breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	3,081	G→C	6.2%	A434G (GCC→GGC)	trmF ←	tRNA uridine 5‑carboxymethylaminomethyl modification protein
RA	4,977	C→T	8.9%	intergenic (‑596/+35)	trmF ← / ← trmE	tRNA uridine 5‑carboxymethylaminomethyl modification protein/GTPase
RA	4,980	A→G	8.4%	intergenic (‑599/+32)	trmF ← / ← trmE	tRNA uridine 5‑carboxymethylaminomethyl modification protein/GTPase
RA	13,279	A→G	6.6%	H353R (CAC→CGC)	recF →	DNA replication/repair protein
RA	27,581	C→T	7.6%	intergenic (‑428/+18)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	27,584	A→G	7.8%	intergenic (‑431/+15)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	33,975	C→T	6.2%	R138C (CGT→TGT)	czrSA →	metal‑sensor histidine kinase
RA	36,172	A→T	6.0%	intergenic (+57/+26)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,174	A→C	5.2%	intergenic (+59/+24)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	48,872	T→G	8.2%	D168A (GAC→GCC)	czcA‑I ←	cation efflux system protein
RA	58,435	G→C	11.9%	intergenic (‑346/+342)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,437	T→A	12.2%	intergenic (‑348/+340)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,439	G→C	12.2%	intergenic (‑350/+338)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,747	T→A	14.6%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	14.8%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	86,053	A→T	5.8%	L222Q (CTG→CAG)	PP_0075 ←	choline sulfate transporter
RA	86,056	A→T	5.8%	L221Q (CTG→CAG)	PP_0075 ←	choline sulfate transporter
RA	86,060	A→G	5.8%	W220R (TGG→CGG)	PP_0075 ←	choline sulfate transporter
RA	100,113	C→A	6.8%	G99V (GGG→GTG)	PP_0094 ←	5'‑nucleotidase
RA	115,916	T→C	6.3%	I73I (ATT→ATC)	PP_0110 →	CyoE‑like protoheme IX farnesyltransferase
RA	115,917	G→A	9.5%	D74N (GAT→AAT)	PP_0110 →	CyoE‑like protoheme IX farnesyltransferase
RA	117,418	T→G	7.4%	K223Q (AAG→CAG)	metQ ←	methionine ABC transporter substrate‑binding protein
RA	124,883	G→C	5.6%	A78G (GCG→GGG)	PP_0119 ←	zinc uptake regulation protein Zur
RA	124,890	A→G	5.3%	Y76H (TAC→CAC)	PP_0119 ←	zinc uptake regulation protein Zur
RA	152,157	A→T	14.8%	intergenic (‑51/+43)	PP_0143 ← / ← PP_0144	membrane protein/insulinase family metalloprotease
RA	159,376	T→A	5.9%	Q338L (CAA→CTA)	PP_0149 ←	hypothetical protein
RA	160,310	C→T	5.9%	E27K (GAG→AAG)	PP_0149 ←	hypothetical protein
RA	160,311	A→G	5.9%	L26L (CTT→CTC)	PP_0149 ←	hypothetical protein
RA	160,513	A→C	5.6%	F65V (TTC→GTC)	PP_0150 ←	hypothetical protein
RA	160,517	T→G	5.8%	A63A (GCA→GCC) ‡	PP_0150 ←	hypothetical protein
RA	160,518	G→C	5.7%	A63G (GCA→GGA) ‡	PP_0150 ←	hypothetical protein
RA	162,281	A→T	9.9%	intergenic (‑315/+59)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,282	A→T	9.9%	intergenic (‑316/+58)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,292	G→T	9.6%	intergenic (‑326/+48)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,293	A→G	9.6%	intergenic (‑327/+47)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	170,841	A→C	11.8%	intergenic (+22/‑548)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	181,805	T→C	14.3%	intergenic (+19/‑87)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,811	C→T	13.4%	intergenic (+25/‑81)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,812	A→G	13.4%	intergenic (+26/‑80)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,818	G→A	13.2%	intergenic (+32/‑74)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	182,034	G→A	10.7%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	10.7%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	10.5%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	184,277	G→T	9.1%	L96M (CTG→ATG)	PP_0160 ←	ferrioxamine receptor
RA	184,281	G→A	8.9%	N94N (AAC→AAT) ‡	PP_0160 ←	ferrioxamine receptor
RA	184,282	T→A	9.6%	N94I (AAC→ATC) ‡	PP_0160 ←	ferrioxamine receptor
RA	184,283	T→C	9.6%	N94D (AAC→GAC) ‡	PP_0160 ←	ferrioxamine receptor
RA	184,287	A→C	11.1%	H92Q (CAT→CAG)	PP_0160 ←	ferrioxamine receptor
RA	195,559	C→A	33.5%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	15.9%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	16.2%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	44.4%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	8.2%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	19.8%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	24.1%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	23.3%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	26.1%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	10.1%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	21.7%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	7.8%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	15.5%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	6.2%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	12.2%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	17.0%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	19.0%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	9.4%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	7.4%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	201,652	G→C	6.0%	V2386V (GTG→GTC)	PP_0168 →	putative surface adhesion protein
RA	205,404	T→A	7.1%	L3637Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	206,064	T→A	5.8%	L3857Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	210,565	C→G	9.3%	V5357V (GTC→GTG)	PP_0168 →	putative surface adhesion protein
RA	244,423	G→A	7.1%	A33A (GCG→GCA)	algP →	transcriptional regulator AlgP
RA	249,079	C→T	7.0%	intergenic (+27/+22)	PP_0198 → / ← qmcA	putative transporter/membrane protease family protein
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	287,067	G→C	5.1%	P19R (CCG→CGG) ‡	tauB‑II ←	taurine ABC transporter ATP‑binding protein
RA	287,068	G→C	6.0%	P19A (CCG→GCG) ‡	tauB‑II ←	taurine ABC transporter ATP‑binding protein
RA	292,190	C→T	6.8%	A191V (GCC→GTC)	ssuA →	aliphatic sulfonatesABC transporter substrate‑binding protein
RA	302,401	G→C	7.7%	S189T (AGT→ACT)	envZ →	osmolarity sensor protein EnvZ
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	308,738	C→T	9.4%	intergenic (+1753/‑116)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	308,739	A→G	9.4%	intergenic (+1754/‑115)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	318,967	G→A	7.8%	R259C (CGC→TGC)	PP_0264 ←	sensor histidine kinase
RA	318,970	T→C	7.6%	T258A (ACC→GCC)	PP_0264 ←	sensor histidine kinase
RA	318,975	G→A	7.8%	T256I (ACC→ATC)	PP_0264 ←	sensor histidine kinase
RA	318,977	G→C	7.9%	I255M (ATC→ATG) ‡	PP_0264 ←	sensor histidine kinase
RA	318,979	T→C	7.9%	I255V (ATC→GTC) ‡	PP_0264 ←	sensor histidine kinase
RA	322,133	G→A	14.5%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	326,065	C→A	7.2%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	326,068	T→G	7.7%	A555A (GCA→GCC)	PP_0269 ←	glutamate synthase large subunit
RA	335,804	T→G	6.8%	noncoding (31/89 nt)	PP_mr04 →	C4 ncRNA
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	336,288	T→A	19.7%	intergenic (+136/+257)	PP_0278 → / ← PP_0279	hypothetical protein/hypothetical protein
RA	337,809	A→G	11.7%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,816:1	+A	12.5%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819	A→C	13.7%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	C→G	12.1%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	G→T	9.3%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,827	Δ1 bp	10.2%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,836	C→T	10.4%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	341,306	G→A	7.2%	intergenic (‑200/‑178)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	343,608	G→C	5.9%	intergenic (‑164/‑76)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	344,032	A→G	8.1%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,041	Δ1 bp	7.7%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	7.7%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	354,867	G→C	9.7%	T102R (ACG→AGG)	cbcW ←	choline/betaine/carnitine ABC transporter permease
RA	354,873	A→C	7.7%	F100C (TTC→TGC)	cbcW ←	choline/betaine/carnitine ABC transporter permease
RA	354,878	G→C	7.4%	V98V (GTC→GTG)	cbcW ←	choline/betaine/carnitine ABC transporter permease
RA	354,883	G→T	7.5%	Q97K (CAG→AAG)	cbcW ←	choline/betaine/carnitine ABC transporter permease
RA	357,266	A→C	7.3%	E204A (GAG→GCG)	tdcG‑I →	L‑serine dehydratase
RA	357,270	A→T	7.6%	E205D (GAA→GAT)	tdcG‑I →	L‑serine dehydratase
RA	357,272	A→T	7.4%	D206V (GAC→GTC)	tdcG‑I →	L‑serine dehydratase
RA	357,274	A→T	7.2%	I207F (ATC→TTC)	tdcG‑I →	L‑serine dehydratase
RA	357,278	G→T	7.4%	R208L (CGC→CTC)	tdcG‑I →	L‑serine dehydratase
RA	358,085	A→G	10.9%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,087	C→T	11.1%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	T→C	12.2%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,091	G→A	13.1%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	A→G	12.3%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,096	C→T	11.7%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	362,956	C→T	7.5%	G176D (GGC→GAC)	lcdH ←	L‑carnitine dehydrogenase
RA	395,846	C→A	13.8%	intergenic (+28/+176)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,847	A→T	13.4%	intergenic (+29/+175)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,848	T→G	13.7%	intergenic (+30/+174)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	396,848	Δ1 bp	6.4%	coding (98/924 nt)	PP_0329 ←	hypothetical protein
RA	396,855	G→T	6.3%	R31R (CGG→AGG)	PP_0329 ←	hypothetical protein
RA	396,856	C→G	7.5%	L30L (CTG→CTC) ‡	PP_0329 ←	hypothetical protein
RA	396,857	A→C	7.4%	L30R (CTG→CGG) ‡	PP_0329 ←	hypothetical protein
RA	396,862:1	+G	6.1%	coding (84/924 nt)	PP_0329 ←	hypothetical protein
RA	417,614	C→G	5.5%	A68G (GCC→GGC)	waaP →	lipopolysaccharide core heptose (I) kinase
RA	417,618	G→C	5.5%	K69N (AAG→AAC)	waaP →	lipopolysaccharide core heptose (I) kinase
RA	417,622	C→G	5.2%	P71A (CCG→GCG)	waaP →	lipopolysaccharide core heptose (I) kinase
RA	418,295	C→G	6.7%	L26L (CTC→CTG)	PP_0345 →	heptose kinase WapP
RA	418,296	C→G	6.7%	Q27E (CAG→GAG)	PP_0345 →	heptose kinase WapP
RA	425,348	A→C	11.2%	intergenic (‑39/+18)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	425,349	A→T	11.3%	intergenic (‑40/+17)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	425,350	G→T	11.8%	intergenic (‑41/+16)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	448,493	A→G	8.6%	T358A (ACC→GCC)	PP_0369 →	diguanylate cyclase
RA	448,523	Δ1 bp	7.7%	coding (1102/1284 nt)	PP_0369 →	diguanylate cyclase
RA	448,800	C→T	7.1%	intergenic (+95/‑30)	PP_0369 → / → PP_0370	diguanylate cyclase/acyl‑CoA dehydrogenase family protein
RA	456,864	C→T	6.4%	R296H (CGT→CAT)	pqqE ←	coenzyme PQQ synthesis protein E
RA	458,674	C→T	7.6%	G36R (GGG→AGG)	pqqC ←	pyrroloquinoline‑quinone synthase
RA	464,320	G→C	7.8%	H259Q (CAC→CAG) ‡	davB ←	lysine 2‑monooxygenase
RA	464,321	T→A	7.6%	H259L (CAC→CTC) ‡	davB ←	lysine 2‑monooxygenase
RA	464,322	G→C	7.7%	H259D (CAC→GAC) ‡	davB ←	lysine 2‑monooxygenase
RA	467,098	A→G	7.0%	intergenic (‑31/+22)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	467,101	C→T	7.3%	intergenic (‑34/+19)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	503,825	Δ1 bp	9.1%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,832	A→T	8.7%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,837:1	+C	8.7%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	510,299	C→T	10.0%	P107S (CCG→TCG)	trpD →	anthranilate phosphoribosyltransferase
RA	514,920	A→C	12.0%	I55S (ATC→AGC)	PP_0426 ←	membrane protein
RA	514,922	C→G	9.6%	L54L (CTG→CTC) ‡	PP_0426 ←	membrane protein
RA	514,924	G→T	10.2%	L54M (CTG→ATG) ‡	PP_0426 ←	membrane protein
RA	515,823	T→A	5.8%	N108I (AAC→ATC)	hinT ←	aminoacyl‑adenylate hydrolase/purine nucleoside phosphoramidase
RA	515,825	C→G	5.8%	M107I (ATG→ATC) ‡	hinT ←	aminoacyl‑adenylate hydrolase/purine nucleoside phosphoramidase
RA	515,827	T→A	5.5%	M107L (ATG→TTG) ‡	hinT ←	aminoacyl‑adenylate hydrolase/purine nucleoside phosphoramidase
RA	516,279	A→T	8.1%	L238Q (CTG→CAG)	PP_0429 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	516,282	A→T	8.1%	L237Q (CTG→CAG)	PP_0429 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	517,460	G→C	6.4%	L186V (CTG→GTG)	PP_0430 ←	hypothetical protein
RA	537,579	C→G	5.6%	intergenic (+109/‑44)	PP_mr07 → / → rpoB	P26 ncRNA/DNA‑directed RNA polymerase subunit beta
RA	541,437	A→G	10.6%	Q1272R (CAG→CGG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	541,440	C→T	10.2%	P1273L (CCG→CTG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	548,803	A→C	9.5%	E551D (GAA→GAC)	fusA →	elongation factor G 1
RA	548,804	G→T	9.2%	V552F (GTC→TTC)	fusA →	elongation factor G 1
RA	550,549	C→G	10.8%	intergenic (+30/‑112)	tufB → / → rpsJ	elongation factor Tu‑B/30S ribosomal protein S10
RA	554,861	Δ1 bp	5.6%	coding (75/414 nt)	rplP →	50S ribosomal protein L16
RA	557,332	Δ1 bp	10.9%	intergenic (+75/‑134)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	557,336:1	+A	11.4%	intergenic (+79/‑130)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	559,579	G→T	8.7%	G43V (GGT→GTT)	rplO →	50S ribosomal protein L15
RA	560,276	A→G	6.3%	Q130Q (CAA→CAG)	secY →	protein translocase subunit SecY
RA	560,281	T→A	8.2%	I132N (ATT→AAT)	secY →	protein translocase subunit SecY
RA	584,235	T→A	8.8%	intergenic (+76/+31)	PP_t75 → / ← ansA	tRNA‑Sec/type 1 L‑asparaginase
RA	584,236	T→A	9.4%	intergenic (+77/+30)	PP_t75 → / ← ansA	tRNA‑Sec/type 1 L‑asparaginase
RA	587,042	Δ1 bp	8.9%	coding (94/810 nt)	PP_0497 →	Cro/CI family transcriptional regulator
RA	589,213	G→C	6.3%	intergenic (‑568/‑664)	PP_0498 ← / → PP_0500	hypothetical protein/dTDP‑4‑rhamnose reductase‑like protein
RA	589,214	G→C	7.8%	intergenic (‑569/‑663)	PP_0498 ← / → PP_0500	hypothetical protein/dTDP‑4‑rhamnose reductase‑like protein
RA	589,217	G→A	6.0%	intergenic (‑572/‑660)	PP_0498 ← / → PP_0500	hypothetical protein/dTDP‑4‑rhamnose reductase‑like protein
RA	591,703	C→G	14.2%	intergenic (+17/+14)	PP_0501 → / ← PP_0502	NAD‑dependent epimerase/dehydratase family protein/hypothetical protein
RA	602,117	C→T	6.3%	H97Y (CAC→TAC)	ribE →	riboflavin synthase
RA	603,648	T→G	8.7%	intergenic (+44/‑48)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	603,658	T→A	12.3%	intergenic (+54/‑38)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	603,660	G→A	10.6%	intergenic (+56/‑36)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	603,661	T→C	11.1%	intergenic (+57/‑35)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	603,663	T→A	11.1%	intergenic (+59/‑33)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	618,346	C→T	5.6%	V75M (GTG→ATG)	PP_0532 ←	hypothetical protein
RA	618,351	T→G	5.6%	Y73S (TAC→TCC)	PP_0532 ←	hypothetical protein
RA	618,353	C→A	5.6%	G72G (GGG→GGT)	PP_0532 ←	hypothetical protein
RA	668,092	A→T	8.7%	intergenic (+56/+96)	yfhM → / ← PP_0571	lipoprotein/membrane protein
RA	668,093	A→T	8.7%	intergenic (+57/+95)	yfhM → / ← PP_0571	lipoprotein/membrane protein
RA	670,785	C→T	6.1%	Q743* (CAG→TAG) ‡	pbpC →	peptidoglycan glycosyltransferase
RA	670,786	A→G	6.1%	Q743R (CAG→CGG) ‡	pbpC →	peptidoglycan glycosyltransferase
RA	675,587	A→T	12.7%	C38S (TGC→AGC)	PP_0577 ←	hypothetical protein
RA	675,589	C→G	12.2%	G37A (GGC→GCC)	PP_0577 ←	hypothetical protein
RA	675,591	A→T	11.6%	A36A (GCT→GCA)	PP_0577 ←	hypothetical protein
RA	697,203	T→C	7.4%	intergenic (+130/‑621)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,722	A→G	46.7%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	17.6%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	17.6%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	17.6%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	706,345	G→A	8.9%	A608T (GCA→ACA)	PP_0599 →	paraquat‑inducible protein B
RA	710,118	T→G	7.6%	L288R (CTG→CGG)	ribF →	bifunctional riboflavin kinase/FMN adenylyltransferase
RA	715,009:1	+T	10.3%	intergenic (+75/+2)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	715,016	Δ1 bp	10.5%	coding (478/483 nt)	PP_0607 ←	type IV pili biogenesis protein FimT
RA	718,457	C→G	9.2%	intergenic (+27/+50)	thiO → / ← PP_0613	FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein
RA	718,458	T→C	10.6%	intergenic (+28/+49)	thiO → / ← PP_0613	FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein
RA	718,459	A→G	9.9%	intergenic (+29/+48)	thiO → / ← PP_0613	FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein
RA	718,460	C→T	10.7%	intergenic (+30/+47)	thiO → / ← PP_0613	FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein
RA	718,461	G→A	10.5%	intergenic (+31/+46)	thiO → / ← PP_0613	FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein
RA	722,423	A→G	8.6%	D109D (GAT→GAC) ‡	PP_0616 ←	ABC transporter ATP‑binding protein
RA	722,425	C→G	8.6%	D109H (GAT→CAT) ‡	PP_0616 ←	ABC transporter ATP‑binding protein
RA	722,427	C→T	9.8%	R108H (CGT→CAT)	PP_0616 ←	ABC transporter ATP‑binding protein
RA	727,315	C→T	9.3%	W6* (TGG→TAG) ‡	PP_0621 ←	hypothetical protein
RA	727,316	A→T	9.2%	W6R (TGG→AGG) ‡	PP_0621 ←	hypothetical protein
RA	727,317	A→G	9.4%	P5P (CCT→CCC)	PP_0621 ←	hypothetical protein
RA	733,645	A→T	13.1%	intergenic (+19/‑28)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,646	A→T	13.0%	intergenic (+20/‑27)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,647	A→T	13.1%	intergenic (+21/‑26)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,848	G→A	9.7%	intergenic (+18/+173)	PP_t11 → / ← ndh	tRNA‑Lys/NADH dehydrogenase
RA	733,849	C→T	8.5%	intergenic (+19/+172)	PP_t11 → / ← ndh	tRNA‑Lys/NADH dehydrogenase
RA	733,850	A→G	8.7%	intergenic (+20/+171)	PP_t11 → / ← ndh	tRNA‑Lys/NADH dehydrogenase
RA	733,851	T→C	8.8%	intergenic (+21/+170)	PP_t11 → / ← ndh	tRNA‑Lys/NADH dehydrogenase
RA	744,162	C→T	8.7%	G58G (GGG→GGA)	PP_0636 ←	cold shock DNA‑binding domain‑containing protein
RA	766,609	A→T	8.9%	Q34L (CAG→CTG)	metB →	cystathionine gamma‑synthase
RA	766,614	C→A	9.6%	P36T (CCG→ACG)	metB →	cystathionine gamma‑synthase
RA	766,621	T→G	9.0%	V38G (GTG→GGG)	metB →	cystathionine gamma‑synthase
RA	766,626	A→T	9.8%	S40C (AGC→TGC)	metB →	cystathionine gamma‑synthase
RA	783,239	T→C	6.3%	D896G (GAC→GGC)	PP_0672 ←	sensory box protein
RA	783,242	C→G	6.4%	G895A (GGC→GCC)	PP_0672 ←	sensory box protein
RA	783,245	G→A	6.4%	A894V (GCC→GTC)	PP_0672 ←	sensory box protein
