breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	6,332	C→A	7.3%	R17R (CGG→CGT)	trmE ←	GTPase
RA	6,339	T→A	8.9%	Q15L (CAG→CTG)	trmE ←	GTPase
RA	6,346	T→G	9.0%	T13P (ACG→CCG)	trmE ←	GTPase
RA	6,351	A→G	7.5%	I11T (ATC→ACC)	trmE ←	GTPase
RA	6,429	Δ1 bp	9.4%	intergenic (‑47/+42)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	6,433:1	+T	6.7%	intergenic (‑51/+38)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	9,533	G→A	9.3%	intergenic (‑587/‑9)	rpmH ← / → dnaA	50S ribosomal protein L34/chromosomal replication initiator protein
RA	26,837:1	+A	7.7%	intergenic (+33/+152)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	26,844	A→T	7.6%	intergenic (+40/+145)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	27,581	C→T	10.2%	intergenic (‑428/+18)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	27,584	A→G	9.5%	intergenic (‑431/+15)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	42,871	G→C	7.4%	R272T (AGA→ACA)	PP_0039 →	hypothetical protein
RA	43,457	Δ1 bp	11.4%	intergenic (+23/+70)	PP_0040 → / ← cadA‑I	hypothetical protein/cadmium translocating P‑type ATPase
RA	48,872	T→G	10.0%	D168A (GAC→GCC) ‡	czcA‑I ←	cation efflux system protein
RA	48,873	C→A	10.0%	D168Y (GAC→TAC) ‡	czcA‑I ←	cation efflux system protein
RA	58,747	T→A	13.3%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	13.1%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	66,208	Δ1 bp	6.7%	coding (1266/1653 nt)	betA‑I →	choline dehydrogenase
RA	66,209	Δ1 bp	6.6%	coding (1267/1653 nt)	betA‑I →	choline dehydrogenase
RA	81,031	T→G	8.8%	intergenic (+88/‑46)	tsaC → / → PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
RA	81,032	T→A	8.8%	intergenic (+89/‑45)	tsaC → / → PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
RA	81,033	C→A	8.8%	intergenic (+90/‑44)	tsaC → / → PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
RA	86,240	G→T	5.9%	L160M (CTG→ATG)	PP_0075 ←	choline sulfate transporter
RA	86,245	A→C	7.2%	M158R (ATG→AGG)	PP_0075 ←	choline sulfate transporter
RA	127,121	C→G	12.5%	intergenic (‑31/+39)	thrB ← / ← PP_0122	homoserine kinase/hypothetical protein
RA	127,122	C→G	12.5%	intergenic (‑32/+38)	thrB ← / ← PP_0122	homoserine kinase/hypothetical protein
RA	127,123	G→C	12.6%	intergenic (‑33/+37)	thrB ← / ← PP_0122	homoserine kinase/hypothetical protein
RA	128,152	C→T	8.0%	S210S (AGC→AGT)	polA →	DNA polymerase I
RA	156,383	C→T	10.2%	intergenic (‑8/+35)	ygdQ ← / ← citN	transport protein/citrate transporter
RA	156,385	G→A	9.7%	intergenic (‑10/+33)	ygdQ ← / ← citN	transport protein/citrate transporter
RA	156,386	T→C	10.2%	intergenic (‑11/+32)	ygdQ ← / ← citN	transport protein/citrate transporter
RA	156,388	A→G	10.0%	intergenic (‑13/+30)	ygdQ ← / ← citN	transport protein/citrate transporter
RA	170,419	A→G	8.1%	Q274R (CAG→CGG)	PP_0159 →	family III CoA‑transferase
RA	182,034	G→A	10.3%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	10.2%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	10.2%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	195,559	C→A	40.3%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	15.5%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	15.5%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	42.8%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	22.9%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	22.7%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	25.2%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	27.0%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	33.3%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	12.4%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	7.9%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	15.8%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	17.6%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	24.1%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	12.6%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	210,818	G→T	6.6%	G5442C (GGC→TGC)	PP_0168 →	putative surface adhesion protein
RA	213,354	T→A	9.9%	L6287Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	225,366	C→T	9.0%	A99T (GCC→ACC)	PP_0173 ←	transcriptional factor‑like protein
RA	262,940	G→C	9.4%	intergenic (+175/‑310)	PP_0211 → / → gabD‑I	hypothetical protein/succinate‑semialdehyde dehydrogenase
RA	262,942	A→C	9.4%	intergenic (+177/‑308)	PP_0211 → / → gabD‑I	hypothetical protein/succinate‑semialdehyde dehydrogenase
RA	262,944	C→G	9.5%	intergenic (+179/‑306)	PP_0211 → / → gabD‑I	hypothetical protein/succinate‑semialdehyde dehydrogenase
RA	262,946	G→T	9.8%	intergenic (+181/‑304)	PP_0211 → / → gabD‑I	hypothetical protein/succinate‑semialdehyde dehydrogenase
RA	262,948	G→C	11.8%	intergenic (+183/‑302)	PP_0211 → / → gabD‑I	hypothetical protein/succinate‑semialdehyde dehydrogenase
RA	272,007	A→T	12.5%	intergenic (+12/+17)	PP_0218 → / ← metP	sensory box protein/L,D‑methionine D‑methionine ABC transporter permease
RA	272,008	A→T	12.1%	intergenic (+13/+16)	PP_0218 → / ← metP	sensory box protein/L,D‑methionine D‑methionine ABC transporter permease
RA	272,009	A→T	13.5%	intergenic (+14/+15)	PP_0218 → / ← metP	sensory box protein/L,D‑methionine D‑methionine ABC transporter permease
RA	274,082	A→C	5.9%	I163S (ATC→AGC)	PP_0221 ←	methionine ABC transporter substrate‑binding protein
RA	274,085	T→A	6.1%	D162V (GAC→GTC)	PP_0221 ←	methionine ABC transporter substrate‑binding protein
RA	278,742:1	+A	92.7%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	282,578	A→T	6.6%	N10I (AAT→ATT)	betT‑II →	choline/carnitine/betaine transporter
RA	287,067	G→C	6.4%	P19R (CCG→CGG)	tauB‑II ←	taurine ABC transporter ATP‑binding protein
RA	290,815	C→T	7.2%	intergenic (+95/‑125)	PP_0235 → / → ssuE	peroxidase/NAD(P)H‑dependent FMN reductase subunit
RA	305,153	T→G	7.2%	intergenic (+11/+18)	hslR → / ← PP_0251	heat shock protein Hsp15/membrane protein
RA	305,154	G→C	7.5%	intergenic (+12/+17)	hslR → / ← PP_0251	heat shock protein Hsp15/membrane protein
RA	305,155	C→A	9.4%	intergenic (+13/+16)	hslR → / ← PP_0251	heat shock protein Hsp15/membrane protein
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	308,739	A→G	7.0%	intergenic (+1754/‑115)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	322,133	G→A	23.5%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	23.5%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	337,809	A→G	14.9%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,816:1	+A	13.2%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819	A→C	12.3%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	C→G	14.7%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	G→T	12.3%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,827	Δ1 bp	14.3%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,836	C→T	17.6%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	343,510	G→T	7.9%	intergenic (‑66/‑174)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,512:1	+A	8.1%	intergenic (‑68/‑172)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,518	T→C	7.7%	intergenic (‑74/‑166)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,519	G→A	6.3%	intergenic (‑75/‑165)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	344,032	A→G	7.0%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,041	Δ1 bp	10.0%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	9.8%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,140	T→G	8.2%	noncoding (36/76 nt)	PP_t72 ←	tRNA‑Phe
RA	344,141	T→A	9.7%	noncoding (35/76 nt)	PP_t72 ←	tRNA‑Phe
RA	344,142	C→A	8.2%	noncoding (34/76 nt)	PP_t72 ←	tRNA‑Phe
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	357,337	T→A	8.4%	Y228N (TAC→AAC)	tdcG‑I →	L‑serine dehydratase
RA	358,031	G→A	9.3%	*459* (TGA→TAA)	tdcG‑I →	L‑serine dehydratase
RA	362,372	G→C	5.9%	D45E (GAC→GAG) ‡	PP_0301 ←	betainyl‑CoA thiolase
RA	362,374	C→G	5.8%	D45H (GAC→CAC) ‡	PP_0301 ←	betainyl‑CoA thiolase
RA	362,375	C→G	5.8%	L44L (CTG→CTC) ‡	PP_0301 ←	betainyl‑CoA thiolase
RA	362,377	G→C	5.7%	L44V (CTG→GTG) ‡	PP_0301 ←	betainyl‑CoA thiolase
RA	362,755:1	+G	11.8%	coding (728/966 nt)	lcdH ←	L‑carnitine dehydrogenase
RA	372,628	T→C	12.3%	intergenic (+48/‑131)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	375,629	G→A	7.8%	A307T (GCA→ACA)	PP_0312 →	electron transfer flavoprotein subunit alpha
RA	387,791	T→G	13.6%	S311A (TCC→GCC) ‡	glyA‑I →	serine hydroxymethyltransferase
RA	387,792	C→T	11.1%	S311F (TCC→TTC) ‡	glyA‑I →	serine hydroxymethyltransferase
RA	387,798	G→C	10.8%	G313A (GGC→GCC)	glyA‑I →	serine hydroxymethyltransferase
RA	387,804	A→G	10.4%	D315G (GAC→GGC)	glyA‑I →	serine hydroxymethyltransferase
RA	390,782	C→T	6.9%	V352V (GTC→GTT)	soxA →	sarcosine oxidase subunit alpha
RA	401,822	C→A	7.3%	intergenic (+349/+80)	PP_0334 → / ← PP_0335	transposase/glutathione S‑transferase family protein
RA	445,086	T→G	12.7%	intergenic (+59/‑229)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,087	G→A	12.8%	intergenic (+60/‑228)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,088	C→G	15.5%	intergenic (+61/‑227)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,090	T→C	12.5%	intergenic (+63/‑225)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,095	T→C	14.5%	intergenic (+68/‑220)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	460,936	G→C	7.2%	P510R (CCC→CGC)	pqqF ←	coenzyme PQQ synthesis protein F
RA	461,023	C→A	7.5%	R481L (CGG→CTG)	pqqF ←	coenzyme PQQ synthesis protein F
RA	461,030	C→G	9.8%	V479L (GTG→CTG)	pqqF ←	coenzyme PQQ synthesis protein F
RA	461,037	T→G	9.8%	P476P (CCA→CCC)	pqqF ←	coenzyme PQQ synthesis protein F
RA	479,493	A→G	7.2%	intergenic (‑25/+31)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,496	A→T	7.2%	intergenic (‑28/+28)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,499	A→T	7.2%	intergenic (‑31/+25)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,502	C→T	7.3%	intergenic (‑34/+22)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	482,571	T→C	7.7%	D623G (GAC→GGC)	yeaG ←	protein kinase
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	503,592	T→C	7.3%	F208S (TTT→TCT) ‡	PP_0414 →	polyamine ABC transporter permease
RA	503,593	T→A	8.5%	F208L (TTT→TTA) ‡	PP_0414 →	polyamine ABC transporter permease
RA	503,594	G→A	7.3%	D209N (GAC→AAC)	PP_0414 →	polyamine ABC transporter permease
RA	503,813	A→G	12.3%	intergenic (+16/‑135)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,825	Δ1 bp	10.5%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	545,031	C→G	7.9%	P1091A (CCA→GCA)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	546,002	G→A	7.1%	intergenic (+42/‑31)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,007	G→T	7.8%	intergenic (+47/‑26)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,008	A→T	6.7%	intergenic (+48/‑25)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,009	A→C	6.5%	intergenic (+49/‑24)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,014	T→C	6.9%	intergenic (+54/‑19)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	547,203	A→G	12.9%	H18R (CAC→CGC)	fusA →	elongation factor G 1
RA	547,207	T→C	13.2%	V19V (GTT→GTC)	fusA →	elongation factor G 1
RA	547,208	G→A	13.2%	D20N (GAC→AAC)	fusA →	elongation factor G 1
RA	547,212	C→T	13.7%	A21V (GCG→GTG)	fusA →	elongation factor G 1
RA	550,549	C→G	11.8%	intergenic (+30/‑112)	tufB → / → rpsJ	elongation factor Tu‑B/30S ribosomal protein S10
RA	556,978	C→T	8.1%	R9R (CGC→CGT)	rpsN →	30S ribosomal protein S14
RA	556,986	A→C	9.3%	K12T (AAG→ACG)	rpsN →	30S ribosomal protein S14
RA	556,989	G→T	9.3%	R13L (CGT→CTT)	rpsN →	30S ribosomal protein S14
RA	556,997	A→G	9.4%	T16A (ACG→GCG)	rpsN →	30S ribosomal protein S14
RA	558,477	A→C	9.2%	E21D (GAA→GAC)	rplR →	50S ribosomal protein L18
RA	558,478	C→T	9.4%	L22F (CTC→TTC)	rplR →	50S ribosomal protein L18
RA	558,483	A→G	9.7%	E23E (GAA→GAG)	rplR →	50S ribosomal protein L18
RA	558,484	G→T	9.3%	V24F (GTC→TTC)	rplR →	50S ribosomal protein L18
RA	562,607	T→G	8.7%	R111R (CGT→CGG)	rpsD →	30S ribosomal protein S4
RA	565,986	T→A	9.7%	intergenic (+26/‑138)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,987	C→A	9.7%	intergenic (+27/‑137)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,990	T→G	9.6%	intergenic (+30/‑134)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,991	T→A	9.8%	intergenic (+31/‑133)	katA → / → bfr‑I	catalase/bacterioferritin
RA	566,624	A→G	6.4%	intergenic (+36/+37)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,625	T→A	7.7%	intergenic (+37/+36)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,626	C→T	6.5%	intergenic (+38/+35)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,630	A→G	8.2%	intergenic (+42/+31)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	568,250	Δ1 bp	7.8%	coding (1246/2835 nt)	uvrA ←	uvrABC excinuclease protein A
RA	568,254	G→C	8.2%	R414R (CGC→CGG)	uvrA ←	uvrABC excinuclease protein A
RA	568,257:1	+G	8.0%	coding (1239/2835 nt)	uvrA ←	uvrABC excinuclease protein A
RA	572,518	A→G	13.0%	I191T (ATC→ACC)	PP_0486 ←	GntR family transcriptional regulator
RA	572,525	C→T	13.0%	V189M (GTG→ATG)	PP_0486 ←	GntR family transcriptional regulator
RA	574,995	T→C	6.9%	V11A (GTC→GCC)	fdoG →	formate dehydrogenase‑O major subunit
RA	574,998	C→A	8.4%	A12D (GCC→GAC)	fdoG →	formate dehydrogenase‑O major subunit
RA	575,001	C→G	6.9%	A13G (GCC→GGC)	fdoG →	formate dehydrogenase‑O major subunit
RA	575,004	T→G	8.2%	V14G (GTC→GGC)	fdoG →	formate dehydrogenase‑O major subunit
RA	575,007	G→A	7.0%	G15D (GGC→GAC)	fdoG →	formate dehydrogenase‑O major subunit
RA	584,722	C→T	8.1%	L178L (CTG→CTA)	ansA ←	type 1 L‑asparaginase
RA	591,152	G→A	8.6%	S133S (TCG→TCA)	PP_0501 →	NAD‑dependent epimerase/dehydratase family protein
RA	615,566	G→A	8.3%	intergenic (‑81/+85)	xseB ← / ← ribB	exodeoxyribonuclease 7 small subunit/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	615,569	T→C	8.0%	intergenic (‑84/+82)	xseB ← / ← ribB	exodeoxyribonuclease 7 small subunit/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	615,597	G→T	7.5%	intergenic (‑112/+54)	xseB ← / ← ribB	exodeoxyribonuclease 7 small subunit/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	615,599	G→C	7.5%	intergenic (‑114/+52)	xseB ← / ← ribB	exodeoxyribonuclease 7 small subunit/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	615,600	T→G	7.6%	intergenic (‑115/+51)	xseB ← / ← ribB	exodeoxyribonuclease 7 small subunit/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	615,603	C→A	7.5%	intergenic (‑118/+48)	xseB ← / ← ribB	exodeoxyribonuclease 7 small subunit/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	615,604	G→C	7.5%	intergenic (‑119/+47)	xseB ← / ← ribB	exodeoxyribonuclease 7 small subunit/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	615,606	A→C	7.6%	intergenic (‑121/+45)	xseB ← / ← ribB	exodeoxyribonuclease 7 small subunit/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	624,426	Δ1 bp	9.1%	coding (481/702 nt)	PP_0537 ←	transcriptional regulator
RA	624,430:1	+A	10.3%	coding (477/702 nt)	PP_0537 ←	transcriptional regulator
RA	625,062	C→T	8.8%	intergenic (‑156/+27)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,063	A→T	8.5%	intergenic (‑157/+26)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,064	A→T	8.5%	intergenic (‑158/+25)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,065	A→G	8.5%	intergenic (‑159/+24)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	632,035	C→G	7.0%	G469A (GGC→GCC)	aldB‑I ←	aldehyde dehydrogenase
RA	632,038	A→C	6.4%	F468C (TTC→TGC)	aldB‑I ←	aldehyde dehydrogenase
RA	632,040	C→T	6.4%	A467A (GCG→GCA)	aldB‑I ←	aldehyde dehydrogenase
RA	632,043	G→C	6.4%	A466A (GCC→GCG)	aldB‑I ←	aldehyde dehydrogenase
RA	632,046	A→G	7.9%	H465H (CAT→CAC) ‡	aldB‑I ←	aldehyde dehydrogenase
RA	632,048	G→T	7.8%	H465N (CAT→AAT) ‡	aldB‑I ←	aldehyde dehydrogenase
RA	632,051	C→G	6.3%	A464P (GCG→CCG)	aldB‑I ←	aldehyde dehydrogenase
RA	633,010	T→C	9.5%	E144G (GAA→GGA)	aldB‑I ←	aldehyde dehydrogenase
RA	635,444	C→T	7.7%	P584S (CCC→TCC)	PP_0546 →	sigma‑54 dependent transcriptional regulator
RA	650,845	T→A	14.7%	intergenic (‑134/+46)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	650,846	T→A	14.7%	intergenic (‑135/+45)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	650,848	A→T	14.3%	intergenic (‑137/+43)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	672,098	G→A	9.0%	A385T (GCG→ACG)	PP_0573 →	hypothetical protein
RA	685,191	G→A	7.7%	S352S (AGC→AGT) ‡	cadA‑II ←	cadmium translocating P‑type ATPase
RA	685,192	C→G	7.7%	S352T (AGC→ACC) ‡	cadA‑II ←	cadmium translocating P‑type ATPase
RA	685,193	T→C	7.9%	S352G (AGC→GGC) ‡	cadA‑II ←	cadmium translocating P‑type ATPase
RA	699,722	A→G	56.1%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	7.0%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	8.0%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	7.0%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	714,958	G→A	11.0%	intergenic (+24/+53)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,966	T→A	12.9%	intergenic (+32/+45)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,967	T→A	10.7%	intergenic (+33/+44)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,968	T→A	12.1%	intergenic (+34/+43)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,976	T→C	7.7%	intergenic (+42/+35)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	725,706	A→C	6.2%	L65V (TTG→GTG)	PP_0619 ←	branched‑chain amino acid ABC transporter substrate‑binding protein
RA	725,711	G→A	6.3%	P63L (CCG→CTG)	PP_0619 ←	branched‑chain amino acid ABC transporter substrate‑binding protein
RA	725,713	G→T	6.3%	H62Q (CAC→CAA)	PP_0619 ←	branched‑chain amino acid ABC transporter substrate‑binding protein
RA	727,315	C→T	18.9%	W6* (TGG→TAG) ‡	PP_0621 ←	hypothetical protein
RA	727,316	A→T	18.9%	W6R (TGG→AGG) ‡	PP_0621 ←	hypothetical protein
RA	727,317	A→G	18.9%	P5P (CCT→CCC)	PP_0621 ←	hypothetical protein
RA	739,192	G→C	8.0%	A75G (GCG→GGG)	pilD ←	leader peptidase/N‑methyltransferase
RA	739,194	G→A	7.9%	C74C (TGC→TGT)	pilD ←	leader peptidase/N‑methyltransferase
RA	739,197	G→C	7.9%	H73Q (CAC→CAG)	pilD ←	leader peptidase/N‑methyltransferase
RA	739,200	T→C	7.9%	P72P (CCA→CCG) ‡	pilD ←	leader peptidase/N‑methyltransferase
RA	739,202	G→C	7.8%	P72A (CCA→GCA) ‡	pilD ←	leader peptidase/N‑methyltransferase
RA	743,430	G→A	8.3%	intergenic (+109/+165)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,432	A→C	8.0%	intergenic (+111/+163)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,439	T→G	7.9%	intergenic (+118/+156)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,440	T→A	7.8%	intergenic (+119/+155)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,441	C→A	7.8%	intergenic (+120/+154)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,448	G→T	7.4%	intergenic (+127/+147)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,450	T→C	7.7%	intergenic (+129/+145)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	744,240	A→G	7.1%	D32D (GAT→GAC)	PP_0636 ←	cold shock DNA‑binding domain‑containing protein
RA	752,034	C→G	7.3%	F18L (TTC→TTG)	PP_5451 →	hypothetical protein
RA	767,938	A→G	8.5%	T6A (ACC→GCC)	mmuP →	S‑methyl‑L‑methionine transporter
RA	780,556	A→C	8.3%	intergenic (‑86/+36)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,560	G→T	8.5%	intergenic (‑90/+32)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	799,835	A→T	9.1%	L213Q (CTG→CAG)	ispB ←	octaprenyl diphosphate synthase
RA	802,230	C→T	8.9%	R239C (CGC→TGC)	obg →	GTPase Obg
RA	802,770	T→C	8.2%	intergenic (+28/‑58)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,771	C→A	7.6%	intergenic (+29/‑57)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,772	T→G	8.2%	intergenic (+30/‑56)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,773	G→A	8.0%	intergenic (+31/‑55)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	806,327	T→C	10.7%	K335E (AAG→GAG)	PP_0693 ←	hypothetical protein
RA	806,328	G→A	7.0%	L334L (CTC→CTT)	PP_0693 ←	hypothetical protein
RA	812,326	G→A	17.6%	intergenic (‑75/‑153)	PP_0698 ← / → PP_0699	LysR family transcriptional regulator/LysE family transporter
RA	812,329	A→G	16.7%	intergenic (‑78/‑150)	PP_0698 ← / → PP_0699	LysR family transcriptional regulator/LysE family transporter
RA	819,694	T→A	7.3%	A58A (GCT→GCA)	ada →	fused O(6)‑alkylguanine DNA alkyltransferase/transcriptional activator
RA	819,698	G→T	7.0%	E60* (GAG→TAG)	ada →	fused O(6)‑alkylguanine DNA alkyltransferase/transcriptional activator
RA	819,703	T→A	8.1%	A61A (GCT→GCA)	ada →	fused O(6)‑alkylguanine DNA alkyltransferase/transcriptional activator
RA	820,150	G→A	7.4%	A210A (GCG→GCA)	ada →	fused O(6)‑alkylguanine DNA alkyltransferase/transcriptional activator
RA	821,732	T→C	6.5%	V368A (GTG→GCG) ‡	PP_0707 →	hypothetical protein
RA	821,733	G→C	6.7%	V368V (GTG→GTC) ‡	PP_0707 →	hypothetical protein
RA	821,741	A→G	6.8%	N371S (AAC→AGC)	PP_0707 →	hypothetical protein
RA	838,003	Δ1 bp	8.7%	intergenic (‑39/+41)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	838,007:1	+C	8.7%	intergenic (‑43/+37)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	857,884	G→T	8.7%	P314T (CCG→ACG)	phr ←	deoxyribodipyrimidine photolyase
