sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 5897162	64 (1.110)					coding (227/1029 nt)	sbp‑II	sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 5919152	61 (1.010)	4 (0.070)	4/266	NT	6.4%	coding (151/306 nt)	PP_5189	hypothetical protein
	?	NC_002947	= 5919176	56 (0.930)					coding (175/306 nt)	PP_5189	hypothetical protein
*	?	NC_002947	= 5969511	56 (0.930)	3 (0.050)	3/256	NT	5.9%	coding (1783/2124 nt)	PP_5236	hypothetical protein
	?	NC_002947	= 5969543	42 (0.730)					coding (1751/2124 nt)	PP_5236	hypothetical protein
*	?	NC_002947	= 5970207	73 (1.210)	4 (0.070)	3/256	NT	5.2%	coding (1087/2124 nt)	PP_5236	hypothetical protein
	?	NC_002947	= 5970251	76 (1.310)					coding (1043/2124 nt)	PP_5236	hypothetical protein
*	?	NC_002947	6020430 =	63 (1.050)	7 (0.120)	4/256	NT	11.3%	coding (219/1305 nt)	dadA‑II	D‑amino acid:quinone oxidoreductase
	?	NC_002947	6020475 =	49 (0.850)					coding (174/1305 nt)	dadA‑II	D‑amino acid:quinone oxidoreductase
*	?	NC_002947	6027893 =	92 (1.530)	5 (0.100)	5/224	NT	7.0%	intergenic (‑37/+74)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	6027950 =	55 (1.090)					intergenic (‑94/+17)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
*	?	NC_002947	= 6037064	55 (0.910)	4 (0.070)	4/260	NT	6.7%	coding (172/906 nt)	argB	acetylglutamate kinase
	?	NC_002947	= 6037102	57 (0.970)					coding (210/906 nt)	argB	acetylglutamate kinase
*	?	NC_002947	6077821 =	62 (1.030)	3 (0.060)	3/218	NT	6.0%	intergenic (‑123/+115)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
	?	NC_002947	6077921 =	43 (0.870)					intergenic (‑223/+15)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
*	?	NC_002947	6092350 =	73 (1.210)	4 (0.070)	4/252	NT	5.7%	coding (134/447 nt)	PP_5344	acetyltransferase
	?	NC_002947	6092393 =	63 (1.110)					coding (177/447 nt)	PP_5344	acetyltransferase
*	?	NC_002947	6107943 =	52 (0.860)	7 (0.120)	6/258	NT	14.2%	coding (210/873 nt)	pdxY	pyridoxamine kinase
	?	NC_002947	6107992 =	34 (0.580)					coding (161/873 nt)	pdxY	pyridoxamine kinase
*	?	NC_002947	= 6141453	75 (1.250)	4 (0.070)	4/248	NT	5.1%	coding (1189/3159 nt)	cusA	CzcA family RND family copper transporter
	?	NC_002947	= 6141475	78 (1.390)					coding (1211/3159 nt)	cusA	CzcA family RND family copper transporter