RA	787,188	C→G	6.0%	A102A (GCC→GCG)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	787,189	C→G	6.0%	R103G (CGC→GGC)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	787,196	A→G	5.5%	D105G (GAC→GGC)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	796,815	T→A	6.4%	intergenic (+17/‑173)	PP_0681 → / → PP_0682	hypothetical protein/inner membrane protein
RA	796,816	T→A	6.5%	intergenic (+18/‑172)	PP_0681 → / → PP_0682	hypothetical protein/inner membrane protein
RA	796,817	T→A	6.4%	intergenic (+19/‑171)	PP_0681 → / → PP_0682	hypothetical protein/inner membrane protein
RA	797,509	G→A	7.1%	intergenic (+33/‑44)	PP_0682 → / → PP_0683	inner membrane protein/hypothetical protein
RA	797,982	T→G	11.3%	intergenic (+40/‑46)	PP_0683 → / → fklB‑I	hypothetical protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	797,983	T→A	11.3%	intergenic (+41/‑45)	PP_0683 → / → fklB‑I	hypothetical protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	797,986	T→A	11.7%	intergenic (+44/‑42)	PP_0683 → / → fklB‑I	hypothetical protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	797,987	C→A	11.3%	intergenic (+45/‑41)	PP_0683 → / → fklB‑I	hypothetical protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	802,770	T→C	7.9%	intergenic (+28/‑58)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,771	C→A	7.8%	intergenic (+29/‑57)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,772	T→G	8.0%	intergenic (+30/‑56)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,773	G→A	7.9%	intergenic (+31/‑55)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	803,900	G→T	9.1%	S358I (AGC→ATC)	proB →	glutamate 5‑kinase
RA	850,991	C→G	5.3%	intergenic (‑574/‑231)	pcs ← / → hemA	phosphatidylcholine synthase/glutamyl‑tRNA reductase
RA	850,992	C→G	5.3%	intergenic (‑575/‑230)	pcs ← / → hemA	phosphatidylcholine synthase/glutamyl‑tRNA reductase
RA	852,159	A→T	10.7%	Q313L (CAG→CTG)	hemA →	glutamyl‑tRNA reductase
RA	852,164	G→C	10.5%	A315P (GCG→CCG) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,165	C→G	10.4%	A315G (GCG→GGG) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,166	G→C	10.5%	A315A (GCG→GCC) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,171	A→T	10.3%	Q317L (CAG→CTG)	hemA →	glutamyl‑tRNA reductase
RA	871,185	A→T	5.6%	intergenic (+33/+42)	PP_0753 → / ← PP_0754	lipoprotein/hypothetical protein
RA	871,186	G→C	5.6%	intergenic (+34/+41)	PP_0753 → / ← PP_0754	lipoprotein/hypothetical protein
RA	871,187	T→A	5.6%	intergenic (+35/+40)	PP_0753 → / ← PP_0754	lipoprotein/hypothetical protein
RA	871,188	G→C	5.6%	intergenic (+36/+39)	PP_0753 → / ← PP_0754	lipoprotein/hypothetical protein
RA	871,189	A→T	5.6%	intergenic (+37/+38)	PP_0753 → / ← PP_0754	lipoprotein/hypothetical protein
RA	876,015	G→C	9.0%	noncoding (105/142 nt)	PP_mr65 ←	YybP‑YkoY
RA	876,018	G→C	7.8%	noncoding (102/142 nt)	PP_mr65 ←	YybP‑YkoY
RA	885,368	Δ1 bp	8.3%	coding (1279/2718 nt)	PP_0767 →	LuxR family transcriptional regulator
RA	885,372	C→G	7.8%	P428R (CCG→CGG)	PP_0767 →	LuxR family transcriptional regulator
RA	885,375:1	+T	7.9%	coding (1286/2718 nt)	PP_0767 →	LuxR family transcriptional regulator
RA	887,770	G→A	6.4%	R268R (CGG→CGA)	PP_0768 →	TPR domain‑containing response regulator
RA	887,772	A→T	6.6%	Q269L (CAG→CTG)	PP_0768 →	TPR domain‑containing response regulator
RA	887,774	T→C	6.4%	S270P (TCG→CCG)	PP_0768 →	TPR domain‑containing response regulator
RA	901,418	G→A	8.2%	intergenic (‑137/‑194)	cysZ ← / → trxB	sulfate transport protein CysZ/thioredoxin reductase
RA	904,643	T→G	6.0%	V301G (GTG→GGG)	PP_0788 →	hypothetical protein
RA	925,237	G→C	6.1%	A463A (GCC→GCG)	PP_0805 ←	outer membrane efflux protein
RA	955,118	C→T	8.6%	intergenic (+72/‑241)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,149	A→G	17.5%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	17.2%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	15.3%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	17.5%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	C→T	15.2%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	968,875	G→T	17.0%	intergenic (‑308/+23)	PP_0831 ← / ← PP_t68	hypothetical protein/tRNA‑Leu
RA	968,878	A→C	18.6%	intergenic (‑311/+20)	PP_0831 ← / ← PP_t68	hypothetical protein/tRNA‑Leu
RA	980,637	T→G	6.2%	Y27D (TAT→GAT)	hscB →	DnaJ‑like molecular chaperone
RA	983,256	T→C	9.0%	V89V (GTT→GTC)	fdx →	ferredoxin
RA	991,554	G→A	7.2%	G59D (GGT→GAT)	der →	GTPase Der
RA	991,557	T→C	7.6%	I60T (ATC→ACC)	der →	GTPase Der
RA	1,011,988	C→T	7.8%	P134S (CCC→TCC)	prfC →	peptide chain release factor 3
RA	1,013,228	A→T	9.1%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,234	C→A	10.0%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,235	A→T	9.9%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,241	G→C	11.3%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	9.8%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	11.4%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	9.4%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	11.9%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,015,332	G→A	9.5%	A303A (GCC→GCT)	PP_0875 ←	hypothetical protein
RA	1,033,803	T→A	10.1%	D141E (GAT→GAA)	PP_0891 →	hypothetical protein
RA	1,033,808	G→C	8.8%	R143P (CGG→CCG)	PP_0891 →	hypothetical protein
RA	1,033,813	T→A	8.9%	F145I (TTC→ATC)	PP_0891 →	hypothetical protein
RA	1,056,910	G→C	9.1%	L388V (CTC→GTC)	PP_0914 ←	GGDEF domain‑containing protein
RA	1,056,999	T→C	8.0%	E358G (GAA→GGA)	PP_0914 ←	GGDEF domain‑containing protein
RA	1,060,884	C→T	6.5%	S30S (AGC→AGT)	PP_0918 →	3‑beta hydroxysteroid dehydrogenase/isomerase family protein
RA	1,068,520	Δ1 bp	9.4%	coding (686/948 nt)	PP_0926 →	membrane protein
RA	1,068,527:1	+G	7.9%	coding (693/948 nt)	PP_0926 →	membrane protein
RA	1,070,233	T→C	6.5%	intergenic (+33/+109)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,238	G→A	6.8%	intergenic (+38/+104)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,246:1	+G	93.0%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,246:2	+A	93.0%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,260	G→C	25.4%	intergenic (+60/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,263	G→C	25.3%	intergenic (+63/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,076,738	G→C	11.3%	Q39H (CAG→CAC)	mreC →	cell shape‑determining protein MreC
RA	1,076,740	G→T	11.3%	R40L (CGT→CTT)	mreC →	cell shape‑determining protein MreC
RA	1,076,745	T→A	10.4%	W42R (TGG→AGG)	mreC →	cell shape‑determining protein MreC
RA	1,076,750	A→C	10.4%	Q43H (CAA→CAC)	mreC →	cell shape‑determining protein MreC
RA	1,076,752	G→C	11.6%	G44A (GGT→GCT)	mreC →	cell shape‑determining protein MreC
RA	1,088,659	C→G	6.5%	intergenic (+155/‑99)	pmbA → / → PP_0943	regulatory protease/hypothetical protein
RA	1,088,661	T→G	6.6%	intergenic (+157/‑97)	pmbA → / → PP_0943	regulatory protease/hypothetical protein
RA	1,088,662	C→A	6.7%	intergenic (+158/‑96)	pmbA → / → PP_0943	regulatory protease/hypothetical protein
RA	1,088,664	C→G	6.7%	intergenic (+160/‑94)	pmbA → / → PP_0943	regulatory protease/hypothetical protein
RA	1,098,126	C→T	6.0%	A151A (GCG→GCA)	kdsC ←	3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase
RA	1,120,469	T→A	8.9%	intergenic (‑211/‑91)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,120,470	T→A	9.2%	intergenic (‑212/‑90)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,120,471	T→A	9.5%	intergenic (‑213/‑89)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,120,902	T→A	8.5%	W115R (TGG→AGG)	PP_0982 →	YjgP/YjgQ family permease
RA	1,122,758	T→C	8.6%	intergenic (+29/+118)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,122,759	C→T	8.8%	intergenic (+30/+117)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,122,760	A→G	8.9%	intergenic (+31/+116)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,122,761	G→A	9.2%	intergenic (+32/+115)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,130,138	G→T	12.0%	intergenic (‑193/+111)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,130,139	C→G	12.2%	intergenic (‑194/+110)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,130,140	A→C	12.4%	intergenic (‑195/+109)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,161,005	G→C	6.8%	G273R (GGG→CGG)	gtsC →	mannose/glucose ABC transporter permease
RA	1,161,009	T→C	6.6%	L274P (CTG→CCG)	gtsC →	mannose/glucose ABC transporter permease
RA	1,161,013	G→A	6.9%	T275T (ACG→ACA)	gtsC →	mannose/glucose ABC transporter permease
RA	1,177,742	A→G	10.2%	T209A (ACG→GCG)	guaA →	glutamine‑hydrolyzing GMP synthase
RA	1,178,752	G→T	6.1%	intergenic (+57/+37)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,753	A→C	6.3%	intergenic (+58/+36)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,754	T→A	6.4%	intergenic (+59/+35)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,879	C→A	6.8%	V633V (GTG→GTT)	PP_1033 ←	sulfatase domain‑containing protein
RA	1,178,886	T→G	8.2%	Q631P (CAA→CCA)	PP_1033 ←	sulfatase domain‑containing protein
RA	1,178,888	G→A	8.6%	P630P (CCC→CCT)	PP_1033 ←	sulfatase domain‑containing protein
RA	1,193,928	T→A	5.6%	L23M (TTG→ATG) ‡	uxpA →	lipoprotein UxpA
RA	1,193,929	T→A	5.6%	L23* (TTG→TAG) ‡	uxpA →	lipoprotein UxpA
RA	1,202,854	A→C	6.1%	Q228P (CAG→CCG)	xcpY →	type II secretion pathway protein XcpY
RA	1,202,857	G→T	5.8%	R229L (CGG→CTG)	xcpY →	type II secretion pathway protein XcpY
RA	1,205,154	C→A	8.8%	E24* (GAG→TAG)	PP_1056 ←	iron‑chelator utilization protein
RA	1,209,547	C→G	6.7%	G52G (GGC→GGG)	ytnA →	amino acid permease YtnA
RA	1,226,707	T→A	8.9%	intergenic (‑217/‑114)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,226,710	T→A	8.7%	intergenic (‑220/‑111)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,227,391	C→T	6.8%	H191Y (CAC→TAC)	PP_1072 →	leucine‑rich repeat‑containing protein
RA	1,232,626	C→G	5.6%	V29V (GTG→GTC)	glpD ←	aerobic glycerol‑3‑phosphate dehydrogenase
RA	1,235,697	G→T	11.3%	A164A (GCC→GCA)	glpF ←	aquaglyceroporin
RA	1,235,703	C→T	10.9%	L162L (CTG→CTA) ‡	glpF ←	aquaglyceroporin
RA	1,235,704	A→C	10.9%	L162R (CTG→CGG) ‡	glpF ←	aquaglyceroporin
RA	1,235,705	G→T	10.9%	L162M (CTG→ATG) ‡	glpF ←	aquaglyceroporin
RA	1,235,706	A→G	11.3%	I161I (ATT→ATC)	glpF ←	aquaglyceroporin
RA	1,235,712	A→C	10.9%	T159T (ACT→ACG)	glpF ←	aquaglyceroporin
RA	1,237,656	C→T	12.8%	L151L (CTG→CTA) ‡	PP_1078 ←	ABC transporter ATP‑binding protein
RA	1,237,657	A→G	13.1%	L151P (CTG→CCG) ‡	PP_1078 ←	ABC transporter ATP‑binding protein
RA	1,237,665	G→A	14.9%	A148A (GCC→GCT)	PP_1078 ←	ABC transporter ATP‑binding protein
RA	1,238,669	A→T	7.5%	R119R (CGT→CGA)	argF ←	ornithine carbamoyltransferase
RA	1,239,100	G→T	8.7%	intergenic (‑75/‑300)	argF ← / → PP_1080	ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase
RA	1,239,103	A→C	11.1%	intergenic (‑78/‑297)	argF ← / → PP_1080	ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase
RA	1,239,115	C→T	8.9%	intergenic (‑90/‑285)	argF ← / → PP_1080	ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase
RA	1,239,168	G→T	7.6%	intergenic (‑143/‑232)	argF ← / → PP_1080	ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase
RA	1,241,519	G→A	6.5%	intergenic (+11/‑81)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,241,527	A→G	10.4%	intergenic (+19/‑73)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,241,529	G→C	10.4%	intergenic (+21/‑71)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,241,531	C→T	10.9%	intergenic (+23/‑69)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,249,749	A→T	7.8%	intergenic (+22/+49)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,249,751	C→G	7.8%	intergenic (+24/+47)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,250,523	A→G	7.3%	Y65Y (TAT→TAC)	nth ←	DNA glycosylase/apyrimidinic (AP) lyase
RA	1,255,850	C→T	9.3%	A64A (GCC→GCT)	mrp →	ATP‑dependent Fe‑S cluster transferase
RA	1,256,065	C→T	5.5%	A136V (GCC→GTC)	mrp →	ATP‑dependent Fe‑S cluster transferase
RA	1,261,542	T→A	6.7%	S365C (AGC→TGC)	PP_1104 ←	AotO‑related protein
RA	1,261,548	Δ1 bp	7.2%	coding (1087/1116 nt)	PP_1104 ←	AotO‑related protein
RA	1,277,323	C→A	7.1%	G16V (GGT→GTT)	PP_1116 ←	resolvase family site‑specific recombinase
RA	1,277,325	T→G	6.8%	Q15H (CAA→CAC)	PP_1116 ←	resolvase family site‑specific recombinase
RA	1,288,770	A→C	12.3%	S15R (AGC→CGC)	PP_1126 →	hydrolase
RA	1,288,774	C→A	12.7%	T16N (ACT→AAT) ‡	PP_1126 →	hydrolase
RA	1,288,775	T→G	12.8%	T16T (ACT→ACG) ‡	PP_1126 →	hydrolase
RA	1,288,779	G→T	13.2%	A18S (GCC→TCC)	PP_1126 →	hydrolase
RA	1,325,090	G→C	5.5%	intergenic (‑60/‑413)	yfdC ← / → PP_16SE	inner membrane protein/16S ribosomal RNA
RA	1,325,092	T→A	6.5%	intergenic (‑62/‑411)	yfdC ← / → PP_16SE	inner membrane protein/16S ribosomal RNA
RA	1,325,094	G→C	5.6%	intergenic (‑64/‑409)	yfdC ← / → PP_16SE	inner membrane protein/16S ribosomal RNA
RA	1,327,121	C→T	46.9%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,330,563	T→G	12.5%	intergenic (+94/‑213)	PP_5SE → / → PP_1157	5S ribosomal RNA/acetolactate synthase
RA	1,330,564	T→A	11.9%	intergenic (+95/‑212)	PP_5SE → / → PP_1157	5S ribosomal RNA/acetolactate synthase
RA	1,330,565	C→A	12.5%	intergenic (+96/‑211)	PP_5SE → / → PP_1157	5S ribosomal RNA/acetolactate synthase
RA	1,337,383	G→A	10.2%	G33G (GGG→GGA)	PP_1163 →	FAD‑binding oxidoreductase
RA	1,376,321	A→T	10.0%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,322	G→C	11.4%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,323	A→T	10.0%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,380,216	A→G	7.1%	V20A (GTG→GCG)	PP_1202 ←	phospholipids modification protein
RA	1,380,722	G→T	10.8%	intergenic (‑110/+25)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,380,723	T→A	10.8%	intergenic (‑111/+24)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,380,724	T→A	10.0%	intergenic (‑112/+23)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,380,725	A→C	9.8%	intergenic (‑113/+22)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,381,590	G→T	5.6%	S114I (AGC→ATC)	dinB →	DNA polymerase IV
RA	1,383,070	T→G	7.9%	E77D (GAA→GAC)	PP_1204 ←	lipoprotein
RA	1,403,590	G→A	16.2%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,591	T→C	17.0%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,416,099	C→A	7.5%	R157S (CGT→AGT) ‡	PP_1238 →	lipoprotein
RA	1,416,100	G→C	7.5%	R157P (CGT→CCT) ‡	PP_1238 →	lipoprotein
RA	1,416,101	T→G	7.1%	R157R (CGT→CGG) ‡	PP_1238 →	lipoprotein
RA	1,417,328	Δ1 bp	5.4%	coding (576/759 nt)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,417,332:1	+A	5.6%	coding (580/759 nt)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,418,249	G→T	10.1%	L236L (CTG→CTT)	purC →	phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	1,418,250	T→A	9.8%	*237K (TAA→AAA) ‡	purC →	phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	1,418,251	A→C	10.3%	*237S (TAA→TCA) ‡	purC →	phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	1,419,548:1	+C	100%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,420,554	C→T	7.1%	R12C (CGT→TGT)	PP_1245 →	hypothetical protein
RA	1,453,971	G→T	14.6%	S202I (AGC→ATC)	PP_1272 →	multidrug MFS transporter membrane fusion protein
RA	1,453,974	C→G	14.6%	A203G (GCC→GGC)	PP_1272 →	multidrug MFS transporter membrane fusion protein
RA	1,453,977	A→C	14.6%	D204A (GAT→GCT)	PP_1272 →	multidrug MFS transporter membrane fusion protein
RA	1,457,917	T→G	8.7%	V92V (GTT→GTG)	PP_1276 →	hypothetical protein
RA	1,458,117	T→G	7.9%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,119	A→T	7.8%	intergenic (+19/+21)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,121	C→A	8.0%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,460,539:1	+A	7.4%	coding (926/1167 nt)	algJ ←	alginate O‑acetylase AlgJ
RA	1,465,872	T→A	11.6%	K440M (AAG→ATG) ‡	algG ←	poly(beta‑D‑mannuronate) C5 epimerase
RA	1,465,873	T→A	11.6%	K440* (AAG→TAG) ‡	algG ←	poly(beta‑D‑mannuronate) C5 epimerase
RA	1,474,951	T→C	10.5%	intergenic (‑731/+70)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,474,952	T→A	10.5%	intergenic (‑732/+69)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,474,953	G→A	11.0%	intergenic (‑733/+68)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,495,650	G→A	8.7%	A27T (GCC→ACC)	mdeA →	methionine gamma‑lyase
RA	1,495,653	C→A	8.8%	L28M (CTG→ATG) ‡	mdeA →	methionine gamma‑lyase
RA	1,495,654	T→G	8.4%	L28R (CTG→CGG) ‡	mdeA →	methionine gamma‑lyase
RA	1,495,657	T→C	8.5%	V29A (GTG→GCG)	mdeA →	methionine gamma‑lyase
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,506,923	A→G	9.7%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,927	G→A	9.4%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,930	T→C	9.2%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,527,366	C→T	6.0%	R197R (CGC→CGT)	ftsQ →	cell division protein FtsQ
RA	1,529,131	A→T	6.6%	N52Y (AAC→TAC)	ftsZ →	cell division protein FtsZ
RA	1,533,126	G→T	9.3%	E379D (GAG→GAT)	secA →	protein translocase subunit SecA
RA	1,533,133	C→G	10.0%	H382D (CAC→GAC) ‡	secA →	protein translocase subunit SecA
RA	1,533,134	A→T	10.4%	H382L (CAC→CTC) ‡	secA →	protein translocase subunit SecA
RA	1,533,135	C→G	10.6%	H382Q (CAC→CAG) ‡	secA →	protein translocase subunit SecA
RA	1,534,902	G→A	8.7%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,544,499	C→G	21.0%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,563,519	G→A	7.7%	A421T (GCC→ACC)	PP_1372 →	hypothetical protein
RA	1,568,896	G→A	6.3%	intergenic (+33/‑294)	pcaK → / → pcaF‑I	4‑hydroxybenzoate transporter/beta‑ketoadipyl‑CoA thiolase
RA	1,578,008	G→C	5.6%	R80R (CGC→CGG) ‡	ttgC ←	efflux pump outer membrane protein TtgC
RA	1,578,009	C→T	5.8%	R80H (CGC→CAC) ‡	ttgC ←	efflux pump outer membrane protein TtgC
RA	1,578,012	A→G	5.8%	L79P (CTG→CCG) ‡	ttgC ←	efflux pump outer membrane protein TtgC
RA	1,578,013	G→C	6.6%	L79V (CTG→GTG) ‡	ttgC ←	efflux pump outer membrane protein TtgC
RA	1,591,965	G→C	11.9%	intergenic (‑72/‑131)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,982	C→A	22.7%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,987	T→G	21.7%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,605,848	G→T	8.3%	L135M (CTG→ATG)	PP_1407 ←	sulfate transporter
RA	1,616,805	G→A	7.1%	L152L (CTG→TTG)	PP_1416 ←	tricarboxylate transport protein TctA
RA	1,624,963	T→C	7.5%	V82A (GTG→GCG)	PP_1425 →	hypothetical protein
RA	1,625,207	G→T	10.9%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,625,208	A→C	15.5%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,631,093	T→C	10.4%	intergenic (+27/‑154)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,094	T→G	10.5%	intergenic (+28/‑153)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,095	C→A	11.8%	intergenic (+29/‑152)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,096	G→A	10.4%	intergenic (+30/‑151)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,637,325	A→T	7.8%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,647,572	Δ1 bp	100%	coding (1150/1335 nt)	oprB‑II ←	carbohydrate‑selective porin