RA	858,322	C→G	6.9%	A168P (GCA→CCA)	phr ←	deoxyribodipyrimidine photolyase
RA	858,325	G→C	7.4%	L167V (CTG→GTG)	phr ←	deoxyribodipyrimidine photolyase
RA	863,898	T→A	11.6%	intergenic (+15/+21)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	863,899	T→A	11.5%	intergenic (+16/+20)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	863,900	T→A	11.6%	intergenic (+17/+19)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	895,198	G→C	6.9%	intergenic (+38/+26)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	900,534	C→A	10.8%	intergenic (+26/+19)	PP_0784 → / ← cysZ	hypothetical protein/sulfate transport protein CysZ
RA	900,535	C→G	11.1%	intergenic (+27/+18)	PP_0784 → / ← cysZ	hypothetical protein/sulfate transport protein CysZ
RA	900,536	T→G	10.5%	intergenic (+28/+17)	PP_0784 → / ← cysZ	hypothetical protein/sulfate transport protein CysZ
RA	948,148	C→T	9.2%	L209L (CTG→TTG)	hmp →	flavohemoprotein
RA	955,118	C→T	13.5%	intergenic (+72/‑241)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,149	A→G	13.3%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	13.8%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	12.5%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	12.5%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	C→T	14.9%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,638	G→A	7.7%	D94N (GAC→AAC)	alaC →	aminotransferase
RA	956,583	G→T	12.9%	intergenic (+16/‑98)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	956,584	A→T	9.8%	intergenic (+17/‑97)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	956,585	A→C	8.1%	intergenic (+18/‑96)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	959,850	A→T	9.1%	D40V (GAC→GTC)	PP_0821 →	hypothetical protein
RA	960,936	C→G	10.6%	G149R (GGA→CGA)	selU ←	tRNA 2‑selenouridine synthase
RA	961,720	A→T	9.1%	L232Q (CTG→CAG)	selD ←	selenide, water dikinase
RA	983,256	T→C	6.6%	V89V (GTT→GTC)	fdx →	ferredoxin
RA	983,263	G→A	6.7%	A92T (GCT→ACT) ‡	fdx →	ferredoxin
RA	983,264	C→G	6.6%	A92G (GCT→GGT) ‡	fdx →	ferredoxin
RA	983,265	T→C	6.8%	A92A (GCT→GCC) ‡	fdx →	ferredoxin
RA	983,272	G→A	6.9%	D95N (GAC→AAC)	fdx →	ferredoxin
RA	998,904	G→A	8.1%	Y405Y (TAC→TAT)	PP_0861 ←	outer membrane ferric siderophore receptor
RA	1,013,241	G→C	22.2%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	24.6%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	23.1%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	23.0%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	22.1%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,025,784	T→G	7.0%	D395A (GAC→GCC)	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,025,788	C→A	7.1%	A394S (GCG→TCG)	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,037,644	C→T	10.8%	C254C (TGC→TGT)	PP_0896 →	carbon‑nitrogen hydrolase family protein
RA	1,042,285	G→A	8.1%	G32D (GGC→GAC)	colS →	integral membrane sensor signal transduction histidine kinase
RA	1,054,809	G→A	8.9%	Y341Y (TAC→TAT) ‡	PP_0913 ←	hypothetical protein
RA	1,054,810	T→C	8.8%	Y341C (TAC→TGC) ‡	PP_0913 ←	hypothetical protein
RA	1,054,813	T→C	8.7%	E340G (GAG→GGG)	PP_0913 ←	hypothetical protein
RA	1,070,246:1	+GA	100%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,260	G→C	17.9%	intergenic (+60/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,263	G→C	17.3%	intergenic (+63/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,286	A→C	8.7%	intergenic (+86/+56)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,287	T→C	8.7%	intergenic (+87/+55)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,292	G→A	9.1%	intergenic (+92/+50)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,298	A→C	9.1%	intergenic (+98/+44)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,071,037	G→C	10.6%	L117V (CTG→GTG)	PP_0928 ←	K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,071,038	G→C	10.7%	H116Q (CAC→CAG)	PP_0928 ←	K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,075,001	G→A	8.1%	A60V (GCC→GTC)	gatC ←	aspartyl/glutamyl‑tRNA(Asn/Gln) amidotransferase subunit C
RA	1,096,480	A→T	8.2%	L161Q (CTG→CAG)	lptB ←	ABC transporter ATP‑binding protein
RA	1,120,469	T→A	7.0%	intergenic (‑211/‑91)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,120,470	T→A	7.1%	intergenic (‑212/‑90)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,120,471	T→A	7.1%	intergenic (‑213/‑89)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,178,751	T→A	8.0%	intergenic (+56/+38)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,752	G→T	8.0%	intergenic (+57/+37)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,753	A→C	8.2%	intergenic (+58/+36)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,754	T→A	8.2%	intergenic (+59/+35)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,189,035	A→G	7.7%	intergenic (+25/+17)	PP_1038 → / ← tatC‑I	hypothetical protein/Sec‑independent protein translocase protein
RA	1,189,651	G→A	12.1%	R55C (CGC→TGC)	tatC‑I ←	Sec‑independent protein translocase protein
RA	1,215,202	A→C	5.4%	L586R (CTG→CGG)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,207	G→T	6.0%	A584A (GCC→GCA) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,209	C→G	6.1%	A584P (GCC→CCC) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,215,211	A→C	6.1%	V583G (GTG→GGG)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,241,527	A→G	10.8%	intergenic (+19/‑73)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,241,531	C→T	11.1%	intergenic (+23/‑69)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,251,506	G→A	6.8%	D112D (GAC→GAT)	PP_1094 ←	electron transport complex protein
RA	1,273,757	A→G	6.9%	I110T (ATC→ACC)	PP_1115 ←	lipoprotein
RA	1,275,087	G→C	20.9%	intergenic (‑284/+28)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,280,831	T→C	8.0%	I77T (ATC→ACC)	PP_5742 →	membrane protein
RA	1,293,369	T→C	10.5%	P324P (CCT→CCC)	PP_1128 →	OmpA family protein
RA	1,318,420	T→A	11.1%	L613Q (CTG→CAG)	PP_1150 →	membrane protein
RA	1,327,121	C→T	44.9%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,336,335	A→G	7.7%	L183L (CTA→CTG)	PP_1161 →	lipoprotein
RA	1,346,864	A→C	9.1%	L10R (CTG→CGG)	udh ←	uronate dehydrogenase
RA	1,350,501	T→A	8.3%	K11N (AAA→AAT) ‡	PP_1176 ←	hypothetical protein
RA	1,350,502	T→A	8.3%	K11I (AAA→ATA) ‡	PP_1176 ←	hypothetical protein
RA	1,360,959	A→G	7.3%	D8G (GAC→GGC)	phoP →	two‑component system DNA‑binding transcriptional regulator
RA	1,360,966	C→A	7.1%	A10A (GCC→GCA)	phoP →	two‑component system DNA‑binding transcriptional regulator
RA	1,360,967	C→G	7.1%	L11V (CTG→GTG) ‡	phoP →	two‑component system DNA‑binding transcriptional regulator
RA	1,360,968	T→G	7.1%	L11R (CTG→CGG) ‡	phoP →	two‑component system DNA‑binding transcriptional regulator
RA	1,377,535	Δ1 bp	6.9%	coding (98/1293 nt)	PP_1201 ←	hypothetical protein
RA	1,377,539	G→C	7.1%	P32A (CCC→GCC)	PP_1201 ←	hypothetical protein
RA	1,377,540	G→C	7.1%	A31A (GCC→GCG) ‡	PP_1201 ←	hypothetical protein
RA	1,377,541	G→C	7.1%	A31G (GCC→GGC) ‡	PP_1201 ←	hypothetical protein
RA	1,382,535	G→T	7.9%	L256I (CTC→ATC)	PP_1204 ←	lipoprotein
RA	1,382,539	A→C	7.5%	D254E (GAT→GAG)	PP_1204 ←	lipoprotein
RA	1,382,939	C→T	8.1%	G121D (GGT→GAT)	PP_1204 ←	lipoprotein
RA	1,394,408	C→G	10.3%	R49G (CGC→GGC)	ruvB →	Holliday junction ATP‑dependent DNA helicase RuvB
RA	1,403,591	T→C	8.7%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,419,548:1	+C	100%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,463,024	A→T	16.7%	intergenic (‑100/+42)	algI ← / ← algL	alginate O‑acetylase AlgI/alginate lyase
RA	1,463,025	A→T	17.3%	intergenic (‑101/+41)	algI ← / ← algL	alginate O‑acetylase AlgI/alginate lyase
RA	1,469,670	A→G	6.7%	V158A (GTC→GCC)	algK ←	alginate biosynthesis protein AlgK
RA	1,488,689	C→A	9.1%	R83S (CGT→AGT)	ybgI →	metal‑binding hydrolase/oxidase
RA	1,491,137	G→C	7.0%	S267T (AGT→ACT)	cysNC →	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
RA	1,491,142:1	+A	7.8%	coding (805/1902 nt)	cysNC →	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
RA	1,492,266	T→C	7.5%	intergenic (+27/+68)	cysNC → / ← imm	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein
RA	1,492,267	T→G	7.5%	intergenic (+28/+67)	cysNC → / ← imm	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein
RA	1,492,268	C→A	8.6%	intergenic (+29/+66)	cysNC → / ← imm	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein
RA	1,492,269	G→A	7.5%	intergenic (+30/+65)	cysNC → / ← imm	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,508,078	G→A	17.6%	intergenic (+17/+45)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,079	G→T	17.7%	intergenic (+18/+44)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,080	A→C	17.7%	intergenic (+19/+43)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,081	T→C	17.6%	intergenic (+20/+42)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,512,830	C→T	10.0%	noncoding (139/376 nt)	PP_mr18 →	RNaseP_bact_a ncRNA
RA	1,513,224	C→T	11.7%	intergenic (+157/‑138)	PP_mr18 → / → mraZ	RNaseP_bact_a ncRNA/cell division/cell wall cluster transcriptional repressor MraZ
RA	1,534,879	G→A	9.2%	intergenic (+70/‑113)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,881	T→G	8.9%	intergenic (+72/‑111)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,883	C→T	9.2%	intergenic (+74/‑109)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,889	T→C	12.9%	intergenic (+80/‑103)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,893	C→T	12.9%	intergenic (+84/‑99)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,898	A→G	14.3%	intergenic (+89/‑94)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,902	G→A	13.7%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,919	G→A	8.5%	intergenic (+110/‑73)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,537,952	A→T	6.5%	intergenic (+14/+19)	PP_1348 → / ← pduO	MutT/nudix family protein/thiamine‑phosphate pyrophosphorylase/ATP:cob(I)alamin adenosyltransferase
RA	1,537,953	A→T	7.6%	intergenic (+15/+18)	PP_1348 → / ← pduO	MutT/nudix family protein/thiamine‑phosphate pyrophosphorylase/ATP:cob(I)alamin adenosyltransferase
RA	1,537,954	A→T	7.0%	intergenic (+16/+17)	PP_1348 → / ← pduO	MutT/nudix family protein/thiamine‑phosphate pyrophosphorylase/ATP:cob(I)alamin adenosyltransferase
RA	1,544,504	T→G	36.1%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,551,282	G→T	9.8%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,551,285	A→C	9.3%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,555,388	A→C	13.2%	intergenic (+26/+48)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,389	T→A	12.6%	intergenic (+27/+47)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,390	G→T	13.2%	intergenic (+28/+46)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,570,422	G→A	13.2%	intergenic (+30/‑158)	pcaF‑I → / → pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
RA	1,572,248	T→C	13.3%	L124L (TTG→CTG) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,572,249	T→A	13.3%	L124* (TTG→TAG) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,572,250	G→A	13.0%	L124L (TTG→TTA) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,598,828	A→G	10.7%	intergenic (‑67/+64)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,831	C→G	8.9%	intergenic (‑70/+61)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,832	T→C	8.9%	intergenic (‑71/+60)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,833	G→A	8.6%	intergenic (‑72/+59)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,834	C→G	8.2%	intergenic (‑73/+58)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,837	C→T	8.6%	intergenic (‑76/+55)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,602,824	T→A	6.7%	V224D (GTC→GAC)	PP_5469 →	SAM‑dependent methyltransferase
RA	1,620,028	G→A	10.0%	R69R (CGC→CGT)	opdH ←	tricarboxylate‑specific outer membrane porin
RA	1,625,207	G→T	18.0%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,625,208	A→C	18.0%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,631,093	T→C	11.6%	intergenic (+27/‑154)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,094	T→G	11.6%	intergenic (+28/‑153)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,095	C→A	11.4%	intergenic (+29/‑152)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,096	G→A	11.1%	intergenic (+30/‑151)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,633,545	T→G	15.1%	V165G (GTC→GGC)	lepB →	signal peptidase I
RA	1,633,552	C→G	20.9%	G167G (GGC→GGG)	lepB →	signal peptidase I
RA	1,633,554	A→T	19.5%	Q168L (CAG→CTG)	lepB →	signal peptidase I
RA	1,633,556	C→G	20.0%	P169A (CCC→GCC)	lepB →	signal peptidase I
RA	1,633,563	C→A	22.8%	A171D (GCC→GAC)	lepB →	signal peptidase I
RA	1,637,325	A→T	11.8%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,326	A→T	12.0%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,639,565	A→G	7.7%	intergenic (‑155/‑156)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,575	C→T	10.0%	intergenic (‑165/‑146)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,576	G→T	10.0%	intergenic (‑166/‑145)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,580	G→A	10.2%	intergenic (‑170/‑141)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,581	T→C	10.0%	intergenic (‑171/‑140)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,585	A→C	10.2%	intergenic (‑175/‑136)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,586	A→G	9.9%	intergenic (‑176/‑135)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,642,077	G→A	6.5%	S32S (AGC→AGT)	PP_1442 ←	hypothetical protein
RA	1,647,927	G→A	100%	Y265Y (TAC→TAT)	oprB‑II ←	carbohydrate‑selective porin
RA	1,665,249	T→G	10.4%	I207L (ATC→CTC)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,250	G→C	10.0%	R206R (CGC→CGG)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,253	T→A	10.2%	E205D (GAA→GAT)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,258	T→A	10.2%	I204F (ATC→TTC)	PP_1459 ←	CBS domain‑containing protein
RA	1,680,491	G→A	7.1%	L104L (CTG→TTG)	PP_1475 ←	CAIB/BAIF family protein
RA	1,683,248	C→G	18.1%	intergenic (+57/‑174)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,683,251	C→G	18.8%	intergenic (+60/‑171)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,697,896	Δ1 bp	6.9%	coding (1929/2289 nt)	PP_1492 →	two‑component system sensor histidine kinase/response regulator
RA	1,703,248	A→G	22.3%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	18.2%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	18.6%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,279	G→A	20.4%	intergenic (+128/‑39)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,284	A→G	20.5%	intergenic (+133/‑34)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,286	C→T	12.7%	intergenic (+135/‑32)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,712,080	A→T	19.2%	intergenic (+71/‑187)	ppc → / → adk	phosphoenolpyruvate carboxylase/adenylate kinase
RA	1,712,951	T→A	8.0%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,952	T→A	8.0%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,717,772	C→A	6.6%	G157G (GGC→GGA)	rsmJ →	ribosomal RNA small subunit methyltransferase J
RA	1,725,845	A→C	8.7%	L773L (CTT→CTG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,727,826	A→C	6.4%	V113G (GTC→GGC)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,736,595	G→T	9.3%	intergenic (‑72/+10)	csdA ← / ← dapD	cysteine desulfurase/2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
RA	1,736,598	A→C	9.7%	intergenic (‑75/+7)	csdA ← / ← dapD	cysteine desulfurase/2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
RA	1,774,627	T→G	10.0%	S604A (TCC→GCC) ‡	PP_1581 →	BNR domain‑containing protein
RA	1,774,628	C→G	10.0%	S604C (TCC→TGC) ‡	PP_1581 →	BNR domain‑containing protein
RA	1,774,629	C→A	10.0%	S604S (TCC→TCA) ‡	PP_1581 →	BNR domain‑containing protein
RA	1,777,524	C→G	8.9%	intergenic (+258/+34)	PP_5476 → / ← PP_1585	hypothetical protein/antidote protein
RA	1,777,525	C→G	8.9%	intergenic (+259/+33)	PP_5476 → / ← PP_1585	hypothetical protein/antidote protein
RA	1,784,030	G→A	10.8%	A16V (GCG→GTG) ‡	glnD ←	uridylyltransferase
RA	1,784,031	C→G	11.1%	A16P (GCG→CCG) ‡	glnD ←	uridylyltransferase
RA	1,784,032	C→G	11.1%	Q15H (CAG→CAC) ‡	glnD ←	uridylyltransferase
RA	1,784,033	T→C	11.5%	Q15R (CAG→CGG) ‡	glnD ←	uridylyltransferase
RA	1,789,832	A→T	9.7%	S184C (AGC→TGC)	cdsA →	CTP:phosphatidate cytidyltransferase
RA	1,792,321	G→A	8.7%	G324D (GGC→GAC)	rseP →	regulatory intramembrane protein RIP
RA	1,797,343	A→G	7.8%	K15R (AAG→AGG) ‡	lpxA →	acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase
RA	1,797,344	G→C	7.7%	K15N (AAG→AAC) ‡	lpxA →	acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase
RA	1,797,345	C→T	7.8%	L16L (CTG→TTG)	lpxA →	acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase
RA	1,807,190	C→G	9.8%	I291M (ATC→ATG)	pyrG →	CTP synthase
RA	1,807,193	C→G	10.9%	A292A (GCC→GCG)	pyrG →	CTP synthase
RA	1,810,336	C→A	10.1%	intergenic (+97/‑72)	eno → / → ftsB	enolase/cell division protein
RA	1,814,541	A→T	10.0%	intergenic (+41/‑72)	frmC → / → ispF	S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase/2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
RA	1,818,484	A→G	8.0%	Y209C (TAC→TGC)	PP_1622 →	M23B subfamily metallopeptidase
RA	1,818,492	A→G	7.3%	N212D (AAC→GAC)	PP_1622 →	M23B subfamily metallopeptidase
RA	1,818,497	C→T	7.2%	R213R (CGC→CGT)	PP_1622 →	M23B subfamily metallopeptidase
RA	1,842,287	A→G	100%	L836P (CTG→CCG)	gacS ←	sensor protein GacS
RA	1,846,297	Δ1 bp	9.1%	coding (588/1377 nt)	pfeS‑II →	histidine kinase
RA	1,846,303:1	+A	10.0%	coding (594/1377 nt)	pfeS‑II →	histidine kinase
RA	1,851,115	A→C	12.2%	A67A (GCA→GCC)	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	1,851,116	G→T	12.2%	G68C (GGC→TGC)	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	1,853,466	T→C	10.8%	L63P (CTG→CCG)	mazG →	modified nucleoside triphosphate pyrophosphohydrolase
RA	1,892,225	C→A	12.1%	P156Q (CCG→CAG)	PP_1697 →	transcriptional regulator, GntR family
RA	1,892,228	T→G	12.9%	L157R (CTG→CGG)	PP_1697 →	transcriptional regulator, GntR family
RA	1,892,526	C→G	15.0%	intergenic (+36/‑59)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,892,527	T→C	15.0%	intergenic (+37/‑58)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,892,528	G→A	15.0%	intergenic (+38/‑57)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,892,529	C→G	15.0%	intergenic (+39/‑56)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,903,708	C→A	9.5%	intergenic (+233/‑38)	PP_1703 → / → nirB	assimilatory nitrate reductase/sulfite reductase/nitrite reductase large subunit
RA	1,914,237	C→G	9.1%	P202A (CCG→GCG) ‡	pcaQ →	transcriptional regulator PcaQ
RA	1,914,239	G→C	9.3%	P202P (CCG→CCC) ‡	pcaQ →	transcriptional regulator PcaQ
RA	1,914,241	C→G	9.3%	A203G (GCC→GGC)	pcaQ →	transcriptional regulator PcaQ
RA	1,914,247	C→G	8.9%	T205S (ACC→AGC)	pcaQ →	transcriptional regulator PcaQ
RA	1,915,015	G→A	8.1%	E66K (GAA→AAA)	fklB‑II →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	1,921,549	T→A	18.6%	intergenic (+24/+37)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,921,550	T→A	21.0%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,933,664	G→T	10.6%	R30R (CGC→CGA)	minD ←	MinC‑MinD‑MinE system ATPase
RA	1,933,669	G→C	10.9%	L29V (CTG→GTG)	minD ←	MinC‑MinD‑MinE system ATPase
RA	1,944,529	C→A	9.1%	intergenic (+30/+232)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,944,530	T→C	9.1%	intergenic (+31/+231)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,944,531	T→A	9.1%	intergenic (+32/+230)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,944,532	G→A	9.1%	intergenic (+33/+229)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,944,533	T→G	9.1%	intergenic (+34/+228)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,953,927	C→T	11.4%	A84V (GCC→GTC)	PP_1752 →	hypothetical protein
RA	1,963,789	A→T	13.0%	M1M (ATG→TTG) †‡	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,790	T→A	13.0%	M1K (ATG→AAG) †‡	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,794	A→C	13.3%	A2A (GCA→GCC)	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,796	A→T	13.3%	N3I (AAT→ATT)	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,798	G→T	14.8%	G4C (GGC→TGC)	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,802	T→A	12.8%	L5Q (CTA→CAA) ‡	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,803	A→T	12.8%	L5L (CTA→CTT) ‡	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,981,092	T→G	14.0%	intergenic (+31/‑269)	rpsA → / → ihfB	30S ribosomal protein S1/integration host factor subunit beta
RA	1,981,093	C→A	14.3%	intergenic (+32/‑268)	rpsA → / → ihfB	30S ribosomal protein S1/integration host factor subunit beta
RA	1,989,571	G→C	6.1%	G274A (GGT→GCT) ‡	PP_1780 →	mannosyltransferase
RA	1,989,572	T→C	7.7%	G274G (GGT→GGC) ‡	PP_1780 →	mannosyltransferase
RA	1,989,577	A→T	5.9%	H276L (CAC→CTC)	PP_1780 →	mannosyltransferase
RA	1,989,797	C→T	8.0%	A349A (GCC→GCT)	PP_1780 →	mannosyltransferase
RA	1,993,603	C→G	7.3%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	2,010,130	G→A	8.1%	A435V (GCG→GTG)	PP_1792 ←	group 2 family glycosyl transferase
RA	2,013,530	C→T	9.0%	L164L (TTG→TTA)	PP_1793 ←	group 2 family glycosyl transferase