RA	1,665,249	T→G	12.5%	I207L (ATC→CTC)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,250	G→C	12.1%	R206R (CGC→CGG)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,253	T→A	12.2%	E205D (GAA→GAT)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,258	T→A	12.0%	I204F (ATC→TTC)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,261	G→C	10.5%	P203A (CCG→GCG)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,262	C→A	10.8%	E202D (GAG→GAT)	PP_1459 ←	CBS domain‑containing protein
RA	1,677,629	A→G	9.1%	intergenic (+22/‑109)	thrC → / → PP_5471	threonine synthase/two‑component system response regulator
RA	1,677,630	G→C	9.1%	intergenic (+23/‑108)	thrC → / → PP_5471	threonine synthase/two‑component system response regulator
RA	1,677,631	C→T	9.0%	intergenic (+24/‑107)	thrC → / → PP_5471	threonine synthase/two‑component system response regulator
RA	1,694,350	A→T	7.0%	T106S (ACC→TCC)	wspC →	biofilm formation methyltransferase WspC
RA	1,702,766	A→G	8.5%	E373G (GAG→GGG)	lysS →	lysine‑‑tRNA ligase
RA	1,703,248	A→G	25.2%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	26.8%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	29.4%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,707,227	G→C	10.8%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,717,710	G→A	7.8%	A137T (GCG→ACG)	rsmJ →	ribosomal RNA small subunit methyltransferase J
RA	1,736,751	T→A	10.3%	N297Y (AAC→TAC)	dapD ←	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
RA	1,750,733	C→G	9.7%	A31G (GCC→GGC)	PP_1551 →	replication protein O
RA	1,751,425	C→G	11.2%	H262D (CAT→GAT)	PP_1551 →	replication protein O
RA	1,751,428	C→G	11.5%	H263D (CAC→GAC)	PP_1551 →	replication protein O
RA	1,765,243	T→G	7.2%	S136S (TCT→TCG)	PP_1574 →	hypothetical protein
RA	1,765,244	G→T	6.8%	G137C (GGC→TGC)	PP_1574 →	hypothetical protein
RA	1,765,247	A→C	6.5%	T138P (ACG→CCG)	PP_1574 →	hypothetical protein
RA	1,780,925	G→A	6.6%	A140V (GCC→GTC)	dapC ←	N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,539	G→T	9.8%	G98V (GGC→GTC)	rpsB →	30S ribosomal protein S2
RA	1,786,022	T→A	12.3%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,023	T→A	12.2%	intergenic (+39/‑147)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,024	T→A	12.3%	intergenic (+40/‑146)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,787,078	G→A	5.8%	intergenic (+45/‑137)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,787,137	G→T	5.6%	intergenic (+104/‑78)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,788,620	G→T	8.1%	L31L (CTG→CTT)	uppS →	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
RA	1,788,621	C→G	8.1%	L32V (CTG→GTG)	uppS →	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
RA	1,788,630	G→C	7.3%	V35L (GTG→CTG) ‡	uppS →	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
RA	1,788,631	T→A	7.3%	V35E (GTG→GAG) ‡	uppS →	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
RA	1,788,632	G→C	7.6%	V35V (GTG→GTC) ‡	uppS →	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
RA	1,795,791	G→A	6.8%	Q33Q (CAG→CAA)	lpxD →	UDP‑3‑O‑acylglucosamine N‑acyltransferase
RA	1,797,343	A→G	12.2%	K15R (AAG→AGG) ‡	lpxA →	acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase
RA	1,797,344	G→C	12.5%	K15N (AAG→AAC) ‡	lpxA →	acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase
RA	1,797,345	C→T	12.5%	L16L (CTG→TTG)	lpxA →	acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase
RA	1,803,617	C→G	7.0%	intergenic (+76/‑31)	dnaEA → / → accA	DNA polymerase III subunit alpha/acetyl‑CoA carboxylase carboxyltransferase subunit alpha
RA	1,804,648	T→G	7.8%	intergenic (+53/‑119)	accA → / → tilS	acetyl‑CoA carboxylase carboxyltransferase subunit alpha/tRNA lysidine(34) synthetase TilS
RA	1,804,649	T→A	7.8%	intergenic (+54/‑118)	accA → / → tilS	acetyl‑CoA carboxylase carboxyltransferase subunit alpha/tRNA lysidine(34) synthetase TilS
RA	1,804,650	C→A	7.8%	intergenic (+55/‑117)	accA → / → tilS	acetyl‑CoA carboxylase carboxyltransferase subunit alpha/tRNA lysidine(34) synthetase TilS
RA	1,810,280	C→A	6.7%	intergenic (+41/‑128)	eno → / → ftsB	enolase/cell division protein
RA	1,810,284:1	+A	6.2%	intergenic (+45/‑124)	eno → / → ftsB	enolase/cell division protein
RA	1,810,289	Δ1 bp	6.6%	intergenic (+50/‑119)	eno → / → ftsB	enolase/cell division protein
RA	1,810,294	T→G	6.5%	intergenic (+55/‑114)	eno → / → ftsB	enolase/cell division protein
RA	1,819,789	Δ1 bp	8.9%	intergenic (+26/‑449)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,819,795:1	+A	8.9%	intergenic (+32/‑443)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,819,796	T→C	8.9%	intergenic (+33/‑442)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,831,777	G→A	10.4%	R219Q (CGG→CAG)	yfiP →	hypothetical protein
RA	1,831,780	T→C	9.8%	L220P (CTG→CCG)	yfiP →	hypothetical protein
RA	1,831,789	A→C	10.4%	D223A (GAC→GCC)	yfiP →	hypothetical protein
RA	1,836,736	A→T	7.1%	T62S (ACG→TCG)	ttcA →	tRNA 2‑thiocytidine(32) synthetase TtcA
RA	1,836,739	T→A	7.0%	F63I (TTC→ATC) ‡	ttcA →	tRNA 2‑thiocytidine(32) synthetase TtcA
RA	1,836,740	T→A	7.0%	F63Y (TTC→TAC) ‡	ttcA →	tRNA 2‑thiocytidine(32) synthetase TtcA
RA	1,836,743	A→T	8.2%	E64V (GAG→GTG)	ttcA →	tRNA 2‑thiocytidine(32) synthetase TtcA
RA	1,836,749	T→G	8.1%	V66G (GTT→GGT)	ttcA →	tRNA 2‑thiocytidine(32) synthetase TtcA
RA	1,837,949	C→G	10.5%	R190G (CGC→GGC) ‡	PP_1642 →	hypothetical protein
RA	1,837,950	G→T	8.9%	R190L (CGC→CTC) ‡	PP_1642 →	hypothetical protein
RA	1,837,953	A→C	8.5%	D191A (GAC→GCC) ‡	PP_1642 →	hypothetical protein
RA	1,837,954	C→G	8.6%	D191E (GAC→GAG) ‡	PP_1642 →	hypothetical protein
RA	1,839,305	C→T	8.7%	A72T (GCC→ACC)	yfgD ←	arsenate reductase
RA	1,843,996	T→G	100%	E266D (GAA→GAC)	gacS ←	sensor protein GacS
RA	1,851,115	A→C	8.9%	A67A (GCA→GCC)	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	1,854,925	A→T	6.0%	intergenic (+247/‑64)	PP_1658 → / → PP_1659	hypothetical protein/hypothetical protein
RA	1,861,943	C→T	7.4%	A18T (GCC→ACC)	purM ←	phosphoribosylformylglycinamidine cyclo‑ligase
RA	1,861,946	C→A	7.5%	D17Y (GAC→TAC)	purM ←	phosphoribosylformylglycinamidine cyclo‑ligase
RA	1,861,949	T→C	8.0%	I16V (ATC→GTC)	purM ←	phosphoribosylformylglycinamidine cyclo‑ligase
RA	1,861,950	G→A	8.2%	D15D (GAC→GAT)	purM ←	phosphoribosylformylglycinamidine cyclo‑ligase
RA	1,861,953	T→G	8.1%	V14V (GTA→GTC)	purM ←	phosphoribosylformylglycinamidine cyclo‑ligase
RA	1,861,956	A→G	8.7%	G13G (GGT→GGC)	purM ←	phosphoribosylformylglycinamidine cyclo‑ligase
RA	1,870,145	G→T	5.3%	G112V (GGC→GTC)	cobD →	Subunit of adenosylcobinamide‑phosphate synthase beta component
RA	1,870,148	A→C	5.3%	D113A (GAC→GCC)	cobD →	Subunit of adenosylcobinamide‑phosphate synthase beta component
RA	1,874,502	G→A	7.4%	A271A (GCG→GCA)	cobU →	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
RA	1,886,588	A→G	7.6%	I419V (ATC→GTC)	rmuC →	DNA recombination limiting inversions protein
RA	1,886,595	A→T	7.2%	D421V (GAC→GTC)	rmuC →	DNA recombination limiting inversions protein
RA	1,886,602	C→T	7.2%	D423D (GAC→GAT)	rmuC →	DNA recombination limiting inversions protein
RA	1,898,983	T→C	10.3%	intergenic (+53/‑467)	PP_t18 → / → PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
RA	1,898,986	G→A	10.7%	intergenic (+56/‑464)	PP_t18 → / → PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
RA	1,902,220	A→G	15.9%	D924G (GAC→GGC)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,902,225	C→G	15.2%	R926G (CGC→GGC) ‡	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,902,226	G→C	15.2%	R926P (CGC→CCC) ‡	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,902,227	C→G	17.1%	R926R (CGC→CGG) ‡	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,902,232	C→T	14.8%	A928V (GCC→GTC)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,905,766	G→A	6.1%	R674H (CGC→CAC)	nirB →	nitrite reductase large subunit
RA	1,915,598:1	+A	8.2%	intergenic (+26/‑263)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,602	T→A	9.0%	intergenic (+30/‑259)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,605	Δ1 bp	7.7%	intergenic (+33/‑256)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,944,529	C→A	7.7%	intergenic (+30/+232)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,944,530	T→C	7.8%	intergenic (+31/+231)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,944,531	T→A	7.8%	intergenic (+32/+230)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,944,532	G→A	7.8%	intergenic (+33/+229)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,944,533	T→G	7.9%	intergenic (+34/+228)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,956,444	A→G	7.8%	I11M (ATA→ATG)	PP_1754 →	hypothetical protein
RA	1,963,789	A→T	11.5%	M1M (ATG→TTG) †‡	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,790	T→A	11.5%	M1K (ATG→AAG) †‡	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,794	A→C	11.4%	A2A (GCA→GCC)	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,796	A→T	11.7%	N3I (AAT→ATT)	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,798	G→T	11.0%	G4C (GGC→TGC)	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,802	T→A	11.3%	L5Q (CTA→CAA) ‡	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,963,803	A→T	12.3%	L5L (CTA→CTT) ‡	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,987,438	T→C	9.1%	D231D (GAT→GAC)	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,440	T→C	9.1%	L232S (TTG→TCG) ‡	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,441	G→A	8.9%	L232L (TTG→TTA) ‡	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,443	G→A	8.5%	S233N (AGT→AAT)	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	2,016,815	A→T	8.5%	intergenic (‑423/‑1911)	PP_1795 ← / → PP_1797	hypothetical protein/HlyD family secretion protein
RA	2,019,894	T→C	6.9%	V390A (GTC→GCC)	PP_1797 →	HlyD family secretion protein
RA	2,062,850	T→C	7.3%	C589R (TGC→CGC) ‡	PP_1838 →	membrane protein
RA	2,062,851	G→A	7.3%	C589Y (TGC→TAC) ‡	PP_1838 →	membrane protein
RA	2,062,856	G→T	7.5%	G591W (GGG→TGG)	PP_1838 →	membrane protein
RA	2,068,151	A→T	14.2%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,068,152	A→T	14.3%	intergenic (‑97/+24)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,082,279	A→T	9.7%	intergenic (‑58/+1)	ohrR ← / ← PP_1861	organic hydroperoxide resistance transcriptional regulator/LysR family transcriptional regulator
RA	2,082,281	T→A	8.8%	*318L (TAA→TTA)	PP_1861 ←	LysR family transcriptional regulator
RA	2,082,283	A→T	8.6%	D317E (GAT→GAA)	PP_1861 ←	LysR family transcriptional regulator
RA	2,084,111	T→A	5.9%	intergenic (+15/+14)	PP_1862 → / ← PP_1863	membrane protein/LysR family transcriptional regulator
RA	2,084,112	T→A	5.9%	intergenic (+16/+13)	PP_1862 → / ← PP_1863	membrane protein/LysR family transcriptional regulator
RA	2,084,113	T→A	5.9%	intergenic (+17/+12)	PP_1862 → / ← PP_1863	membrane protein/LysR family transcriptional regulator
RA	2,085,482	G→C	8.2%	intergenic (+191/‑404)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,085,483	A→C	8.2%	intergenic (+192/‑403)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,087,500	Δ1 bp	10.3%	intergenic (+313/+605)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,112,033	G→A	6.9%	N751N (AAC→AAT) ‡	PP_1882 ←	membrane protein
RA	2,112,034	T→A	6.8%	N751I (AAC→ATC) ‡	PP_1882 ←	membrane protein
RA	2,112,035	T→C	6.8%	N751D (AAC→GAC) ‡	PP_1882 ←	membrane protein
RA	2,118,718	G→C	10.4%	P798P (CCG→CCC)	PP_1884 →	hypothetical protein
RA	2,118,720	T→A	9.8%	L799Q (CTG→CAG)	PP_1884 →	hypothetical protein
RA	2,118,723	C→G	10.4%	P800R (CCG→CGG)	PP_1884 →	hypothetical protein
RA	2,118,726	T→A	10.4%	L801Q (CTG→CAG)	PP_1884 →	hypothetical protein
RA	2,118,728	G→C	10.7%	G802R (GGG→CGG)	PP_1884 →	hypothetical protein
RA	2,133,330	G→A	8.7%	A92V (GCC→GTC)	fimI ←	type I pili subunit FimI
RA	2,133,333	T→A	9.7%	N91I (AAT→ATT)	fimI ←	type I pili subunit FimI
RA	2,133,336	T→C	8.2%	D90G (GAC→GGC)	fimI ←	type I pili subunit FimI
RA	2,134,271	A→C	9.5%	intergenic (‑37/+32)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,144,368	G→C	10.6%	Q239H (CAG→CAC)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,144,372	C→A	10.3%	L241M (CTG→ATG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,144,377	T→G	9.7%	H242Q (CAT→CAG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,144,381	G→C	7.1%	V244L (GTG→CTG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,147,304	A→T	5.3%	A1072A (GCT→GCA)	rne ←	ribonuclease E
RA	2,159,162	C→T	5.9%	T48T (ACC→ACT)	fabF →	beta‑ketoacyl‑ACP synthase II
RA	2,166,644	T→A	9.3%	intergenic (‑488/‑293)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,170,135	G→A	7.7%	R132C (CGC→TGC)	PP_1923 ←	hypothetical protein
RA	2,177,167	G→A	8.1%	A21A (GCG→GCA)	PP_5485 →	GNAT family acetyltransferase
RA	2,187,362	A→G	8.9%	C83R (TGT→CGT)	PP_1936 ←	membrane protein
RA	2,199,963:1	+C	7.4%	coding (829/1278 nt)	PP_1944 →	aminomethyltransferase
RA	2,211,904	C→T	9.6%	D12D (GAC→GAT)	PP_1955 →	cytochrome P450 family protein
RA	2,211,906	T→G	9.5%	F13C (TTC→TGC) ‡	PP_1955 →	cytochrome P450 family protein
RA	2,211,907	C→A	9.3%	F13L (TTC→TTA) ‡	PP_1955 →	cytochrome P450 family protein
RA	2,211,909	A→G	9.2%	N14S (AAT→AGT)	PP_1955 →	cytochrome P450 family protein
RA	2,218,355	T→A	12.9%	intergenic (‑181/+59)	PP_1958 ← / ← PP_5495	hypothetical protein/hypothetical protein
RA	2,218,357	G→C	13.4%	intergenic (‑183/+57)	PP_1958 ← / ← PP_5495	hypothetical protein/hypothetical protein
RA	2,218,358:1	+G	13.5%	intergenic (‑184/+56)	PP_1958 ← / ← PP_5495	hypothetical protein/hypothetical protein
RA	2,218,365	Δ1 bp	12.8%	intergenic (‑191/+49)	PP_1958 ← / ← PP_5495	hypothetical protein/hypothetical protein
RA	2,218,367	G→C	13.1%	intergenic (‑193/+47)	PP_1958 ← / ← PP_5495	hypothetical protein/hypothetical protein
RA	2,218,369	T→A	13.5%	intergenic (‑195/+45)	PP_1958 ← / ← PP_5495	hypothetical protein/hypothetical protein
RA	2,221,178	G→A	7.5%	R150* (CGA→TGA)	PP_1960 ←	hypothetical protein
RA	2,233,076	A→T	10.8%	intergenic (+36/+195)	PP_1971 → / ← PP_t63	hypothetical protein/tRNA‑Asn
RA	2,234,432	A→G	6.6%	R58R (CGT→CGC)	tyrB ←	aromatic amino acid aminotransferase
RA	2,235,837	G→C	10.0%	P316P (CCG→CCC)	uvrB →	uvrABC excinuclease protein B
RA	2,235,839	C→G	10.0%	A317G (GCC→GGC)	uvrB →	uvrABC excinuclease protein B
RA	2,235,841	G→C	10.2%	G318R (GGG→CGG)	uvrB →	uvrABC excinuclease protein B
RA	2,244,009	G→T	8.0%	R14L (CGC→CTC)	PP_1980 →	hypothetical protein
RA	2,244,522	T→C	12.9%	V23A (GTG→GCG)	dusC →	tRNA‑dihydrouridine synthase DusC
RA	2,249,851	T→A	10.5%	M230L (ATG→TTG)	PP_1984 ←	LysR family transcriptional regulator
RA	2,249,852	C→G	10.4%	K229N (AAG→AAC) ‡	PP_1984 ←	LysR family transcriptional regulator
RA	2,249,853	T→A	10.1%	K229M (AAG→ATG) ‡	PP_1984 ←	LysR family transcriptional regulator
RA	2,258,516	Δ1 bp	8.3%	coding (180/1005 nt)	asd →	aspartate‑semialdehyde dehydrogenase
RA	2,258,520:1	+G	8.1%	coding (184/1005 nt)	asd →	aspartate‑semialdehyde dehydrogenase
RA	2,258,531	C→G	7.0%	A65A (GCC→GCG)	asd →	aspartate‑semialdehyde dehydrogenase
RA	2,261,615	G→C	6.9%	A735P (GCC→CCC) ‡	fimV →	motility protein FimV
RA	2,261,617	C→T	10.1%	A735A (GCC→GCT) ‡	fimV →	motility protein FimV
RA	2,271,666	C→T	14.5%	intergenic (+50/‑50)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,271,667	A→G	14.6%	intergenic (+51/‑49)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,282,006	C→A	8.4%	F276L (TTC→TTA)	PP_2009 →	1‑aminocyclopropane‑1‑carboxylate deaminase
RA	2,295,774	T→G	7.2%	intergenic (+20/+113)	PP_5496 → / ← PP_2023	hypothetical protein/glutathione S‑transferase family protein
RA	2,296,432	G→T	9.7%	L19M (CTG→ATG)	PP_2023 ←	glutathione S‑transferase family protein
RA	2,296,436	C→T	10.2%	A17A (GCG→GCA)	PP_2023 ←	glutathione S‑transferase family protein
RA	2,296,439	A→G	9.8%	R16R (CGT→CGC)	PP_2023 ←	glutathione S‑transferase family protein
RA	2,296,443	A→C	9.8%	M15R (ATG→AGG)	PP_2023 ←	glutathione S‑transferase family protein
RA	2,297,902	A→T	6.2%	A740A (GCT→GCA)	sbcC ←	exonuclease subunit SbcC
RA	2,311,048	G→A	14.3%	V267I (GTA→ATA) ‡	PP_2033 →	hypothetical protein
RA	2,311,049	T→C	13.9%	V267A (GTA→GCA) ‡	PP_2033 →	hypothetical protein
RA	2,313,664	T→C	7.5%	I142V (ATC→GTC)	benE‑I ←	benzoate transport protein
RA	2,336,497	C→T	12.9%	intergenic (‑41/+39)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,498	A→T	13.0%	intergenic (‑42/+38)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,499	A→G	13.0%	intergenic (‑43/+37)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,356,674	A→C	7.6%	W50G (TGG→GGG)	PP_2070 ←	AraC family transcriptional regulator
RA	2,372,081	G→T	8.9%	intergenic (+33/+79)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,082	T→C	9.1%	intergenic (+34/+78)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,083	G→A	8.9%	intergenic (+35/+77)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,084	A→C	10.7%	intergenic (+36/+76)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,376,709	G→A	7.8%	intergenic (+70/‑135)	PP_2083 → / → PP_2084	lipase/ribonuclease activity regulator
RA	2,389,141	T→C	7.4%	M1T (ATG→ACG) †	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,389,144	G→A	7.5%	R2H (CGT→CAT)	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,396,385	C→T	6.7%	R1091H (CGC→CAC)	PP_2100 ←	two‑component system sensor protein
RA	2,397,172	A→C	8.5%	F829V (TTC→GTC)	PP_2100 ←	two‑component system sensor protein
RA	2,397,173	G→C	8.0%	R828R (CGC→CGG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,177	A→T	7.8%	L827Q (CTG→CAG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,181	G→C	8.1%	P826A (CCG→GCG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,182	G→T	8.1%	D825E (GAC→GAA)	PP_2100 ←	two‑component system sensor protein
RA	2,404,087	G→C	6.5%	A238A (GCG→GCC)	PP_2106 →	ammonium transporter
RA	2,405,230	A→C	9.8%	H76P (CAC→CCC)	PP_2108 →	hypothetical protein
RA	2,405,232	G→T	10.0%	V77L (GTG→TTG)	PP_2108 →	hypothetical protein
RA	2,405,237	A→C	10.2%	Q78H (CAA→CAC)	PP_2108 →	hypothetical protein
RA	2,405,239	G→T	9.7%	G79V (GGG→GTG)	PP_2108 →	hypothetical protein
RA	2,414,745	Δ1 bp	10.5%	intergenic (+287/‑58)	PP_2114 → / → PP_2115	transposase/hypothetical protein
RA	2,414,746	C→G	10.6%	intergenic (+288/‑57)	PP_2114 → / → PP_2115	transposase/hypothetical protein
RA	2,414,747	C→A	10.8%	intergenic (+289/‑56)	PP_2114 → / → PP_2115	transposase/hypothetical protein
RA	2,414,748	C→A	10.8%	intergenic (+290/‑55)	PP_2114 → / → PP_2115	transposase/hypothetical protein
RA	2,422,410	T→G	6.5%	L233R (CTG→CGG)	moeA →	molybdenum::molybdopterin ligase
RA	2,422,413	C→A	6.4%	P234Q (CCG→CAG)	moeA →	molybdenum::molybdopterin ligase
RA	2,433,150	A→C	12.1%	Q341P (CAG→CCG)	uup →	ABC transporter ATP‑binding protein
RA	2,433,153	G→T	12.6%	R342L (CGG→CTG)	uup →	ABC transporter ATP‑binding protein
RA	2,448,070	T→C	7.7%	K1005E (AAG→GAG)	PP_2146 ←	SNF2/RAD54 family helicase
RA	2,456,991	T→A	9.1%	L21Q (CTG→CAG)	PP_2150 →	thiamine biosynthesis lipoprotein
RA	2,456,994	A→C	8.9%	E22A (GAG→GCG)	PP_2150 →	thiamine biosynthesis lipoprotein
RA	2,456,997	G→T	9.4%	R23L (CGC→CTC)	PP_2150 →	thiamine biosynthesis lipoprotein
RA	2,457,000	T→A	9.1%	L24Q (CTG→CAG)	PP_2150 →	thiamine biosynthesis lipoprotein
RA	2,522,982	C→A	6.4%	Y1411* (TAC→TAA)	PP_2212 →	leucine‑rich repeat‑containing protein
RA	2,531,583	T→C	7.7%	intergenic (+13/‑163)	PP_2220 → / → PP_2222	DksA/TraR family C4‑type zinc finger protein/hypothetical protein
RA	2,532,765	A→G	7.7%	S4G (AGT→GGT)	PP_2224 →	hypothetical protein
RA	2,555,170	A→G	6.1%	Q384R (CAG→CGG)	PP_2240 →	ABC transporter permease/ATP‑binding protein
RA	2,587,917	C→T	7.8%	H428Y (CAT→TAT)	PP_2266 →	DNA‑directed RNA polymerase
RA	2,594,808	G→T	7.8%	E153* (GAG→TAG)	PP_2272 →	hypothetical protein
RA	2,594,817	Δ1 bp	7.8%	coding (466/606 nt)	PP_2272 →	hypothetical protein
RA	2,628,386	A→C	10.8%	A16A (GCA→GCC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,628,387	G→T	10.6%	G17C (GGC→TGC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,635,440	C→A	12.5%	intergenic (+30/+87)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,635,441	T→C	11.1%	intergenic (+31/+86)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,635,442	C→G	11.1%	intergenic (+32/+85)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,635,443	G→A	11.3%	intergenic (+33/+84)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,635,444	T→G	11.6%	intergenic (+34/+83)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,640,007	A→T	7.4%	V217D (GTC→GAC)	PP_2310 ←	methyl‑accepting chemotaxis transducer
RA	2,669,671	T→G	8.8%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,669,674	C→A	10.2%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,671,863	G→A	6.3%	A152V (GCC→GTC)	acnB ←	aconitate hydratase B
RA	2,707,539	C→T	8.5%	D12N (GAC→AAC)	PP_2370 ←	hypothetical protein
RA	2,726,160	G→A	8.1%	Q166* (CAG→TAG)	PP_2387 ←	hypothetical protein
RA	2,726,161	G→C	8.2%	Y165* (TAC→TAG) ‡	PP_2387 ←	hypothetical protein
RA	2,726,162	T→C	8.1%	Y165C (TAC→TGC) ‡	PP_2387 ←	hypothetical protein
RA	2,730,894	C→G	7.3%	R77R (CGC→CGG)	polB →	DNA polymerase II
RA	2,730,895	C→G	7.3%	P78A (CCG→GCG)	polB →	DNA polymerase II
RA	2,733,268	C→A	6.7%	R56S (CGT→AGT)	PP_2394 →	leucine‑rich repeat‑containing protein
RA	2,740,779	T→C	8.1%	L1053P (CTG→CCG)	PP_2395 →	leucine‑rich repeat‑containing protein
RA	2,744,531	C→T	7.9%	P24S (CCG→TCG)	PP_2399 →	hypothetical protein
RA	2,744,534	C→A	7.9%	P25T (CCG→ACG)	PP_2399 →	hypothetical protein
RA	2,744,539	C→G	7.8%	P26P (CCC→CCG)	PP_2399 →	hypothetical protein
RA	2,744,544	T→G	8.2%	V28G (GTC→GGC)	PP_2399 →	hypothetical protein
RA	2,744,547	A→G	10.0%	E29G (GAG→GGG)	PP_2399 →	hypothetical protein
RA	2,755,080:1	+C	8.2%	coding (1406/3147 nt)	czcA‑II →	cation efflux system protein
RA	2,755,085	G→C	8.3%	G471R (GGG→CGG) ‡	czcA‑II →	cation efflux system protein
RA	2,755,086	G→C	8.3%	G471A (GGG→GCG) ‡	czcA‑II →	cation efflux system protein
RA	2,755,091	Δ1 bp	8.5%	coding (1417/3147 nt)	czcA‑II →	cation efflux system protein
RA	2,793,752	G→T	13.1%	intergenic (+61/+66)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,755	A→C	12.9%	intergenic (+64/+63)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,756	C→A	12.8%	intergenic (+65/+62)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,757	T→G	12.9%	intergenic (+66/+61)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,758	G→T	14.8%	intergenic (+67/+60)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,761	A→C	13.4%	intergenic (+70/+57)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,808,460	A→T	10.4%	intergenic (+86/+66)	PP_2462 → / ← PP_mr35	hypothetical protein/cspA regulatory region
RA	2,808,461	A→T	10.4%	intergenic (+87/+65)	PP_2462 → / ← PP_mr35	hypothetical protein/cspA regulatory region
RA	2,808,462	A→T	10.4%	intergenic (+88/+64)	PP_2462 → / ← PP_mr35	hypothetical protein/cspA regulatory region
RA	2,824,518	A→C	6.9%	E44A (GAG→GCG)	PP_2478 →	isoquinoline 1‑oxidoreductase subunit beta
RA	2,826,825	G→C	12.8%	A80P (GCA→CCA)	PP_2479 →	cytochrome c family protein
RA	2,826,830	G→C	13.1%	W81C (TGG→TGC)	PP_2479 →	cytochrome c family protein
RA	2,873,758	C→G	8.5%	intergenic (+64/+18)	cigR → / ← PP_2527	membrane protein/membrane protein
RA	2,873,759	A→C	8.9%	intergenic (+65/+17)	cigR → / ← PP_2527	membrane protein/membrane protein
RA	2,873,768	A→T	8.9%	intergenic (+74/+8)	cigR → / ← PP_2527	membrane protein/membrane protein
RA	2,885,045	G→C	8.2%	R170R (CGG→CGC)	PP_2540 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,885,049	C→A	8.3%	Q172K (CAG→AAG) ‡	PP_2540 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,885,050	A→C	8.7%	Q172P (CAG→CCG) ‡	PP_2540 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,885,053	G→T	7.7%	R173L (CGT→CTT) ‡	PP_2540 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,885,054	T→G	9.0%	R173R (CGT→CGG) ‡	PP_2540 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,885,058	G→C	8.1%	A175P (GCG→CCG)	PP_2540 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,936,410	C→G	8.2%	T148T (ACC→ACG)	PP_2569 →	MHS family metabolite MFS transporter
RA	2,936,413	C→G	7.6%	Y149* (TAC→TAG)	PP_2569 →	MHS family metabolite MFS transporter
RA	2,939,819	T→C	7.4%	E108G (GAG→GGG) ‡	PP_2572 ←	hypothetical protein
RA	2,939,820	C→T	7.4%	E108K (GAG→AAG) ‡	PP_2572 ←	hypothetical protein
RA	2,939,825	A→G	7.5%	L106P (CTG→CCG) ‡	PP_2572 ←	hypothetical protein
RA	2,939,826	G→A	7.5%	L106L (CTG→TTG) ‡	PP_2572 ←	hypothetical protein
RA	2,951,136	T→C	8.5%	K29R (AAG→AGG)	oguA ←	8‑oxoguanine deaminase
RA	2,951,334	G→C	23.0%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	19.8%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	19.6%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	18.0%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,966,722:1	+G	8.9%	coding (1692/1794 nt)	PP_2596 ←	ABC transporter permease/ATP‑binding protein
RA	2,966,726	T→G	9.3%	E563A (GAA→GCA) ‡	PP_2596 ←	ABC transporter permease/ATP‑binding protein
RA	2,966,727	C→A	9.3%	E563* (GAA→TAA) ‡	PP_2596 ←	ABC transporter permease/ATP‑binding protein
RA	2,966,731	Δ1 bp	9.3%	coding (1683/1794 nt)	PP_2596 ←	ABC transporter permease/ATP‑binding protein
RA	2,971,384	G→A	5.7%	E575K (GAG→AAG)	PP_2599 →	chemotaxis sensory transducer family protein
RA	2,971,390	G→T	5.7%	E577* (GAA→TAA) ‡	PP_2599 →	chemotaxis sensory transducer family protein
RA	2,971,391	A→T	5.9%	E577V (GAA→GTA) ‡	PP_2599 →	chemotaxis sensory transducer family protein
RA	2,971,392	A→C	5.9%	E577D (GAA→GAC) ‡	PP_2599 →	chemotaxis sensory transducer family protein
RA	2,971,398	T→C	6.0%	L579L (CTT→CTC)	PP_2599 →	chemotaxis sensory transducer family protein
RA	2,998,848	T→C	8.5%	Q47R (CAG→CGG)	PP_2622 ←	hypothetical protein
RA	3,006,468	T→G	10.8%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,006,473	G→T	10.4%	L1018L (CTG→CTT)	PP_2627 →	membrane protein
RA	3,006,474	A→C	11.1%	K1019Q (AAG→CAG)	PP_2627 →	membrane protein
RA	3,006,479	C→A	10.2%	D1020E (GAC→GAA)	PP_2627 →	membrane protein
RA	3,009,001	G→A	9.7%	P32S (CCA→TCA)	PP_2628 ←	ABC transporter ATP‑binding protein
RA	3,033,553	C→G	9.8%	R32G (CGC→GGC)	PP_2646 →	hypothetical protein
RA	3,034,248	G→A	8.3%	A314V (GCC→GTC)	PP_2647 ←	MFS transporter
RA	3,034,252	C→G	8.0%	A313P (GCC→CCC)	PP_2647 ←	MFS transporter
RA	3,034,253	A→T	8.0%	G312G (GGT→GGA) ‡	PP_2647 ←	MFS transporter
RA	3,034,254	C→G	7.8%	G312A (GGT→GCT) ‡	PP_2647 ←	MFS transporter
RA	3,034,258	T→C	8.0%	T311A (ACG→GCG)	PP_2647 ←	MFS transporter
RA	3,062,728	A→G	9.3%	V245A (GTG→GCG)	qedH‑I ←	quinoprotein ethanol dehydrogenase
RA	3,076,094	T→G	12.9%	intergenic (‑42/+32)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,079,635	C→T	9.8%	intergenic (‑370/+64)	PP_2688 ← / ← PP_2689	hypothetical protein/endoribonuclease
RA	3,079,641	G→C	10.6%	intergenic (‑376/+58)	PP_2688 ← / ← PP_2689	hypothetical protein/endoribonuclease
RA	3,079,644	G→C	10.4%	intergenic (‑379/+55)	PP_2688 ← / ← PP_2689	hypothetical protein/endoribonuclease
RA	3,079,650	A→G	9.8%	intergenic (‑385/+49)	PP_2688 ← / ← PP_2689	hypothetical protein/endoribonuclease
RA	3,083,377	G→A	7.7%	Q231* (CAG→TAG)	PP_2692 ←	BCCT family transporter
RA	3,101,078	G→A	7.3%	V127I (GTC→ATC) ‡	PP_2710 →	hypothetical protein
RA	3,101,079	T→C	7.4%	V127A (GTC→GCC) ‡	PP_2710 →	hypothetical protein
RA	3,137,653	A→G	8.3%	intergenic (+81/‑209)	PP_2753 → / → PP_2754	ABC transporter ATP‑binding protein/OprD family outer membrane porin
RA	3,142,186	T→C	8.8%	S45S (AGT→AGC)	PP_2758 →	ribose ABC transporter substrate‑binding protein
RA	3,158,699	T→A	9.3%	L240I (TTA→ATA)	opuA →	glycine betaine ABC transporter ATP‑binding protein/permease
RA	3,158,702:1	+G	9.3%	coding (721/2097 nt)	opuA →	glycine betaine ABC transporter ATP‑binding protein/permease
RA	3,158,708	G→C	8.7%	A243P (GCA→CCA)	opuA →	glycine betaine ABC transporter ATP‑binding protein/permease
RA	3,158,713	Δ1 bp	8.5%	coding (732/2097 nt)	opuA →	glycine betaine ABC transporter ATP‑binding protein/permease
RA	3,158,718	T→A	8.3%	I246N (ATC→AAC)	opuA →	glycine betaine ABC transporter ATP‑binding protein/permease
RA	3,181,065	T→C	7.3%	W88R (TGG→CGG)	PP_2791 →	aminoglycoside phosphotransferase
RA	3,189,970	A→T	13.3%	I227N (ATC→AAC)	PP_2799 ←	class III aminotransferase
RA	3,189,972	T→C	13.6%	V226V (GTA→GTG) ‡	PP_2799 ←	class III aminotransferase
RA	3,189,974	C→T	13.6%	V226I (GTA→ATA) ‡	PP_2799 ←	class III aminotransferase
RA	3,189,979	T→G	13.6%	E224A (GAG→GCG) ‡	PP_2799 ←	class III aminotransferase
RA	3,189,980	C→A	13.1%	E224* (GAG→TAG) ‡	PP_2799 ←	class III aminotransferase
RA	3,189,985	A→G	13.0%	I222T (ATC→ACC)	PP_2799 ←	class III aminotransferase
RA	3,189,987	G→A	13.6%	F221F (TTC→TTT) ‡	PP_2799 ←	class III aminotransferase
RA	3,189,989	A→T	13.6%	F221I (TTC→ATC) ‡	PP_2799 ←	class III aminotransferase
RA	3,192,516	C→A	9.8%	P315P (CCG→CCT)	prr ←	gamma‑aminobutyraldehyde dehydrogenase
RA	3,192,519	G→A	10.1%	D314D (GAC→GAT) ‡	prr ←	gamma‑aminobutyraldehyde dehydrogenase
RA	3,192,521	C→G	11.7%	D314H (GAC→CAC) ‡	prr ←	gamma‑aminobutyraldehyde dehydrogenase
RA	3,192,523	T→C	10.1%	D313G (GAT→GGT)	prr ←	gamma‑aminobutyraldehyde dehydrogenase
RA	3,192,526	T→G	10.4%	Q312P (CAG→CCG)	prr ←	gamma‑aminobutyraldehyde dehydrogenase
RA	3,206,302	G→C	9.7%	D536H (GAC→CAC)	PP_2811 →	hypothetical protein
RA	3,208,281	G→A	5.7%	A644T (GCG→ACG)	PP_2812 →	transporter
RA	3,209,677	T→A	5.9%	F301I (TTC→ATC) ‡	PP_2813 →	BNR domain‑containing protein
RA	3,209,678	T→A	5.9%	F301Y (TTC→TAC) ‡	PP_2813 →	BNR domain‑containing protein
RA	3,212,977	T→A	9.4%	M15K (ATG→AAG)	mexC →	multidrug RND transporter membrane fusion protein MexC
RA	3,212,988	T→A	9.8%	L19M (TTG→ATG)	mexC →	multidrug RND transporter membrane fusion protein MexC
RA	3,215,670	C→T	8.3%	L529F (CTC→TTC) ‡	mexD →	multidrug RND transporter MexD
RA	3,215,672	C→G	8.0%	L529L (CTC→CTG) ‡	mexD →	multidrug RND transporter MexD
RA	3,240,644	T→C	6.8%	F114L (TTC→CTC)	PP_2838 →	hypothetical protein
RA	3,252,492	G→A	13.0%	intergenic (+22/+221)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,252,497	T→C	14.3%	intergenic (+27/+216)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,255,843	C→T	9.7%	intergenic (‑106/+30)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,255,846	T→G	9.4%	intergenic (‑109/+27)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,255,849	C→A	11.5%	intergenic (‑112/+24)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,255,852	A→G	10.0%	intergenic (‑115/+21)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,257,471	G→T	10.3%	T161N (ACC→AAC) ‡	PP_2854 ←	hypothetical protein
RA	3,257,472	T→A	10.3%	T161S (ACC→TCC) ‡	PP_2854 ←	hypothetical protein
RA	3,257,480	G→C	12.2%	A158G (GCC→GGC)	PP_2854 ←	hypothetical protein
RA	3,257,488	T→A	10.6%	V155V (GTA→GTT) ‡	PP_2854 ←	hypothetical protein
RA	3,257,489	A→C	11.5%	V155G (GTA→GGA) ‡	PP_2854 ←	hypothetical protein
RA	3,274,310	T→A	11.1%	I23N (ATC→AAC)	eamA →	O‑acetylserine/cysteine export transporter
RA	3,278,095	A→C	9.7%	L9R (CTT→CGT) ‡	ampC ←	beta‑lactamase
RA	3,278,096	G→T	9.7%	L9I (CTT→ATT) ‡	ampC ←	beta‑lactamase
RA	3,282,287	C→T	11.1%	E27K (GAG→AAG)	PP_2883 ←	hypothetical protein
RA	3,282,294:1	+C	12.1%	coding (72/300 nt)	PP_2883 ←	hypothetical protein
RA	3,326,656	A→C	9.1%	K470T (AAG→ACG) ‡	mqo‑III →	malate:quinone oxidoreductase
RA	3,326,657	G→C	9.1%	K470N (AAG→AAC) ‡	mqo‑III →	malate:quinone oxidoreductase
RA	3,326,658	G→T	8.6%	V471L (GTG→TTG)	mqo‑III →	malate:quinone oxidoreductase
RA	3,328,502	G→A	9.1%	G18D (GGC→GAC)	PP_2927 →	hypothetical protein
RA	3,358,938	T→A	9.3%	I249F (ATC→TTC)	PP_2955 ←	CorA family magnesium/cobalt transporter
RA	3,372,047	T→C	7.7%	Q9R (CAG→CGG)	csoR ←	copper utilization transcriptional regulator
RA	3,379,185	A→T	8.1%	S322T (TCT→ACT)	tnpS ←	cointegrate resolution protein S
RA	3,380,536	A→G	14.3%	N70D (AAC→GAC)	tnpT‑I →	cointegrate resolution protein T
RA	3,380,540	T→A	14.3%	L71Q (CTG→CAG)	tnpT‑I →	cointegrate resolution protein T
RA	3,380,544	C→T	13.4%	V72V (GTC→GTT)	tnpT‑I →	cointegrate resolution protein T
RA	3,397,175	G→C	9.9%	L295L (CTG→CTC)	PP_3001 →	CAIB/BAIF family protein
RA	3,466,841	T→G	22.2%	intergenic (‑16/+108)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,466,842	G→C	11.4%	intergenic (‑17/+107)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,466,843	C→A	11.8%	intergenic (‑18/+106)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,484,001	G→C	8.0%	I641M (ATC→ATG)	PP_3091 ←	membrane protein
RA	3,498,252	A→G	7.1%	intergenic (‑656/+50)	PP_5562 ← / ← PP_5563	hypothetical protein/membrane protein
RA	3,498,264	C→G	9.4%	intergenic (‑668/+38)	PP_5562 ← / ← PP_5563	hypothetical protein/membrane protein
RA	3,514,591	A→G	8.1%	N1087D (AAC→GAC)	PP_3108 →	rhs family protein
RA	3,553,793	C→T	8.1%	R154C (CGC→TGC)	PP_3138 →	VirK domain‑containing protein
RA	3,553,796	A→G	8.5%	S155G (AGC→GGC)	PP_3138 →	VirK domain‑containing protein
RA	3,553,797:1	+C	8.7%	coding (464/1002 nt)	PP_3138 →	VirK domain‑containing protein
RA	3,557,606	G→A	12.1%	intergenic (+83/‑96)	PP_3141 → / → PP_3142	WecB/TagA/CpsF family glycosyl transferase/sugar transferase
RA	3,562,060	A→G	7.1%	L158L (TTG→CTG)	PP_3145 ←	hypothetical protein
RA	3,562,063	G→T	7.0%	P157T (CCG→ACG)	PP_3145 ←	hypothetical protein
RA	3,562,064	C→G	7.0%	M156I (ATG→ATC)	PP_3145 ←	hypothetical protein
RA	3,562,067	C→G	6.9%	V155V (GTG→GTC) ‡	PP_3145 ←	hypothetical protein
RA	3,562,068	A→C	6.5%	V155G (GTG→GGG) ‡	PP_3145 ←	hypothetical protein
RA	3,562,071	C→T	6.1%	S154N (AGC→AAC)	PP_3145 ←	hypothetical protein
RA	3,562,902	A→T	7.4%	S308T (TCT→ACT)	PP_3146 ←	oxidoreductase
RA	3,584,898	G→T	7.5%	intergenic (+45/‑90)	benC → / → benD	benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase
RA	3,584,899	A→C	7.1%	intergenic (+46/‑89)	benC → / → benD	benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase
RA	3,587,622:1	+A	7.5%	coding (458/915 nt)	catA‑II →	catechol 1,2‑dioxygenase
RA	3,587,631	Δ1 bp	8.5%	coding (467/915 nt)	catA‑II →	catechol 1,2‑dioxygenase
RA	3,624,144	G→C	9.0%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,633,135	C→T	11.4%	L203L (CTG→TTG)	PP_3201 →	BNR domain‑containing protein
RA	3,641,239	T→G	9.1%	D180A (GAC→GCC)	PP_3208 ←	Pdr/VanB family oxidoreductase
RA	3,641,242	C→T	8.9%	W179* (TGG→TAG) ‡	PP_3208 ←	Pdr/VanB family oxidoreductase
RA	3,641,243	A→G	8.3%	W179R (TGG→CGG) ‡	PP_3208 ←	Pdr/VanB family oxidoreductase
RA	3,641,246	C→A	8.4%	A178S (GCC→TCC)	PP_3208 ←	Pdr/VanB family oxidoreductase
RA	3,667,243	A→G	8.7%	intergenic (+186/+76)	PP_3230 → / ← PP_3231	phosphoribosyl transferase domain‑containing protein/hypothetical protein
RA	3,667,244	G→C	8.8%	intergenic (+187/+75)	PP_3230 → / ← PP_3231	phosphoribosyl transferase domain‑containing protein/hypothetical protein
RA	3,667,253	G→C	9.6%	intergenic (+196/+66)	PP_3230 → / ← PP_3231	phosphoribosyl transferase domain‑containing protein/hypothetical protein
RA	3,667,254	C→T	9.2%	intergenic (+197/+65)	PP_3230 → / ← PP_3231	phosphoribosyl transferase domain‑containing protein/hypothetical protein
RA	3,676,428	T→C	8.0%	K140E (AAG→GAG)	PP_3241 ←	hypothetical protein
RA	3,708,363	T→C	9.8%	M171V (ATG→GTG)	actP‑III ←	acetate permease
RA	3,711,911	T→C	14.3%	S24G (AGC→GGC)	paaB ←	ring 1,2‑phenylacetyl‑CoA epoxidase regulatory subunit
RA	3,714,952	T→C	6.9%	I302V (ATT→GTT)	paaJ ←	3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase
RA	3,723,196	G→A	7.1%	A151A (GCG→GCA)	PP_3288 →	universal stress protein family protein
RA	3,741,010	A→C	6.6%	L308R (CTG→CGG) ‡	PP_3305 ←	TerC family membrane protein
RA	3,741,011	G→T	7.2%	L308M (CTG→ATG) ‡	PP_3305 ←	TerC family membrane protein
RA	3,741,014	C→T	6.9%	G307S (GGC→AGC)	PP_3305 ←	TerC family membrane protein
RA	3,752,333	A→G	6.0%	L517P (CTC→CCC)	PP_3316 ←	chaperone‑associated ATPase
RA	3,755,533	A→C	6.9%	D325A (GAC→GCC)	PP_3319 →	GGDEF domain‑containing sensory box protein
RA	3,757,027	T→G	10.4%	M30L (ATG→CTG)	PP_3320 ←	hypothetical protein
RA	3,757,030	G→T	10.4%	L29M (CTG→ATG)	PP_3320 ←	hypothetical protein
RA	3,757,034	T→A	10.4%	E27D (GAA→GAT)	PP_3320 ←	hypothetical protein
RA	3,757,038	C→G	10.4%	G26A (GGC→GCC)	PP_3320 ←	hypothetical protein
RA	3,757,042	T→A	10.4%	I25F (ATC→TTC)	PP_3320 ←	hypothetical protein
RA	3,757,046	A→C	10.9%	H23Q (CAT→CAG)	PP_3320 ←	hypothetical protein
RA	3,757,049	C→A	11.4%	Q22H (CAG→CAT)	PP_3320 ←	hypothetical protein
RA	3,757,455	A→T	5.7%	S93C (AGC→TGC) ‡	PP_3321 →	hypothetical protein
RA	3,757,457	C→T	7.2%	S93S (AGC→AGT) ‡	PP_3321 →	hypothetical protein
RA	3,761,700	G→C	11.1%	A350P (GCC→CCC) ‡	PP_3325 →	ferric siderophore receptor
RA	3,761,701	C→T	11.7%	A350V (GCC→GTC) ‡	PP_3325 →	ferric siderophore receptor
RA	3,761,705	G→A	11.3%	E351E (GAG→GAA)	PP_3325 →	ferric siderophore receptor