RA	2,063,192	C→A	10.7%	intergenic (+49/‑158)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,193	A→C	14.5%	intergenic (+50/‑157)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,194	T→C	10.8%	intergenic (+51/‑156)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,201	G→A	10.8%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,221	T→G	9.7%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,064,594	T→A	11.1%	Q135L (CAG→CTG)	PP_1841 ←	cytochrome c family protein
RA	2,071,213	C→G	12.5%	intergenic (+165/+62)	PP_1846 → / ← PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
RA	2,082,281	T→A	7.4%	*318L (TAA→TTA)	PP_1861 ←	LysR family transcriptional regulator
RA	2,085,589	C→T	12.2%	intergenic (+298/‑297)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,085,591	A→G	11.3%	intergenic (+300/‑295)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,085,592	C→T	11.3%	intergenic (+301/‑294)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,085,594	A→G	11.4%	intergenic (+303/‑292)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,110,150	T→C	6.9%	D1379G (GAC→GGC)	PP_1882 ←	membrane protein
RA	2,110,166	G→A	7.2%	R1374C (CGC→TGC)	PP_1882 ←	membrane protein
RA	2,113,676	G→T	11.1%	Q204K (CAG→AAG)	PP_1882 ←	membrane protein
RA	2,113,679	A→C	10.8%	Y203D (TAT→GAT)	PP_1882 ←	membrane protein
RA	2,131,450	G→T	10.3%	T250K (ACG→AAG) ‡	fimD ←	type I pili subunit FimD
RA	2,131,451	T→G	10.3%	T250P (ACG→CCG) ‡	fimD ←	type I pili subunit FimD
RA	2,131,452	C→A	10.0%	L249L (CTG→CTT) ‡	fimD ←	type I pili subunit FimD
RA	2,131,453	A→C	10.0%	L249R (CTG→CGG) ‡	fimD ←	type I pili subunit FimD
RA	2,141,208	T→C	8.1%	L315P (CTT→CCT)	PP_1897 →	DNA internalization‑related competence protein ComEC/Rec2
RA	2,154,386	T→G	7.2%	Q129P (CAG→CCG)	PP_1909 ←	septum formation protein
RA	2,154,391	T→A	7.3%	Q127H (CAA→CAT)	PP_1909 ←	septum formation protein
RA	2,154,396	C→A	7.0%	G126W (GGG→TGG)	PP_1909 ←	septum formation protein
RA	2,160,524	A→G	9.5%	S88G (AGC→GGC)	pabC →	4‑amino‑4‑deoxychorismate lyase
RA	2,160,541	G→A	9.1%	A93A (GCG→GCA)	pabC →	4‑amino‑4‑deoxychorismate lyase
RA	2,189,641	A→C	9.3%	N170H (AAC→CAC)	PP_1937 →	helicase
RA	2,189,646	G→T	9.8%	V171V (GTG→GTT)	PP_1937 →	helicase
RA	2,200,475	C→T	8.1%	Q17* (CAA→TAA)	folD‑I →	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,227,422	T→A	8.9%	intergenic (‑21/‑426)	PP_1964 ← / → holB	dGMP/dTMP/dhydroxyCMP kinase/DNA polymerase III subunit delta'
RA	2,271,666	C→T	8.7%	intergenic (+50/‑50)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,271,667	A→G	8.7%	intergenic (+51/‑49)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,273,052	A→G	18.5%	intergenic (+17/+274)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,062	C→G	18.9%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,066	A→T	20.2%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,070	C→G	20.0%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,538	T→C	7.1%	K277E (AAG→GAG)	PP_2004 ←	AraC family transcriptional regulator
RA	2,273,543	C→A	7.3%	R275L (CGC→CTC)	PP_2004 ←	AraC family transcriptional regulator
RA	2,273,545	C→G	7.1%	L274F (TTG→TTC)	PP_2004 ←	AraC family transcriptional regulator
RA	2,278,822	T→A	15.4%	intergenic (‑243/‑39)	PP_2007 ← / → fadH	P‑47‑like protein/2,4‑dienoyl‑CoA reductase
RA	2,282,779	C→A	14.1%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,289,100	C→T	8.5%	D461D (GAC→GAT)	pepN →	aminopeptidase N
RA	2,301,426	T→A	8.4%	intergenic (‑70/‑261)	sbcD ← / → PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
RA	2,301,427	G→C	8.3%	intergenic (‑71/‑260)	sbcD ← / → PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
RA	2,301,428	T→A	9.8%	intergenic (‑72/‑259)	sbcD ← / → PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
RA	2,340,703	A→C	14.0%	intergenic (+37/‑78)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,340,707	G→A	12.4%	intergenic (+41/‑74)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,340,708	T→A	12.2%	intergenic (+42/‑73)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,340,709	T→C	12.4%	intergenic (+43/‑72)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,340,713	G→T	11.1%	intergenic (+47/‑68)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,361,719	C→G	14.6%	G720R (GGC→CGC)	PP_2076 ←	hypothetical protein
RA	2,361,724	C→G	15.0%	R718P (CGG→CCG)	PP_2076 ←	hypothetical protein
RA	2,385,477	Δ1 bp	13.5%	coding (401/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,385,483:1	+A	14.7%	coding (395/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,386,384	A→C	12.0%	R240R (CGT→CGG)	PP_2094 ←	nitrate‑binding protein NasS
RA	2,398,675	T→A	10.3%	T328S (ACC→TCC)	PP_2100 ←	two‑component system sensor protein
RA	2,408,660	C→G	19.5%	intergenic (‑96/+46)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,408,661	C→G	22.3%	intergenic (‑97/+45)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,408,662	C→G	19.4%	intergenic (‑98/+44)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,408,663	C→G	19.4%	intergenic (‑99/+43)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,414,986	T→A	13.4%	Y62N (TAT→AAT) ‡	PP_2115 →	hypothetical protein
RA	2,414,987	A→T	13.4%	Y62F (TAT→TTT) ‡	PP_2115 →	hypothetical protein
RA	2,414,988	T→A	13.8%	Y62* (TAT→TAA) ‡	PP_2115 →	hypothetical protein
RA	2,437,203	Δ1 bp	9.3%	coding (123/2148 nt)	fadB →	enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
RA	2,445,681	G→A	15.4%	intergenic (‑170/‑46)	lexA‑I ← / → PP_2144	transcriptional repressor/TetR family transcriptional regulator
RA	2,445,684	T→C	16.4%	intergenic (‑173/‑43)	lexA‑I ← / → PP_2144	transcriptional repressor/TetR family transcriptional regulator
RA	2,467,955	T→A	9.1%	intergenic (+14/+18)	queF → / ← PP_2161	NADPH‑dependent 7‑cyano‑7‑deazaguanine reductase/hypothetical protein
RA	2,467,957	T→A	9.0%	intergenic (+16/+16)	queF → / ← PP_2161	NADPH‑dependent 7‑cyano‑7‑deazaguanine reductase/hypothetical protein
RA	2,469,851	A→T	6.7%	intergenic (+20/+15)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,852	A→T	6.7%	intergenic (+21/+14)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,853	A→T	6.7%	intergenic (+22/+13)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,488,197	G→C	6.9%	intergenic (+53/‑349)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,488,203	G→A	8.9%	intergenic (+59/‑343)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,492,438	C→T	7.5%	Q621* (CAG→TAG)	PP_2185 →	formate dehydrogenase subunit alpha
RA	2,498,215	A→G	11.7%	H39R (CAC→CGC) ‡	PP_2193 →	ferric siderophore receptor
RA	2,498,216	C→T	11.3%	H39H (CAC→CAT) ‡	PP_2193 →	ferric siderophore receptor
RA	2,498,778	T→C	10.2%	F227L (TTC→CTC)	PP_2193 →	ferric siderophore receptor
RA	2,522,878	C→A	9.1%	L1377M (CTG→ATG)	PP_2212 →	leucine‑rich repeat‑containing protein
RA	2,523,472	A→C	10.3%	D65A (GAT→GCT)	PP_2213 →	acyl‑CoA synthetase
RA	2,523,475	G→T	10.3%	G66V (GGT→GTT)	PP_2213 →	acyl‑CoA synthetase
RA	2,535,933	T→C	12.5%	D64G (GAC→GGC)	mrpC ←	K(+)/H(+) antiporter subunit C
RA	2,555,170	A→G	11.1%	Q384R (CAG→CGG)	PP_2240 →	ABC transporter permease/ATP‑binding protein
RA	2,555,175	C→T	9.2%	R386C (CGC→TGC)	PP_2240 →	ABC transporter permease/ATP‑binding protein
RA	2,584,610	G→T	10.0%	intergenic (+97/+30)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,584,611	C→T	8.3%	intergenic (+98/+29)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,584,612	A→G	8.3%	intergenic (+99/+28)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,584,613	A→C	8.3%	intergenic (+100/+27)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,593,944	C→T	13.7%	R10C (CGC→TGC)	PP_5510 →	hypothetical protein
RA	2,612,184	T→A	11.8%	S375T (TCC→ACC)	PP_2287 →	internal core protein
RA	2,650,160	A→T	11.3%	intergenic (+99/+35)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,650,161	A→T	11.1%	intergenic (+100/+34)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,664,759	G→A	6.6%	A208T (GCA→ACA)	acnA‑II →	aconitate hydratase
RA	2,694,976	C→G	14.3%	H423D (CAC→GAC)	PP_2362 →	usher protein
RA	2,694,980	A→T	14.3%	Q424L (CAG→CTG)	PP_2362 →	usher protein
RA	2,694,984	C→G	11.8%	V425V (GTC→GTG)	PP_2362 →	usher protein
RA	2,747,196	C→T	10.2%	Q191Q (CAG→CAA)	PP_2402 ←	sensor histidine kinase
RA	2,755,080:1	+C	10.5%	coding (1406/3147 nt)	czcA‑II →	cation efflux system protein
RA	2,755,085	G→C	10.5%	G471R (GGG→CGG) ‡	czcA‑II →	cation efflux system protein
RA	2,755,086	G→C	10.5%	G471A (GGG→GCG) ‡	czcA‑II →	cation efflux system protein
RA	2,755,091	Δ1 bp	10.0%	coding (1417/3147 nt)	czcA‑II →	cation efflux system protein
RA	2,764,456	G→A	11.9%	R182R (CGC→CGT)	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,764,460	G→C	11.9%	T181S (ACC→AGC) ‡	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,764,461	T→A	11.6%	T181S (ACC→TCC) ‡	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,764,462	G→C	11.9%	G180G (GGC→GGG)	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,764,466	T→C	11.6%	D179G (GAC→GGC)	PP_2418 ←	cobalamin ABC transporter substrate‑binding protein
RA	2,790,908	G→A	8.1%	L214L (CTG→TTG)	sstT ←	serine/threonine transporter SstT
RA	2,790,924	G→A	8.5%	L208L (CTC→CTT)	sstT ←	serine/threonine transporter SstT
RA	2,793,707	C→G	7.6%	intergenic (+16/+111)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,708	T→A	6.3%	intergenic (+17/+110)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,709	C→G	7.1%	intergenic (+18/+109)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,799,186	C→T	13.1%	intergenic (‑200/+16)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,817,106	T→G	8.2%	intergenic (+26/+97)	PP_t44 → / ← PP_5526	tRNA‑Pro/hypothetical protein
RA	2,826,825	G→C	12.5%	A80P (GCA→CCA)	PP_2479 →	cytochrome c family protein
RA	2,826,830	G→C	12.4%	W81C (TGG→TGC)	PP_2479 →	cytochrome c family protein
RA	2,831,538	T→C	14.4%	intergenic (‑8/+131)	PP_2484 ← / ← PP_2485	ArsR family transcriptional regulator/hypothetical protein
RA	2,848,623	T→C	7.8%	Q8Q (CAA→CAG)	PP_2501 ←	integrase
RA	2,878,338	T→C	10.8%	H223R (CAC→CGC)	PP_2533 ←	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,941,692	C→T	7.1%	intergenic (+12/+34)	PP_2574 → / ← PP_2575	LysR family transcriptional regulator/hypothetical protein
RA	2,941,695	C→T	7.3%	intergenic (+15/+31)	PP_2574 → / ← PP_2575	LysR family transcriptional regulator/hypothetical protein
RA	2,941,698	G→T	7.0%	intergenic (+18/+28)	PP_2574 → / ← PP_2575	LysR family transcriptional regulator/hypothetical protein
RA	2,951,334	G→C	19.4%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	19.4%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	19.4%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	19.1%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
JC	2,957,081	Δ84 bp	33.1%	intergenic (+36/‑77)	PP_2588 → / → PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
RA	2,958,799	G→C	13.4%	intergenic (+65/+77)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,800	T→C	13.3%	intergenic (+66/+76)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,803	G→C	13.0%	intergenic (+69/+73)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,806	G→A	12.9%	intergenic (+72/+70)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,807	G→C	13.0%	intergenic (+73/+69)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,816	G→A	10.8%	intergenic (+82/+60)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,972,594	G→A	13.3%	T427M (ACG→ATG)	PP_2600 ←	hypothetical protein
RA	2,981,152	T→C	9.3%	K405E (AAG→GAG)	PP_2607 ←	hypothetical protein
RA	2,988,366	G→A	12.8%	S11S (TCC→TCT)	PP_2612 ←	membrane protein
RA	2,989,864	C→T	8.0%	G539D (GGC→GAC)	vgrG‑I ←	type VI secretion system protein
RA	3,008,885	C→T	11.4%	W70* (TGG→TGA)	PP_2628 ←	ABC transporter ATP‑binding protein
RA	3,011,110	G→T	6.9%	K57N (AAG→AAT)	bcsG →	endoglucanase
RA	3,011,111	T→A	6.9%	W58R (TGG→AGG) ‡	bcsG →	endoglucanase
RA	3,011,112	G→C	6.8%	W58S (TGG→TCG) ‡	bcsG →	endoglucanase
RA	3,011,115	T→A	6.9%	L59Q (CTG→CAG)	bcsG →	endoglucanase
RA	3,011,118	G→C	6.9%	R60P (CGT→CCT) ‡	bcsG →	endoglucanase
RA	3,011,119	T→A	6.8%	R60R (CGT→CGA) ‡	bcsG →	endoglucanase
RA	3,011,120	A→C	6.6%	I61L (ATT→CTT)	bcsG →	endoglucanase
RA	3,024,308	T→A	12.5%	intergenic (+123/+31)	dapA‑II → / ← PP_2640	4‑hydroxy‑tetrahydrodipicolinate synthase/GNAT family acetyltransferase
RA	3,024,309	T→A	12.5%	intergenic (+124/+30)	dapA‑II → / ← PP_2640	4‑hydroxy‑tetrahydrodipicolinate synthase/GNAT family acetyltransferase
RA	3,024,310	T→A	12.5%	intergenic (+125/+29)	dapA‑II → / ← PP_2640	4‑hydroxy‑tetrahydrodipicolinate synthase/GNAT family acetyltransferase
RA	3,038,493	C→T	8.7%	F255F (TTC→TTT)	gbd →	4‑hydroxybutyrate dehydrogenase
RA	3,038,495	A→T	8.9%	Q256L (CAG→CTG)	gbd →	4‑hydroxybutyrate dehydrogenase
RA	3,038,497	A→G	8.5%	K257E (AAA→GAA)	gbd →	4‑hydroxybutyrate dehydrogenase
RA	3,044,933	A→G	12.9%	S159G (AGC→GGC)	pstC →	phosphate ABC transporter permease
RA	3,045,549	G→A	8.9%	P42P (CCG→CCA)	pstA →	phosphate ABC transporter permease
RA	3,051,838	T→A	12.7%	Y180N (TAC→AAC) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,051,839	A→G	12.2%	Y180C (TAC→TGC) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,051,844	C→T	12.7%	L182L (CTG→TTG) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,051,845	T→A	12.3%	L182Q (CTG→CAG) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,057,280	G→T	8.5%	A23D (GCC→GAC)	PP_2669 ←	outer membrane protein
RA	3,057,282	C→G	8.5%	L22L (CTG→CTC) ‡	PP_2669 ←	outer membrane protein
RA	3,057,283	A→G	8.1%	L22P (CTG→CCG) ‡	PP_2669 ←	outer membrane protein
RA	3,057,289	A→C	7.5%	L20R (CTG→CGG) ‡	PP_2669 ←	outer membrane protein
RA	3,057,290	G→T	8.9%	L20M (CTG→ATG) ‡	PP_2669 ←	outer membrane protein
RA	3,057,297	C→G	9.5%	S17S (TCG→TCC) ‡	PP_2669 ←	outer membrane protein
RA	3,057,299	A→C	9.6%	S17A (TCG→GCG) ‡	PP_2669 ←	outer membrane protein
RA	3,071,955	T→C	9.3%	S270P (TCG→CCG)	yiaY →	Fe‑containing alcohol dehydrogenase
RA	3,071,959	A→C	8.6%	H271P (CAC→CCC)	yiaY →	Fe‑containing alcohol dehydrogenase
RA	3,071,963	C→G	10.4%	S272R (AGC→AGG)	yiaY →	Fe‑containing alcohol dehydrogenase
RA	3,129,240	G→A	9.7%	E163K (GAA→AAA)	dmoA‑I →	dimethyl‑sulfide monooxygenase
RA	3,138,948	A→G	9.3%	S363G (AGC→GGC)	PP_2754 →	OprD family outer membrane porin
RA	3,139,356	C→T	7.5%	intergenic (+145/‑91)	PP_2754 → / → sfnB	OprD family outer membrane porin/SfnB family sulfur acquisition oxidoreductase
RA	3,141,130	C→A	12.5%	A16E (GCG→GAG)	PP_2757 →	sugar‑binding protein
RA	3,146,578	G→C	7.4%	intergenic (+14/+52)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,579	G→C	7.3%	intergenic (+15/+51)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,611	T→C	11.1%	intergenic (+47/+19)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,614	G→A	11.3%	intergenic (+50/+16)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,173,382	C→T	10.8%	T296I (ACC→ATC)	PP_2785 →	hypothetical protein
RA	3,177,526	Δ1 bp	11.1%	coding (237/384 nt)	PP_2788 ←	MerR family transcriptional regulator
RA	3,178,156	C→T	89.2%	D126N (GAT→AAT)	PP_2789 ←	oxidoreductase
RA	3,193,312	G→A	8.3%	A50V (GCG→GTG)	prr ←	gamma‑aminobutyraldehyde dehydrogenase
RA	3,198,902	A→T	16.1%	intergenic (‑246/+31)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,198,906	A→T	16.2%	intergenic (‑250/+27)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,198,910	A→T	17.2%	intergenic (‑254/+23)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,202,240	T→C	63.0%	G63G (GGT→GGC)	PP_2809 →	membrane protein
RA	3,204,580	A→G	9.5%	D444G (GAT→GGT)	PP_2810 →	hypothetical protein
RA	3,235,000	T→C	9.1%	V32A (GTG→GCG) ‡	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,235,001	G→A	9.5%	V32V (GTG→GTA) ‡	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,235,252	Δ1 bp	9.8%	coding (347/1542 nt)	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,235,258:1	+A	10.3%	coding (353/1542 nt)	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,236,450	G→A	10.2%	intergenic (+3/‑57)	PP_2834 → / → PP_2835	D‑galactarate dehydratase/altronate dehydratase/putative oxidoreductase
RA	3,237,300	T→G	10.0%	L265R (CTG→CGG)	PP_2835 →	putative oxidoreductase
RA	3,237,304	G→C	9.5%	V266V (GTG→GTC)	PP_2835 →	putative oxidoreductase
RA	3,237,306	T→A	9.5%	I267N (ATT→AAT)	PP_2835 →	putative oxidoreductase
RA	3,237,308	G→C	9.5%	D268H (GAC→CAC)	PP_2835 →	putative oxidoreductase
RA	3,237,312	C→A	9.5%	P269Q (CCG→CAG)	PP_2835 →	putative oxidoreductase
RA	3,246,443	A→T	13.9%	Q233L (CAG→CTG)	PP_2841 →	site‑specific recombinase
RA	3,246,446	T→C	14.3%	V234A (GTG→GCG)	PP_2841 →	site‑specific recombinase
RA	3,252,552	T→A	11.8%	intergenic (+82/+161)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,266,111	G→C	11.0%	intergenic (+28/+31)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,113	A→T	11.0%	intergenic (+30/+29)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,114	A→T	10.7%	intergenic (+31/+28)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,116	G→C	10.9%	intergenic (+33/+26)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,271,650	G→A	7.8%	I145I (ATC→ATT)	PP_2869 ←	FMN‑binding oxidoreductase
RA	3,273,641	G→C	17.3%	G106A (GGC→GCC)	PP_2871 →	class II aldolase/adducin domain‑containing protein
RA	3,276,169	A→T	11.8%	E61D (GAA→GAT)	PP_2874 →	hypothetical protein
RA	3,280,328	T→G	9.8%	E101A (GAA→GCA)	PP_2880 ←	TetR family transcriptional regulator
RA	3,293,032	C→G	6.7%	A772A (GCC→GCG)	PP_2893 →	hypothetical protein
RA	3,293,034	T→A	6.7%	L773Q (CTG→CAG)	PP_2893 →	hypothetical protein
RA	3,293,036	C→G	6.4%	R774G (CGC→GGC)	PP_2893 →	hypothetical protein
RA	3,304,763	A→G	11.3%	intergenic (+16/+16)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,304,764	C→G	11.6%	intergenic (+17/+15)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,304,765	C→T	11.6%	intergenic (+18/+14)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,342,688	C→G	9.8%	K5N (AAG→AAC)	yoeB ←	YefM‑YoeB antitoxin/toxin complex toxin/DNA‑binding transcriptional repressor
RA	3,342,964	G→A	9.0%	Q15* (CAG→TAG)	yefM ←	YoeB‑YefM toxin‑antitoxin system antitoxin/DNA‑binding transcriptional repressor
RA	3,344,839	T→C	11.3%	D97G (GAC→GGC)	PP_2941 ←	hypothetical protein
RA	3,352,093	G→A	7.9%	E119K (GAA→AAA)	PP_2947 →	transcriptional regulator MvaT
RA	3,352,104	G→A	8.1%	V122V (GTG→GTA)	PP_2947 →	transcriptional regulator MvaT
RA	3,357,719	T→C	12.1%	L256P (CTC→CCC)	PP_2953 →	alcohol dehydrogenase
RA	3,380,705	T→C	10.0%	L126P (CTT→CCT)	tnpT‑I →	cointegrate resolution protein T
RA	3,380,707	C→G	9.8%	Q127E (CAG→GAG) ‡	tnpT‑I →	cointegrate resolution protein T
RA	3,380,709	G→A	10.0%	Q127Q (CAG→CAA) ‡	tnpT‑I →	cointegrate resolution protein T
RA	3,388,806	G→A	12.0%	R291R (CGC→CGT) ‡	PP_2991 ←	hypothetical protein
RA	3,388,807	C→T	12.0%	R291H (CGC→CAC) ‡	PP_2991 ←	hypothetical protein
RA	3,388,818	A→G	13.0%	H287H (CAT→CAC) ‡	PP_2991 ←	hypothetical protein
RA	3,388,819	T→C	13.0%	H287R (CAT→CGT) ‡	PP_2991 ←	hypothetical protein
RA	3,391,841	A→T	8.0%	K351* (AAA→TAA)	PP_2994 →	FMN‑binding oxidoreductase
RA	3,414,456	C→G	7.8%	T489S (ACT→AGT)	PP_3026 →	recombinase
RA	3,414,458	T→A	8.3%	F490I (TTC→ATC)	PP_3026 →	recombinase
RA	3,419,194	T→G	10.0%	Y51S (TAC→TCC)	PP_5553 ←	hypothetical protein
RA	3,424,890	C→G	8.1%	intergenic (+478/‑34)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,424,892	T→C	8.8%	intergenic (+480/‑32)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,424,895	C→G	9.1%	intergenic (+483/‑29)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,430,349	G→C	7.7%	S189S (TCG→TCC)	PP_3045 →	ATP‑dependent protease ClpP
RA	3,430,575	T→G	18.4%	L265V (TTG→GTG)	PP_3045 →	ATP‑dependent protease ClpP
RA	3,430,582	C→A	17.2%	T267N (ACC→AAC)	PP_3045 →	ATP‑dependent protease ClpP
RA	3,430,584	C→A	17.3%	Q268K (CAG→AAG)	PP_3045 →	ATP‑dependent protease ClpP
RA	3,440,133	G→A	10.2%	G352D (GGC→GAC)	PP_3059 →	tail sheath protein
RA	3,466,841	T→G	15.1%	intergenic (‑16/+108)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,466,843	C→A	17.6%	intergenic (‑18/+106)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,475,489	G→C	19.6%	H408Q (CAC→CAG) ‡	PP_3087 ←	excinuclease ABC subunit A
RA	3,475,491	G→T	22.1%	H408N (CAC→AAC) ‡	PP_3087 ←	excinuclease ABC subunit A
RA	3,475,492	C→G	23.5%	L407F (TTG→TTC)	PP_3087 ←	excinuclease ABC subunit A
RA	3,475,495	G→C	23.6%	G406G (GGC→GGG)	PP_3087 ←	excinuclease ABC subunit A
RA	3,476,981	C→A	13.9%	A329S (GCG→TCG)	PP_3088 ←	hypothetical protein
RA	3,476,986	T→G	14.3%	E327A (GAA→GCA)	PP_3088 ←	hypothetical protein
RA	3,528,501	G→C	11.3%	R106R (CGG→CGC)	dnaEB →	error‑prone DNA polymerase
RA	3,528,504	G→C	11.4%	R107R (CGG→CGC)	dnaEB →	error‑prone DNA polymerase
RA	3,534,762	T→G	12.9%	intergenic (+49/‑106)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,767	A→C	13.9%	intergenic (+54/‑101)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,768	C→A	13.7%	intergenic (+55/‑100)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,771	T→G	14.0%	intergenic (+58/‑97)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,772	G→T	15.8%	intergenic (+59/‑96)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,777	C→A	13.7%	intergenic (+64/‑91)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,548,090	C→A	9.1%	A345A (GCC→GCA)	PP_3132 →	polysaccharide transporter
RA	3,550,431	G→T	9.8%	V94L (GTA→TTA)	PP_3134 →	hypothetical protein
RA	3,550,435	G→C	7.5%	R95P (CGT→CCT) ‡	PP_3134 →	hypothetical protein
RA	3,550,436	T→G	7.5%	R95R (CGT→CGG) ‡	PP_3134 →	hypothetical protein
RA	3,550,439	C→A	7.6%	I96I (ATC→ATA)	PP_3134 →	hypothetical protein
RA	3,550,440	G→C	7.5%	G97R (GGT→CGT)	PP_3134 →	hypothetical protein
RA	3,550,444	A→C	7.2%	N98T (AAC→ACC)	PP_3134 →	hypothetical protein
RA	3,571,676	G→C	11.1%	P235P (CCG→CCC)	yneJ →	LysR family DNA‑binding transcriptional regulator
RA	3,578,676	C→T	7.7%	S10S (AGC→AGT)	PP_5589 →	rhs repeat‑associated core domain‑containing protein
RA	3,580,849	T→A	15.2%	intergenic (+27/‑56)	benR → / → PP_3160	BenABC operon transcriptional activator/hypothetical protein
RA	3,580,850	T→A	15.2%	intergenic (+28/‑55)	benR → / → PP_3160	BenABC operon transcriptional activator/hypothetical protein
RA	3,591,576	T→A	10.3%	L258M (TTG→ATG) ‡	PP_3169 →	membrane protein
RA	3,591,577	T→A	12.4%	L258* (TTG→TAG) ‡	PP_3169 →	membrane protein
RA	3,593,267	T→A	9.7%	R101R (CGT→CGA)	PP_3171 →	hypothetical protein
RA	3,593,268	A→T	9.4%	I102F (ATC→TTC) ‡	PP_3171 →	hypothetical protein
RA	3,593,269	T→A	10.0%	I102N (ATC→AAC) ‡	PP_3171 →	hypothetical protein
RA	3,632,620	C→G	6.9%	P31R (CCC→CGC)	PP_3201 →	BNR domain‑containing protein
RA	3,632,623	C→G	7.3%	A32G (GCG→GGG)	PP_3201 →	BNR domain‑containing protein
RA	3,644,948	C→T	8.0%	intergenic (‑43/+23)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,644,951	A→G	8.1%	intergenic (‑46/+20)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,688,175	Δ1 bp	15.6%	coding (292/1107 nt)	PP_3253 →	carboxylate‑amine ligase
RA	3,688,180	G→T	16.1%	L99L (CTG→CTT)	PP_3253 →	carboxylate‑amine ligase
RA	3,688,187	A→C	14.7%	K102Q (AAG→CAG)	PP_3253 →	carboxylate‑amine ligase
RA	3,688,191:1	+A	16.1%	coding (308/1107 nt)	PP_3253 →	carboxylate‑amine ligase
RA	3,688,198	A→G	14.3%	A105A (GCA→GCG)	PP_3253 →	carboxylate‑amine ligase
RA	3,707,816	A→G	11.1%	V353A (GTG→GCG)	actP‑III ←	acetate permease
RA	3,734,055	G→A	9.1%	V18I (GTC→ATC)	PP_3301 →	RND transporter membrane fusion protein
RA	3,759,984	T→C	9.1%	L206P (CTG→CCG) ‡	folEB →	GTP cyclohydrolase I
RA	3,759,985	G→A	9.3%	L206L (CTG→CTA) ‡	folEB →	GTP cyclohydrolase I
RA	3,768,275	C→A	13.7%	P97Q (CCG→CAG)	PP_5600 →	hypothetical protein
RA	3,773,862	G→A	8.5%	A189T (GCC→ACC)	PP_5743 →	TonB‑dependent receptor protein
RA	3,835,756	T→C	10.2%	W82R (TGG→CGG) ‡	PP_3387 →	hypothetical protein
RA	3,835,757	G→A	10.2%	W82* (TGG→TAG) ‡	PP_3387 →	hypothetical protein
RA	3,835,761	A→C	9.9%	Q83H (CAA→CAC)	PP_3387 →	hypothetical protein
RA	3,839,252	G→A	9.1%	G59S (GGC→AGC)	PP_3389 →	membrane protein
RA	3,840,132	G→A	8.7%	R352H (CGC→CAC)	PP_3389 →	membrane protein
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,853,118	T→A	21.9%	I169N (ATT→AAT)	alkB →	alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase
RA	3,866,103	C→T	12.5%	A259T (GCT→ACT)	PP_3415 ←	LacI family transcriptional regulator
RA	3,867,946	T→C	11.1%	I71T (ATC→ACC)	gntT →	D‑gluconate transporter
RA	3,870,393	G→A	9.2%	L176L (CTG→TTG)	PP_3419 ←	sigma‑54 dependent transcriptional regulator/response regulator
RA	3,872,131	A→T	7.5%	L84M (TTG→ATG)	PP_3420 ←	sensor histidine kinase
RA	3,872,133	T→C	7.5%	Q83R (CAA→CGA)	PP_3420 ←	sensor histidine kinase
RA	3,872,136	G→A	7.5%	S82L (TCG→TTG)	PP_3420 ←	sensor histidine kinase
RA	3,872,138	A→T	7.5%	H81Q (CAT→CAA)	PP_3420 ←	sensor histidine kinase
RA	3,882,813	A→G	9.2%	intergenic (+56/‑169)	oprN → / → PP_3428	multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein
RA	3,914,433	G→C	8.1%	R118R (CGC→CGG)	PP_3454 ←	transcriptional regulator
RA	3,924,613	A→G	8.3%	D67D (GAT→GAC)	peaB ←	quinohemoprotein amine dehydrogenase modification protein
RA	3,932,044	C→A	7.5%	R478L (CGC→CTC)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,932,050	C→G	7.0%	G476A (GGC→GCC)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,936,285	C→G	9.3%	A24G (GCC→GGC)	PP_3469 →	hypothetical protein
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,974,681	C→T	10.8%	intergenic (‑209/‑132)	PP_3503 ← / → PP_3504	sigma‑54 dependent transcriptional regulator/hypothetical protein
RA	3,985,937	A→C	7.8%	K72Q (AAG→CAG) ‡	oplB →	5‑oxoprolinase B
RA	3,985,939	G→C	7.5%	K72N (AAG→AAC) ‡	oplB →	5‑oxoprolinase B
RA	3,985,941	G→T	7.7%	C73F (TGC→TTC)	oplB →	5‑oxoprolinase B
RA	3,996,897	G→T	8.0%	P89H (CCT→CAT)	PP_3525 ←	hypothetical protein
RA	3,996,900	A→C	8.0%	M88R (ATG→AGG)	PP_3525 ←	hypothetical protein
RA	4,022,306	G→C	14.3%	intergenic (‑1/+667)	PP_3547 ← / ← emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
RA	4,022,307	G→C	14.3%	intergenic (‑2/+666)	PP_3547 ← / ← emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
RA	4,022,806	C→G	11.8%	intergenic (‑501/+167)	PP_3547 ← / ← emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
RA	4,022,807	C→G	9.5%	intergenic (‑502/+166)	PP_3547 ← / ← emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
RA	4,033,298	G→T	10.9%	P312P (CCG→CCT)	PP_3555 →	transmembrane sensor
RA	4,049,907	A→G	23.8%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,910	C→G	21.4%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,913	C→T	17.9%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,053,483	C→T	12.5%	G19G (GGC→GGT)	PP_3573 →	monooxygenase
RA	4,062,900	C→G	6.3%	G480A (GGC→GCC)	PP_3581 ←	membrane protein
RA	4,087,484	G→A	13.3%	intergenic (+133/‑293)	PP_3597 → / → PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26
RA	4,087,485	C→G	13.3%	intergenic (+134/‑292)	PP_3597 → / → PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26
RA	4,087,488	C→G	13.3%	intergenic (+137/‑289)	PP_3597 → / → PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26
RA	4,087,489	T→C	13.3%	intergenic (+138/‑288)	PP_3597 → / → PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26
RA	4,091,449	A→C	6.2%	N20H (AAC→CAC)	garD →	galactarate dehydratase
RA	4,091,457	G→T	6.3%	V22V (GTG→GTT)	garD →	galactarate dehydratase
RA	4,117,249	T→A	9.8%	C132S (TGC→AGC)	iorA‑II →	isoquinoline 1‑oxidoreductase subunit alpha
RA	4,125,301	A→T	12.2%	intergenic (+30/+51)	PP_3628 → / ← PP_3629	choline/carnitine/betaine transporter family protein/hypothetical protein
RA	4,125,634	A→T	9.5%	G66G (GGT→GGA) ‡	PP_3629 ←	hypothetical protein
RA	4,125,636	C→A	9.5%	G66C (GGT→TGT) ‡	PP_3629 ←	hypothetical protein
RA	4,125,639	T→G	8.8%	N65H (AAT→CAT)	PP_3629 ←	hypothetical protein
RA	4,125,641	A→T	9.1%	L64H (CTC→CAC)	PP_3629 ←	hypothetical protein
RA	4,129,546	G→T	7.8%	A55S (GCC→TCC)	PP_3633 →	ArgC‑like N‑acetyl‑gamma‑glutamyl‑phosphate reductase
RA	4,160,661	G→C	10.8%	intergenic (+27/+94)	PP_3662 → / ← PP_3663	hypothetical protein/GGDEF domain‑containing protein
RA	4,160,662	G→C	10.8%	intergenic (+28/+93)	PP_3662 → / ← PP_3663	hypothetical protein/GGDEF domain‑containing protein
RA	4,191,401	C→T	11.4%	intergenic (‑733/‑424)	PP_5612 ← / → PP_5613	hypothetical protein/hypothetical protein
RA	4,201,086	A→C	6.4%	intergenic (‑49/+66)	PP_3690 ← / ← PP_3691	hypothetical protein/DNA helicase‑related protein
RA	4,227,582	C→T	10.2%	A88T (GCA→ACA)	PP_3706 ←	hypothetical protein
RA	4,258,198	G→A	10.5%	S47L (TCG→TTG)	PP_3731 ←	TetR family transcriptional regulator
RA	4,271,464:1	+C	7.0%	coding (1604/1896 nt)	mrdA‑I →	transpeptidase
RA	4,271,465	A→T	7.0%	R535R (CGA→CGT)	mrdA‑I →	transpeptidase
RA	4,271,466	A→T	7.0%	I536F (ATT→TTT)	mrdA‑I →	transpeptidase
RA	4,271,813	G→A	11.1%	R205C (CGC→TGC)	PP_3742 ←	glutathione S‑transferase family protein
RA	4,287,468	C→G	6.1%	G90R (GGC→CGC)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,293,967	C→G	13.0%	D13H (GAC→CAC)	PP_3763 ←	precorrin‑6A synthase
RA	4,305,604	G→A	5.8%	R151C (CGC→TGC)	PP_3777 ←	hypothetical protein
RA	4,305,607	G→A	5.9%	Q150* (CAG→TAG)	PP_3777 ←	hypothetical protein
RA	4,305,608	T→C	5.8%	L149L (CTA→CTG)	PP_3777 ←	hypothetical protein
RA	4,305,611	T→C	6.2%	A148A (GCA→GCG)	PP_3777 ←	hypothetical protein
RA	4,330,602	T→A	9.7%	D16E (GAT→GAA)	PP_3802 →	cation ABC transporter ATP‑binding protein
RA	4,348,705	A→G	38.4%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,413,705	G→A	11.6%	D126N (GAC→AAC)	PP_5643 →	hypothetical protein
RA	4,446,491	G→C	10.3%	Y358* (TAC→TAG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,463,953	A→T	8.3%	*139C (TGA→TGT)	PP_3956 →	hypothetical protein
RA	4,463,956	G→C	8.7%	intergenic (+3/+25)	PP_3956 → / ← betT‑III	hypothetical protein/choline/carnitine/betaine transporter BetTC
RA	4,463,959	A→T	8.3%	intergenic (+6/+22)	PP_3956 → / ← betT‑III	hypothetical protein/choline/carnitine/betaine transporter BetTC
RA	4,466,791	C→T	8.9%	D178D (GAC→GAT)	nhaA‑II →	Na(+)/H(+) antiporter NhaA
RA	4,467,800	A→T	9.3%	S15S (TCA→TCT)	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,467,804	T→C	9.1%	W17R (TGG→CGG) ‡	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,467,805	G→A	9.3%	W17* (TGG→TAG) ‡	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,467,809	A→T	10.0%	R18R (CGA→CGT)	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,467,813	T→C	9.7%	W20R (TGG→CGG)	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,474,259	A→G	7.2%	L426P (CTG→CCG)	PP_3964 ←	transposase
RA	4,474,268	G→T	11.7%	T423K (ACG→AAG) ‡	PP_3964 ←	transposase
RA	4,474,269	T→G	12.0%	T423P (ACG→CCG) ‡	PP_3964 ←	transposase
RA	4,474,270	C→A	11.4%	L422L (CTG→CTT) ‡	PP_3964 ←	transposase
RA	4,474,271	A→C	12.0%	L422R (CTG→CGG) ‡	PP_3964 ←	transposase
RA	4,477,814	G→C	6.8%	Q60E (CAG→GAG)	PP_3968 ←	sensor histidine kinase
RA	4,477,817	G→C	6.9%	H59D (CAT→GAT)	PP_3968 ←	sensor histidine kinase
RA	4,484,724	A→T	8.7%	intergenic (+368/‑101)	PP_3976 → / → PP_3977	isochorismatase family hydrolase/hypothetical protein
RA	4,484,727	A→T	8.7%	intergenic (+371/‑98)	PP_3976 → / → PP_3977	isochorismatase family hydrolase/hypothetical protein
RA	4,489,097	G→A	9.1%	intergenic (+450/+121)	PP_3981 → / ← PP_3982	transposase/hypothetical protein
RA	4,503,584	A→G	7.7%	I405V (ATT→GTT)	xanP →	xanthine permease
RA	4,520,454	A→T	12.5%	intergenic (+45/+27)	cspD → / ← icd	DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase
RA	4,522,239	T→G	13.5%	F30V (TTC→GTC) ‡	idh →	isocitrate dehydrogenase
RA	4,522,241	C→G	12.7%	F30L (TTC→TTG) ‡	idh →	isocitrate dehydrogenase
RA	4,522,243	C→A	13.7%	T31N (ACC→AAC)	idh →	isocitrate dehydrogenase
RA	4,544,949	A→C	13.6%	I286S (ATC→AGC)	hyuC ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	4,544,952	A→G	13.9%	V285A (GTG→GCG)	hyuC ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	4,544,956	T→A	15.6%	N284Y (AAC→TAC)	hyuC ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	4,544,960	C→T	16.3%	S282S (TCG→TCA)	hyuC ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	4,544,963	G→T	15.9%	G281G (GGC→GGA)	hyuC ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	4,549,179	A→G	9.8%	intergenic (+51/‑85)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,549,180:1	+C	10.2%	intergenic (+52/‑84)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,549,183	C→T	10.2%	intergenic (+55/‑81)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,549,188	A→G	10.2%	intergenic (+60/‑76)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,549,191	Δ1 bp	10.0%	intergenic (+63/‑73)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,549,193	C→T	10.0%	intergenic (+65/‑71)	pydB → / → pydX	bifunctional D‑hydantoinase/dihydropyrimidinase/NADP‑dependent dihydropyrimidine dehydrogenase subunit
RA	4,551,531	C→T	7.8%	G300G (GGC→GGT)	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,557,029	T→G	15.7%	K150Q (AAG→CAG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,034	A→C	18.7%	L148R (CTG→CGG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,037	G→T	19.4%	P147Q (CCG→CAG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,042	C→A	19.5%	L145L (CTG→CTT)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	100%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,587,695	G→T	7.9%	R40R (CGC→CGA) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,697	G→C	7.8%	R40G (CGC→GGC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,698	G→C	7.8%	S39S (TCC→TCG) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,700	A→C	8.0%	S39A (TCC→GCC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,599,290	G→C	10.2%	L173L (CTC→CTG)	PP_4071 ←	membrane protein
RA	4,669,794	C→T	7.2%	T42T (ACC→ACT)	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,688,071	C→G	19.5%	R349R (CGC→CGG)	PP_4148 →	ABC transporter permease
RA	4,705,413	T→A	20.7%	intergenic (‑151/+26)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,414	T→A	23.9%	intergenic (‑152/+25)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,725,040	G→A	11.6%	intergenic (+25/+43)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,725,041	A→T	11.3%	intergenic (+26/+42)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,725,042	T→C	11.5%	intergenic (+27/+41)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,738,564	A→G	7.7%	F60L (TTC→CTC)	sdhD ←	succinate dehydrogenase hydrophobic membrane anchor subunit
RA	4,740,795	T→G	10.9%	intergenic (+32/+721)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,796	C→A	9.0%	intergenic (+33/+720)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,783,688	A→G	7.3%	L1209P (CTG→CCG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,691	C→T	7.4%	R1208Q (CGG→CAG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,787,291	C→T	7.8%	R8H (CGC→CAC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,792,975	C→T	6.7%	A289T (GCC→ACC)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,796,581	T→C	11.7%	intergenic (‑139/+79)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,604	A→G	17.5%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,612	C→T	22.6%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,614	G→C	21.5%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,617	G→C	22.2%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	21.6%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	19.9%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,807,246	T→C	7.3%	K216E (AAG→GAG)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,807,250	G→C	8.7%	S214R (AGC→AGG)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,807,254	G→A	11.3%	S213F (TCC→TTC)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,819,491	G→A	7.8%	A3900V (GCC→GTC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,826,272	C→G	9.8%	V1640L (GTG→CTG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,826,277:1	+G	9.8%	coding (4913/12954 nt)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,826,282	G→T	9.2%	I1636I (ATC→ATA) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,826,283	A→C	8.7%	I1636S (ATC→AGC) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,826,287	Δ1 bp	9.6%	coding (4903/12954 nt)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,826,294	C→G	10.2%	Q1632H (CAG→CAC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,843,875	G→C	8.4%	L241L (CTG→CTC)	PP_4259 →	iron‑sulfur cluster‑binding protein
RA	4,852,589	A→G	7.8%	intergenic (‑260/+37)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,852,594	T→C	7.8%	intergenic (‑265/+32)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,852,595	G→A	7.8%	intergenic (‑266/+31)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,874,348	A→T	7.3%	I62N (ATC→AAC)	PP_4283 ←	GntR family transcriptional regulator
RA	4,881,464	G→A	8.9%	V183I (GTA→ATA)	uacT →	uric acid permease
RA	4,895,712	T→A	10.4%	L56Q (CTG→CAG)	PP_4304 →	VIC family cation transporter
RA	4,895,715	T→A	10.4%	L57Q (CTG→CAG)	PP_4304 →	VIC family cation transporter
RA	4,900,051	G→A	9.1%	intergenic (+12/‑486)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,065	A→G	15.2%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,069	G→A	15.9%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,070	T→C	15.5%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,074	C→T	16.3%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,915,752	A→T	12.1%	V112V (GTT→GTA)	ccmC ←	protoheme IX reservoir complex subunit
RA	4,915,756	A→G	12.5%	L111P (CTG→CCG)	ccmC ←	protoheme IX reservoir complex subunit
RA	4,917,689	A→G	10.6%	I30V (ATC→GTC) ‡	PP_4328 →	hypothetical protein
RA	4,917,690	T→A	10.0%	I30N (ATC→AAC) ‡	PP_4328 →	hypothetical protein
RA	4,917,691	C→T	11.3%	I30I (ATC→ATT) ‡	PP_4328 →	hypothetical protein
RA	4,918,174	C→G	7.7%	L191L (CTC→CTG)	PP_4328 →	hypothetical protein
RA	4,949,944	C→G	6.9%	D134H (GAT→CAT)	fliM ←	flagellar biosynthesis switching/energizing protein
RA	4,950,972	T→G	11.1%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,950,973	C→A	17.3%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,963,027	G→C	6.9%	L210V (CTG→GTG)	fleS ←	two‑component system sensor histidine kinase FleS
RA	4,963,028	G→C	6.9%	H209Q (CAC→CAG)	fleS ←	two‑component system sensor histidine kinase FleS
RA	4,963,035	G→A	7.5%	A207V (GCC→GTC)	fleS ←	two‑component system sensor histidine kinase FleS
RA	4,965,196	G→T	54.5%	C54* (TGC→TGA)	fleQ ←	transcriptional regulator FleQ
RA	4,966,615	T→G	9.3%	A354A (GCA→GCC)	fliD ←	flagellar filament capping protein
RA	4,969,993	T→G	15.9%	T84P (ACT→CCT)	fliC ←	flagellin
RA	4,970,004	C→A	12.2%	G80V (GGC→GTC)	fliC ←	flagellin
RA	4,978,320	T→C	10.0%	K94E (AAG→GAG)	flgH ←	flagellar L‑ring protein
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	5,022,462	G→A	10.8%	V183V (GTC→GTT)	PP_4427 ←	amino acid ABC transporter permease
RA	5,029,418	G→A	9.1%	L19L (TTG→TTA)	PP_4433 →	amino acid MFS transporter
RA	5,047,262	C→A	8.8%	intergenic (+243/+205)	PP_5683 → / ← PP_5684	hypothetical protein/hypothetical protein
RA	5,047,265	T→A	8.8%	intergenic (+246/+202)	PP_5683 → / ← PP_5684	hypothetical protein/hypothetical protein
RA	5,047,268	T→G	8.3%	intergenic (+249/+199)	PP_5683 → / ← PP_5684	hypothetical protein/hypothetical protein
RA	5,078,877	G→C	13.2%	intergenic (‑122/+275)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,090,047	A→G	8.1%	L297P (CTG→CCG)	astA‑II ←	arginine N‑succinyltransferase subunit alpha
RA	5,090,049	G→C	7.9%	G296G (GGC→GGG) ‡	astA‑II ←	arginine N‑succinyltransferase subunit alpha
RA	5,090,051	C→T	8.7%	G296S (GGC→AGC) ‡	astA‑II ←	arginine N‑succinyltransferase subunit alpha
RA	5,105,065	A→T	8.2%	intergenic (+88/+26)	yhhS → / ← ydiJ	carbohydrate efflux transporter/putative oxidoreductase
RA	5,105,066	A→T	8.2%	intergenic (+89/+25)	yhhS → / ← ydiJ	carbohydrate efflux transporter/putative oxidoreductase
RA	5,105,067	A→T	8.8%	intergenic (+90/+24)	yhhS → / ← ydiJ	carbohydrate efflux transporter/putative oxidoreductase
RA	5,125,096	A→T	13.8%	intergenic (+70/‑112)	PP_4511 → / → PP_4512	AraC family transcriptional regulator/DMT superfamily permease
RA	5,135,883	G→C	6.5%	D229E (GAC→GAG)	PP_4521 ←	aerotaxis receptor
RA	5,135,888	G→C	6.6%	L228V (CTC→GTC)	PP_4521 ←	aerotaxis receptor
RA	5,137,665	A→G	11.6%	intergenic (‑64/‑149)	PP_4522 ← / → PP_4523	LysR family transcriptional regulator/agmatinase
RA	5,137,670	C→T	11.9%	intergenic (‑69/‑144)	PP_4522 ← / → PP_4523	LysR family transcriptional regulator/agmatinase
RA	5,168,312	C→A	7.9%	intergenic (‑433/‑71)	hrpA ← / → PP_4547	ATP‑dependent helicase HrpA/glutamine synthetase
RA	5,168,313	G→C	7.8%	intergenic (‑434/‑70)	hrpA ← / → PP_4547	ATP‑dependent helicase HrpA/glutamine synthetase
RA	5,177,302	C→T	7.2%	G228D (GGC→GAC)	PP_4553 ←	ECF family RNA polymerase sigma‑70 factor
RA	5,181,782	C→T	7.8%	G54D (GGT→GAT)	PP_4560 ←	ribonuclease BN
RA	5,182,087	C→T	9.3%	intergenic (‑145/+9)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,854	G→T	5.3%	G115V (GGC→GTC)	PP_4562 →	hypothetical protein
RA	5,182,857	A→C	5.2%	E116A (GAG→GCG)	PP_4562 →	hypothetical protein
RA	5,187,979	T→G	8.9%	L162V (TTG→GTG) ‡	PP_4567 →	hypothetical protein
RA	5,187,980	T→C	8.9%	L162S (TTG→TCG) ‡	PP_4567 →	hypothetical protein
RA	5,187,983	G→A	9.1%	R163H (CGC→CAC)	PP_4567 →	hypothetical protein
RA	5,187,991	A→T	9.1%	I166F (ATC→TTC)	PP_4567 →	hypothetical protein
JC	5,201,568	Δ98 bp	15.1%	intergenic (‑54/‑29)	PP_4582 ← / → PP_4583	membrane protein/putative Peptidase
RA	5,212,487	A→G	10.2%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,488	C→A	10.0%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,491	T→G	9.6%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,492	C→T	9.6%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,221,923	Δ1 bp	6.9%	coding (667/840 nt)	PP_4602 ←	AraC family transcriptional regulator
RA	5,222,188	C→A	8.7%	E134D (GAG→GAT) ‡	PP_4602 ←	AraC family transcriptional regulator
RA	5,222,189	T→G	8.7%	E134A (GAG→GCG) ‡	PP_4602 ←	AraC family transcriptional regulator
RA	5,229,191	Δ1 bp	6.1%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,195	C→G	6.2%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,198	C→G	6.2%	intergenic (‑140/+36)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,201:1	+C	6.3%	intergenic (‑143/+33)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,239,884	G→A	10.7%	A144V (GCG→GTG)	ldh ←	leucine dehydrogenase