RA	3,761,710	A→C	10.7%	H353P (CAC→CCC)	PP_3325 →	ferric siderophore receptor
RA	3,761,713	G→T	10.9%	G354V (GGG→GTG)	PP_3325 →	ferric siderophore receptor
RA	3,761,718	T→C	7.5%	F356L (TTC→CTC)	PP_3325 →	ferric siderophore receptor
RA	3,762,942	A→T	7.6%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,762,947	A→T	7.3%	I64F (ATC→TTC)	PP_3326 →	hypothetical protein
RA	3,781,955	T→A	7.1%	M277K (ATG→AAG)	nikB →	nickel ABC transporter permease
RA	3,781,959	G→C	7.3%	Q278H (CAG→CAC)	nikB →	nickel ABC transporter permease
RA	3,791,405	C→G	10.3%	G283G (GGC→GGG)	PP_3353 →	sulfatase‑modifying protein
RA	3,791,410	C→G	10.3%	A285G (GCC→GGC)	PP_3353 →	sulfatase‑modifying protein
RA	3,798,699:1	+A	10.9%	coding (201/831 nt)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,704	A→T	11.1%	W66R (TGG→AGG)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,709	Δ1 bp	11.1%	coding (191/831 nt)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,811,856	G→A	15.1%	A60A (GCG→GCA)	PP_3368 →	MFS transporter
RA	3,811,859	T→C	14.7%	Y61Y (TAT→TAC)	PP_3368 →	MFS transporter
RA	3,820,992	T→G	5.9%	M297L (ATG→CTG)	ptxD ←	phosphonate dehydrogenase
RA	3,843,622	C→T	6.6%	R353H (CGC→CAC)	PP_3393 ←	CAIB/BAIF family protein
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,864,500	T→G	7.5%	Q382P (CAG→CCG)	PP_3414 ←	methyl‑accepting chemotaxis transducer/sensory box protein
RA	3,871,606	G→C	10.6%	L259V (CTG→GTG)	PP_3420 ←	sensor histidine kinase
RA	3,871,607	G→C	10.6%	H258Q (CAC→CAG)	PP_3420 ←	sensor histidine kinase
RA	3,882,813	A→G	8.7%	intergenic (+56/‑169)	oprN → / → PP_3428	multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein
RA	3,912,561	T→G	5.1%	C303G (TGC→GGC) ‡	PP_3452 →	GGDEF domain‑containing protein
RA	3,912,562	G→C	5.1%	C303S (TGC→TCC) ‡	PP_3452 →	GGDEF domain‑containing protein
RA	3,912,563	C→A	5.2%	C303* (TGC→TGA) ‡	PP_3452 →	GGDEF domain‑containing protein
RA	3,915,792	C→G	9.4%	A254G (GCC→GGC) ‡	PP_3455 →	multidrug RND transporter membrane fusion protein
RA	3,915,793	C→G	9.3%	A254A (GCC→GCG) ‡	PP_3455 →	multidrug RND transporter membrane fusion protein
RA	3,915,796	C→G	9.4%	Y255* (TAC→TAG)	PP_3455 →	multidrug RND transporter membrane fusion protein
RA	3,915,797	C→G	9.4%	P256A (CCG→GCG)	PP_3455 →	multidrug RND transporter membrane fusion protein
RA	3,917,204	C→T	6.8%	S329L (TCG→TTG)	mexB →	multidrug resistance protein MexB
RA	3,917,206	C→A	6.8%	P330T (CCG→ACG)	mexB →	multidrug resistance protein MexB
RA	3,917,209	T→A	6.8%	F331I (TTC→ATC) ‡	mexB →	multidrug resistance protein MexB
RA	3,917,210	T→A	6.8%	F331Y (TTC→TAC) ‡	mexB →	multidrug resistance protein MexB
RA	3,917,215	A→G	6.9%	K333E (AAG→GAG)	mexB →	multidrug resistance protein MexB
RA	3,928,929	A→G	11.4%	N156D (AAC→GAC)	PP_3464 →	hypothetical protein
RA	3,928,934	G→T	11.1%	L157L (CTG→CTT)	PP_3464 →	hypothetical protein
RA	3,928,936	G→C	11.1%	G158A (GGC→GCC)	PP_3464 →	hypothetical protein
RA	3,928,938	A→C	10.8%	K159Q (AAG→CAG)	PP_3464 →	hypothetical protein
RA	3,928,943	C→T	9.5%	V160V (GTC→GTT)	PP_3464 →	hypothetical protein
RA	3,932,041	C→G	9.2%	G479A (GGC→GCC)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,932,044	C→A	9.0%	R478L (CGC→CTC)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,932,047	T→G	9.3%	E477A (GAG→GCG)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,932,050	C→G	9.3%	G476A (GGC→GCC)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,942,965	T→C	5.5%	T310A (ACC→GCC)	PP_3478 ←	secretion protein
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,984,218	A→T	6.8%	L140Q (CTG→CAG)	PP_3512 ←	membrane protein
RA	3,985,963	C→T	11.1%	D80D (GAC→GAT)	oplB →	5‑oxoprolinase B
RA	3,985,965	A→T	11.1%	D81V (GAC→GTC)	oplB →	5‑oxoprolinase B
RA	3,985,967	A→G	10.6%	I82V (ATC→GTC)	oplB →	5‑oxoprolinase B
RA	3,996,337	A→G	10.7%	intergenic (+15/+30)	PP_3523 → / ← PP_3524	hypothetical protein/hypothetical protein
RA	3,996,343	C→G	10.8%	intergenic (+21/+24)	PP_3523 → / ← PP_3524	hypothetical protein/hypothetical protein
RA	3,996,344	C→G	11.6%	intergenic (+22/+23)	PP_3523 → / ← PP_3524	hypothetical protein/hypothetical protein
RA	3,996,345	C→G	11.6%	intergenic (+23/+22)	PP_3523 → / ← PP_3524	hypothetical protein/hypothetical protein
RA	3,996,346	C→G	11.9%	intergenic (+24/+21)	PP_3523 → / ← PP_3524	hypothetical protein/hypothetical protein
RA	3,996,352	C→T	11.6%	intergenic (+30/+15)	PP_3523 → / ← PP_3524	hypothetical protein/hypothetical protein
RA	3,999,697	G→C	13.8%	V128L (GTG→CTG)	PP_3528 →	ABC transporter substrate‑binding protein
RA	4,000,135	C→T	6.6%	Q274* (CAG→TAG) ‡	PP_3528 →	ABC transporter substrate‑binding protein
RA	4,000,136	A→G	6.2%	Q274R (CAG→CGG) ‡	PP_3528 →	ABC transporter substrate‑binding protein
RA	4,004,143	T→C	8.9%	W37R (TGG→CGG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,004,144	G→T	9.0%	W37L (TGG→TTG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,004,147	A→C	8.6%	Q38P (CAG→CCG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,004,148	G→A	8.4%	Q38Q (CAG→CAA) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,004,300	G→A	7.3%	G89D (GGT→GAT)	PP_3533 →	ornithine cyclodeaminase
RA	4,049,907	A→G	12.6%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,910	C→G	14.8%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,913	C→T	15.0%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,050,010	C→A	9.3%	L15M (CTG→ATG) ‡	oprB‑III →	carbohydrate‑selective porin
RA	4,050,011	T→G	8.0%	L15R (CTG→CGG) ‡	oprB‑III →	carbohydrate‑selective porin
RA	4,056,326	C→T	7.7%	A446T (GCC→ACC)	PP_3575 ←	ferric siderophore receptor
RA	4,063,001	C→G	9.4%	E446D (GAG→GAC) ‡	PP_3581 ←	membrane protein
RA	4,063,002	T→A	9.3%	E446V (GAG→GTG) ‡	PP_3581 ←	membrane protein
RA	4,063,003	C→G	9.3%	E446Q (GAG→CAG) ‡	PP_3581 ←	membrane protein
RA	4,080,919	A→T	6.1%	intergenic (‑143/+20)	amaC ← / ← dpkA	D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase
RA	4,080,920	A→T	6.1%	intergenic (‑144/+19)	amaC ← / ← dpkA	D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase
RA	4,090,056	C→G	11.3%	S36C (TCC→TGC) ‡	gudP →	glucarate transporter
RA	4,090,057	C→G	11.0%	S36S (TCC→TCG) ‡	gudP →	glucarate transporter
RA	4,100,584	A→G	6.6%	E153G (GAA→GGA)	PP_3608 →	LysR family transcriptional regulator
RA	4,103,403	T→G	7.0%	intergenic (‑158/‑59)	PP_3611 ← / → PP_3612	hypothetical protein/TonB‑dependent receptor
RA	4,105,632	T→A	5.9%	intergenic (+38/+47)	PP_3612 → / ← PP_3613	TonB‑dependent receptor/L‑sorbosone dehydrogenase
RA	4,105,634	T→A	5.9%	intergenic (+40/+45)	PP_3612 → / ← PP_3613	TonB‑dependent receptor/L‑sorbosone dehydrogenase
RA	4,138,413	T→C	6.5%	intergenic (‑228/‑89)	PP_3641 ← / → PP_3643	cytosine/purine/uracil/thiamine/allantoin permease family protein/oxidoreductase
RA	4,138,575	A→C	7.0%	D25A (GAC→GCC)	PP_3643 →	oxidoreductase
RA	4,141,558	T→A	8.4%	V174E (GTA→GAA)	PP_3645 →	L‑proline amide hydrolase
RA	4,142,562	C→G	6.7%	A232G (GCC→GGC)	PP_3646 →	aldehyde dehydrogenase family protein
RA	4,142,565	C→G	6.7%	A233G (GCC→GGC)	PP_3646 →	aldehyde dehydrogenase family protein
RA	4,149,779	G→C	7.1%	Q77H (CAG→CAC)	PP_3654 →	leucine‑responsive regulatory protein
RA	4,149,781	C→G	6.0%	P78R (CCG→CGG)	PP_3654 →	leucine‑responsive regulatory protein
RA	4,149,783	G→C	5.8%	V79L (GTG→CTG)	PP_3654 →	leucine‑responsive regulatory protein
RA	4,162,099	T→C	21.7%	intergenic (‑43/+34)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,103	T→A	24.4%	intergenic (‑47/+30)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,104	T→A	20.0%	intergenic (‑48/+29)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,108	G→A	25.0%	intergenic (‑52/+25)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,166,384	A→T	6.7%	P364P (CCT→CCA)	creA ←	creatinase
RA	4,166,837	G→A	5.9%	A213A (GCC→GCT)	creA ←	creatinase
RA	4,183,617	T→C	9.1%	A465A (GCT→GCC)	PP_3680 →	hypothetical protein
RA	4,183,620	A→C	8.6%	P466P (CCA→CCC)	PP_3680 →	hypothetical protein
RA	4,183,628	G→A	9.5%	G469E (GGG→GAG)	PP_3680 →	hypothetical protein
RA	4,190,245	C→G	10.6%	G142R (GGG→CGG)	PP_5612 ←	hypothetical protein
RA	4,190,247	T→A	9.8%	N141I (AAT→ATT)	PP_5612 ←	hypothetical protein
RA	4,190,249	C→G	8.3%	P140P (CCG→CCC)	PP_5612 ←	hypothetical protein
RA	4,233,675	A→C	10.3%	L464V (TTG→GTG)	PP_3711 ←	diguanylate cyclase
RA	4,233,679	C→G	9.8%	G462G (GGG→GGC) ‡	PP_3711 ←	diguanylate cyclase
RA	4,233,680	C→G	9.1%	G462A (GGG→GCG) ‡	PP_3711 ←	diguanylate cyclase
RA	4,233,681	C→G	8.7%	G462R (GGG→CGG) ‡	PP_3711 ←	diguanylate cyclase
RA	4,233,685	G→T	9.0%	H460Q (CAC→CAA)	PP_3711 ←	diguanylate cyclase
RA	4,237,903	T→A	6.5%	Q116L (CAG→CTG)	catB ←	muconate cycloisomerase 1
RA	4,240,914	A→G	9.3%	F262S (TTC→TCC)	PP_3718 ←	aminotransferase
RA	4,244,358	G→C	7.6%	S221R (AGC→AGG)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,246,185	C→G	8.3%	M30I (ATG→ATC)	alr ←	alanine racemase
RA	4,246,188	C→G	11.3%	S29S (TCG→TCC)	alr ←	alanine racemase
RA	4,248,720	G→T	5.8%	A436D (GCT→GAT)	PP_3724 ←	acyl‑CoA synthetase
RA	4,248,723	A→C	6.0%	I435S (ATC→AGC)	PP_3724 ←	acyl‑CoA synthetase
RA	4,252,194	C→A	10.1%	intergenic (‑162/+78)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,197	A→G	10.2%	intergenic (‑165/+75)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,202	G→C	13.7%	intergenic (‑170/+70)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,205	G→C	13.2%	intergenic (‑173/+67)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,210	C→T	13.2%	intergenic (‑178/+62)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,213	T→G	11.9%	intergenic (‑181/+59)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,217	C→T	10.3%	intergenic (‑185/+55)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,264,918	A→T	7.1%	D44V (GAC→GTC)	vanB →	vanillate O‑demethylase oxidoreductase
RA	4,269,462	G→T	8.5%	intergenic (‑162/‑399)	PP_3740 ← / → mrdA‑I	MFS transporter/transpeptidase
RA	4,282,184	G→C	6.8%	T349S (ACC→AGC) ‡	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,185	T→C	7.0%	T349A (ACC→GCC) ‡	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,186	T→C	7.0%	E348E (GAA→GAG) ‡	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,187	T→G	6.6%	E348A (GAA→GCA) ‡	PP_3753 ←	AraC family transcriptional regulator
RA	4,288,746	C→T	9.2%	G126E (GGG→GAG)	PP_3760 ←	methyltransferase
RA	4,288,997	C→T	6.6%	L42L (CTG→CTA)	PP_3760 ←	methyltransferase
RA	4,316,663	T→A	6.3%	V249D (GTC→GAC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,668	A→G	5.9%	M251V (ATG→GTG)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,331,476	A→T	6.7%	E59V (GAA→GTA)	PP_3803 →	cation ABC transporter permease
RA	4,334,340	A→G	6.2%	R145R (CGT→CGC)	PP_3806 ←	isochorismatase family hydrolase
RA	4,340,075	A→T	28.4%	intergenic (+60/‑271)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,076	G→C	26.3%	intergenic (+61/‑270)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,081	A→G	26.3%	intergenic (+66/‑265)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,082	C→T	26.6%	intergenic (+67/‑264)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,083	A→G	27.1%	intergenic (+68/‑263)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,084	C→T	27.5%	intergenic (+69/‑262)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,089	G→C	28.8%	intergenic (+74/‑257)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,090	A→T	26.7%	intergenic (+75/‑256)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,344,318	C→T	9.1%	intergenic (+49/‑107)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,319	A→G	9.3%	intergenic (+50/‑106)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,321	A→T	9.2%	intergenic (+52/‑104)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,348,705	A→G	49.2%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,352,167	G→A	6.9%	A13V (GCG→GTG)	PP_3824 ←	hypothetical protein
RA	4,362,611	T→A	7.8%	intergenic (‑132/‑304)	PP_5634 ← / → adhP	hypothetical protein/alcohol dehydrogenase
RA	4,362,613	C→G	8.0%	intergenic (‑134/‑302)	PP_5634 ← / → adhP	hypothetical protein/alcohol dehydrogenase
RA	4,362,614	C→G	9.8%	intergenic (‑135/‑301)	PP_5634 ← / → adhP	hypothetical protein/alcohol dehydrogenase
RA	4,362,616	T→A	7.7%	intergenic (‑137/‑299)	PP_5634 ← / → adhP	hypothetical protein/alcohol dehydrogenase
RA	4,370,020	G→C	6.6%	A56G (GCC→GGC)	ramA ←	(R)‑stereoselective amidase
RA	4,389,508	T→A	10.1%	T411T (ACA→ACT)	PP_3865 ←	tail protein
RA	4,397,595	T→C	9.5%	H421R (CAC→CGC)	PP_3877 ←	hypothetical protein
RA	4,415,032	T→C	7.3%	intergenic (+141/+27)	PP_5644 → / ← PP_3899	membrane protein/hicB family protein
RA	4,415,037	G→A	8.7%	intergenic (+146/+22)	PP_5644 → / ← PP_3899	membrane protein/hicB family protein
RA	4,424,880	G→A	8.9%	H21H (CAC→CAT) ‡	PP_5647 ←	hypothetical protein
RA	4,424,882	G→C	10.7%	H21D (CAC→GAC) ‡	PP_5647 ←	hypothetical protein
RA	4,424,884	T→C	8.9%	H20R (CAT→CGT)	PP_5647 ←	hypothetical protein
RA	4,430,084	T→G	9.4%	intergenic (+37/‑147)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,430,085	G→T	8.2%	intergenic (+38/‑146)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,430,086	A→C	9.1%	intergenic (+39/‑145)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,430,087	C→A	8.0%	intergenic (+40/‑144)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,446,491	G→C	8.9%	Y358* (TAC→TAG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,446,494	G→C	9.1%	L357L (CTC→CTG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,447,838:1	+T	7.5%	intergenic (‑274/‑48)	nicC ← / → nicX	6‑hydroxynicotinate 3‑monooxygenase/2,5‑dihydroxypyridine 5,6‑dioxygenase
RA	4,447,843	C→G	7.2%	intergenic (‑279/‑43)	nicC ← / → nicX	6‑hydroxynicotinate 3‑monooxygenase/2,5‑dihydroxypyridine 5,6‑dioxygenase
RA	4,447,848	Δ1 bp	7.2%	intergenic (‑284/‑38)	nicC ← / → nicX	6‑hydroxynicotinate 3‑monooxygenase/2,5‑dihydroxypyridine 5,6‑dioxygenase
RA	4,479,177	G→C	6.6%	W176C (TGG→TGC)	ybdR →	Zn‑dependent oxidoreductase
RA	4,509,116	C→G	8.9%	E316Q (GAG→CAG)	serS ←	serine‑‑tRNA ligase
RA	4,509,118	A→T	9.3%	L315Q (CTG→CAG)	serS ←	serine‑‑tRNA ligase
RA	4,509,120	C→G	9.3%	L314L (CTG→CTC)	serS ←	serine‑‑tRNA ligase
RA	4,512,462	C→A	10.5%	G9V (GGT→GTT)	lolA ←	outer membrane lipoprotein carrier protein
RA	4,512,465	T→G	10.6%	N8T (AAC→ACC)	lolA ←	outer membrane lipoprotein carrier protein
RA	4,523,896	G→C	7.0%	G582A (GGC→GCC)	idh →	isocitrate dehydrogenase
RA	4,523,899	C→G	7.0%	A583G (GCC→GGC)	idh →	isocitrate dehydrogenase
RA	4,523,902	G→C	7.0%	G584A (GGC→GCC)	idh →	isocitrate dehydrogenase
RA	4,526,009	A→G	7.8%	K314E (AAG→GAG)	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,528,028	C→T	9.3%	F358F (TTC→TTT)	purB →	adenylosuccinate lyase
RA	4,528,029	G→C	8.9%	E359Q (GAG→CAG)	purB →	adenylosuccinate lyase
RA	4,528,034	C→T	9.7%	A360A (GCC→GCT)	purB →	adenylosuccinate lyase
RA	4,528,035	A→G	9.7%	S361G (AGC→GGC)	purB →	adenylosuccinate lyase
RA	4,528,040	G→C	10.9%	L362L (CTG→CTC)	purB →	adenylosuccinate lyase
RA	4,528,041	A→G	8.7%	K363E (AAA→GAA)	purB →	adenylosuccinate lyase
RA	4,529,049	C→T	7.2%	P217S (CCG→TCG)	PP_4017 →	hypothetical protein
RA	4,530,025	T→A	13.8%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,530,026	T→A	19.6%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,534,634	T→A	7.4%	intergenic (+72/‑48)	cpo → / → PP_4022	non‑heme chloroperoxidase/hypothetical protein
RA	4,534,635	G→A	7.4%	intergenic (+73/‑47)	cpo → / → PP_4022	non‑heme chloroperoxidase/hypothetical protein
RA	4,541,836	C→T	6.6%	Q185* (CAG→TAG) ‡	nhaB →	Na(+)/H(+) antiporter NhaB
RA	4,541,837	A→T	6.7%	Q185L (CAG→CTG) ‡	nhaB →	Na(+)/H(+) antiporter NhaB
RA	4,541,840	A→T	6.6%	Q186L (CAA→CTA) ‡	nhaB →	Na(+)/H(+) antiporter NhaB
RA	4,541,841	A→G	6.5%	Q186Q (CAA→CAG) ‡	nhaB →	Na(+)/H(+) antiporter NhaB
RA	4,544,949	A→C	6.8%	I286S (ATC→AGC)	hyuC ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	4,544,952	A→G	6.6%	V285A (GTG→GCG)	hyuC ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	4,544,956	T→A	6.6%	N284Y (AAC→TAC)	hyuC ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	4,544,963	G→T	6.4%	G281G (GGC→GGA)	hyuC ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	4,551,474	G→C	7.6%	Q281H (CAG→CAC)	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,551,475	G→A	8.0%	V282M (GTG→ATG) ‡	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,551,476	T→C	7.7%	V282A (GTG→GCG) ‡	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,551,477	G→C	7.6%	V282V (GTG→GTC) ‡	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,551,701	A→T	6.3%	D357V (GAC→GTC) ‡	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,551,702	C→G	6.2%	D357E (GAC→GAG) ‡	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,551,703	A→T	6.2%	T358S (ACC→TCC)	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,560,678	A→C	6.3%	S291A (TCC→GCC)	PP_4048 ←	hypothetical protein
RA	4,573,139	A→T	7.3%	K78* (AAA→TAA)	PP_4054 →	hypothetical protein
RA	4,580,599	C→A	7.3%	Q943H (CAG→CAT) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,580,600	T→A	8.4%	Q943L (CAG→CTG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,580,603	T→A	7.3%	K942M (AAG→ATG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,580,604	T→G	7.3%	K942Q (AAG→CAG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,584,214	T→G	8.9%	E457A (GAG→GCG)	glgE ←	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
RA	4,585,478	C→T	8.3%	A36T (GCC→ACC)	glgE ←	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
RA	4,585,553	T→C	12.0%	S11G (AGC→GGC)	glgE ←	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
RA	4,585,555	A→T	11.8%	I10N (ATT→AAT)	glgE ←	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
RA	4,585,557	G→A	11.7%	A9A (GCC→GCT)	glgE ←	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	73.7%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,057:1	+C	26.3%	intergenic (+140/+75)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,587,695	G→T	6.3%	R40R (CGC→CGA) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,697	G→C	6.3%	R40G (CGC→GGC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,698	G→C	6.3%	S39S (TCC→TCG) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,700	A→C	6.7%	S39A (TCC→GCC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,605,501	C→G	5.2%	A306G (GCC→GGC)	PP_4077 →	hypothetical protein
RA	4,605,506	G→C	5.1%	E308Q (GAG→CAG) ‡	PP_4077 →	hypothetical protein
RA	4,605,507	A→T	5.3%	E308V (GAG→GTG) ‡	PP_4077 →	hypothetical protein
RA	4,605,508	G→C	6.0%	E308D (GAG→GAC) ‡	PP_4077 →	hypothetical protein