RA	5,239,889	T→C	11.2%	P142P (CCA→CCG)	ldh ←	leucine dehydrogenase
RA	5,245,073	G→A	8.0%	E160E (GAG→GAA)	hmgR →	Hmg transcriptional repressor
RA	5,250,438	G→A	6.4%	R83W (CGG→TGG)	cidB ←	holin CidA anti‑holin regulator
RA	5,259,675	G→A	8.1%	A73T (GCT→ACT)	yqeF →	acetyl‑CoA acetyltransferase
RA	5,269,313	G→C	8.2%	L342L (CTC→CTG) ‡	radA ←	DNA repair enzyme
RA	5,269,314	A→T	8.3%	L342H (CTC→CAC) ‡	radA ←	DNA repair enzyme
RA	5,269,315	G→C	8.3%	L342V (CTC→GTC) ‡	radA ←	DNA repair enzyme
RA	5,276,840	G→A	5.7%	intergenic (‑144/‑200)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,276,843	T→C	5.9%	intergenic (‑147/‑197)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,276,845	A→T	5.9%	intergenic (‑149/‑195)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,276,846	C→T	6.2%	intergenic (‑150/‑194)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,307,341	C→G	10.5%	intergenic (‑90/+96)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,307,343	G→A	10.5%	intergenic (‑92/+94)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,307,344	T→C	10.7%	intergenic (‑93/+93)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,307,346	C→G	11.1%	intergenic (‑95/+91)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,313,276	C→G	9.6%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,313,279	C→G	9.6%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,318,982	A→G	6.6%	M131T (ATG→ACG)	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,318,990	G→C	6.9%	H128Q (CAC→CAG)	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,318,998	C→T	7.0%	V126M (GTG→ATG)	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,329,396	T→A	8.4%	L10Q (CTG→CAG)	PP_4690 →	Rieske 2Fe‑2S family protein
RA	5,332,245	C→G	11.1%	intergenic (+28/‑21)	dksA → / → gluQ	RNA polymerase‑binding transcription factor DksA/glutamyl‑Q tRNA(Asp) synthetase
RA	5,337,381	T→C	8.5%	G277G (GGT→GGC)	PP_4696 →	nitrogen regulation protein NR(I)
RA	5,342,570	T→A	6.5%	intergenic (+16/‑191)	panC → / → pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
RA	5,342,571	T→G	6.4%	intergenic (+17/‑190)	panC → / → pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
RA	5,342,597	T→C	8.2%	intergenic (+43/‑164)	panC → / → pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
RA	5,342,601	G→A	11.1%	intergenic (+47/‑160)	panC → / → pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
RA	5,342,604	C→G	10.5%	intergenic (+50/‑157)	panC → / → pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
RA	5,342,607	T→A	10.3%	intergenic (+53/‑154)	panC → / → pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
RA	5,342,608	T→A	10.3%	intergenic (+54/‑153)	panC → / → pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
RA	5,342,611	C→G	10.4%	intergenic (+57/‑150)	panC → / → pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
RA	5,342,614	T→C	10.6%	intergenic (+60/‑147)	panC → / → pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
RA	5,344,461:1	+C	9.3%	intergenic (+36/‑142)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,461:2	+T	9.3%	intergenic (+36/‑142)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,467	C→G	9.3%	intergenic (+42/‑136)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,471	C→T	9.7%	intergenic (+46/‑132)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,480	A→G	11.3%	intergenic (+55/‑123)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,346,334	C→A	7.7%	L578M (CTG→ATG) ‡	acsA‑II →	acetyl‑CoA synthetase
RA	5,346,335	T→G	7.8%	L578R (CTG→CGG) ‡	acsA‑II →	acetyl‑CoA synthetase
RA	5,346,338	T→C	7.8%	V579A (GTC→GCC)	acsA‑II →	acetyl‑CoA synthetase
RA	5,353,366	A→G	7.4%	F251L (TTC→CTC)	pnp ←	polyribonucleotide nucleotidyltransferase
RA	5,353,367	C→T	7.4%	E250E (GAG→GAA)	pnp ←	polyribonucleotide nucleotidyltransferase
RA	5,368,670	G→T	6.3%	R14S (CGC→AGC)	greA ←	transcription elongation factor GreA
RA	5,371,827	C→T	7.0%	C37Y (TGT→TAT)	carB ←	carbamoyl‑phosphate synthase large subunit
RA	5,372,333	G→C	7.0%	S279S (TCC→TCG) ‡	carA ←	carbamoyl‑phosphate synthase small subunit
RA	5,372,335	A→G	7.1%	S279P (TCC→CCC) ‡	carA ←	carbamoyl‑phosphate synthase small subunit
RA	5,376,390	A→T	9.6%	L392Q (CTG→CAG)	dnaK ←	chaperone protein DnaK
RA	5,376,393	A→T	11.2%	L391Q (CTG→CAG)	dnaK ←	chaperone protein DnaK
RA	5,376,396	A→T	9.6%	L390Q (CTG→CAG)	dnaK ←	chaperone protein DnaK
RA	5,381,267	T→C	9.7%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,268	T→A	9.5%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,269	G→A	9.8%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,384,527	G→C	10.4%	G331R (GGC→CGC) ‡	lldP →	L‑lactate permease
RA	5,384,528	G→C	10.4%	G331A (GGC→GCC) ‡	lldP →	L‑lactate permease
RA	5,387,364	C→T	8.5%	Q292* (CAG→TAG)	dld2 →	D‑lactate dehydrogenase
RA	5,390,431	T→G	9.2%	intergenic (+520/‑202)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,390,432	C→A	9.2%	intergenic (+521/‑201)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,393,123	A→G	7.0%	H22R (CAC→CGC) ‡	hsdR →	type I restriction modification system endonuclease
RA	5,393,124	C→T	6.9%	H22H (CAC→CAT) ‡	hsdR →	type I restriction modification system endonuclease
RA	5,400,166	C→G	6.6%	L327V (CTT→GTT) ‡	PP_4743 →	hypothetical protein
RA	5,400,167	T→G	6.9%	L327R (CTT→CGT) ‡	PP_4743 →	hypothetical protein
RA	5,406,053	C→G	7.4%	A185A (GCG→GCC)	PP_4750 ←	amino acid ABC transporter permease
RA	5,406,056	C→G	8.3%	A184A (GCG→GCC)	PP_4750 ←	amino acid ABC transporter permease
RA	5,422,880	G→T	7.0%	L176M (CTG→ATG)	PP_4763 ←	acetyltransferase
RA	5,430,392	A→G	9.7%	intergenic (‑74/+87)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,396	A→G	9.7%	intergenic (‑78/+83)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,397:1	+A	10.9%	intergenic (‑79/+82)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,404	Δ1 bp	10.2%	intergenic (‑86/+75)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,406	C→T	10.4%	intergenic (‑88/+73)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,410	C→T	12.6%	intergenic (‑92/+69)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,426	C→T	9.6%	intergenic (‑108/+53)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,438,757	T→C	8.9%	Q200R (CAG→CGG)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	5,485,150	A→G	13.5%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,153	A→G	16.4%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,154	T→C	17.6%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,159	G→A	18.5%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,162	T→C	20.5%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,167	G→A	14.7%	intergenic (+73/‑74)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,168	C→T	14.7%	intergenic (+74/‑73)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,171	C→T	14.7%	intergenic (+77/‑70)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,507,604	G→C	14.3%	A289P (GCG→CCG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,507,607	G→C	14.3%	A290P (GCG→CCG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,509,454	G→C	5.5%	G353G (GGG→GGC)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,509,458	A→T	5.5%	S355C (AGC→TGC)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,518,734	T→A	16.8%	K59N (AAA→AAT) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,735	T→A	18.2%	K59I (AAA→ATA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,736	T→A	16.6%	K59* (AAA→TAA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,539,664	C→T	8.3%	G441D (GGC→GAC)	PP_4872 ←	hypothetical protein
RA	5,547,156	A→G	6.4%	L633P (CTC→CCC)	rnr ←	exoribonuclease R
RA	5,552,913	T→G	12.9%	intergenic (+576/+85)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,552,914	T→A	12.7%	intergenic (+577/+84)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,552,915	C→A	15.0%	intergenic (+578/+83)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,562,937	A→C	7.0%	intergenic (‑53/+8)	hflK ← / ← hflX	integral membrane ATP‑dependent zinc metallopeptidase/GTPase HflX
RA	5,565,749	G→A	12.9%	H579H (CAC→CAT)	mutL ←	DNA mismatch repair protein MutL
RA	5,565,754	A→T	11.7%	C578S (TGC→AGC)	mutL ←	DNA mismatch repair protein MutL
RA	5,565,755	A→T	11.7%	A577A (GCT→GCA)	mutL ←	DNA mismatch repair protein MutL
RA	5,565,760	T→C	11.6%	M576V (ATG→GTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,413	T→A	6.2%	Q358L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,416	T→A	6.2%	Q357L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,570,177	T→G	9.5%	A24A (GCA→GCC) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,570,178	G→C	9.5%	A24G (GCA→GGA) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,570,179	C→A	9.7%	A24S (GCA→TCA) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,597,888	G→A	11.6%	P463P (CCG→CCA)	PP_4923 →	outer membrane efflux protein
RA	5,597,890	A→G	11.1%	D464G (GAC→GGC) ‡	PP_4923 →	outer membrane efflux protein
RA	5,597,891	C→T	11.3%	D464D (GAC→GAT) ‡	PP_4923 →	outer membrane efflux protein
RA	5,597,893	T→C	11.1%	L465P (CTG→CCG)	PP_4923 →	outer membrane efflux protein
RA	5,611,354	C→A	5.3%	F116L (TTC→TTA)	PP_4931 →	hypothetical protein
RA	5,615,623	A→G	9.6%	intergenic (‑102/+29)	hldE ← / ← msbA	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase/lipid A export ATP‑binding/permease MsbA
RA	5,615,628	A→G	9.8%	intergenic (‑107/+24)	hldE ← / ← msbA	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase/lipid A export ATP‑binding/permease MsbA
RA	5,615,630	G→C	9.8%	intergenic (‑109/+22)	hldE ← / ← msbA	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase/lipid A export ATP‑binding/permease MsbA
RA	5,615,632	C→T	10.0%	intergenic (‑111/+20)	hldE ← / ← msbA	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase/lipid A export ATP‑binding/permease MsbA
RA	5,615,637	C→T	10.2%	intergenic (‑116/+15)	hldE ← / ← msbA	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase/lipid A export ATP‑binding/permease MsbA
RA	5,628,555	T→G	10.0%	intergenic (‑25/+82)	rlmJ ← / ← putP	23S rRNA (adenine(2030)‑N(6))‑methyltransferase/sodium/L‑proline transporter
RA	5,628,557	T→A	8.2%	intergenic (‑27/+80)	rlmJ ← / ← putP	23S rRNA (adenine(2030)‑N(6))‑methyltransferase/sodium/L‑proline transporter
RA	5,651,374	T→G	10.6%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,377	C→A	10.4%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,660,182	G→T	5.7%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,660,185	A→C	5.9%	intergenic (+38/‑191)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,669,964	C→G	6.9%	H147Q (CAC→CAG)	metF →	5,10‑methylenetetrahydrofolate reductase
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,679,138	A→G	11.0%	D255G (GAC→GGC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,142	G→T	9.8%	E256D (GAG→GAT)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,143	A→C	9.8%	I257L (ATC→CTC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,147	C→T	9.5%	A258V (GCC→GTC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
JC	5,681,415	+CGGG	100%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,697,314	C→A	7.3%	intergenic (+24/‑53)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,697,316	G→C	7.3%	intergenic (+26/‑51)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,697,318	T→G	7.6%	intergenic (+28/‑49)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,705,336	A→T	8.0%	S13T (TCC→ACC)	PP_5007 ←	polyhydroxyalkanoate granule‑associated protein GA2
RA	5,705,405	T→A	6.5%	E133V (GAG→GTG)	PP_5008 ←	poly granule‑associated protein
RA	5,725,646	T→G	9.5%	K440N (AAA→AAC)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,725,652	C→G	10.0%	P438P (CCG→CCC)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,725,658	C→A	10.2%	P436P (CCG→CCT)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,740,467	T→G	14.5%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,743,360	C→T	11.8%	intergenic (‑193/+54)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,362	T→C	9.7%	intergenic (‑195/+52)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,363	G→A	10.2%	intergenic (‑196/+51)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,365	A→G	9.9%	intergenic (‑198/+49)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,373	A→C	10.3%	intergenic (‑206/+41)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,847	A→C	7.4%	L673R (CTC→CGC)	glgP ←	glycogen phosphorylase
RA	5,753,485	T→G	11.5%	intergenic (+46/‑320)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,753,486	C→A	12.9%	intergenic (+47/‑319)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,765,710	C→A	8.3%	S122R (AGC→AGA)	PP_5059 →	hypothetical protein
RA	5,769,864:1	+A	7.0%	coding (1008/4716 nt)	PP_5060 ←	hypothetical protein
RA	5,769,871	Δ1 bp	6.9%	coding (1001/4716 nt)	PP_5060 ←	hypothetical protein
RA	5,790,143	A→T	10.3%	intergenic (+22/+46)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,150	A→G	11.1%	intergenic (+29/+39)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,151	C→G	10.9%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,152	C→T	10.8%	intergenic (+31/+37)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,794,207	G→A	7.4%	G1231G (GGC→GGT)	gltB ←	L‑glutamate synthase subunit alpha
RA	5,807,984	A→G	20.0%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,985	T→C	19.7%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,986	G→A	19.7%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,987	C→T	20.3%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,808,007	T→G	10.9%	intergenic (+142/+13)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,808,008	C→G	10.4%	intergenic (+143/+12)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,816,531	C→G	7.7%	A114G (GCC→GGC)	PP_5092 →	NLP/P60 protein
RA	5,821,897	T→A	6.4%	L173Q (CTG→CAG)	metW →	methionine biosynthesis protein MetW
RA	5,824,139	G→T	7.5%	A359S (GCC→TCC)	yggW →	coproporphyrinogen/heterocyclic compound oxidase
RA	5,824,712	T→G	8.5%	intergenic (+136/+38)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,713	T→A	8.5%	intergenic (+137/+37)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,714	T→A	8.5%	intergenic (+138/+36)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,715	C→A	8.6%	intergenic (+139/+35)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,830,803	G→A	6.4%	G447G (GGC→GGT)	ftsY ←	signal recognition particle protein translocation receptor GTPase
RA	5,841,898	C→G	10.9%	T156R (ACG→AGG)	calB →	coniferyl aldehyde dehydrogenase
RA	5,841,904	C→T	10.8%	A158V (GCG→GTG) ‡	calB →	coniferyl aldehyde dehydrogenase
RA	5,841,905	G→C	10.6%	A158A (GCG→GCC) ‡	calB →	coniferyl aldehyde dehydrogenase
RA	5,841,906	A→G	11.1%	T159A (ACG→GCG)	calB →	coniferyl aldehyde dehydrogenase
RA	5,841,912	C→G	11.4%	L161V (CTG→GTG)	calB →	coniferyl aldehyde dehydrogenase
RA	5,845,595:1	+A	13.0%	intergenic (+20/‑82)	coaD → / → yfhL	phosphopantetheine adenylyltransferase/4Fe‑4S cluster‑containing protein
RA	5,845,602	Δ1 bp	12.0%	intergenic (+27/‑75)	coaD → / → yfhL	phosphopantetheine adenylyltransferase/4Fe‑4S cluster‑containing protein
RA	5,847,988	C→T	8.1%	L54L (CTG→TTG)	rlmI →	ribosomal RNA large subunit methyltransferase I
RA	5,849,047	C→G	5.8%	intergenic (+22/‑249)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,849,048	A→G	5.8%	intergenic (+23/‑248)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,855,020	C→T	6.9%	A347V (GCC→GTC)	tcyP →	sodium/cystine symporter
RA	5,859,607	C→T	9.3%	A127T (GCC→ACC)	PP_5135 ←	ABC transporter substrate‑binding protein
RA	5,866,696	G→T	12.3%	intergenic (+19/+38)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,866,697	A→C	12.0%	intergenic (+20/+37)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,869,612	T→C	7.1%	P40P (CCT→CCC)	PP_5144 →	hypothetical protein
RA	5,869,613	G→C	7.3%	G41R (GGG→CGG) ‡	PP_5144 →	hypothetical protein
RA	5,869,614	G→A	7.2%	G41E (GGG→GAG) ‡	PP_5144 →	hypothetical protein
RA	5,871,629	G→C	7.3%	L342V (CTC→GTC)	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,873,999	A→G	8.3%	intergenic (+47/+84)	PP_5147 → / ← PP_5148	haloacid dehalogenase‑like family hydrolase/membrane protein
RA	5,884,980	T→G	7.2%	A53A (GCA→GCC) ‡	PP_5159 ←	hypothetical protein
RA	5,884,981	G→C	7.4%	A53G (GCA→GGA) ‡	PP_5159 ←	hypothetical protein
RA	5,884,982	C→A	6.0%	A53S (GCA→TCA) ‡	PP_5159 ←	hypothetical protein
RA	5,887,056	T→G	7.4%	intergenic (‑41/‑89)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,887,060	G→C	7.4%	intergenic (‑45/‑85)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,887,077	A→G	6.8%	intergenic (‑62/‑68)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,900,949	C→G	8.6%	V335L (GTC→CTC)	PP_5174 ←	RND family transporter membrane fusion protein
RA	5,900,951	A→G	8.7%	V334A (GTG→GCG)	PP_5174 ←	RND family transporter membrane fusion protein
RA	5,900,954	C→T	8.9%	R333H (CGC→CAC)	PP_5174 ←	RND family transporter membrane fusion protein
RA	5,900,956	C→G	9.7%	E332D (GAG→GAC)	PP_5174 ←	RND family transporter membrane fusion protein
RA	5,903,164	G→T	28.7%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,165	A→C	32.3%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,919,685	C→G	9.0%	P91A (CCC→GCC) ‡	PP_5190 →	type II secretion system protein
RA	5,919,686	C→G	8.6%	P91R (CCC→CGC) ‡	PP_5190 →	type II secretion system protein
RA	5,919,687	C→G	7.5%	P91P (CCC→CCG) ‡	PP_5190 →	type II secretion system protein
RA	5,925,392	G→A	9.7%	G251G (GGC→GGT)	gcvT‑II ←	aminomethyltransferase
RA	5,925,395	C→T	9.7%	L250L (CTG→CTA) ‡	gcvT‑II ←	aminomethyltransferase
RA	5,925,396	A→G	9.5%	L250P (CTG→CCG) ‡	gcvT‑II ←	aminomethyltransferase
RA	5,925,399	T→C	9.7%	N249S (AAC→AGC)	gcvT‑II ←	aminomethyltransferase
RA	5,929,247	C→T	7.0%	E381K (GAG→AAG)	visC ←	ubiquinone biosynthesis oxidoreductase
RA	5,939,634	G→A	11.6%	G732D (GGC→GAC)	rbbA →	ribosome‑associated ATPase
RA	5,941,091	G→A	8.7%	P310P (CCG→CCA)	yhhJ →	translation‑like protein
RA	5,944,185	G→A	8.5%	A17V (GCC→GTC)	PP_5211 ←	ChaC‑related protein
RA	5,945,296	G→A	7.1%	L83F (CTT→TTT)	PP_5212 ←	iron‑sulfur‑binding oxidoreductase
RA	5,949,878	A→G	9.3%	M199V (ATG→GTG)	ppx →	exopolyphosphatase
RA	5,963,846	T→G	10.3%	Y216D (TAT→GAT)	PP_5229 →	hypothetical protein
RA	5,963,851	C→A	10.0%	I217I (ATC→ATA)	PP_5229 →	hypothetical protein
RA	5,980,387	C→G	6.4%	A344A (GCC→GCG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,984,436	T→C	10.0%	intergenic (+32/+57)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,442	G→A	9.7%	intergenic (+38/+51)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,449	T→C	10.3%	intergenic (+45/+44)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,988,809	G→A	26.8%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	27.3%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	25.4%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	25.5%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	24.4%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	24.1%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	25.9%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	26.3%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	26.3%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	22.7%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	22.2%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	21.8%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	33.7%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	35.4%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	33.3%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	29.6%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	25.6%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,992,832	C→T	5.5%	Q275* (CAG→TAG)	opdB →	proline‑specific outer membrane porin D
RA	6,003,644	C→A	9.4%	G98V (GGC→GTC) ‡	amaB ←	L‑piperidine‑6‑carboxylate dehydrogenase
RA	6,003,645	C→A	9.4%	G98C (GGC→TGC) ‡	amaB ←	L‑piperidine‑6‑carboxylate dehydrogenase
RA	6,003,646	T→G	9.4%	E97D (GAA→GAC) ‡	amaB ←	L‑piperidine‑6‑carboxylate dehydrogenase
RA	6,003,647	T→G	9.4%	E97A (GAA→GCA) ‡	amaB ←	L‑piperidine‑6‑carboxylate dehydrogenase
RA	6,009,531	C→T	8.9%	R441H (CGC→CAC)	PP_5263 ←	GGDEF domain‑containing protein
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,016,716	T→G	9.4%	intergenic (‑32/+195)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,722	T→G	9.7%	intergenic (‑38/+189)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,723	C→A	9.8%	intergenic (‑39/+188)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,729	C→A	10.0%	intergenic (‑45/+182)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,023,159	G→A	10.3%	intergenic (+74/+70)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,023,160	T→C	10.8%	intergenic (+75/+69)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,027,468	A→G	7.2%	V130A (GTG→GCG)	PP_5277 ←	MFS transporter
RA	6,031,831	A→T	5.2%	K229* (AAG→TAG) ‡	dppA‑IV →	dipeptide transport protein
RA	6,031,832	A→T	5.2%	K229M (AAG→ATG) ‡	dppA‑IV →	dipeptide transport protein
RA	6,039,236	C→T	7.2%	intergenic (‑256/+38)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,240	G→T	6.8%	intergenic (‑260/+34)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,241	A→C	8.1%	intergenic (‑261/+33)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,245	A→G	6.8%	intergenic (‑265/+29)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,040,794	T→A	11.1%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein
RA	6,051,668	C→A	14.6%	intergenic (+17/‑40)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,051,669	C→G	14.6%	intergenic (+18/‑39)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,051,670	T→G	14.3%	intergenic (+19/‑38)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,056,583	C→T	100%	S237F (TCC→TTC)	oxyR →	oxidative and nitrosative stress transcriptional dual regulator
RA	6,063,457	C→A	8.7%	R116S (CGC→AGC)	ubiC →	chorismate pyruvate‑lyase
RA	6,063,464	T→C	10.9%	L118P (CTG→CCG) ‡	ubiC →	chorismate pyruvate‑lyase
RA	6,063,465	G→C	11.1%	L118L (CTG→CTC) ‡	ubiC →	chorismate pyruvate‑lyase
RA	6,063,466	G→A	11.0%	G119S (GGC→AGC)	ubiC →	chorismate pyruvate‑lyase
RA	6,064,072	C→T	8.7%	A135V (GCG→GTG)	ubiA →	4‑hydroxybenzoate octaprenyltransferase
RA	6,072,589	C→T	12.9%	G556D (GGC→GAC)	PP_5327 ←	phosphate ABC transporter permease
RA	6,075,747	G→C	9.6%	A272G (GCC→GGC)	PP_5328 ←	phosphate ABC transporter permease
RA	6,080,988	T→A	15.1%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,080,989	T→A	15.2%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,082,642	Δ1 bp	6.9%	coding (392/1083 nt)	purK ←	5‑(carboxyamino)imidazole ribonucleotide synthase
RA	6,089,214	T→C	11.1%	Y131Y (TAT→TAC)	potF‑IV →	putrescine‑binding protein
RA	6,089,217	G→A	10.8%	M132I (ATG→ATA)	potF‑IV →	putrescine‑binding protein
RA	6,130,113	G→C	8.5%	A107G (GCC→GGC)	PP_5378 ←	metal‑binding protein
RA	6,150,510	C→T	7.2%	intergenic (‑2694/‑480)	PP_5393 ← / → PP_5395	metal‑binding chaperone/hypothetical protein
RA	6,170,225	G→A	6.5%	R24C (CGT→TGT)	PP_5408 ←	hypothetical protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171365–172968	173150–172972	5–1786	13 [12]	[12] 14	PP_16SA	PP_16SA
*	*	÷	NC_002947	176643–178398	181723–178402	5–5081	14 [12]	[12] 13	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]
*	*	÷	NC_002947	1367559	1367853	295	13 [12]	[12] 14	[PP_1193]	[PP_1193]
*	*	÷	NC_002947	2837058	2837260	203	13 [12]	[12] 13	[PP_2489]	[PP_2489]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 21956	37 (0.880)	3 (0.080)	3/244	NT	7.9%	coding (1759/1917 nt)	PP_0016	hypothetical protein
	?	NC_002947	= 21972	35 (0.880)					coding (1775/1917 nt)	PP_0016	hypothetical protein
*	?	NC_002947	= 62692	34 (0.810)	3 (0.080)	3/242	NT	7.6%	coding (937/1269 nt)	PP_0053	sulfide:quinone oxidoreductase
	?	NC_002947	= 62746	41 (1.040)					coding (991/1269 nt)	PP_0053	sulfide:quinone oxidoreductase
*	?	NC_002947	= 75122	37 (0.880)	4 (0.100)	4/244	NT	9.2%	coding (1088/1374 nt)	trkA	TrK potassium transporter NAD‑binding protein
	?	NC_002947	= 75151	44 (1.100)					coding (1059/1374 nt)	trkA	TrK potassium transporter NAD‑binding protein
*	?	NC_002947	88477 =	42 (0.990)	3 (0.080)	3/240	NT	6.1%	coding (841/1518 nt)	betC	choline‑sulfatase
	?	NC_002947	88524 =	53 (1.350)					coding (794/1518 nt)	betC	choline‑sulfatase
*	?	NC_002947	= 111497	52 (1.230)	4 (0.100)	4/248	NT	7.5%	coding (1517/1590 nt)	ctaD	cytochrome c oxidase subunit 1
	?	NC_002947	= 111528	49 (1.210)					coding (1548/1590 nt)	ctaD	cytochrome c oxidase subunit 1
*	?	NC_002947	= 116151	52 (1.230)	3 (0.070)	3/246	NT	5.5%	coding (454/894 nt)	PP_0110	CyoE‑like protoheme IX farnesyltransferase
	?	NC_002947	= 116188	54 (1.340)					coding (491/894 nt)	PP_0110	CyoE‑like protoheme IX farnesyltransferase
*	?	NC_002947	= 173113	NA (NA)	3 (0.070)	3/246	NT	100%	intergenic (+203/‑90)	PP_16SA/PP_23SA	16S ribosomal RNA/23S ribosomal RNA
	?	NC_002947	= 173155	0 (0.000)					intergenic (+245/‑48)	PP_16SA/PP_23SA	16S ribosomal RNA/23S ribosomal RNA
*	?	NC_002947	= 174906	NA (NA)	4 (0.100)	4/248	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	= 200306	51 (1.210)	5 (0.120)	5/248	NT	9.0%	coding (5812/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 200330	52 (1.280)					coding (5836/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	= 201181	47 (1.110)	4 (0.100)	4/244	NT	8.0%	coding (6687/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 201207	48 (1.200)					coding (6713/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	= 235329	42 (0.990)	9 (0.230)	8/238	NT	18.8%	intergenic (+26/+99)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	= 235390	39 (1.000)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
*	?	NC_002947	274817 =	56 (1.330)	3 (0.070)	3/252	NT	5.2%	coding (1131/1386 nt)	PP_0222	DszA family monooxygenase
	?	NC_002947	274850 =	55 (1.330)					coding (1098/1386 nt)	PP_0222	DszA family monooxygenase
*	?	NC_002947	276776 =	51 (1.210)	4 (0.100)	3/244	NT	7.8%	coding (392/1221 nt)	PP_0223	DszC family monooxygenase
	?	NC_002947	276836 =	46 (1.150)					coding (332/1221 nt)	PP_0223	DszC family monooxygenase
*	?	NC_002947	296348 =	50 (1.180)	3 (0.080)	3/244	NT	5.8%	coding (79/633 nt)	PP_0242	TetR family transcriptional regulator
	?	NC_002947	296399 =	50 (1.250)					coding (28/633 nt)	PP_0242	TetR family transcriptional regulator
*	?	NC_002947	337297 =	45 (1.070)	3 (0.070)	3/252	NT	6.1%	coding (454/1206 nt)	PP_0279	hypothetical protein
	?	NC_002947	337369 =	48 (1.160)					coding (382/1206 nt)	PP_0279	hypothetical protein
*	?	NC_002947	= 345369	56 (1.330)	4 (0.100)	4/246	NT	6.8%	coding (234/1068 nt)	mutY	A/G‑specific adenine glycosylase
	?	NC_002947	= 345427	56 (1.390)					coding (176/1068 nt)	mutY	A/G‑specific adenine glycosylase
*	?	NC_002947	383361 =	33 (0.780)	5 (0.130)	5/232	NT	13.6%	intergenic (+21/‑162)	PP_0319/PP_0320	hypothetical protein/methyl‑accepting chemotaxis transducer
	?	NC_002947	383431 =	34 (0.900)					intergenic (+91/‑92)	PP_0319/PP_0320	hypothetical protein/methyl‑accepting chemotaxis transducer
*	?	NC_002947	401809 =	48 (1.140)	4 (0.110) +ACATAATGGGGTGTCAG	4/224	NT	8.9%	intergenic (+336/+93)	PP_0334/PP_0335	transposase/glutathione S‑transferase family protein
	?	NC_002947	5786515 =	46 (1.090)					intergenic (+58/‑73)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	402553 =	57 (1.350)	4 (0.100)	3/244	NT	8.0%	coding (645/669 nt)	msrA	peptide methionine sulfoxide reductase MsrA
	?	NC_002947	402652 =	38 (0.950)					coding (546/669 nt)	msrA	peptide methionine sulfoxide reductase MsrA
*	?	NC_002947	413868 =	72 (1.710)	4 (0.100)	4/242	NT	5.9%	coding (2822/2934 nt)	glnE	glutamate‑ammonia‑ligase adenylyltransferase
	?	NC_002947	413904 =	60 (1.520)					coding (2858/2934 nt)	glnE	glutamate‑ammonia‑ligase adenylyltransferase
*	?	NC_002947	= 426730	44 (1.040)	4 (0.100)	4/246	NT	8.8%	coding (1069/2433 nt)	PP_0350	ferrichrome‑iron receptor
	?	NC_002947	= 426754	41 (1.020)					coding (1045/2433 nt)	PP_0350	ferrichrome‑iron receptor
*	?	NC_002947	436208 =	48 (1.140)	3 (0.070)	3/248	NT	5.8%	intergenic (+41/+192)	PP_0357/PP_0358	ACT domain‑containing protein/membrane protein
	?	NC_002947	436264 =	51 (1.260)					intergenic (+97/+136)	PP_0357/PP_0358	ACT domain‑containing protein/membrane protein
*	?	NC_002947	= 446004	41 (0.970)	4 (0.100)	4/248	NT	9.0%	coding (690/1806 nt)	PP_0368	acyl‑CoA dehydrogenase
	?	NC_002947	= 446076	41 (1.010)					coding (762/1806 nt)	PP_0368	acyl‑CoA dehydrogenase
*	?	NC_002947	= 452193	31 (0.730)	3 (0.070)	3/250	NT	8.2%	coding (111/1281 nt)	aruC	acetylornithine aminotransferase
	?	NC_002947	= 452231	37 (0.900)					coding (149/1281 nt)	aruC	acetylornithine aminotransferase
*	?	NC_002947	= 460798	40 (0.950)	4 (0.100)	4/248	NT	9.4%	coding (1667/2301 nt)	pqqF	coenzyme PQQ synthesis protein F
	?	NC_002947	= 460842	39 (0.960)					coding (1623/2301 nt)	pqqF	coenzyme PQQ synthesis protein F
*	?	NC_002947	492708 =	34 (0.810)	3 (0.080)	3/238	NT	8.6%	coding (158/1020 nt)	PP_0405	hypothetical protein
	?	NC_002947	492799 =	32 (0.820)					coding (249/1020 nt)	PP_0405	hypothetical protein
*	?	NC_002947	= 497023	60 (1.420)	6 (0.150)	6/242	NT	9.0%	coding (895/2388 nt)	PP_0409	two‑component system sensor histidine kinase
	?	NC_002947	= 497096	65 (1.640)					coding (968/2388 nt)	PP_0409	two‑component system sensor histidine kinase
*	?	NC_002947	= 503652	65 (1.540)	4 (0.100)	4/240	NT	5.9%	coding (683/828 nt)	PP_0414	polyamine ABC transporter permease
	?	NC_002947	= 503691	67 (1.710)					coding (722/828 nt)	PP_0414	polyamine ABC transporter permease
*	?	NC_002947	505818 =	49 (1.160)	6 (0.150)	5/246	NT	10.8%	coding (312/1482 nt)	trpE	anthranilate synthase component 1
	?	NC_002947	505877 =	52 (1.290)					coding (371/1482 nt)	trpE	anthranilate synthase component 1
*	?	NC_002947	= 539908	33 (0.780)	4 (0.100)	4/250	NT	10.5%	coding (2286/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
	?	NC_002947	= 539974	36 (0.880)					coding (2352/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
*	?	NC_002947	= 581532	39 (0.920)	4 (0.100)	4/244	NT	9.0%	coding (822/1428 nt)	selA	selenocysteine synthase
	?	NC_002947	= 581553	44 (1.100)					coding (843/1428 nt)	selA	selenocysteine synthase
*	?	NC_002947	= 595686	53 (1.260)	4 (0.100)	4/244	NT	6.8%	coding (468/1266 nt)	PP_0506	ABC transporter permease
	?	NC_002947	= 595711	59 (1.480)					coding (443/1266 nt)	PP_0506	ABC transporter permease
*	?	NC_002947	= 604803	47 (1.110)	3 (0.070)	3/246	NT	6.6%	coding (116/969 nt)	thiL	thiamin monophosphate kinase
	?	NC_002947	= 604838	40 (0.990)					coding (151/969 nt)	thiL	thiamin monophosphate kinase
*	?	NC_002947	642448 =	55 (1.300)	4 (0.100)	3/246	NT	7.6%	coding (539/1107 nt)	acoC	acetoin cleaving system dihydrolipoyllysine‑residue acetyltransferase
	?	NC_002947	642503 =	45 (1.120)					coding (484/1107 nt)	acoC	acetoin cleaving system dihydrolipoyllysine‑residue acetyltransferase
*	?	NC_002947	653210 =	67 (1.590)	4 (0.100)	4/248	NT	5.9%	coding (1533/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	653244 =	63 (1.550)					coding (1499/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
*	?	NC_002947	662685 =	48 (1.140)	3 (0.070)	3/246	NT	6.3%	coding (270/1338 nt)	PP_0569	MATE efflux family protein
	?	NC_002947	662722 =	44 (1.090)					coding (233/1338 nt)	PP_0569	MATE efflux family protein
*	?	NC_002947	670326 =	45 (1.070)	4 (0.100)	4/246	NT	7.9%	coding (1768/2355 nt)	pbpC	peptidoglycan glycosyltransferase
	?	NC_002947	670367 =	50 (1.240)					coding (1809/2355 nt)	pbpC	peptidoglycan glycosyltransferase
*	?	NC_002947	671140 =	45 (1.070)	4 (0.100)	4/242	NT	10.1%	coding (195/1725 nt)	PP_0573	hypothetical protein
	?	NC_002947	671177 =	29 (0.730)					coding (232/1725 nt)	PP_0573	hypothetical protein
*	?	NC_002947	674337 =	41 (0.970)	3 (0.080)	3/240	NT	7.0%	intergenic (‑229/+77)	PP_0575/PP_0576	membrane protein/lipoprotein
	?	NC_002947	674395 =	42 (1.070)					intergenic (‑287/+19)	PP_0575/PP_0576	membrane protein/lipoprotein
*	?	NC_002947	682055 =	46 (1.090)	3 (0.070)	3/250	NT	6.4%	coding (1218/1944 nt)	PP_0584	methyl‑accepting chemotaxis transducer
	?	NC_002947	682098 =	43 (1.050)					coding (1175/1944 nt)	PP_0584	methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 735469	44 (1.040)	4 (0.100)	4/244	NT	8.5%	coding (106/174 nt)	PP_0627	hypothetical protein
	?	NC_002947	= 735508	44 (1.100)					coding (67/174 nt)	PP_0627	hypothetical protein
*	?	NC_002947	742597 =	NA (NA)	7 (0.170)	5/252	NT	NA	coding (698/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	742657 =	NA (NA)					coding (758/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	795827 =	64 (1.520)	4 (0.100)	4/242	NT	7.3%	coding (1969/2439 nt)	PP_0680	ATP‑dependent protease‑like protein
	?	NC_002947	795887 =	41 (1.040)					coding (2029/2439 nt)	PP_0680	ATP‑dependent protease‑like protein
*	?	NC_002947	798522 =	46 (1.090)	4 (0.100)	3/242	NT	9.7%	coding (495/618 nt)	fklB‑I	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
	?	NC_002947	798611 =	31 (0.780)					coding (584/618 nt)	fklB‑I	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
*	?	NC_002947	849846 =	42 (0.990)	4 (0.100)	4/244	NT	10.0%	coding (572/1836 nt)	pcs	phosphatidylcholine synthase
	?	NC_002947	849885 =	32 (0.800)					coding (533/1836 nt)	pcs	phosphatidylcholine synthase
*	?	NC_002947	= 854716	54 (1.280)	3 (0.070)	3/246	NT	5.3%	coding (315/756 nt)	moeB	molybdopterin synthase adenylyltransferase subunit
	?	NC_002947	= 854746	55 (1.370)					coding (345/756 nt)	moeB	molybdopterin synthase adenylyltransferase subunit
*	?	NC_002947	886720 =	40 (0.950)	6 (0.150)	4/244	NT	13.5%	coding (2631/2718 nt)	PP_0767	LuxR family transcriptional regulator
	?	NC_002947	886755 =	39 (0.980)					coding (2666/2718 nt)	PP_0767	LuxR family transcriptional regulator
*	?	NC_002947	910350 =	53 (1.260)	3 (0.070)	3/248	NT	5.6%	coding (858/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
	?	NC_002947	910389 =	50 (1.230)					coding (897/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
*	?	NC_002947	= 913119	31 (0.730)	6 (0.150)	6/246	NT	16.8%	coding (774/948 nt)	fruK	1‑phosphofructokinase monomer
	?	NC_002947	= 913172	30 (0.750)					coding (827/948 nt)	fruK	1‑phosphofructokinase monomer
*	?	NC_002947	= 937436	51 (1.210)	3 (0.070)	3/248	NT	6.2%	coding (8186/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 937482	42 (1.040)					coding (8140/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 954579	49 (1.160)	3 (0.070)	3/246	NT	6.6%	coding (421/888 nt)	cyoE	protoheme IX farnesyltransferase
	?	NC_002947	= 954637	38 (0.940)					coding (479/888 nt)	cyoE	protoheme IX farnesyltransferase
*	?	NC_002947	960092 =	41 (0.970)	3 (0.070)	3/246	NT	6.8%	coding (361/411 nt)	PP_0821	hypothetical protein
	?	NC_002947	960124 =	43 (1.070)					coding (393/411 nt)	PP_0821	hypothetical protein
*	?	NC_002947	= 982600	34 (0.810)	4 (0.100)	4/246	NT	11.2%	coding (1477/1863 nt)	hscA	DnaK‑like molecular chaperone
	?	NC_002947	= 982652	31 (0.770)					coding (1529/1863 nt)	hscA	DnaK‑like molecular chaperone
*	?	NC_002947	1018034 =	41 (0.970)	3 (0.080)	3/240	NT	6.4%	intergenic (‑173/+58)	PP_5461/dppF	hypothetical protein/dipeptide ABC transporter ATP‑binding protein
	?	NC_002947	1018081 =	50 (1.270)					intergenic (‑220/+11)	PP_5461/dppF	hypothetical protein/dipeptide ABC transporter ATP‑binding protein
*	?	NC_002947	= 1025293	39 (0.920)	9 (0.270)	5/204	NT	21.7%	intergenic (‑147/+82)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	= 1025332	34 (1.020)					intergenic (‑186/+43)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	= 1039885	45 (1.070)	3 (0.080)	3/242	NT	6.4%	coding (242/921 nt)	PP_0899	ferredoxin reductase
	?	NC_002947	= 1039923	46 (1.160)					coding (280/921 nt)	PP_0899	ferredoxin reductase
*	?	NC_002947	1083135 =	53 (1.260)	3 (0.080)	3/242	NT	5.9%	coding (2790/3822 nt)	PP_0938	hypothetical protein
	?	NC_002947	1083175 =	46 (1.160)					coding (2830/3822 nt)	PP_0938	hypothetical protein
*	?	NC_002947	= 1090134	38 (0.900)	6 (0.150)	4/242	NT	15.1%	coding (995/1380 nt)	fumC‑I	class 2 fumarate hydratase
	?	NC_002947	= 1090156	32 (0.810)					coding (1017/1380 nt)	fumC‑I	class 2 fumarate hydratase
*	?	NC_002947	= 1092152	26 (0.620)	3 (0.080)	3/244	NT	10.8%	coding (535/909 nt)	PP_0947	membrane protein
	?	NC_002947	= 1092194	25 (0.630)					coding (577/909 nt)	PP_0947	membrane protein
*	?	NC_002947	1092602 =	50 (1.180)	3 (0.080)	3/244	NT	6.4%	coding (225/273 nt)	ptsH	phosphocarrier protein HPr
	?	NC_002947	1092684 =	40 (1.000)					coding (143/273 nt)	ptsH	phosphocarrier protein HPr
*	?	NC_002947	1181592 =	42 (0.990)	5 (0.120)	5/248	NT	10.8%	coding (645/1407 nt)	cumA	multicopper oxidase
	?	NC_002947	1181631 =	42 (1.040)					coding (684/1407 nt)	cumA	multicopper oxidase
*	?	NC_002947	1202795 =	55 (1.300)	4 (0.100)	4/248	NT	6.9%	coding (624/1089 nt)	xcpY	type II secretion pathway protein XcpY
	?	NC_002947	1202839 =	55 (1.360)					coding (668/1089 nt)	xcpY	type II secretion pathway protein XcpY
*	?	NC_002947	1203805 =	52 (1.230)	3 (0.070)	3/246	NT	5.5%	coding (148/645 nt)	gspN	type II secretion pathway protein GspN
	?	NC_002947	1203850 =	53 (1.320)					coding (193/645 nt)	gspN	type II secretion pathway protein GspN
*	?	NC_002947	= 1218645	43 (1.020)	4 (0.100)	3/246	NT	8.9%	coding (182/1137 nt)	PP_1064	alpha/beta family hydrolase
	?	NC_002947	= 1218666	41 (1.020)					coding (203/1137 nt)	PP_1064	alpha/beta family hydrolase
*	?	NC_002947	1240791 =	41 (0.970)	3 (0.070)	3/248	NT	7.7%	coding (1392/2109 nt)	PP_1080	molybdopterin‑binding oxidoreductase
	?	NC_002947	1240843 =	33 (0.810)					coding (1444/2109 nt)	PP_1080	molybdopterin‑binding oxidoreductase
*	?	NC_002947	= 1286992	50 (1.180)	5 (0.130)	5/238	NT	9.2%	coding (375/2145 nt)	PP_1125	putative Helicase
	?	NC_002947	= 1287049	52 (1.340)					coding (432/2145 nt)	PP_1125	putative Helicase
*	?	NC_002947	= 1291739	52 (1.230)	3 (0.070)	3/248	NT	5.4%	coding (530/1146 nt)	estC	carboxylesterase
	?	NC_002947	= 1291775	55 (1.360)					coding (566/1146 nt)	estC	carboxylesterase
*	?	NC_002947	= 1311719	22 (0.520)	5 (0.130)	5/232	NT	18.3%	intergenic (‑187/+91)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	= 1311778	25 (0.660)					intergenic (‑246/+32)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
*	?	NC_002947	= 1320342	46 (1.090)	3 (0.070)	3/246	NT	6.1%	coding (2389/2586 nt)	PP_1154	sensory box protein
	?	NC_002947	= 1320375	48 (1.190)					coding (2356/2586 nt)	PP_1154	sensory box protein
*	?	NC_002947	= 1377534	42 (0.990)	4 (0.100)	4/246	NT	8.5%	coding (99/1293 nt)	PP_1201	hypothetical protein
	?	NC_002947	= 1377544	46 (1.140)					coding (89/1293 nt)	PP_1201	hypothetical protein
*	?	NC_002947	= 1412122	39 (0.920)	3 (0.080)	3/244	NT	7.4%	coding (66/240 nt)	tusA‑I	sulfurtransferase
	?	NC_002947	= 1412154	38 (0.950)					coding (98/240 nt)	tusA‑I	sulfurtransferase
*	?	NC_002947	1419958 =	49 (1.160)	3 (0.070)	3/250	NT	6.1%	coding (55/366 nt) noncoding (83/90 nt)	PP_1244 PP_mr17	hypothetical protein C4 ncRNA
	?	NC_002947	1420038 =	45 (1.100)					noncoding (3/90 nt)	PP_mr17	C4 ncRNA
*	?	NC_002947	1436011 =	44 (1.040)	7 (0.170)	6/246	NT	14.0%	intergenic (‑48/+105)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	1436102 =	44 (1.090)					intergenic (‑139/+14)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
*	?	NC_002947	1455374 =	46 (1.090)	4 (0.100)	4/248	NT	7.8%	coding (908/1455 nt)	PP_1273	multidrug MFS transporter outer membrane protein
	?	NC_002947	1455462 =	50 (1.230)					coding (996/1455 nt)	PP_1273	multidrug MFS transporter outer membrane protein
*	?	NC_002947	1472511 =	53 (1.260)	3 (0.070)	3/246	NT	6.7%	coding (316/1491 nt)	alg8	glycosyltransferase Alg8
	?	NC_002947	1472544 =	33 (0.820)					coding (283/1491 nt)	alg8	glycosyltransferase Alg8
*	?	NC_002947	1481766 =	46 (1.090)	3 (0.080)	3/244	NT	6.5%	intergenic (‑29/+72)	rhlB/estB	ATP‑dependent RNA helicase RhlB/carboxylesterase
	?	NC_002947	1481805 =	43 (1.080)					intergenic (‑68/+33)	rhlB/estB	ATP‑dependent RNA helicase RhlB/carboxylesterase
*	?	NC_002947	= 1521404	51 (1.210)	5 (0.120)	5/248	NT	9.5%	coding (661/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	NC_002947	= 1521433	46 (1.130)					coding (690/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
*	?	NC_002947	1522319 =	42 (0.990)	3 (0.070)	3/246	NT	7.2%	coding (227/1215 nt)	ftsW	lipid II flippase
	?	NC_002947	1522355 =	37 (0.920)					coding (263/1215 nt)	ftsW	lipid II flippase
*	?	NC_002947	= 1558475	40 (0.950)	4 (0.100)	4/242	NT	8.4%	coding (426/732 nt)	PP_1369	hypothetical protein
	?	NC_002947	= 1558529	50 (1.260)					coding (372/732 nt)	PP_1369	hypothetical protein
*	?	NC_002947	1588596 =	35 (0.830)	3 (0.080)	3/242	NT	8.5%	coding (503/876 nt)	PP_1393	transcriptional regulator
	?	NC_002947	1588641 =	32 (0.810)					coding (458/876 nt)	PP_1393	transcriptional regulator
*	?	NC_002947	1599905 =	49 (1.160)	5 (0.120)	5/246	NT	10.4%	coding (1279/2292 nt)	bglX	beta‑D‑glucoside glucohydrolase
	?	NC_002947	1599952 =	39 (0.970)					coding (1232/2292 nt)	bglX	beta‑D‑glucoside glucohydrolase
*	?	NC_002947	1688514 =	39 (0.920)	3 (0.070)	3/248	NT	7.2%	coding (1023/1032 nt)	ydcT	polyamine ABC transporter ATP‑binding protein
	?	NC_002947	1688577 =	40 (0.990)					coding (960/1032 nt)	ydcT	polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	1738653 =	25 (0.590)	3 (0.070)	3/248	NT	10.9%	coding (540/1107 nt)	PP_1532	putative Phage integrase
	?	NC_002947	1738686 =	25 (0.620)					coding (507/1107 nt)	PP_1532	putative Phage integrase
*	?	NC_002947	= 1759854	50 (1.180)	4 (0.100)	3/244	NT	8.8%	coding (1017/1296 nt)	PP_1565	HK97 family portal protein
	?	NC_002947	= 1759902	36 (0.900)					coding (1065/1296 nt)	PP_1565	HK97 family portal protein
*	?	NC_002947	= 1763785	26 (0.620)	4 (0.100)	4/252	NT	11.4%	coding (127/369 nt)	PP_1572	hypothetical protein
	?	NC_002947	= 1763828	37 (0.900)					coding (170/369 nt)	PP_1572	hypothetical protein
*	?	NC_002947	= 1784612	42 (0.990)	3 (0.080)	3/242	NT	6.6%	coding (289/783 nt)	map	methionine aminopeptidase
	?	NC_002947	= 1784627	46 (1.160)					coding (274/783 nt)	map	methionine aminopeptidase
*	?	NC_002947	= 1838080	53 (1.260)	3 (0.080)	3/238	NT	5.5%	intergenic (+27/+77)	PP_1642/PP_1643	hypothetical protein/membrane protein