RA	4,605,513	C→G	5.4%	A310G (GCC→GGC)	PP_4077 →	hypothetical protein
RA	4,614,791	T→G	16.7%	F388V (TTC→GTC)	PP_4085 →	rhs family protein
RA	4,614,794	T→C	17.7%	F389L (TTC→CTC)	PP_4085 →	rhs family protein
RA	4,614,805	G→A	16.9%	E392E (GAG→GAA)	PP_4085 →	rhs family protein
RA	4,614,808	C→A	14.6%	D393E (GAC→GAA)	PP_4085 →	rhs family protein
RA	4,632,497	C→T	6.1%	intergenic (+102/+57)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,632,498	G→T	7.0%	intergenic (+103/+56)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,632,499	A→C	6.0%	intergenic (+104/+55)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,633,809	T→G	6.0%	A434A (GCA→GCC) ‡	uvrC ←	UvrABC system protein C
RA	4,633,810	G→C	6.0%	A434G (GCA→GGA) ‡	uvrC ←	UvrABC system protein C
RA	4,633,811	C→A	7.3%	A434S (GCA→TCA) ‡	uvrC ←	UvrABC system protein C
RA	4,649,982	T→G	15.0%	H311P (CAC→CCC)	PP_4113 ←	hypothetical protein
RA	4,649,985	T→A	13.7%	K310M (AAG→ATG) ‡	PP_4113 ←	hypothetical protein
RA	4,649,986	T→A	13.7%	K310* (AAG→TAG) ‡	PP_4113 ←	hypothetical protein
RA	4,649,989	C→A	14.6%	G309C (GGC→TGC)	PP_4113 ←	hypothetical protein
RA	4,653,190	G→T	10.3%	G11C (GGC→TGC)	PP_5659 →	hypothetical protein
RA	4,653,193	A→C	10.4%	K12Q (AAG→CAG)	PP_5659 →	hypothetical protein
RA	4,654,891	T→C	7.1%	intergenic (+43/‑215)	aceA → / → PP_4118	isocitrate lyase/membrane protein
RA	4,655,763	T→A	8.0%	L220M (TTG→ATG)	PP_4118 →	membrane protein
RA	4,673,549	G→C	11.6%	P107P (CCG→CCC)	PP_4137 →	outer membrane siderophore receptor
RA	4,673,550	G→C	11.6%	G108R (GGG→CGG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,673,551	G→C	11.6%	G108A (GGG→GCG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,684,796	G→A	11.4%	V479M (GTG→ATG)	PP_4146 →	peptide ABC transporter substrate‑binding protein
RA	4,723,275	G→C	6.2%	L97V (CTG→GTG)	htpG ←	chaperone protein HtpG
RA	4,723,276	G→C	6.2%	H96Q (CAC→CAG)	htpG ←	chaperone protein HtpG
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,749,313	C→T	6.2%	G339G (GGC→GGT)	PP_4203 →	ubiquinone oxidoreductase electron transfer flavoprotein
RA	4,756,431	G→T	10.9%	E558* (GAG→TAG) ‡	pvdT →	pyoverdine ABC transporter ATP‑binding protein/permease
RA	4,756,432	A→C	10.9%	E558A (GAG→GCG) ‡	pvdT →	pyoverdine ABC transporter ATP‑binding protein/permease
RA	4,758,136	G→C	9.2%	R470P (CGC→CCC)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,758,141	G→C	9.2%	intergenic (+1/+20)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,758,147	A→G	10.7%	intergenic (+7/+14)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,779,407	C→A	9.1%	intergenic (‑141/+20)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,779,408	A→T	10.0%	intergenic (‑142/+19)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,779,409	T→G	10.0%	intergenic (‑143/+18)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,790,276	C→T	7.4%	Q1188Q (CAG→CAA)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,790,281	A→G	7.2%	L1187L (TTG→CTG)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,795,166	G→A	6.4%	P426L (CCG→CTG)	pvdH ←	diaminobutyrate‑2‑oxoglutarate transaminase
RA	4,796,604	A→G	14.0%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,612	C→T	24.4%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,614	G→C	24.5%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,617	G→C	22.3%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	24.4%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	21.6%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,806,115	A→T	6.2%	S593T (TCG→ACG)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,806,116	A→T	7.1%	R592R (CGT→CGA)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,809,155	T→C	8.3%	L237P (CTG→CCG) ‡	dsbD‑II →	thiol/disulfide interchange protein 2
RA	4,809,156	G→C	8.1%	L237L (CTG→CTC) ‡	dsbD‑II →	thiol/disulfide interchange protein 2
RA	4,809,157	G→A	7.9%	G238S (GGC→AGC)	dsbD‑II →	thiol/disulfide interchange protein 2
RA	4,809,164	T→A	7.3%	L240Q (CTG→CAG)	dsbD‑II →	thiol/disulfide interchange protein 2
RA	4,832,307	T→A	5.8%	N295I (AAT→ATT)	pvdY ←	hydroxyproline acetylase
RA	4,839,503	C→A	6.3%	P49H (CCC→CAC)	PP_4254 →	hypothetical protein
RA	4,842,896	Δ1 bp	10.6%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,842,904:1	+G	11.8%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,843,231	C→A	18.2%	R27R (CGG→AGG)	PP_4259 →	iron‑sulfur cluster‑binding protein
RA	4,853,037	A→G	9.2%	S688S (AGT→AGC)	dnaX ←	DNA polymerase III subunit gamma
RA	4,853,042	C→T	9.4%	A687T (GCT→ACT)	dnaX ←	DNA polymerase III subunit gamma
RA	4,855,539	T→G	13.2%	I106M (ATT→ATG)	PP_4270 →	hypothetical protein
RA	4,855,540	C→A	13.0%	H107N (CAT→AAT)	PP_4270 →	hypothetical protein
RA	4,857,924	A→C	9.0%	T4T (ACT→ACG)	PP_4272 ←	membrane protein
RA	4,858,041	G→C	7.9%	G31A (GGG→GCG)	PP_4273 →	MerR family transcriptional regulator
RA	4,858,044	G→C	8.0%	R32P (CGC→CCC)	PP_4273 →	MerR family transcriptional regulator
RA	4,858,702	C→G	8.3%	intergenic (‑208/+17)	PP_mr50 ← / ← ligA	Bacteria_large_SRP ncRNA/DNA ligase
RA	4,872,965	C→T	6.6%	G219S (GGC→AGC)	aqpZ ←	aquaporin Z
RA	4,896,377	C→T	8.4%	intergenic (+10/‑198)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,399	T→C	10.0%	intergenic (+32/‑176)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,445	G→A	11.9%	intergenic (+78/‑130)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,900,065	A→G	11.9%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,069	G→A	11.8%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,070	T→C	11.8%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,074	C→T	12.3%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,088	T→C	9.2%	intergenic (+49/‑449)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,917,965	G→A	20.9%	V122I (GTC→ATC) ‡	PP_4328 →	hypothetical protein
RA	4,917,966	T→C	20.9%	V122A (GTC→GCC) ‡	PP_4328 →	hypothetical protein
RA	4,930,408	G→C	6.8%	L189V (CTG→GTG)	cheZ ←	protein phosphatase CheZ
RA	4,930,409	T→A	6.4%	T188T (ACA→ACT) ‡	cheZ ←	protein phosphatase CheZ
RA	4,930,410	G→C	7.1%	T188R (ACA→AGA) ‡	cheZ ←	protein phosphatase CheZ
RA	4,947,557	G→C	60.5%	P27R (CCG→CGG)	fliQ ←	flagellar export apparatus protein
RA	4,949,941	C→G	6.5%	G135R (GGC→CGC)	fliM ←	flagellar biosynthesis switching/energizing protein
RA	4,950,189	Δ1 bp	10.4%	coding (155/969 nt)	fliM ←	flagellar biosynthesis switching/energizing protein
RA	4,950,194:1	+C	10.7%	coding (150/969 nt)	fliM ←	flagellar biosynthesis switching/energizing protein
RA	4,950,972	T→G	15.8%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,950,973	C→A	13.6%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,958,620	G→C	7.9%	T27S (ACC→AGC)	fliG ←	flagellar motor switch protein
RA	4,970,597	G→C	7.8%	intergenic (‑355/+39)	fliC ← / ← PP_4379	flagellin/3‑oxoacyl‑ACP synthase
RA	4,970,603	T→C	7.4%	intergenic (‑361/+33)	fliC ← / ← PP_4379	flagellin/3‑oxoacyl‑ACP synthase
RA	4,970,604	G→C	7.5%	intergenic (‑362/+32)	fliC ← / ← PP_4379	flagellin/3‑oxoacyl‑ACP synthase
RA	4,970,605	G→A	7.8%	intergenic (‑363/+31)	fliC ← / ← PP_4379	flagellin/3‑oxoacyl‑ACP synthase
RA	4,970,611	G→C	7.5%	intergenic (‑369/+25)	fliC ← / ← PP_4379	flagellin/3‑oxoacyl‑ACP synthase
RA	4,974,358	T→C	6.4%	K416E (AAG→GAG)	flgK ←	flagellar hook‑associated protein FlgK
RA	4,976,212	C→G	7.8%	D187H (GAC→CAC)	flgJ ←	peptidoglycan hydrolase FlgJ
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,986,590	A→C	7.4%	intergenic (+79/‑86)	flgA → / → flgM	flagella basal body P‑ring formation protein/flagellin biosynthesis negative regulator FlgM
RA	4,986,594	G→T	7.7%	intergenic (+83/‑82)	flgA → / → flgM	flagella basal body P‑ring formation protein/flagellin biosynthesis negative regulator FlgM
RA	4,992,731	G→A	7.4%	V230I (GTA→ATA)	bkdAA →	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
RA	5,027,278	Δ1 bp	8.7%	coding (588/993 nt)	ocd →	ornithine cyclodeaminase
RA	5,027,284:1	+C	9.1%	coding (594/993 nt)	ocd →	ornithine cyclodeaminase
RA	5,064,610	A→G	13.1%	G129G (GGT→GGC) ‡	PP_4461 ←	MFS transporter
RA	5,064,612	C→A	12.7%	G129C (GGT→TGT) ‡	PP_4461 ←	MFS transporter
RA	5,064,613	T→G	12.7%	A128A (GCA→GCC) ‡	PP_4461 ←	MFS transporter
RA	5,064,615	C→T	13.5%	A128T (GCA→ACA) ‡	PP_4461 ←	MFS transporter
RA	5,065,144	A→G	8.6%	L210S (TTG→TCG)	PP_4462 ←	4‑hydroxy‑4‑methyl‑2‑oxoglutarate aldolase
RA	5,072,314	A→G	11.4%	H179H (CAT→CAC)	PP_5689 ←	hypothetical protein
RA	5,078,877	G→C	12.2%	intergenic (‑122/+275)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,087,189	C→G	6.4%	G45A (GGC→GCC)	astB ←	N‑succinylarginine dihydrolase
RA	5,108,664	T→C	6.4%	I134T (ATT→ACT)	PP_4494 →	LysR family transcriptional regulator
RA	5,115,714	C→A	9.3%	R24R (CGG→CGT)	PP_4500 ←	TrpH family protein
RA	5,119,196	G→C	6.1%	E324Q (GAG→CAG)	PP_4505 →	sensor histidine kinase
RA	5,122,627	G→A	7.8%	G41G (GGC→GGT)	PP_4508 ←	AraC family transcriptional regulator
RA	5,129,326	A→C	6.7%	F693C (TTC→TGC)	recQ ←	ATP‑dependent DNA 3'‑5' helicase
RA	5,129,328	C→G	7.3%	Q692H (CAG→CAC) ‡	recQ ←	ATP‑dependent DNA 3'‑5' helicase
RA	5,129,330	G→T	7.3%	Q692K (CAG→AAG) ‡	recQ ←	ATP‑dependent DNA 3'‑5' helicase
RA	5,142,007	G→C	8.9%	M114I (ATG→ATC)	PP_4526 →	MFS transporter
RA	5,142,694:1	+A	7.5%	coding (1029/1173 nt)	PP_4526 →	MFS transporter
RA	5,142,698	G→C	7.4%	A345P (GCG→CCG)	PP_4526 →	MFS transporter
RA	5,161,581	G→A	8.7%	V117I (GTC→ATC)	PP_4544 →	hypothetical protein
RA	5,162,202	T→A	5.7%	W324R (TGG→AGG) ‡	PP_4544 →	hypothetical protein
RA	5,162,204	G→C	5.7%	W324C (TGG→TGC) ‡	PP_4544 →	hypothetical protein
RA	5,162,208	G→C	5.7%	A326P (GCT→CCT) ‡	PP_4544 →	hypothetical protein
RA	5,162,210	T→A	6.6%	A326A (GCT→GCA) ‡	PP_4544 →	hypothetical protein
RA	5,162,622	C→G	12.4%	intergenic (+145/+56)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,173,244	T→C	15.0%	intergenic (‑285/+47)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,247	G→C	15.4%	intergenic (‑288/+44)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,248	G→C	15.4%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,251	G→A	17.0%	intergenic (‑292/+40)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,181,146	A→T	11.6%	L266H (CTC→CAC)	PP_4560 ←	ribonuclease BN
RA	5,181,149	A→T	11.0%	L265Q (CTG→CAG)	PP_4560 ←	ribonuclease BN
RA	5,181,152	A→T	11.6%	L264Q (CTG→CAG)	PP_4560 ←	ribonuclease BN
RA	5,181,155	A→T	11.5%	V263E (GTG→GAG)	PP_4560 ←	ribonuclease BN
RA	5,182,065	T→G	13.8%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,066	C→A	14.8%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,072	A→C	11.6%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,836	G→T	6.0%	R109L (CGC→CTC)	PP_4562 →	hypothetical protein
RA	5,182,839	A→C	8.8%	D110A (GAC→GCC)	PP_4562 →	hypothetical protein
RA	5,182,846	T→G	8.5%	R112R (CGT→CGG)	PP_4562 →	hypothetical protein
RA	5,182,847	C→A	8.2%	P113T (CCG→ACG)	PP_4562 →	hypothetical protein
RA	5,182,854	G→T	6.3%	G115V (GGC→GTC)	PP_4562 →	hypothetical protein
RA	5,184,686	C→T	7.2%	R275C (CGT→TGT)	PP_4564 →	lipoprotein
RA	5,192,754	C→A	9.4%	intergenic (+135/‑67)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,202,981	C→A	5.6%	L430M (CTG→ATG) ‡	PP_4583 →	putative Peptidase
RA	5,202,982	T→G	5.3%	L430R (CTG→CGG) ‡	PP_4583 →	putative Peptidase
RA	5,205,616	C→A	7.2%	V273L (GTG→TTG)	PP_4586 ←	hypothetical protein
RA	5,210,162	A→C	7.9%	intergenic (‑28/+150)	rnd ← / ← PP_4592	ribonuclease D/metal dependent hydrolase
RA	5,212,472	C→T	13.3%	intergenic (+36/+58)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,475	G→A	13.3%	intergenic (+39/+55)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,487	A→G	12.8%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,488	C→A	12.6%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,491	T→G	12.8%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,492	C→T	8.5%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,504	T→C	11.1%	intergenic (+68/+26)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,507	A→G	10.9%	intergenic (+71/+23)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,232,054	C→G	13.2%	A214A (GCG→GCC)	PP_4610 ←	PepSY‑associated TM helix domain‑containing protein
RA	5,232,057	C→G	12.7%	P213P (CCG→CCC)	PP_4610 ←	PepSY‑associated TM helix domain‑containing protein
RA	5,240,646	A→G	6.3%	N70D (AAT→GAT)	PP_4618 →	hypothetical protein
RA	5,241,983	T→C	7.2%	E398E (GAA→GAG)	hmgB ←	fumarylacetoacetase
RA	5,245,902	C→T	7.0%	R920Q (CGG→CAG)	PP_4623 ←	hypothetical protein
RA	5,256,133	G→A	5.9%	L221L (CTG→CTA)	folM →	bifunctional dihydrofolate reductase/dihydromonapterin reductase
RA	5,256,864	T→A	10.8%	intergenic (+16/+29)	PP_5703 → / ← PP_4634	type III effector protein HopJ/alpha/beta family hydrolase
RA	5,256,865	T→A	9.1%	intergenic (+17/+28)	PP_5703 → / ← PP_4634	type III effector protein HopJ/alpha/beta family hydrolase
RA	5,257,871	T→C	6.1%	intergenic (‑70/+74)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,257,872	G→A	6.1%	intergenic (‑71/+73)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,257,874	A→G	6.2%	intergenic (‑73/+71)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,257,883	T→C	5.8%	intergenic (‑82/+62)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,257,889	G→T	5.6%	intergenic (‑88/+56)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,257,890	G→T	5.8%	intergenic (‑89/+55)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,257,891	G→C	5.4%	intergenic (‑90/+54)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,257,892	A→T	5.9%	intergenic (‑91/+53)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,257,893	G→C	6.6%	intergenic (‑92/+52)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,257,894	A→C	5.2%	intergenic (‑93/+51)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,257,895	A→C	5.1%	intergenic (‑94/+50)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,257,901	G→A	5.5%	intergenic (‑100/+44)	PP_4634 ← / ← PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
RA	5,286,505:1	+G	8.3%	coding (801/1668 nt)	ggt ←	gamma‑glutamyltranspeptidase
RA	5,289,588	G→C	6.9%	L246L (CTC→CTG) ‡	PP_4663 ←	transmembrane protein
RA	5,289,589	A→T	8.0%	L246H (CTC→CAC) ‡	PP_4663 ←	transmembrane protein
RA	5,289,590	G→C	7.2%	L246V (CTC→GTC) ‡	PP_4663 ←	transmembrane protein
RA	5,297,191	A→C	7.5%	S58A (TCG→GCG)	TpbB ←	diguanylate cyclase
RA	5,297,192	G→C	7.7%	R57R (CGC→CGG)	TpbB ←	diguanylate cyclase
RA	5,297,195	G→C	7.8%	A56A (GCC→GCG) ‡	TpbB ←	diguanylate cyclase
RA	5,297,196	G→T	7.9%	A56D (GCC→GAC) ‡	TpbB ←	diguanylate cyclase
RA	5,300,642	T→C	10.8%	D1044G (GAC→GGC)	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,300,650	C→G	10.5%	P1041P (CCG→CCC)	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,317,515	G→C	6.9%	R45G (CGT→GGT)	ilvH ←	acetolactate synthase small subunit
RA	5,317,520	A→C	7.0%	L43R (CTG→CGG) ‡	ilvH ←	acetolactate synthase small subunit
RA	5,317,521	G→C	8.4%	L43V (CTG→GTG) ‡	ilvH ←	acetolactate synthase small subunit
RA	5,317,522	G→T	9.6%	T42T (ACC→ACA)	ilvH ←	acetolactate synthase small subunit
RA	5,317,527	G→C	8.3%	P41A (CCG→GCG)	ilvH ←	acetolactate synthase small subunit
RA	5,323,923	A→G	7.3%	Q186R (CAG→CGG)	PP_4684 →	kinase‑like domain‑containing protein
RA	5,330,992	A→T	9.1%	L190Q (CTG→CAG)	PP_4692 ←	aspartate/tyrosine/aromatic aminotransferase
RA	5,330,994	G→C	9.1%	C189W (TGC→TGG) ‡	PP_4692 ←	aspartate/tyrosine/aromatic aminotransferase
RA	5,330,996	A→T	9.1%	C189S (TGC→AGC) ‡	PP_4692 ←	aspartate/tyrosine/aromatic aminotransferase
RA	5,346,033	C→T	6.9%	H477H (CAC→CAT)	acsA‑II →	acetyl‑CoA synthetase
RA	5,346,038	G→T	6.9%	R479L (CGG→CTG)	acsA‑II →	acetyl‑CoA synthetase
RA	5,346,040	A→G	6.9%	M480V (ATG→GTG)	acsA‑II →	acetyl‑CoA synthetase
RA	5,346,386	C→A	5.5%	A595E (GCG→GAG)	acsA‑II →	acetyl‑CoA synthetase
RA	5,351,342	A→C	7.7%	intergenic (+21/+55)	PP_4706 → / ← PP_4707	hypothetical protein/OsmY‑like protein
RA	5,351,345	G→T	6.5%	intergenic (+24/+52)	PP_4706 → / ← PP_4707	hypothetical protein/OsmY‑like protein
RA	5,362,215	C→G	10.9%	V49L (GTG→CTG)	tpiA ←	triose phosphate isomerase
RA	5,362,216	C→G	12.6%	Q48H (CAG→CAC)	tpiA ←	triose phosphate isomerase
RA	5,366,286	G→A	8.2%	V90V (GTC→GTT)	ftsH ←	integral membrane ATP‑dependent zinc metallopeptidase
RA	5,366,297	T→C	8.7%	N87D (AAC→GAC)	ftsH ←	integral membrane ATP‑dependent zinc metallopeptidase
RA	5,368,670	G→T	7.2%	R14S (CGC→AGC)	greA ←	transcription elongation factor GreA
RA	5,368,671	A→C	7.7%	A13A (GCT→GCG)	greA ←	transcription elongation factor GreA
RA	5,376,248	G→A	6.3%	H439H (CAC→CAT)	dnaK ←	chaperone protein DnaK
RA	5,389,358	G→A	9.5%	intergenic (+57/‑263)	dld2 → / → PP_4738	D‑lactate dehydrogenase/hypothetical protein
RA	5,391,329	A→G	8.5%	E82E (GAA→GAG)	PP_5707 →	hypothetical protein
RA	5,391,330	C→T	8.5%	L83F (CTC→TTC)	PP_5707 →	hypothetical protein
RA	5,406,053	C→G	6.6%	A185A (GCG→GCC)	PP_4750 ←	amino acid ABC transporter permease
RA	5,412,330	G→A	6.0%	P614S (CCC→TCC)	PP_4755 ←	ferrichrome‑iron receptor
RA	5,426,086	G→C	7.4%	G208R (GGC→CGC)	PP_4765 →	hypothetical protein
RA	5,426,090	G→C	7.5%	W209S (TGG→TCG) ‡	PP_4765 →	hypothetical protein
RA	5,426,091	G→C	7.5%	W209C (TGG→TGC) ‡	PP_4765 →	hypothetical protein
RA	5,426,095	G→C	7.9%	A211P (GCG→CCG)	PP_4765 →	hypothetical protein
RA	5,427,915	A→T	10.3%	L63Q (CTG→CAG)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,427,923	C→G	7.5%	L60L (CTG→CTC)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,450,204	T→C	5.7%	L28L (TTG→CTG)	ybeY →	endoribonuclease YbeY
RA	5,450,210	C→T	6.0%	Q30* (CAG→TAG)	ybeY →	endoribonuclease YbeY
RA	5,458,892:1	+A	10.3%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,458,898	Δ1 bp	10.0%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,463,400	T→A	7.9%	intergenic (‑51/+48)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,463,401	T→A	8.0%	intergenic (‑52/+47)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,463,407	Δ1 bp	6.9%	intergenic (‑58/+41)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,464,282	A→T	10.2%	R61R (CGT→CGA)	lipA ←	lipoyl synthase
RA	5,464,286	A→G	10.2%	V60A (GTG→GCG) ‡	lipA ←	lipoyl synthase
RA	5,464,287	C→T	9.9%	V60M (GTG→ATG) ‡	lipA ←	lipoyl synthase
RA	5,464,291	A→T	9.8%	I58I (ATT→ATA)	lipA ←	lipoyl synthase
RA	5,464,862	A→G	8.5%	Y86H (TAC→CAC)	lipB ←	octanoyltransferase
RA	5,464,864	G→C	8.3%	A85G (GCC→GGC)	lipB ←	octanoyltransferase
RA	5,464,866	C→T	8.5%	V84V (GTG→GTA)	lipB ←	octanoyltransferase
RA	5,469,180	A→T	5.8%	L273H (CTC→CAC)	mrdB ←	murein transpeptidase factor