	?	NC_002947	= 1838142	54 (1.390)					intergenic (+89/+15)	PP_1642/PP_1643	hypothetical protein/membrane protein
*	?	NC_002947	= 1843419	45 (1.070)	3 (0.070)	3/246	NT	6.1%	coding (1375/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 1843446	49 (1.220)					coding (1348/2754 nt)	gacS	sensor protein GacS
*	?	NC_002947	= 1844589	41 (0.970)	4 (0.100)	4/250	NT	9.8%	coding (205/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 1844670	34 (0.830)					coding (124/2754 nt)	gacS	sensor protein GacS
*	?	NC_002947	1856189 =	39 (0.920)	4 (0.100)	4/248	NT	10.1%	coding (1201/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	1856229 =	34 (0.840)					coding (1241/1341 nt)	PP_1659	hypothetical protein
*	?	NC_002947	1867433 =	35 (0.830)	3 (0.070)	3/246	NT	8.8%	coding (155/612 nt)	cobO	bifunctional cob(I)alamin adenolsyltransferase/cobinamide ATP‑dependent adenolsyltransferase
	?	NC_002947	1867466 =	29 (0.720)					coding (188/612 nt)	cobO	bifunctional cob(I)alamin adenolsyltransferase/cobinamide ATP‑dependent adenolsyltransferase
*	?	NC_002947	1923366 =	35 (0.830)	4 (0.100)	3/246	NT	9.8%	coding (674/795 nt)	PP_1723	2‑aminoethylphosphonate ABC transporter permease
	?	NC_002947	1923403 =	40 (0.990)					coding (637/795 nt)	PP_1723	2‑aminoethylphosphonate ABC transporter permease
*	?	NC_002947	= 1947800	22 (0.520)	4 (0.120)	4/206	NT	17.2%	intergenic (‑61/+109)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
	?	NC_002947	= 1947867	21 (0.620)					intergenic (‑128/+42)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
*	?	NC_002947	2015610 =	40 (0.950)	4 (0.100)	4/248	NT	10.5%	coding (783/888 nt)	PP_1795	hypothetical protein
	?	NC_002947	2015652 =	30 (0.740)					coding (741/888 nt)	PP_1795	hypothetical protein
*	?	NC_002947	2048795 =	30 (0.710)	3 (0.090)	3/206	NT	10.2%	intergenic (+34/+105)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	= 5671612	29 (0.860)					intergenic (+31/‑139)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
*	?	NC_002947	= 2048810	29 (0.690)	4 (0.110)	4/224	NT	15.0%	intergenic (+49/+90)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	= 2048867	20 (0.550)					intergenic (+106/+33)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	= 2050595	11 (0.260)	4 (0.130)	4/184	NT	42.5%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050631	3 (0.100)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	2057795 =	34 (0.810)	4 (0.100)	4/250	NT	11.1%	intergenic (+11/+117)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2057893 =	31 (0.760)					intergenic (+109/+19)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	2062163 =	45 (1.070)	3 (0.070)	3/246	NT	6.5%	coding (1078/2058 nt)	PP_1838	membrane protein
	?	NC_002947	2062226 =	44 (1.090)					coding (1141/2058 nt)	PP_1838	membrane protein
*	?	NC_002947	= 2071242	35 (0.830)	3 (0.090)	3/206	NT	9.0%	intergenic (+194/+33)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
	?	NC_002947	5594183 =	33 (0.980)					intergenic (‑130/+15)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	2074972 =	49 (1.160)	3 (0.080)	3/244	NT	6.2%	coding (407/1188 nt)	ygaY	transporter YgaY
	?	NC_002947	2075028 =	44 (1.100)					coding (351/1188 nt)	ygaY	transporter YgaY
*	?	NC_002947	= 2086250	NA (NA)	5 (0.130)	4/242	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086296	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	2103503 =	31 (0.730)	4 (0.100)	4/242	NT	11.4%	coding (1381/1515 nt)	PP_1879	hypothetical protein
	?	NC_002947	2103536 =	33 (0.830)					coding (1348/1515 nt)	PP_1879	hypothetical protein
*	?	NC_002947	2104095 =	42 (0.990)	3 (0.070)	3/246	NT	7.5%	coding (789/1515 nt)	PP_1879	hypothetical protein
	?	NC_002947	2104134 =	34 (0.840)					coding (750/1515 nt)	PP_1879	hypothetical protein
*	?	NC_002947	= 2156940	26 (0.620)	3 (0.070)	3/252	NT	10.6%	coding (244/939 nt)	fabD	malonyl‑CoA‑ACP transacylase
	?	NC_002947	= 2156955	25 (0.610)					coding (259/939 nt)	fabD	malonyl‑CoA‑ACP transacylase
*	?	NC_002947	= 2242860	37 (0.880)	3 (0.070)	3/248	NT	7.9%	coding (433/540 nt)	PP_1978	TetR family transcriptional regulator
	?	NC_002947	= 2242892	34 (0.840)					coding (465/540 nt)	PP_1978	TetR family transcriptional regulator
*	?	NC_002947	2254672 =	54 (1.280)	3 (0.080)	3/240	NT	6.4%	coding (991/1083 nt)	leuB	3‑isopropylmalate dehydrogenase
	?	NC_002947	2254723 =	38 (0.970)					coding (1042/1083 nt)	leuB	3‑isopropylmalate dehydrogenase
*	?	NC_002947	= 2258059	NA (NA)	7 (0.180)	4/242	NT	40.4%	intergenic (+114/‑278)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	NC_002947	= 2258152	11 (0.260)					intergenic (+207/‑185)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
*	?	NC_002947	= 2260265	28 (0.660)	3 (0.070)	3/250	NT	8.8%	coding (853/2736 nt)	fimV	motility protein FimV
	?	NC_002947	= 2260300	35 (0.860)					coding (888/2736 nt)	fimV	motility protein FimV
*	?	NC_002947	= 2274147	32 (0.760)	6 (0.150)	5/246	NT	15.3%	coding (220/1041 nt)	PP_2004	AraC family transcriptional regulator
	?	NC_002947	= 2274179	36 (0.890)					coding (188/1041 nt)	PP_2004	AraC family transcriptional regulator
*	?	NC_002947	2301453 =	0 (0.000)	25 (0.610)	23/252	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	44 (1.060)	39/254	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 2320096	41 (0.970)	4 (0.100)	4/250	NT	8.6%	coding (1109/1296 nt)	PP_2040	MFS transporter
	?	NC_002947	= 2320133	45 (1.100)					coding (1146/1296 nt)	PP_2040	MFS transporter
*	?	NC_002947	= 2362137	65 (1.540)	4 (0.100)	3/244	NT	7.7%	coding (1740/2724 nt)	PP_2076	hypothetical protein
	?	NC_002947	3838131 =	34 (0.850)					coding (1726/2673 nt)	PP_3388	hypothetical protein
*	?	NC_002947	= 2364122	50 (1.180)	3 (0.080)	3/244	NT	6.2%	intergenic (‑246/+87)	PP_2076/lysA‑I	hypothetical protein/diaminopimelate decarboxylase
	?	NC_002947	= 2364139	43 (1.080)					intergenic (‑263/+70)	PP_2076/lysA‑I	hypothetical protein/diaminopimelate decarboxylase
*	?	NC_002947	2383150 =	41 (0.970)	3 (0.070)	3/246	NT	7.6%	coding (747/1671 nt)	PP_2091	serine/threonine‑protein kinase
	?	NC_002947	2383205 =	34 (0.840)					coding (692/1671 nt)	PP_2091	serine/threonine‑protein kinase
*	?	NC_002947	= 2406652	43 (1.020)	4 (0.100)	3/246	NT	8.9%	coding (813/906 nt)	PP_2110	ribosomal large subunit pseudouridine synthase
	?	NC_002947	= 2406691	41 (1.020)					coding (852/906 nt)	PP_2110	ribosomal large subunit pseudouridine synthase
*	?	NC_002947	2453996 =	30 (0.710)	3 (0.070)	3/246	NT	10.4%	coding (1123/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	2454041 =	23 (0.570)					coding (1078/3450 nt)	mfd	transcription‑repair coupling factor
*	?	NC_002947	= 2472115	25 (0.590)	3 (0.080)	3/244	NT	7.2%	intergenic (+19/+130)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2472313 =	54 (1.350)					coding (1783/1851 nt)	PP_2167	PhoD‑like phosphatase
*	?	NC_002947	2480384 =	52 (1.230)	3 (0.070)	3/246	NT	6.3%	coding (177/393 nt)	PP_2174	hypothetical protein
	?	NC_002947	2480429 =	39 (0.970)					coding (132/393 nt)	PP_2174	hypothetical protein
*	?	NC_002947	= 2507988	40 (0.950)	4 (0.100)	4/250	NT	10.2%	coding (186/999 nt)	PP_2201	alpha/beta family hydrolase
	?	NC_002947	= 2508031	32 (0.780)					coding (143/999 nt)	PP_2201	alpha/beta family hydrolase
*	?	NC_002947	= 2510535	36 (0.850)	4 (0.100)	4/240	NT	10.5%	coding (1196/1725 nt)	copA‑I	copper resistance protein A
	?	NC_002947	= 2510556	35 (0.890)					coding (1175/1725 nt)	copA‑I	copper resistance protein A
*	?	NC_002947	= 2558371	37 (0.880)	4 (0.100)	4/252	NT	10.1%	coding (631/2235 nt)	fepA	ferric enterobactin transport system outer membrane subunit
	?	NC_002947	= 2558394	35 (0.850)					coding (654/2235 nt)	fepA	ferric enterobactin transport system outer membrane subunit
*	?	NC_002947	2609580 =	40 (0.950)	3 (0.070)	3/252	NT	7.6%	coding (721/2190 nt)	PP_2286	hypothetical protein
	?	NC_002947	2609637 =	34 (0.820)					coding (778/2190 nt)	PP_2286	hypothetical protein
*	?	NC_002947	2615239 =	41 (0.970)	4 (0.100)	4/242	NT	9.8%	coding (4178/4710 nt)	PP_2287	internal core protein
	?	NC_002947	2615278 =	35 (0.880)					coding (4217/4710 nt)	PP_2287	internal core protein
*	?	NC_002947	2673825 =	40 (0.950)	4 (0.100)	3/244	NT	9.2%	intergenic (‑15/+7)	PP_5519/PP_2342	hypothetical protein/hypothetical protein
	?	NC_002947	2673861 =	41 (1.030)					coding (166/195 nt)	PP_2342	hypothetical protein
*	?	NC_002947	2682025 =	24 (0.570)	3 (0.080)	3/244	NT	11.4%	coding (591/1890 nt)	prpE	propionyl‑CoA synthetase
	?	NC_002947	2682062 =	24 (0.600)					coding (628/1890 nt)	prpE	propionyl‑CoA synthetase
*	?	NC_002947	= 2699263	33 (0.780)	4 (0.100)	4/250	NT	11.1%	coding (1248/1263 nt)	fsr‑II	fosmidomycin efflux system
	?	NC_002947	= 2699330	32 (0.780)					coding (1181/1263 nt)	fsr‑II	fosmidomycin efflux system
*	?	NC_002947	= 2706117	41 (0.970)	4 (0.100)	4/244	NT	9.4%	coding (3274/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2706191	38 (0.950)					coding (3348/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein
*	?	NC_002947	= 2710255	35 (0.830)	4 (0.100)	4/242	NT	10.5%	coding (834/1077 nt)	PP_2372	sugar‑binding protein
	?	NC_002947	= 2710295	35 (0.880)					coding (874/1077 nt)	PP_2372	sugar‑binding protein
*	?	NC_002947	2872578 =	42 (0.990)	5 (0.120)	4/248	NT	10.8%	coding (497/1164 nt)	PP_2525	hypothetical protein
	?	NC_002947	2872648 =	42 (1.040)					coding (427/1164 nt)	PP_2525	hypothetical protein
*	?	NC_002947	2875791 =	34 (0.810)	3 (0.070)	3/250	NT	9.0%	coding (92/1278 nt)	PP_2528	O‑acetylhomoserine (thiol)‑lyase
	?	NC_002947	2875829 =	28 (0.680)					coding (54/1278 nt)	PP_2528	O‑acetylhomoserine (thiol)‑lyase
*	?	NC_002947	2879294 =	36 (0.850)	3 (0.080)	3/244	NT	8.7%	coding (771/900 nt)	PP_2534	LysR family transcriptional regulator
	?	NC_002947	2879343 =	29 (0.730)					coding (722/900 nt)	PP_2534	LysR family transcriptional regulator
*	?	NC_002947	2937686 =	NA (NA)	48 (1.160)	19/252	NT	NA	intergenic (+43/+40)	PP_2569/PP_2570	MHS family metabolite MFS transporter/transposase
	?	NC_002947	= 2939382	NA (NA)					intergenic (‑328/+112)	PP_2570/PP_2572	transposase/hypothetical protein
*	?	NC_002947	= 2948421	25 (0.590)	3 (0.070)	3/246	NT	12.0%	coding (45/348 nt)	PP_2581	hypothetical protein
	?	NC_002947	= 2948452	20 (0.500)					coding (14/348 nt)	PP_2581	hypothetical protein
*	?	NC_002947	= 2972458	36 (0.850)	3 (0.070)	3/250	NT	8.3%	coding (1416/1713 nt)	PP_2600	hypothetical protein
	?	NC_002947	= 2972519	31 (0.760)					coding (1355/1713 nt)	PP_2600	hypothetical protein
*	?	NC_002947	= 2986914	33 (0.780)	3 (0.080)	3/242	NT	12.0%	coding (1485/2991 nt)	PP_2612	membrane protein
	?	NC_002947	= 2986958	13 (0.330)					coding (1441/2991 nt)	PP_2612	membrane protein
*	?	NC_002947	= 2987610	NA (NA)	4 (0.100)	4/244	NT	NA	coding (789/2991 nt)	PP_2612	membrane protein
	?	NC_002947	= 2987639	NA (NA)					coding (760/2991 nt)	PP_2612	membrane protein
*	?	NC_002947	2992707 =	27 (0.640)	3 (0.080)	3/242	NT	10.1%	coding (366/870 nt)	PP_2616	hypothetical protein
	?	NC_002947	2992743 =	28 (0.710)					coding (330/870 nt)	PP_2616	hypothetical protein
*	?	NC_002947	= 3018179	38 (0.900)	4 (0.100)	4/242	NT	10.9%	coding (2102/2283 nt)	bcsB	cellulose synthase and translocator subunit
	?	NC_002947	= 3018219	30 (0.760)					coding (2142/2283 nt)	bcsB	cellulose synthase and translocator subunit
*	?	NC_002947	= 3067504	32 (0.760)	4 (0.100)	4/246	NT	11.5%	coding (543/1788 nt)	qedH‑II	quinoprotein ethanol dehydrogenase
	?	NC_002947	= 3067530	31 (0.770)					coding (569/1788 nt)	qedH‑II	quinoprotein ethanol dehydrogenase
*	?	NC_002947	3084350 =	37 (0.880)	3 (0.080)	3/242	NT	8.0%	coding (760/987 nt)	PP_2693	putative Dipeptidase
	?	NC_002947	3084386 =	34 (0.860)					coding (724/987 nt)	PP_2693	putative Dipeptidase
*	?	NC_002947	= 3118551	41 (0.970)	4 (0.100)	4/250	NT	8.8%	coding (31/1188 nt)	cfa	cyclopropane‑fatty‑acyl‑phospholipid synthase
	?	NC_002947	= 3118616	43 (1.050)					intergenic (‑35/+15)	cfa/PP_2735	cyclopropane‑fatty‑acyl‑phospholipid synthase/hypothetical protein
*	?	NC_002947	3201301 =	47 (1.110)	3 (0.080)	3/242	NT	6.9%	coding (629/1368 nt)	PP_2808	oxidoreductase
	?	NC_002947	3201337 =	37 (0.930)					coding (665/1368 nt)	PP_2808	oxidoreductase
*	?	NC_002947	3221462 =	20 (0.470)	4 (0.100)	4/242	NT	20.1%	coding (1232/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	3221508 =	13 (0.330)					coding (1186/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 3276877	46 (1.090)	3 (0.070)	3/250	NT	5.7%	intergenic (‑182/+101)	PP_2875/ampC	hypothetical protein/beta‑lactamase
	?	NC_002947	= 3276906	54 (1.320)					intergenic (‑211/+72)	PP_2875/ampC	hypothetical protein/beta‑lactamase
*	?	NC_002947	3292622 =	40 (0.950)	3 (0.080)	3/240	NT	8.7%	coding (1906/3675 nt)	PP_2893	hypothetical protein
	?	NC_002947	3292688 =	26 (0.660)					coding (1972/3675 nt)	PP_2893	hypothetical protein
*	?	NC_002947	= 3298402	40 (0.950)	3 (0.070)	3/248	NT	7.4%	coding (619/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ
	?	NC_002947	= 3298453	37 (0.910)					coding (670/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ
*	?	NC_002947	= 3305527	28 (0.660)	3 (0.080)	3/244	NT	9.3%	coding (644/1392 nt)	PP_2906	sensor histidine kinase
	?	NC_002947	= 3305565	32 (0.800)					coding (606/1392 nt)	PP_2906	sensor histidine kinase
*	?	NC_002947	= 3307249	28 (0.660)	5 (0.130)	4/240	NT	16.4%	coding (350/696 nt)	csiR	DNA‑binding transcriptional repressor
	?	NC_002947	= 3307303	25 (0.640)					coding (296/696 nt)	csiR	DNA‑binding transcriptional repressor
*	?	NC_002947	3333433 =	29 (0.690)	4 (0.100)	4/246	NT	12.4%	coding (373/705 nt)	PP_2931	hypothetical protein
	?	NC_002947	3333482 =	29 (0.720)					coding (324/705 nt)	PP_2931	hypothetical protein
*	?	NC_002947	3393834 =	21 (0.500)	3 (0.070)	3/250	NT	13.2%	coding (573/900 nt)	PP_2997	protein CnmA
	?	NC_002947	3393867 =	19 (0.460)					coding (540/900 nt)	PP_2997	protein CnmA
*	?	NC_002947	= 3528043	44 (1.040)	4 (0.100)	4/244	NT	8.3%	coding (1254/1419 nt)	imuB	DNA repair DNA linked protein
	?	NC_002947	= 3528091	47 (1.180)					coding (1302/1419 nt)	imuB	DNA repair DNA linked protein
*	?	NC_002947	3529386 =	37 (0.880)	5 (0.130)	5/244	NT	13.0%	coding (1203/3102 nt)	dnaEB	error‑prone DNA polymerase
	?	NC_002947	3529437 =	32 (0.800)					coding (1254/3102 nt)	dnaEB	error‑prone DNA polymerase
*	?	NC_002947	= 3601262	42 (0.990)	3 (0.070)	3/246	NT	6.1%	intergenic (‑70/‑22)	PP_3176/PP_3177	MFS transporter/hypothetical protein
	?	NC_002947	= 3601318	52 (1.290)					coding (35/1170 nt)	PP_3177	hypothetical protein
*	?	NC_002947	3641049 =	50 (1.180)	4 (0.100)	3/246	NT	7.4%	coding (729/945 nt)	PP_3208	Pdr/VanB family oxidoreductase
	?	NC_002947	3641112 =	52 (1.290)					coding (666/945 nt)	PP_3208	Pdr/VanB family oxidoreductase
*	?	NC_002947	3667005 =	41 (0.970)	5 (0.130)	3/240	NT	12.6%	coding (641/693 nt)	PP_3230	phosphoribosyl transferase domain‑containing protein
	?	NC_002947	3667054 =	31 (0.790)					coding (690/693 nt)	PP_3230	phosphoribosyl transferase domain‑containing protein
*	?	NC_002947	= 3723177	46 (1.090)	5 (0.120)	5/252	NT	11.4%	coding (434/927 nt)	PP_3288	universal stress protein family protein
	?	NC_002947	= 3723224	33 (0.800)					coding (481/927 nt)	PP_3288	universal stress protein family protein
*	?	NC_002947	= 3751094	44 (1.040)	3 (0.070)	3/248	NT	7.2%	coding (2789/2823 nt)	PP_3316	chaperone‑associated ATPase
	?	NC_002947	= 3751175	35 (0.860)					coding (2708/2823 nt)	PP_3316	chaperone‑associated ATPase
*	?	NC_002947	= 3785603	39 (0.920)	4 (0.100)	3/244	NT	9.7%	coding (798/1146 nt)	PP_3348	GGDEF domain‑containing protein
	?	NC_002947	= 3785643	38 (0.950)					coding (838/1146 nt)	PP_3348	GGDEF domain‑containing protein
*	?	NC_002947	3816294 =	26 (0.620)	3 (0.080)	3/242	NT	9.9%	coding (527/702 nt)	cpxR	two‑component system regulator CpxR
	?	NC_002947	3816346 =	30 (0.760)					coding (475/702 nt)	cpxR	two‑component system regulator CpxR
*	?	NC_002947	= 3913878	48 (1.140)	3 (0.080)	3/240	NT	6.0%	coding (201/1302 nt)	PP_3453	sensor protein RstB
	?	NC_002947	= 3913915	50 (1.270)					coding (164/1302 nt)	PP_3453	sensor protein RstB
*	?	NC_002947	= 3913955	48 (1.140)	3 (0.070)	3/246	NT	6.1%	coding (124/1302 nt)	PP_3453	sensor protein RstB
	?	NC_002947	= 3913988	46 (1.140)					coding (91/1302 nt)	PP_3453	sensor protein RstB
*	?	NC_002947	3951450 =	37 (0.880)	4 (0.100)	4/244	NT	11.9%	coding (447/666 nt)	PP_3487	hypothetical protein
	?	NC_002947	3951493 =	24 (0.600)					coding (404/666 nt)	PP_3487	hypothetical protein
*	?	NC_002947	= 3968879	NA (NA)	6 (0.150)	6/244	NT	12.9%	coding (1007/1179 nt)	PP_3498	transposase
	?	NC_002947	3968942 =	43 (1.020)					coding (1070/1179 nt)	PP_3498	transposase
*	?	NC_002947	= 3989295	40 (0.950)	5 (0.120)	5/246	NT	12.3%	coding (1813/2085 nt)	oplA	5‑oxoprolinase A
	?	NC_002947	= 3989343	33 (0.820)					coding (1861/2085 nt)	oplA	5‑oxoprolinase A
*	?	NC_002947	= 4002814	53 (1.260)	3 (0.080)	3/242	NT	5.6%	coding (72/600 nt)	PP_3531	hypothetical protein
	?	NC_002947	= 4002854	52 (1.310)					coding (112/600 nt)	PP_3531	hypothetical protein
*	?	NC_002947	= 4019785	35 (0.830)	3 (0.070)	3/246	NT	7.7%	coding (496/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4019828	39 (0.970)					coding (539/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 4035709	50 (1.180)	4 (0.100)	4/244	NT	7.1%	coding (760/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 4035764	58 (1.450)					coding (815/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer
*	?	NC_002947	4043365 =	45 (1.070)	3 (0.080)	3/240	NT	6.8%	coding (379/978 nt)	PP_3564	AraC family transcriptional regulator
	?	NC_002947	4043439 =	40 (1.020)					coding (305/978 nt)	PP_3564	AraC family transcriptional regulator
*	?	NC_002947	= 4052589	39 (0.920)	3 (0.070)	3/250	NT	7.3%	coding (521/678 nt)	PP_3572	hypothetical protein
	?	NC_002947	= 4052630	38 (0.930)					coding (480/678 nt)	PP_3572	hypothetical protein
*	?	NC_002947	= 4056575	26 (0.620)	3 (0.080)	3/242	NT	10.3%	coding (1087/2406 nt)	PP_3575	ferric siderophore receptor
	?	NC_002947	= 4056629	28 (0.710)					coding (1033/2406 nt)	PP_3575	ferric siderophore receptor
*	?	NC_002947	= 4079276	43 (1.020)	5 (0.130)	4/242	NT	10.8%	intergenic (‑80/+304)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
	?	NC_002947	= 4079317	42 (1.060)					intergenic (‑121/+263)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
*	?	NC_002947	4116100 =	61 (1.450)	4 (0.100)	4/248	NT	7.1%	coding (486/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor
	?	NC_002947	4116133 =	46 (1.130)					coding (453/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor
*	?	NC_002947	4121367 =	41 (0.970)	3 (0.080)	3/244	NT	7.1%	coding (420/789 nt)	PP_3624	hypothetical protein
	?	NC_002947	4121403 =	40 (1.000)					coding (384/789 nt)	PP_3624	hypothetical protein
*	?	NC_002947	= 4122505	41 (0.970)	4 (0.100)	4/244	NT	9.3%	coding (131/642 nt)	PP_3625	LysE family transporter
	?	NC_002947	= 4122534	39 (0.980)					coding (102/642 nt)	PP_3625	LysE family transporter
*	?	NC_002947	4124867 =	36 (0.850)	3 (0.080)	3/244	NT	8.6%	coding (1342/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein
	?	NC_002947	4124918 =	30 (0.750)					coding (1393/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein
*	?	NC_002947	4127932 =	45 (1.070)	3 (0.070)	3/248	NT	6.0%	coding (301/651 nt)	htrG	signal transduction protein
	?	NC_002947	4127966 =	51 (1.260)					coding (335/651 nt)	htrG	signal transduction protein
*	?	NC_002947	4149705 =	38 (0.900)	4 (0.100)	4/242	NT	9.5%	coding (157/453 nt)	PP_3654	leucine‑responsive regulatory protein
	?	NC_002947	4149783 =	41 (1.040)					coding (235/453 nt)	PP_3654	leucine‑responsive regulatory protein
*	?	NC_002947	= 4160852	19 (0.450)	5 (0.130)	5/244	NT	21.8%	coding (1205/1302 nt)	PP_3663	GGDEF domain‑containing protein
	?	NC_002947	= 4160875	18 (0.450)					coding (1182/1302 nt)	PP_3663	GGDEF domain‑containing protein
*	?	NC_002947	= 4165585	35 (0.830)	4 (0.100)	4/248	NT	9.6%	coding (517/1335 nt)	PP_3666	MHS family metabolite MFS transporter
	?	NC_002947	= 4165655	42 (1.040)					coding (447/1335 nt)	PP_3666	MHS family metabolite MFS transporter
*	?	NC_002947	= 4171230	33 (0.780)	4 (0.100)	3/244	NT	11.7%	intergenic (+46/+14)	PP_3669/PP_3670	LysR family transcriptional regulator/DMT superfamily permease
	?	NC_002947	= 4171262	29 (0.730)					coding (861/879 nt)	PP_3670	DMT superfamily permease
*	?	NC_002947	4238005 =	47 (1.110)	4 (0.100)	4/244	NT	8.3%	coding (245/1122 nt)	catB	muconate cycloisomerase 1
	?	NC_002947	4238048 =	44 (1.100)					coding (202/1122 nt)	catB	muconate cycloisomerase 1
*	?	NC_002947	= 4243539	53 (1.260)	3 (0.080)	3/244	NT	5.4%	coding (199/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase
	?	NC_002947	= 4243563	55 (1.380)					coding (175/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase
*	?	NC_002947	= 4253409	43 (1.020)	3 (0.070)	3/246	NT	6.5%	coding (270/1407 nt)	rocE	amino acid permease RocE
	?	NC_002947	= 4253453	45 (1.120)					coding (226/1407 nt)	rocE	amino acid permease RocE