RA	5,469,183	A→T	6.2%	V272E (GTG→GAG)	mrdB ←	murein transpeptidase factor
RA	5,470,163	A→T	7.4%	V581D (GTT→GAT)	mrdA‑II ←	transpeptidase
RA	5,472,156	T→A	8.9%	K95M (AAG→ATG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,472,157	T→A	8.9%	K95* (AAG→TAG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,472,222	T→G	7.7%	E73A (GAG→GCG)	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,473,801	T→C	7.5%	I332V (ATC→GTC)	proA ←	gamma‑glutamyl phosphate reductase
RA	5,473,808	G→A	7.9%	N329N (AAC→AAT) ‡	proA ←	gamma‑glutamyl phosphate reductase
RA	5,473,809	T→A	8.5%	N329I (AAC→ATC) ‡	proA ←	gamma‑glutamyl phosphate reductase
RA	5,473,810	T→C	8.5%	N329D (AAC→GAC) ‡	proA ←	gamma‑glutamyl phosphate reductase
RA	5,473,817	G→A	8.3%	D326D (GAC→GAT)	proA ←	gamma‑glutamyl phosphate reductase
RA	5,485,150	A→G	20.7%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,153	A→G	27.6%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,154	T→C	26.9%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,159	G→A	29.8%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,162	T→C	37.2%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,167	G→A	32.2%	intergenic (+73/‑74)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,168	C→T	32.1%	intergenic (+74/‑73)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,171	C→T	32.1%	intergenic (+77/‑70)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,825	A→T	5.1%	Y214N (TAC→AAC)	PP_5715 ←	hypothetical protein
RA	5,518,539	A→T	7.4%	A14A (GCT→GCA)	PP_4850 ←	membrane protein
RA	5,518,544	G→C	7.4%	P13A (CCC→GCC)	PP_4850 ←	membrane protein
RA	5,518,546	A→T	7.0%	I12N (ATT→AAT)	PP_4850 ←	membrane protein
RA	5,518,548	G→C	7.0%	G11G (GGC→GGG)	PP_4850 ←	membrane protein
RA	5,518,553	A→T	7.0%	C10S (TGC→AGC)	PP_4850 ←	membrane protein
RA	5,525,770	C→A	5.8%	intergenic (+60/‑63)	PP_4858 → / → PP_4859	hypothetical protein/TetR family transcriptional regulator
RA	5,525,773	T→G	7.0%	intergenic (+63/‑60)	PP_4858 → / → PP_4859	hypothetical protein/TetR family transcriptional regulator
RA	5,531,010	A→C	8.6%	R421R (CGT→CGG)	braE ←	high‑affinity branched‑chain amino acid ABC transporter permease BraE
RA	5,540,150	T→G	11.9%	E279A (GAG→GCG)	PP_4872 ←	hypothetical protein
RA	5,540,152	G→C	11.9%	I278M (ATC→ATG)	PP_4872 ←	hypothetical protein
RA	5,540,155	G→C	12.7%	A277A (GCC→GCG) ‡	PP_4872 ←	hypothetical protein
RA	5,540,157	C→A	11.2%	A277S (GCC→TCC) ‡	PP_4872 ←	hypothetical protein
RA	5,541,720	T→A	6.5%	I327F (ATC→TTC)	dnaB ←	replicative DNA helicase
RA	5,541,721	T→A	6.5%	E326D (GAA→GAT)	dnaB ←	replicative DNA helicase
RA	5,549,605	T→A	10.6%	intergenic (+18/‑154)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,549,606	T→A	10.6%	intergenic (+19/‑153)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,552,913	T→G	11.4%	intergenic (+576/+85)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,552,915	C→A	17.4%	intergenic (+578/+83)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,557,922	T→G	11.3%	intergenic (‑293/+38)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,557,923	C→A	15.4%	intergenic (‑294/+37)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,557,924	T→G	11.4%	intergenic (‑295/+36)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,557,925	C→A	12.8%	intergenic (‑296/+35)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,558,025	T→C	7.4%	I410V (ATC→GTC)	purA ←	adenylosuccinate synthetase
RA	5,561,233	A→T	6.1%	A145A (GCT→GCA)	hflC ←	integral membrane ATP‑dependent zinc metallopeptidase
RA	5,561,241	G→C	6.1%	L143V (CTG→GTG)	hflC ←	integral membrane ATP‑dependent zinc metallopeptidase
RA	5,565,749	G→A	6.2%	H579H (CAC→CAT)	mutL ←	DNA mismatch repair protein MutL
RA	5,565,754	A→T	6.7%	C578S (TGC→AGC)	mutL ←	DNA mismatch repair protein MutL
RA	5,565,755	A→T	6.7%	A577A (GCT→GCA)	mutL ←	DNA mismatch repair protein MutL
RA	5,565,760	T→C	6.4%	M576V (ATG→GTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,575,613	G→A	8.1%	A179V (GCG→GTG)	motA ←	flagellar motor rotation protein
RA	5,577,810	G→C	5.8%	G511A (GGT→GCT)	PP_4906 →	hypothetical protein
RA	5,577,812	T→C	5.8%	*512R (TGA→CGA)	PP_4906 →	hypothetical protein
RA	5,577,815	G→C	5.9%	intergenic (+1/‑44)	PP_4906 → / → rhdA	hypothetical protein/thiosulfate sulfurtransferase
RA	5,579,587	T→G	6.8%	intergenic (+46/+30)	psd → / ← serB	phosphatidylserine decarboxylase/phosphoserine phosphatase
RA	5,579,595	C→A	10.7%	intergenic (+54/+22)	psd → / ← serB	phosphatidylserine decarboxylase/phosphoserine phosphatase
RA	5,579,596	T→A	11.2%	intergenic (+55/+21)	psd → / ← serB	phosphatidylserine decarboxylase/phosphoserine phosphatase
RA	5,579,597	T→G	11.3%	intergenic (+56/+20)	psd → / ← serB	phosphatidylserine decarboxylase/phosphoserine phosphatase
RA	5,581,575	C→G	6.1%	P204A (CCG→GCG)	PP_4910 →	hypothetical protein
RA	5,608,300	G→C	10.4%	intergenic (‑162/+26)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,994	G→C	8.2%	R202G (CGC→GGC)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,997	C→G	8.0%	E201Q (GAG→CAG)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,609,000	G→C	7.9%	P200A (CCT→GCT)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,609,691	G→A	6.3%	A275V (GCC→GTC)	PP_4929 ←	LysR family transcriptional regulator
RA	5,610,644	C→T	6.7%	S20L (TCG→TTG) ‡	emrE →	small multidrug resistance protein
RA	5,610,645	G→C	6.8%	S20S (TCG→TCC) ‡	emrE →	small multidrug resistance protein
RA	5,610,648	G→C	6.7%	M21I (ATG→ATC)	emrE →	small multidrug resistance protein
RA	5,610,649	A→G	6.8%	K22E (AAG→GAG)	emrE →	small multidrug resistance protein
RA	5,614,703	A→C	8.8%	I273M (ATT→ATG)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,614,706	G→T	8.7%	A272A (GCC→GCA)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,618,111	G→C	8.8%	R181G (CGT→GGT)	wzy ←	O‑antigen polymerase
RA	5,618,115	C→G	8.8%	R179R (CGG→CGC)	wzy ←	O‑antigen polymerase
RA	5,618,119	G→C	8.3%	P178R (CCT→CGT)	wzy ←	O‑antigen polymerase
RA	5,622,932	A→C	10.9%	M269R (ATG→AGG) ‡	PP_4941 ←	hypothetical protein
RA	5,622,933	T→A	11.1%	M269L (ATG→TTG) ‡	PP_4941 ←	hypothetical protein
RA	5,622,934	G→T	12.3%	A268A (GCC→GCA)	PP_4941 ←	hypothetical protein
RA	5,634,457	T→G	14.9%	intergenic (+33/+350)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,634,458	C→A	13.1%	intergenic (+34/+349)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,638,103	G→A	6.8%	A213T (GCG→ACG)	PP_4949 →	TldD/PmbA family peptidase
RA	5,649,236	A→T	8.0%	C653S (TGC→AGC)	PP_4959 ←	diguanylate cyclase
RA	5,650,674	A→C	7.8%	H173Q (CAT→CAG) ‡	PP_4959 ←	diguanylate cyclase
RA	5,650,675	T→A	7.8%	H173L (CAT→CTT) ‡	PP_4959 ←	diguanylate cyclase
RA	5,650,676	G→T	8.2%	H173N (CAT→AAT) ‡	PP_4959 ←	diguanylate cyclase
RA	5,655,626:1	+A	10.6%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,631	T→G	10.9%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	12.3%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,657,779	T→G	13.9%	intergenic (‑85/‑167)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,657,781	A→T	13.3%	intergenic (‑87/‑165)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,657,782	A→T	13.5%	intergenic (‑88/‑164)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,657,785	G→C	13.9%	intergenic (‑91/‑161)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,660,182	G→T	12.2%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,660,185	A→C	11.0%	intergenic (+38/‑191)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,666,371	C→T	5.9%	P129S (CCC→TCC)	nhaP →	NhaP‑type Na+(K+)/H+ antiporter
RA	5,670,453	G→A	8.0%	intergenic (+42/‑43)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,457	A→T	7.7%	intergenic (+46/‑39)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,458	T→A	7.4%	intergenic (+47/‑38)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,459	A→T	7.4%	intergenic (+48/‑37)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,463	T→C	7.7%	intergenic (+52/‑33)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,672,362	G→C	8.5%	A204A (GCG→GCC)	PP_4979 →	substrate‑binding protein
RA	5,672,366	T→G	7.9%	Y206D (TAC→GAC) ‡	PP_4979 →	substrate‑binding protein
RA	5,672,367	A→T	8.1%	Y206F (TAC→TTC) ‡	PP_4979 →	substrate‑binding protein
RA	5,672,368	C→A	9.5%	Y206* (TAC→TAA) ‡	PP_4979 →	substrate‑binding protein
RA	5,672,372	G→C	7.4%	G208R (GGC→CGC)	PP_4979 →	substrate‑binding protein
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
JC	5,681,415	+CGGG	100%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,688,183	Δ1 bp	7.4%	coding (783/2061 nt)	pilJ ←	twitching motility protein PilJ
RA	5,688,515	Δ1 bp	5.7%	coding (451/2061 nt)	pilJ ←	twitching motility protein PilJ
RA	5,688,520	T→A	5.8%	Q149L (CAG→CTG)	pilJ ←	twitching motility protein PilJ
RA	5,696,767	C→T	16.0%	T3I (ACA→ATA)	hslV →	ATP‑dependent HslVU protease peptidase subunit
RA	5,728,840	A→G	6.0%	intergenic (‑203/+121)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,728,843	A→T	5.8%	intergenic (‑206/+118)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,728,844	A→T	5.8%	intergenic (‑207/+117)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,728,847	C→T	6.3%	intergenic (‑210/+114)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,732,263	A→G	6.2%	I98T (ATC→ACC)	hutI ←	imidazolonepropionase
RA	5,732,266	C→T	6.4%	G97D (GGT→GAT)	hutI ←	imidazolonepropionase
RA	5,735,794	T→G	10.5%	D551A (GAC→GCC)	hutU ←	urocanate hydratase
RA	5,735,797	A→T	10.2%	L550Q (CTG→CAG)	hutU ←	urocanate hydratase
RA	5,735,800	C→A	10.3%	G549V (GGC→GTC)	hutU ←	urocanate hydratase
RA	5,740,467	T→G	15.5%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,470	A→T	11.1%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,471	A→T	9.1%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,474	C→A	9.1%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,741,508	A→T	7.6%	intergenic (‑179/+49)	PP_5038 ← / ← PP_5039	lipoprotein/hypothetical protein
RA	5,741,884	G→C	6.7%	D90E (GAC→GAG) ‡	PP_5039 ←	hypothetical protein
RA	5,741,885	T→G	6.7%	D90A (GAC→GCC) ‡	PP_5039 ←	hypothetical protein
RA	5,741,890	C→T	6.5%	E88E (GAG→GAA)	PP_5039 ←	hypothetical protein
RA	5,758,996	G→A	7.3%	A27T (GCC→ACC)	trmL →	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL
RA	5,767,352	T→G	5.9%	M1174L (ATG→CTG)	PP_5060 ←	hypothetical protein
RA	5,777,550	C→A	6.6%	Q675H (CAG→CAT)	PP_5065 ←	hypothetical protein
RA	5,780,686	G→A	7.6%	R330R (CGG→CGA)	cvrA →	K(+)/H(+) antiporter NhaP
RA	5,780,691	T→C	7.3%	L332P (CTG→CCG)	cvrA →	K(+)/H(+) antiporter NhaP
RA	5,780,693	T→A	7.3%	S333T (TCG→ACG) ‡	cvrA →	K(+)/H(+) antiporter NhaP
RA	5,780,695	G→A	7.4%	S333S (TCG→TCA) ‡	cvrA →	K(+)/H(+) antiporter NhaP
RA	5,780,700	T→C	9.2%	V335A (GTC→GCC)	cvrA →	K(+)/H(+) antiporter NhaP
RA	5,789,980	C→A	5.9%	G379G (GGC→GGA)	ynfM →	efflux transporter
RA	5,789,981	T→G	5.9%	S380A (TCC→GCC)	ynfM →	efflux transporter
RA	5,791,127	G→A	7.6%	I197I (ATC→ATT) ‡	hemE ←	uroporphyrinogen decarboxylase
RA	5,791,128	A→T	7.6%	I197N (ATC→AAC) ‡	hemE ←	uroporphyrinogen decarboxylase
RA	5,791,129	T→C	7.6%	I197V (ATC→GTC) ‡	hemE ←	uroporphyrinogen decarboxylase
RA	5,798,256	A→G	6.8%	intergenic (‑357/+17)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,798,375	T→G	12.5%	A496A (GCA→GCC) ‡	PP_5077 ←	hypothetical protein
RA	5,798,376	G→A	12.5%	A496V (GCA→GTA) ‡	PP_5077 ←	hypothetical protein
RA	5,798,379	T→C	12.5%	D495G (GAC→GGC) ‡	PP_5077 ←	hypothetical protein
RA	5,798,380	C→A	12.4%	D495Y (GAC→TAC) ‡	PP_5077 ←	hypothetical protein
RA	5,799,626	C→T	7.4%	V79V (GTG→GTA)	PP_5077 ←	hypothetical protein
RA	5,805,968	G→A	5.7%	G186D (GGC→GAC)	mrcA →	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase
RA	5,807,984	A→G	11.4%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,985	T→C	11.2%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,986	G→A	11.3%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,987	C→T	11.4%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,810,366	T→A	6.0%	K76M (AAG→ATG)	rpmE ←	50S ribosomal protein L31
RA	5,822,596	A→G	8.1%	E42G (GAA→GGA)	rdgB →	dITP/XTP pyrophosphatase
RA	5,839,686	T→A	6.2%	intergenic (+63/+40)	yheT → / ← sseA	putative hydrolase/3‑mercaptopyruvate sulfurtransferase
RA	5,871,628	A→G	6.6%	L342P (CTC→CCC) ‡	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,871,629	G→C	6.7%	L342V (CTC→GTC) ‡	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,871,634	G→C	7.2%	A340G (GCC→GGC) ‡	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,871,635	C→T	7.2%	A340T (GCC→ACC) ‡	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,882,177	G→C	5.7%	L246L (CTG→CTC)	serA →	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase
RA	5,884,762	T→A	6.9%	D126V (GAT→GTT)	PP_5159 ←	hypothetical protein
RA	5,887,056	T→G	5.8%	intergenic (‑41/‑89)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,887,059	C→T	5.8%	intergenic (‑44/‑86)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,887,060	G→C	5.9%	intergenic (‑45/‑85)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,887,064	C→A	6.0%	intergenic (‑49/‑81)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,887,077	A→G	5.1%	intergenic (‑62/‑68)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,890,599	T→G	7.0%	F752V (TTC→GTC)	PP_5164 →	penicillin amidase family protein
RA	5,890,791	A→C	6.2%	intergenic (+79/+41)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,890,792	A→T	6.1%	intergenic (+80/+40)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,890,793	G→T	6.2%	intergenic (+81/+39)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,897,770	A→G	12.9%	intergenic (‑170/+64)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,903,164	G→T	11.8%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,165	A→C	20.0%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,914,124	C→T	8.3%	intergenic (+16/+137)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,126	C→G	7.7%	intergenic (+18/+135)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,128	A→G	8.1%	intergenic (+20/+133)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,918,860	Δ1 bp	5.9%	coding (16/471 nt)	PP_5188 ←	AsnC/Lrp family transcriptional regulator
RA	5,950,984	C→A	10.7%	R658L (CGT→CTT)	ppk ←	polyphosphate kinase
RA	5,959,995	A→T	7.8%	noncoding (74/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,959,996	A→T	7.8%	noncoding (73/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,963,846	T→G	10.4%	Y216D (TAT→GAT)	PP_5229 →	hypothetical protein
RA	5,963,851	C→A	9.2%	I217I (ATC→ATA)	PP_5229 →	hypothetical protein
RA	5,965,573	C→T	8.0%	intergenic (+71/+29)	had → / ← PP_5232	(S)‑2‑haloacid dehalogenase/hypothetical protein
RA	5,966,332	A→T	6.3%	intergenic (‑401/+29)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,966,333	A→T	7.6%	intergenic (‑402/+28)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,972,279	C→T	8.3%	A22A (GCC→GCT)	PP_5238 →	hypothetical protein
RA	5,972,776	C→T	9.3%	T22M (ACG→ATG)	PP_5725 →	hypothetical protein
RA	5,977,516	G→A	5.3%	L439L (TTG→TTA)	yifB →	ATP‑dependent chelatase
RA	5,980,171	T→C	9.0%	A272A (GCT→GCC)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,980,179	A→G	10.4%	Q275R (CAG→CGG) ‡	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,980,180	G→C	10.3%	Q275H (CAG→CAC) ‡	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,980,181	C→T	9.0%	R276W (CGG→TGG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,980,189	G→A	7.3%	W278* (TGG→TGA)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,988,809	G→A	25.3%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	24.0%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	24.9%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	24.7%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	24.9%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	25.2%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	25.2%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	27.0%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	27.6%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	28.4%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	29.3%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	28.6%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	22.3%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	28.4%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	29.6%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	27.6%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	32.4%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,994,755	Δ1 bp	8.2%	coding (1482/1599 nt)	PP_5251 →	transporter
RA	5,994,761	G→C	10.2%	V496V (GTG→GTC)	PP_5251 →	transporter
RA	5,994,765:1	+G	11.3%	coding (1492/1599 nt)	PP_5251 →	transporter
RA	5,997,189:1	+G	8.7%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	5,997,194	Δ1 bp	8.7%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,023,159	G→A	6.6%	intergenic (+74/+70)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,023,160	T→C	6.5%	intergenic (+75/+69)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,031,748	T→A	8.2%	I201N (ATC→AAC)	dppA‑IV →	dipeptide transport protein
RA	6,031,753	A→C	8.6%	T203P (ACC→CCC) ‡	dppA‑IV →	dipeptide transport protein
RA	6,031,755	C→G	8.6%	T203T (ACC→ACG) ‡	dppA‑IV →	dipeptide transport protein
RA	6,031,757	G→T	8.5%	G204V (GGG→GTG)	dppA‑IV →	dipeptide transport protein
RA	6,031,762	T→A	9.0%	F206I (TTC→ATC)	dppA‑IV →	dipeptide transport protein
RA	6,032,788	Δ1 bp	6.8%	intergenic (+52/+84)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,032,795:1	+G	6.8%	intergenic (+59/+77)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,032,797	T→C	7.3%	intergenic (+61/+75)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,032,800	A→G	7.4%	intergenic (+64/+72)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,036,522	A→G	7.1%	E351G (GAG→GGG)	algC →	phosphomannomutase/phosphoglucomutase
RA	6,036,527	C→T	7.3%	L353F (CTC→TTC)	algC →	phosphomannomutase/phosphoglucomutase
RA	6,044,240	A→G	9.1%	S350S (AGT→AGC)	PP_5297 ←	amino acid transporter
RA	6,044,249	C→T	10.7%	V347V (GTG→GTA)	PP_5297 ←	amino acid transporter
RA	6,049,292	G→A	6.3%	V52M (GTG→ATG) ‡	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,049,293	T→C	6.3%	V52A (GTG→GCG) ‡	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,051,668	C→A	11.5%	intergenic (+17/‑40)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,051,669	C→G	12.0%	intergenic (+18/‑39)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,051,670	T→G	11.8%	intergenic (+19/‑38)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