*	?	NC_002947	4266523 =	43 (1.020)	4 (0.100)	4/244	NT	9.1%	intergenic (‑65/+81)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	4266610 =	39 (0.980)					coding (1248/1254 nt)	galP‑IV	porin‑like protein
*	?	NC_002947	= 4268632	32 (0.760)	3 (0.070)	3/246	NT	9.0%	coding (669/1341 nt)	PP_3740	MFS transporter
	?	NC_002947	= 4268681	30 (0.750)					coding (620/1341 nt)	PP_3740	MFS transporter
*	?	NC_002947	= 4272869	55 (1.300)	3 (0.080)	3/244	NT	5.4%	coding (163/318 nt)	PP_3743	hypothetical protein
	?	NC_002947	= 4272876	53 (1.330)					coding (170/318 nt)	PP_3743	hypothetical protein
*	?	NC_002947	4351863 =	42 (0.990)	3 (0.070)	3/250	NT	7.6%	coding (342/381 nt)	PP_3824	hypothetical protein
	?	NC_002947	4351938 =	32 (0.780)					coding (267/381 nt)	PP_3824	hypothetical protein
*	?	NC_002947	4359350 =	43 (1.020)	3 (0.070)	3/246	NT	6.5%	coding (606/1446 nt)	PP_3834	hypothetical protein
	?	NC_002947	4359391 =	46 (1.140)					coding (565/1446 nt)	PP_3834	hypothetical protein
*	?	NC_002947	4394270 =	40 (0.950)	3 (0.070)	3/246	NT	6.6%	coding (702/1488 nt)	PP_3869	sheath protein
	?	NC_002947	4394363 =	47 (1.170)					coding (609/1488 nt)	PP_3869	sheath protein
*	?	NC_002947	= 4395216	45 (1.070)	5 (0.130)	5/244	NT	10.5%	coding (558/594 nt)	PP_3871	hypothetical protein
	?	NC_002947	= 4395236	43 (1.080)					coding (538/594 nt)	PP_3871	hypothetical protein
*	?	NC_002947	= 4449587	43 (1.020)	3 (0.070)	3/250	NT	6.8%	intergenic (+102/‑340)	nicR/nicA	HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
	?	NC_002947	= 4449639	40 (0.980)					intergenic (+154/‑288)	nicR/nicA	HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
*	?	NC_002947	4455885 =	30 (0.710)	4 (0.100)	4/252	NT	10.3%	coding (1100/2178 nt)	PP_3950	methyl‑accepting chemotaxis transducer
	?	NC_002947	4455936 =	40 (0.970)					coding (1049/2178 nt)	PP_3950	methyl‑accepting chemotaxis transducer
*	?	NC_002947	4474178 =	58 (1.370)	3 (0.070)	3/246	NT	5.6%	coding (1358/1536 nt)	PP_3964	transposase
	?	NC_002947	4474231 =	45 (1.120)					coding (1305/1536 nt)	PP_3964	transposase
*	?	NC_002947	4501809 =	42 (0.990)	4 (0.100)	4/244	NT	9.4%	coding (273/672 nt)	yccA	FtsH‑mediated proteolysis substrate/modulator
	?	NC_002947	4501859 =	37 (0.930)					coding (323/672 nt)	yccA	FtsH‑mediated proteolysis substrate/modulator
*	?	NC_002947	= 4520698	51 (1.210)	3 (0.070)	3/246	NT	6.1%	coding (1040/1257 nt)	icd	NADP(+)‑specific isocitrate dehydrogenase
	?	NC_002947	= 4520766	44 (1.090)					coding (972/1257 nt)	icd	NADP(+)‑specific isocitrate dehydrogenase
*	?	NC_002947	= 4522668	34 (0.810)	3 (0.080)	3/244	NT	7.7%	coding (517/2226 nt)	idh	isocitrate dehydrogenase
	?	NC_002947	= 4522689	40 (1.000)					coding (538/2226 nt)	idh	isocitrate dehydrogenase
*	?	NC_002947	4542437 =	36 (0.850)	5 (0.120)	4/248	NT	11.2%	coding (1154/1503 nt)	nhaB	Na(+)/H(+) antiporter NhaB
	?	NC_002947	4542503 =	45 (1.110)					coding (1220/1503 nt)	nhaB	Na(+)/H(+) antiporter NhaB
*	?	NC_002947	4557241 =	49 (1.160)	3 (0.070)	3/250	NT	5.7%	coding (236/984 nt)	gntZ	6‑phosphogluconate dehydrogenase
	?	NC_002947	4557288 =	52 (1.270)					coding (189/984 nt)	gntZ	6‑phosphogluconate dehydrogenase
*	?	NC_002947	= 4559104	47 (1.110)	5 (0.130)	5/244	NT	9.9%	coding (60/963 nt)	PP_4046	hypothetical protein
	?	NC_002947	= 4559118	47 (1.180)					coding (46/963 nt)	PP_4046	hypothetical protein
*	?	NC_002947	= 4569586	61 (1.450)	3 (0.070)	3/246	NT	5.2%	coding (1516/2070 nt)	malQ	4‑alpha‑glucanotransferase
	?	NC_002947	= 4569622	52 (1.290)					coding (1552/2070 nt)	malQ	4‑alpha‑glucanotransferase
*	?	NC_002947	4688101 =	26 (0.620)	5 (0.130)	5/242	NT	14.2%	coding (2/1020 nt)	PP_4149	ABC transporter permease
	?	NC_002947	4688149 =	36 (0.910)					coding (50/1020 nt)	PP_4149	ABC transporter permease
*	?	NC_002947	= 4705453	33 (0.780)	3 (0.070)	3/246	NT	6.9%	coding (1039/1053 nt)	PP_4162	membrane protein
	?	NC_002947	= 4705500	49 (1.220)					coding (992/1053 nt)	PP_4162	membrane protein
*	?	NC_002947	4716860 =	44 (1.040)	3 (0.070)	3/250	NT	6.6%	intergenic (+159/‑49)	PP_4173/fabA	two‑component system sensor histidine kinase/response regulator/3R‑3‑hydroxydecanoyl‑ACP dehydratase
	?	NC_002947	4716886 =	42 (1.030)					intergenic (+185/‑23)	PP_4173/fabA	two‑component system sensor histidine kinase/response regulator/3R‑3‑hydroxydecanoyl‑ACP dehydratase
*	?	NC_002947	4727724 =	44 (1.040)	3 (0.070)	3/246	NT	6.9%	intergenic (‑343/+61)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha
	?	NC_002947	4727773 =	39 (0.970)					intergenic (‑392/+12)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha
*	?	NC_002947	4740646 =	63 (1.490)	4 (0.100)	3/242	NT	6.8%	coding (1173/1290 nt)	gltA	citrate synthase
	?	NC_002947	4740685 =	50 (1.260)					coding (1212/1290 nt)	gltA	citrate synthase
*	?	NC_002947	4766340 =	44 (1.040)	4 (0.100)	4/248	NT	9.1%	coding (993/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
	?	NC_002947	4766371 =	38 (0.940)					coding (1024/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
*	?	NC_002947	4768643 =	35 (0.830)	3 (0.080)	3/244	NT	8.0%	coding (169/957 nt)	PP_4218	lipase/esterase family protein
	?	NC_002947	4768685 =	36 (0.900)					coding (127/957 nt)	PP_4218	lipase/esterase family protein
*	?	NC_002947	= 4793328	44 (1.040)	3 (0.070)	3/246	NT	6.0%	coding (512/6525 nt)	pvdI	non‑ribosomal peptide synthetase
	?	NC_002947	= 4793364	52 (1.290)					coding (476/6525 nt)	pvdI	non‑ribosomal peptide synthetase
*	?	NC_002947	4794992 =	35 (0.830)	4 (0.100)	4/248	NT	11.3%	intergenic (‑14/+92)	PP_4222/pvdH	protein SyrP/diaminobutyrate‑2‑oxoglutarate transaminase
	?	NC_002947	4795022 =	29 (0.710)					intergenic (‑44/+62)	PP_4222/pvdH	protein SyrP/diaminobutyrate‑2‑oxoglutarate transaminase
*	?	NC_002947	= 4795079	34 (0.810)	3 (0.070)	3/246	NT	8.6%	intergenic (‑101/+5)	PP_4222/pvdH	protein SyrP/diaminobutyrate‑2‑oxoglutarate transaminase
	?	NC_002947	= 4795114	31 (0.770)					coding (1329/1359 nt)	pvdH	diaminobutyrate‑2‑oxoglutarate transaminase
*	?	NC_002947	4808174 =	0 (0.000)	14 (0.460)	10/188	NT	51.9%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	26 (0.850)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4808179	0 (0.000)	18 (0.470)	14/234	NT	48.6%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	38 (0.990)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4864409	33 (0.780)	3 (0.080)	3/234	NT	8.5%	coding (1464/3489 nt)	smc	chromosome partition protein Smc
	?	NC_002947	= 4864434	35 (0.910)					coding (1439/3489 nt)	smc	chromosome partition protein Smc
*	?	NC_002947	4880260 =	32 (0.760)	4 (0.100)	3/242	NT	13.6%	coding (870/1341 nt)	PP_4289	membrane protein
	?	NC_002947	4880298 =	21 (0.530)					coding (908/1341 nt)	PP_4289	membrane protein
*	?	NC_002947	= 4893579	36 (0.850)	4 (0.120)	4/204	NT	11.9%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4893604	31 (0.930)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	4911617 =	39 (0.920)	4 (0.100)	4/246	NT	9.4%	coding (95/1197 nt)	cycH	cytochrome c‑type biogenesis protein
	?	NC_002947	4911645 =	40 (0.990)					coding (67/1197 nt)	cycH	cytochrome c‑type biogenesis protein
*	?	NC_002947	4931072 =	23 (0.540)	4 (0.100)	4/246	NT	15.4%	coding (298/375 nt)	cheY	two‑component system response regulator
	?	NC_002947	4931101 =	22 (0.550)					coding (269/375 nt)	cheY	two‑component system response regulator
*	?	NC_002947	= 4954611	38 (0.900)	3 (0.070)	3/248	NT	7.8%	coding (135/306 nt)	PP_4364	anti‑sigma F factor antagonist
	?	NC_002947	= 4954648	34 (0.840)					coding (98/306 nt)	PP_4364	anti‑sigma F factor antagonist
*	?	NC_002947	5052661 =	43 (1.020)	3 (0.070)	3/248	NT	6.4%	coding (1790/1833 nt)	gsiA	glutathione ABC transporter ATP‑binding protein
	?	NC_002947	5052687 =	47 (1.160)					coding (1764/1833 nt)	gsiA	glutathione ABC transporter ATP‑binding protein
*	?	NC_002947	= 5081914	38 (0.900)	4 (0.100)	4/252	NT	8.8%	coding (2352/2625 nt)	alaS	alanine‑‑tRNA ligase
	?	NC_002947	= 5081951	46 (1.120)					coding (2315/2625 nt)	alaS	alanine‑‑tRNA ligase
*	?	NC_002947	5118958 =	49 (1.160)	3 (0.070)	3/252	NT	5.4%	coding (732/1341 nt)	PP_4505	sensor histidine kinase
	?	NC_002947	5119003 =	57 (1.380)					coding (777/1341 nt)	PP_4505	sensor histidine kinase
*	?	NC_002947	5125087 =	30 (0.710)	4 (0.120)	4/206	NT	18.6%	intergenic (+61/‑121)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5125166 =	11 (0.330)					intergenic (+140/‑42)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	5128009 =	43 (1.020)	3 (0.070)	3/246	NT	8.2%	coding (1562/2187 nt)	PP_4514	alpha/beta hydrolase superfamily esterase
	?	NC_002947	5128063 =	26 (0.650)					coding (1616/2187 nt)	PP_4514	alpha/beta hydrolase superfamily esterase
*	?	NC_002947	5153589 =	42 (0.990)	7 (0.170)	4/246	NT	14.7%	coding (624/876 nt)	PP_4537	membrane protein
	?	NC_002947	5153628 =	41 (1.020)					coding (585/876 nt)	PP_4537	membrane protein
*	?	NC_002947	5161016 =	30 (0.710)	4 (0.100)	3/250	NT	13.5%	coding (39/1212 nt)	PP_4543	hypothetical protein
	?	NC_002947	5161043 =	22 (0.540)					coding (12/1212 nt)	PP_4543	hypothetical protein
*	?	NC_002947	= 5205100	40 (0.950)	3 (0.080)	3/244	NT	6.7%	coding (462/471 nt)	PP_4585	TrmH family RNA methyltransferase
	?	NC_002947	= 5205127	46 (1.150)					intergenic (+18/+97)	PP_4585/PP_4586	TrmH family RNA methyltransferase/hypothetical protein
*	?	NC_002947	5209354 =	54 (1.280)	3 (0.080)	3/244	NT	7.1%	coding (781/1134 nt)	rnd	ribonuclease D
	?	NC_002947	5209393 =	28 (0.700)					coding (742/1134 nt)	rnd	ribonuclease D
*	?	NC_002947	5210219 =	45 (1.070)	4 (0.110)	4/226	NT	10.5%	intergenic (‑85/+93)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
	?	NC_002947	5210310 =	29 (0.780)					intergenic (‑176/+2)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
*	?	NC_002947	= 5211690	29 (0.690)	3 (0.080)	3/242	NT	8.7%	coding (260/1638 nt)	PP_4592	metal dependent hydrolase
	?	NC_002947	= 5211711	36 (0.910)					coding (239/1638 nt)	PP_4592	metal dependent hydrolase
*	?	NC_002947	= 5226289	56 (1.330)	4 (0.100)	4/246	NT	7.1%	coding (527/876 nt)	PP_4605	AraC family transcriptional regulator
	?	NC_002947	= 5226312	51 (1.270)					coding (550/876 nt)	PP_4605	AraC family transcriptional regulator
*	?	NC_002947	= 5245883	48 (1.140)	3 (0.070)	3/246	NT	6.1%	coding (2778/3303 nt)	PP_4623	hypothetical protein
	?	NC_002947	= 5245916	47 (1.170)					coding (2745/3303 nt)	PP_4623	hypothetical protein
*	?	NC_002947	5249547 =	53 (1.260)	6 (0.150)	6/248	NT	10.4%	coding (275/906 nt)	PP_4624	alpha/beta family hydrolase
	?	NC_002947	5249578 =	52 (1.280)					coding (244/906 nt)	PP_4624	alpha/beta family hydrolase
*	?	NC_002947	= 5270866	49 (1.160)	3 (0.070)	3/248	NT	5.8%	coding (352/420 nt)	mscL	large‑conductance mechanosensitive channel
	?	NC_002947	= 5270884	51 (1.260)					coding (370/420 nt)	mscL	large‑conductance mechanosensitive channel
*	?	NC_002947	5293930 =	34 (0.810)	3 (0.070)	3/246	NT	7.9%	coding (457/1527 nt)	mmsA‑II	methylmalonate‑semialdehyde dehydrogenase
	?	NC_002947	5293986 =	38 (0.940)					coding (401/1527 nt)	mmsA‑II	methylmalonate‑semialdehyde dehydrogenase
*	?	NC_002947	= 5296394	56 (1.330)	3 (0.080)	3/244	NT	5.4%	coding (969/1272 nt)	TpbB	diguanylate cyclase
	?	NC_002947	= 5296417	52 (1.300)					coding (946/1272 nt)	TpbB	diguanylate cyclase
*	?	NC_002947	5318553 =	38 (0.900)	3 (0.080)	3/242	NT	7.5%	coding (821/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase
	?	NC_002947	5318611 =	38 (0.960)					coding (763/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase
*	?	NC_002947	5382398 =	32 (0.760)	4 (0.130)	4/188	NT	19.4%	intergenic (+18/+115)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	5382496 =	10 (0.330)					intergenic (+116/+17)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
*	?	NC_002947	5389220 =	48 (1.140)	3 (0.070)	3/248	NT	5.9%	coding (2730/2811 nt)	dld2	D‑lactate dehydrogenase
	?	NC_002947	5389259 =	50 (1.230)					coding (2769/2811 nt)	dld2	D‑lactate dehydrogenase
*	?	NC_002947	= 5390643	33 (0.780)	3 (0.070)	3/250	NT	7.9%	noncoding (11/87 nt)	PP_mr56	C4 ncRNA
	?	NC_002947	= 5390712	38 (0.930)					noncoding (80/87 nt)	PP_mr56	C4 ncRNA
*	?	NC_002947	= 5397806	52 (1.230)	3 (0.080)	3/240	NT	5.9%	coding (818/1731 nt)	hsdS	type I restriction modification system specificity protein
	?	NC_002947	= 5397858	47 (1.200)					coding (870/1731 nt)	hsdS	type I restriction modification system specificity protein
*	?	NC_002947	5452442 =	38 (0.900)	3 (0.070)	3/246	NT	7.3%	coding (973/1518 nt)	lnt	apolipoprotein N‑acyltransferase
	?	NC_002947	5452471 =	40 (0.990)					coding (1002/1518 nt)	lnt	apolipoprotein N‑acyltransferase
*	?	NC_002947	5513242 =	40 (0.950)	3 (0.090)	3/206	NT	8.5%	intergenic (+20/‑134)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	5513350 =	33 (0.980)					intergenic (+128/‑26)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	5519825 =	30 (0.710)	5 (0.130)	5/238	NT	18.0%	intergenic (‑96/‑130)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5519910 =	18 (0.460)					intergenic (‑181/‑45)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	= 5520860	38 (0.900)	4 (0.100)	4/248	NT	9.6%	coding (926/948 nt)	lip	lipase
	?	NC_002947	= 5520889	39 (0.960)					coding (897/948 nt)	lip	lipase
*	?	NC_002947	= 5531499	36 (0.850)	3 (0.080)	3/244	NT	7.4%	coding (774/1308 nt)	braE	high‑affinity branched‑chain amino acid ABC transporter permease BraE
	?	NC_002947	= 5531550	41 (1.030)					coding (723/1308 nt)	braE	high‑affinity branched‑chain amino acid ABC transporter permease BraE
*	?	NC_002947	= 5586657	33 (0.780)	4 (0.100)	4/248	NT	9.0%	coding (629/1026 nt)	PP_4914	phytase‑like protein
	?	NC_002947	= 5586716	49 (1.210)					coding (570/1026 nt)	PP_4914	phytase‑like protein
*	?	NC_002947	= 5593775	34 (0.810)	3 (0.080)	3/242	NT	8.6%	coding (279/1284 nt)	PP_4921	NCS1 family transporter
	?	NC_002947	= 5593800	32 (0.810)					coding (254/1284 nt)	PP_4921	NCS1 family transporter
*	?	NC_002947	5611557 =	56 (1.330)	3 (0.080)	3/240	NT	5.3%	coding (551/1176 nt)	PP_4931	hypothetical protein
	?	NC_002947	5611609 =	56 (1.430)					coding (603/1176 nt)	PP_4931	hypothetical protein
*	?	NC_002947	5630729 =	38 (0.900)	3 (0.070)	3/250	NT	7.8%	coding (259/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	NC_002947	5630773 =	34 (0.830)					coding (303/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
*	?	NC_002947	= 5639859	48 (1.140)	4 (0.100)	4/246	NT	7.8%	coding (951/1320 nt)	PP_4950	hypothetical protein
	?	NC_002947	= 5639891	49 (1.220)					coding (983/1320 nt)	PP_4950	hypothetical protein
*	?	NC_002947	5678672 =	52 (1.230)	3 (0.070)	3/250	NT	5.5%	coding (298/1407 nt)	bioA	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
	?	NC_002947	5678717 =	53 (1.300)					coding (343/1407 nt)	bioA	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
*	?	NC_002947	5760360 =	45 (1.070)	4 (0.100)	4/246	NT	9.6%	coding (382/414 nt)	PP_5055	Sulfurtransferase
	?	NC_002947	5760404 =	32 (0.800)					coding (338/414 nt)	PP_5055	Sulfurtransferase
*	?	NC_002947	5786472 =	61 (1.450)	3 (0.090)	3/210	NT	6.2%	intergenic (+15/‑116)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	5786557 =	41 (1.190)					intergenic (+100/‑31)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	5792613 =	44 (1.040)	4 (0.100)	4/240	NT	9.2%	coding (718/1419 nt)	gltD	glutamate synthase subunit beta
	?	NC_002947	5792679 =	38 (0.970)					coding (652/1419 nt)	gltD	glutamate synthase subunit beta
*	?	NC_002947	= 5813248	54 (1.280)	4 (0.100)	4/242	NT	7.4%	coding (169/1737 nt)	argS	arginine‑‑tRNA ligase
	?	NC_002947	= 5813287	50 (1.260)					coding (208/1737 nt)	argS	arginine‑‑tRNA ligase
*	?	NC_002947	5817709 =	57 (1.350)	4 (0.100)	3/238	NT	7.1%	coding (245/1011 nt)	pilT	twitching motility protein
	?	NC_002947	5817767 =	52 (1.340)					coding (187/1011 nt)	pilT	twitching motility protein
*	?	NC_002947	5830989 =	45 (1.070)	3 (0.080)	3/242	NT	8.1%	coding (1155/1485 nt)	ftsY	signal recognition particle protein translocation receptor GTPase
	?	NC_002947	5831052 =	26 (0.660)					coding (1092/1485 nt)	ftsY	signal recognition particle protein translocation receptor GTPase
*	?	NC_002947	5867208 =	39 (0.920)	5 (0.120)	5/246	NT	11.9%	coding (498/972 nt)	thyA	thymidylate synthase
	?	NC_002947	5867248 =	37 (0.920)					coding (458/972 nt)	thyA	thymidylate synthase
*	?	NC_002947	= 5870289	17 (0.400)	4 (0.120)	4/200	NT	18.5%	intergenic (+50/+84)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	= 5870324	22 (0.670)					intergenic (+85/+49)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	= 5884743	63 (1.490)	5 (0.120)	4/246	NT	7.8%	coding (396/624 nt)	PP_5159	hypothetical protein
	?	NC_002947	= 5884769	58 (1.440)					coding (370/624 nt)	PP_5159	hypothetical protein
*	?	NC_002947	= 5888103	45 (1.070)	3 (0.070)	3/248	NT	7.0%	coding (157/567 nt)	maa	acetyltransferase
	?	NC_002947	= 5888130	37 (0.910)					coding (130/567 nt)	maa	acetyltransferase
*	?	NC_002947	= 5914184	22 (0.520)	4 (0.120)	4/202	NT	16.3%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5914224	24 (0.730)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	5935863 =	62 (1.470)	7 (0.170)	6/248	NT	10.4%	coding (42/297 nt)	PP_5204	hypothetical protein
	?	NC_002947	5935903 =	61 (1.500)					coding (2/297 nt)	PP_5204	hypothetical protein
*	?	NC_002947	= 5936819	55 (1.300)	3 (0.070)	3/250	NT	5.2%	coding (336/960 nt)	yhiI	translation‑like protein
	?	NC_002947	= 5936854	57 (1.390)					coding (371/960 nt)	yhiI	translation‑like protein
*	?	NC_002947	= 5939964	63 (1.490)	6 (0.150)	6/250	NT	8.6%	coding (2525/2721 nt)	rbbA	ribosome‑associated ATPase
	?	NC_002947	= 5939985	67 (1.640)					coding (2546/2721 nt)	rbbA	ribosome‑associated ATPase
*	?	NC_002947	5958580 =	44 (1.040)	6 (0.150)	6/248	NT	14.2%	coding (1984/2856 nt)	cyaA	adenylate cyclase
	?	NC_002947	5958605 =	30 (0.740)					coding (2009/2856 nt)	cyaA	adenylate cyclase
*	?	NC_002947	5965001 =	63 (1.490)	4 (0.100)	4/244	NT	6.1%	coding (195/696 nt)	had	(S)‑2‑haloacid dehalogenase
	?	NC_002947	5965077 =	63 (1.580)					coding (271/696 nt)	had	(S)‑2‑haloacid dehalogenase
*	?	NC_002947	5969631 =	54 (1.280)	3 (0.070)	3/250	NT	5.5%	coding (1663/2124 nt)	PP_5236	hypothetical protein
	?	NC_002947	5969699 =	50 (1.220)					coding (1595/2124 nt)	PP_5236	hypothetical protein
*	?	NC_002947	= 5977420	53 (1.260)	4 (0.100)	3/244	NT	7.4%	coding (1221/1491 nt)	yifB	ATP‑dependent chelatase
	?	NC_002947	= 5977454	50 (1.250)					coding (1255/1491 nt)	yifB	ATP‑dependent chelatase
*	?	NC_002947	= 6000932	25 (0.590)	4 (0.120)	4/198	NT	15.0%	intergenic (+39/+70)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	= 6000966	26 (0.800)					intergenic (+73/+36)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
*	?	NC_002947	= 6006760	48 (1.140)	4 (0.100)	4/248	NT	8.2%	coding (798/927 nt)	PP_5261	LysR family transcriptional regulator
	?	NC_002947	= 6006781	43 (1.060)					coding (777/927 nt)	PP_5261	LysR family transcriptional regulator
*	?	NC_002947	6017044 =	48 (1.140)	3 (0.080)	3/242	NT	6.8%	coding (290/423 nt)	PP_5267	cytochrome c5
	?	NC_002947	6017093 =	37 (0.930)					coding (241/423 nt)	PP_5267	cytochrome c5
*	?	NC_002947	= 6040029	29 (0.690)	4 (0.100)	4/244	NT	11.4%	coding (34/780 nt)	PP_5292	catabolite repression control protein
	?	NC_002947	= 6040072	35 (0.880)					coding (77/780 nt)	PP_5292	catabolite repression control protein
*	?	NC_002947	= 6050074	38 (0.900)	3 (0.070)	3/250	NT	7.9%	coding (936/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase
	?	NC_002947	= 6050143	33 (0.810)					coding (1005/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase
*	?	NC_002947	= 6062972	48 (1.140)	6 (0.150)	4/248	NT	11.1%	intergenic (‑85/‑140)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase
	?	NC_002947	= 6063004	50 (1.230)					intergenic (‑117/‑108)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase
*	?	NC_002947	6071622 =	32 (0.760)	5 (0.120)	5/246	NT	13.4%	intergenic (‑45/+57)	phoU/pstB‑II	phosphate transport‑associated protein/phosphate ABC transporter ATP‑binding protein
	?	NC_002947	6071671 =	34 (0.840)					intergenic (‑94/+8)	phoU/pstB‑II	phosphate transport‑associated protein/phosphate ABC transporter ATP‑binding protein
*	?	NC_002947	= 6080876	36 (0.850)	3 (0.080)	3/240	NT	8.5%	coding (820/897 nt)	PP_5332	hypothetical protein
	?	NC_002947	= 6080914	31 (0.790)					coding (858/897 nt)	PP_5332	hypothetical protein
*	?	NC_002947	= 6112131	44 (1.040)	3 (0.080)	3/238	NT	6.8%	intergenic (+127/+86)	PP_5362/PP_5363	hypothetical protein/hypothetical protein
	?	NC_002947	= 6112186	42 (1.080)					intergenic (+182/+31)	PP_5362/PP_5363	hypothetical protein/hypothetical protein
*	?	NC_002947	= 6138046	55 (1.300)	4 (0.100)	4/250	NT	7.8%	coding (501/1254 nt)	czcC	CzcC family metal RND transporter outer membrane protein
	?	NC_002947	= 6138093	41 (1.000)					coding (548/1254 nt)	czcC	CzcC family metal RND transporter outer membrane protein
*	?	NC_002947	6172767 =	45 (1.070)	4 (0.100)	4/236	NT	7.3%	coding (315/777 nt)	PP_5410	DeoR family transcriptional regulator
	?	NC_002947	6172834 =	61 (1.580)					coding (248/777 nt)	PP_5410	DeoR family transcriptional regulator