JC	6,056,667	Δ6 bp	100%	coding (794‑799/927 nt)	oxyR →	oxidative and nitrosative stress transcriptional dual regulator
RA	6,073,600	T→C	8.1%	D219G (GAC→GGC)	PP_5327 ←	phosphate ABC transporter permease
RA	6,080,145	A→T	5.2%	Q30L (CAG→CTG)	PP_5332 →	hypothetical protein
RA	6,080,988	T→A	10.4%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,080,989	T→A	10.1%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,085,264	A→T	10.4%	E125V (GAG→GTG)	aspA →	aspartate ammonia‑lyase
RA	6,085,269	A→C	10.6%	M127L (ATG→CTG) ‡	aspA →	aspartate ammonia‑lyase
RA	6,085,270	T→A	10.6%	M127K (ATG→AAG) ‡	aspA →	aspartate ammonia‑lyase
RA	6,085,271	G→T	13.8%	M127I (ATG→ATT) ‡	aspA →	aspartate ammonia‑lyase
RA	6,085,276	A→T	14.8%	H129L (CAC→CTC)	aspA →	aspartate ammonia‑lyase
RA	6,085,448	C→T	6.4%	F186F (TTC→TTT)	aspA →	aspartate ammonia‑lyase
RA	6,087,362	A→C	5.7%	Q295P (CAG→CCG)	oruR →	ornithine utilization transcriptional regulator
RA	6,092,856	C→G	8.3%	R62R (CGC→CGG)	PP_5345 →	acetyltransferase
RA	6,100,529	C→T	6.6%	G451G (GGC→GGT)	zwf →	glucose 6‑phosphate 1‑dehydrogenase
RA	6,127,162	C→G	8.9%	V241V (GTG→GTC) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,127,163	A→T	7.3%	V241E (GTG→GAG) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,127,164	C→G	7.2%	V241L (GTG→CTG) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,173,231	T→G	6.0%	intergenic (‑150/+40)	PP_5410 ← / ← glmU	DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,173,233	A→G	6.1%	intergenic (‑152/+38)	PP_5410 ← / ← glmU	DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,173,234	C→A	6.2%	intergenic (‑153/+37)	PP_5410 ← / ← glmU	DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,180,012	C→T	6.4%	R36H (CGC→CAC)	atpF ←	ATP synthase subunit b

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171353–172969	176348–172972	4–4996	19 [17]	[18] 19	PP_16SA–[PP_5SA]	PP_16SA,PP_23SA,[PP_5SA]
*	*	÷	NC_002947	176658–178399	181700–178402	4–5043	19 [17]	[18] 19	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]
*	*	÷	NC_002947	2038185	2038382	198	19 [18]	[18] 20	[rffE]	[rffE]
*	*	÷	NC_002947	2837026	2837232	207	19 [17]	[18] 19	[sad‑I]–[PP_2489]	[sad‑I],[PP_2489]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	38445 =	62 (1.230)	5 (0.100)	3/246	NT	8.7%	coding (185/984 nt)	PP_0034	bactoprenol glycosyl‑transferase
	?	NC_002947	38482 =	46 (0.960)					coding (148/984 nt)	PP_0034	bactoprenol glycosyl‑transferase
*	?	NC_002947	= 63894	46 (0.910)	4 (0.080)	4/244	NT	7.4%	coding (822/888 nt)	PP_0055	transcriptional regulator
	?	NC_002947	= 63920	56 (1.180)					coding (796/888 nt)	PP_0055	transcriptional regulator
*	?	NC_002947	= 66103	58 (1.150)	3 (0.060)	3/246	NT	5.0%	coding (1161/1653 nt)	betA‑I	choline dehydrogenase
	?	NC_002947	= 66147	58 (1.210)					coding (1205/1653 nt)	betA‑I	choline dehydrogenase
*	?	NC_002947	82067 =	55 (1.090)	6 (0.130)	6/242	NT	11.6%	intergenic (+44/+84)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase
	?	NC_002947	82120 =	40 (0.850)					intergenic (+97/+31)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase
*	?	NC_002947	85515 =	61 (1.210)	3 (0.060)	3/244	NT	5.0%	coding (1203/1566 nt)	PP_0075	choline sulfate transporter
	?	NC_002947	85544 =	56 (1.180)					coding (1174/1566 nt)	PP_0075	choline sulfate transporter
*	?	NC_002947	= 100459	31 (0.620)	5 (0.110)	5/224	NT	13.9%	intergenic (‑51/+71)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	= 100507	35 (0.800)					intergenic (‑99/+23)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
*	?	NC_002947	135570 =	62 (1.230)	5 (0.100)	4/248	NT	7.8%	coding (1466/1938 nt)	PP_0129	GGDEF domain‑containing protein
	?	NC_002947	135606 =	58 (1.200)					coding (1502/1938 nt)	PP_0129	GGDEF domain‑containing protein
*	?	NC_002947	= 136826	65 (1.290)	5 (0.100)	4/248	NT	7.0%	coding (711/789 nt)	amiD	1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase
	?	NC_002947	= 136859	70 (1.450)					coding (744/789 nt)	amiD	1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase
*	?	NC_002947	= 136939	52 (1.030)	4 (0.080)	4/244	NT	8.1%	intergenic (+35/‑161)	amiD/PP_0131	1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase/membrane‑anchored phosphodiesterase
	?	NC_002947	= 137001	41 (0.860)					intergenic (+97/‑99)	amiD/PP_0131	1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase/membrane‑anchored phosphodiesterase
*	?	NC_002947	= 159100	60 (1.190)	3 (0.060)	3/244	NT	5.4%	coding (1289/1956 nt)	PP_0149	hypothetical protein
	?	NC_002947	= 159166	49 (1.030)					coding (1223/1956 nt)	PP_0149	hypothetical protein
*	?	NC_002947	= 174906	NA (NA)	9 (0.190)	9/248	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	203404 =	53 (1.050)	6 (0.130)	6/244	NT	12.9%	coding (8910/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	215337 =	31 (0.650)					coding (20843/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	= 207274	NA (NA)	7 (0.140)	5/254	NT	11.3%	coding (12780/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 211940	56 (1.110)					coding (17446/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	210724 =	68 (1.350)	3 (0.060)	3/244	NT	5.9%	coding (16230/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	215337 =	31 (0.650)					coding (20843/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	222422 =	53 (1.050)	3 (0.060)	3/246	NT	5.9%	coding (277/1020 nt)	PP_0170	ABC transporter substrate‑binding protein
	?	NC_002947	222477 =	46 (0.960)					coding (332/1020 nt)	PP_0170	ABC transporter substrate‑binding protein
*	?	NC_002947	= 224656	55 (1.090)	3 (0.060)	3/250	NT	5.0%	coding (607/864 nt)	PP_0172	ABC transporter permease
	?	NC_002947	= 224689	60 (1.230)					coding (640/864 nt)	PP_0172	ABC transporter permease
*	?	NC_002947	= 232096	50 (0.990)	5 (0.110)	4/242	NT	9.5%	coding (195/1911 nt)	PP_0180	cytochrome c family protein
	?	NC_002947	= 232114	48 (1.020)					coding (213/1911 nt)	PP_0180	cytochrome c family protein
*	?	NC_002947	240111 =	50 (0.990)	4 (0.080)	4/244	NT	8.0%	coding (406/1128 nt)	PP_0188	uroporphyrin‑III C‑methyltransferase
	?	NC_002947	240158 =	45 (0.940)					coding (453/1128 nt)	PP_0188	uroporphyrin‑III C‑methyltransferase
*	?	NC_002947	= 250236	44 (0.870)	9 (0.190)	7/238	NT	18.4%	coding (967/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	= 250260	39 (0.840)					coding (943/1347 nt)	nfeD	membrane bound peptidase NefD
*	?	NC_002947	= 250473	60 (1.190)	4 (0.080)	4/246	NT	7.1%	coding (730/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	= 250522	48 (1.000)					coding (681/1347 nt)	nfeD	membrane bound peptidase NefD
*	?	NC_002947	= 251034	53 (1.050)	3 (0.060)	3/248	NT	5.6%	coding (169/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	= 251061	51 (1.050)					coding (142/1347 nt)	nfeD	membrane bound peptidase NefD
*	?	NC_002947	270958 =	63 (1.250)	6 (0.130)	6/244	NT	9.3%	coding (859/1896 nt)	PP_0218	sensory box protein
	?	NC_002947	271018 =	57 (1.200)					coding (919/1896 nt)	PP_0218	sensory box protein
*	?	NC_002947	= 286789	48 (0.950)	5 (0.100)	5/248	NT	9.2%	coding (334/789 nt)	tauB‑II	taurine ABC transporter ATP‑binding protein
	?	NC_002947	= 286832	53 (1.090)					coding (291/789 nt)	tauB‑II	taurine ABC transporter ATP‑binding protein
*	?	NC_002947	= 291024	65 (1.290)	3 (0.060)	3/248	NT	5.3%	coding (85/594 nt)	ssuE	NAD(P)H‑dependent FMN reductase subunit
	?	NC_002947	= 291076	44 (0.910)					coding (137/594 nt)	ssuE	NAD(P)H‑dependent FMN reductase subunit
*	?	NC_002947	= 296937	55 (1.090)	3 (0.060)	3/246	NT	5.7%	coding (1067/1578 nt)	gshA	glutamate‑‑cysteine ligase
	?	NC_002947	= 296962	47 (0.980)					coding (1042/1578 nt)	gshA	glutamate‑‑cysteine ligase
*	?	NC_002947	299241 =	64 (1.270)	4 (0.080)	4/248	NT	6.6%	coding (1885/2586 nt)	yhgF	transcriptional accessory protein
	?	NC_002947	299279 =	52 (1.070)					coding (1847/2586 nt)	yhgF	transcriptional accessory protein
*	?	NC_002947	= 306450	44 (0.870)	3 (0.060)	3/244	NT	6.1%	coding (365/900 nt)	hslO	molecular chaperone HslO
	?	NC_002947	= 306488	50 (1.050)					coding (403/900 nt)	hslO	molecular chaperone HslO
*	?	NC_002947	= 390955	41 (0.810)	3 (0.060)	3/244	NT	6.5%	coding (1229/3015 nt)	soxA	sarcosine oxidase subunit alpha
	?	NC_002947	= 391024	48 (1.010)					coding (1298/3015 nt)	soxA	sarcosine oxidase subunit alpha
*	?	NC_002947	409939 =	50 (0.990)	3 (0.060)	3/242	NT	5.6%	coding (725/2646 nt)	aceE	pyruvate dehydrogenase E1 component
	?	NC_002947	410027 =	54 (1.140)					coding (637/2646 nt)	aceE	pyruvate dehydrogenase E1 component
*	?	NC_002947	429747 =	35 (0.690)	3 (0.060)	3/244	NT	8.7%	coding (633/711 nt)	PP_0353	exonuclease
	?	NC_002947	429783 =	30 (0.630)					coding (597/711 nt)	PP_0353	exonuclease
*	?	NC_002947	= 437616	40 (0.790)	3 (0.060)	3/248	NT	6.5%	coding (744/1008 nt)	rdoA	serine/threonine protein kinase
	?	NC_002947	= 437674	48 (0.990)					coding (686/1008 nt)	rdoA	serine/threonine protein kinase
*	?	NC_002947	448271 =	71 (1.410)	4 (0.090)	4/240	NT	5.9%	coding (850/1284 nt)	PP_0369	diguanylate cyclase
	?	NC_002947	448347 =	61 (1.300)					coding (926/1284 nt)	PP_0369	diguanylate cyclase
*	?	NC_002947	448492 =	47 (0.930)	6 (0.120)	6/256	NT	12.0%	coding (1071/1284 nt)	PP_0369	diguanylate cyclase
	?	NC_002947	448533 =	41 (0.820)					coding (1112/1284 nt)	PP_0369	diguanylate cyclase
*	?	NC_002947	464173 =	62 (1.230)	4 (0.080)	4/242	NT	6.8%	coding (924/1683 nt)	davB	lysine 2‑monooxygenase
	?	NC_002947	464218 =	52 (1.100)					coding (879/1683 nt)	davB	lysine 2‑monooxygenase
*	?	NC_002947	= 467139	48 (0.950)	3 (0.060)	3/246	NT	6.8%	noncoding (58/77 nt)	PP_t71	tRNA‑Met
	?	NC_002947	= 467161	37 (0.770)					noncoding (36/77 nt)	PP_t71	tRNA‑Met
*	?	NC_002947	= 468712	63 (1.250)	4 (0.090)	4/238	NT	6.6%	coding (2245/3744 nt)	PP_0386	sensory box protein
	?	NC_002947	= 468784	56 (1.210)					coding (2173/3744 nt)	PP_0386	sensory box protein
*	?	NC_002947	469698 =	62 (1.230)	3 (0.060)	3/252	NT	5.2%	coding (1259/3744 nt)	PP_0386	sensory box protein
	?	NC_002947	469751 =	49 (1.000)					coding (1206/3744 nt)	PP_0386	sensory box protein
*	?	NC_002947	478639 =	62 (1.230)	3 (0.060)	3/240	NT	5.2%	coding (830/1107 nt)	cca	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478718 =	52 (1.110)					coding (751/1107 nt)	cca	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
*	?	NC_002947	505818 =	66 (1.310)	5 (0.100)	4/246	NT	7.4%	coding (312/1482 nt)	trpE	anthranilate synthase component 1
	?	NC_002947	505877 =	62 (1.290)					coding (371/1482 nt)	trpE	anthranilate synthase component 1
*	?	NC_002947	= 514033	56 (1.110)	3 (0.060)	3/246	NT	5.2%	intergenic (+67/+10)	yhfA/PP_0426	hypothetical protein/membrane protein
	?	NC_002947	= 514053	56 (1.170)					coding (1031/1041 nt)	PP_0426	membrane protein
*	?	NC_002947	516248 =	54 (1.070)	3 (0.060)	3/244	NT	5.1%	coding (744/783 nt)	PP_0429	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	516323 =	60 (1.260)					coding (669/783 nt)	PP_0429	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	526312 =	NA (NA)	6 (0.120)	6/248	NT	NA	noncoding (1364/1522 nt)	PP_16SC	16S ribosomal RNA
	?	NC_002947	526334 =	NA (NA)					noncoding (1386/1522 nt)	PP_16SC	16S ribosomal RNA
*	?	NC_002947	= 535620	56 (1.110)	4 (0.080)	3/242	NT	6.7%	coding (55/696 nt)	rplA	50S ribosomal protein L1
	?	NC_002947	= 535662	59 (1.250)					coding (97/696 nt)	rplA	50S ribosomal protein L1
*	?	NC_002947	557898 =	49 (0.970)	3 (0.060)	3/244	NT	6.4%	coding (28/534 nt)	rplF	50S ribosomal protein L6
	?	NC_002947	557943 =	41 (0.860)					coding (73/534 nt)	rplF	50S ribosomal protein L6
*	?	NC_002947	572834 =	58 (1.150)	3 (0.060)	3/244	NT	5.4%	coding (256/1425 nt)	PP_0486	GntR family transcriptional regulator
	?	NC_002947	572884 =	51 (1.070)					coding (206/1425 nt)	PP_0486	GntR family transcriptional regulator
*	?	NC_002947	588318 =	58 (1.150)	4 (0.080)	4/244	NT	7.3%	coding (328/876 nt)	PP_0498	hypothetical protein
	?	NC_002947	588357 =	46 (0.970)					coding (289/876 nt)	PP_0498	hypothetical protein
*	?	NC_002947	597221 =	53 (1.050)	6 (0.120)	6/246	NT	11.2%	coding (225/582 nt)	PP_0508	hypothetical protein
	?	NC_002947	597257 =	45 (0.940)					coding (189/582 nt)	PP_0508	hypothetical protein
*	?	NC_002947	615051 =	73 (1.450)	4 (0.080)	4/246	NT	5.2%	coding (196/888 nt)	ispA	farnesyl diphosphate synthase
	?	NC_002947	615099 =	76 (1.580)					coding (148/888 nt)	ispA	farnesyl diphosphate synthase
*	?	NC_002947	= 643149	41 (0.810)	4 (0.080)	4/250	NT	8.3%	coding (857/1023 nt)	acoB	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit beta
	?	NC_002947	= 643188	49 (1.000)					coding (818/1023 nt)	acoB	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit beta
*	?	NC_002947	651194 =	67 (1.330)	4 (0.080)	4/250	NT	6.0%	coding (1470/1773 nt)	dsbD‑I	thiol/disulfide interchange protein 1
	?	NC_002947	651233 =	60 (1.230)					coding (1431/1773 nt)	dsbD‑I	thiol/disulfide interchange protein 1
*	?	NC_002947	669376 =	63 (1.250)	6 (0.130)	6/240	NT	9.9%	coding (818/2355 nt)	pbpC	peptidoglycan glycosyltransferase
	?	NC_002947	669419 =	50 (1.070)					coding (861/2355 nt)	pbpC	peptidoglycan glycosyltransferase
*	?	NC_002947	= 673990	46 (0.910)	3 (0.060)	3/244	NT	6.6%	coding (119/471 nt)	PP_0575	membrane protein
	?	NC_002947	= 674026	41 (0.860)					coding (83/471 nt)	PP_0575	membrane protein
*	?	NC_002947	= 693275	39 (0.770)	3 (0.060)	3/242	NT	7.5%	coding (767/918 nt)	PP_0595	LysR family transcriptional regulator
	?	NC_002947	= 693320	37 (0.780)					coding (722/918 nt)	PP_0595	LysR family transcriptional regulator
*	?	NC_002947	= 731541	51 (1.010)	3 (0.060)	3/246	NT	5.8%	coding (1081/2565 nt)	clpB	chaperone protein ClpB
	?	NC_002947	= 731561	49 (1.020)					coding (1101/2565 nt)	clpB	chaperone protein ClpB
*	?	NC_002947	= 741869	NA (NA)	10 (0.210)	6/246	NT	NA	intergenic (+469/‑31)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	= 741902	NA (NA)					coding (3/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	742915 =	NA (NA)	4 (0.080)	4/246	NT	NA	coding (1016/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	742945 =	NA (NA)					coding (1046/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	= 743324	NA (NA)	4 (0.080)	4/252	NT	NA	intergenic (+3/+271)	PP_0635/PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
	?	NC_002947	= 743350	NA (NA)					intergenic (+29/+245)	PP_0635/PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
*	?	NC_002947	746753 =	NA (NA)	9 (0.190)	5/242	NT	NA	coding (121/357 nt)	PP_0638	transposase
	?	NC_002947	746788 =	NA (NA)					coding (86/357 nt)	PP_0638	transposase
*	?	NC_002947	= 750249	44 (0.870)	3 (0.060)	3/242	NT	6.3%	coding (615/1185 nt)	PP_0640	hypothetical protein
	?	NC_002947	= 750274	48 (1.020)					coding (590/1185 nt)	PP_0640	hypothetical protein
*	?	NC_002947	775904 =	52 (1.030)	4 (0.080)	4/248	NT	7.8%	coding (10/966 nt)	PP_0668	transmembrane sensor
	?	NC_002947	775968 =	44 (0.910)					coding (74/966 nt)	PP_0668	transmembrane sensor
*	?	NC_002947	= 822159	35 (0.690)	4 (0.080)	4/248	NT	9.6%	coding (1530/2412 nt)	PP_0707	hypothetical protein
	?	NC_002947	= 822215	42 (0.870)					coding (1586/2412 nt)	PP_0707	hypothetical protein
*	?	NC_002947	= 835069	67 (1.330)	4 (0.080)	3/248	NT	6.3%	coding (1010/1713 nt)	PP_0718	sulfate transporter
	?	NC_002947	= 835104	55 (1.140)					coding (975/1713 nt)	PP_0718	sulfate transporter
*	?	NC_002947	= 840424	52 (1.030)	4 (0.080)	4/248	NT	7.5%	coding (278/861 nt)	ispE	4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol kinase
	?	NC_002947	= 840460	49 (1.010)					coding (242/861 nt)	ispE	4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol kinase
*	?	NC_002947	877211 =	51 (1.010)	4 (0.080)	4/244	NT	7.2%	intergenic (‑53/+2)	rsmC/hprA	16S rRNA methyltransferase/glycerate dehydrogenase
	?	NC_002947	877271 =	55 (1.150)					coding (908/966 nt)	hprA	glycerate dehydrogenase
*	?	NC_002947	877664 =	48 (0.950)	5 (0.100)	3/246	NT	10.1%	coding (515/966 nt)	hprA	glycerate dehydrogenase
	?	NC_002947	877716 =	43 (0.900)					coding (463/966 nt)	hprA	glycerate dehydrogenase
*	?	NC_002947	884164 =	31 (0.620)	4 (0.080)	4/248	NT	11.1%	coding (75/2718 nt)	PP_0767	LuxR family transcriptional regulator
	?	NC_002947	884199 =	34 (0.700)					coding (110/2718 nt)	PP_0767	LuxR family transcriptional regulator
*	?	NC_002947	= 896121	59 (1.170)	3 (0.060)	3/250	NT	5.8%	coding (294/1191 nt)	PP_0778	group 1 family glycosyl transferase
	?	NC_002947	= 896180	40 (0.820)					coding (235/1191 nt)	PP_0778	group 1 family glycosyl transferase
*	?	NC_002947	= 905632	60 (1.190)	4 (0.080)	4/242	NT	6.3%	coding (1891/2160 nt)	PP_0788	hypothetical protein
	?	NC_002947	= 905696	62 (1.310)					coding (1955/2160 nt)	PP_0788	hypothetical protein
*	?	NC_002947	911199 =	67 (1.330)	6 (0.120)	5/248	NT	9.1%	coding (1707/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
	?	NC_002947	911245 =	55 (1.140)					coding (1753/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
*	?	NC_002947	923508 =	39 (0.770)	3 (0.060)	3/246	NT	7.3%	coding (1685/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein
	?	NC_002947	923559 =	39 (0.810)					coding (1634/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein
*	?	NC_002947	= 942243	49 (0.970)	3 (0.060)	3/244	NT	5.8%	coding (3379/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 942267	52 (1.090)					coding (3355/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	974820 =	56 (1.110)	4 (0.090)	4/234	NT	8.4%	coding (212/543 nt)	ycfJ	flagella biosyntheis regulator
	?	NC_002947	974890 =	36 (0.790)					coding (282/543 nt)	ycfJ	flagella biosyntheis regulator
*	?	NC_002947	995878 =	62 (1.230)	5 (0.100)	4/246	NT	7.5%	coding (1718/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
	?	NC_002947	995921 =	65 (1.350)					coding (1675/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
*	?	NC_002947	= 1068092	63 (1.250)	6 (0.120)	6/250	NT	9.3%	coding (258/948 nt)	PP_0926	membrane protein
	?	NC_002947	= 1068131	56 (1.150)					coding (297/948 nt)	PP_0926	membrane protein
*	?	NC_002947	1114870 =	54 (1.070)	4 (0.100)	4/208	NT	10.6%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114946 =	24 (0.590)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	1136258 =	66 (1.310)	3 (0.060)	3/244	NT	5.2%	coding (717/1509 nt)	PP_0997	sigma‑54 dependent transcriptional regulator/sensory box protein
	?	NC_002947	1136328 =	48 (1.010)					coding (647/1509 nt)	PP_0997	sigma‑54 dependent transcriptional regulator/sensory box protein
*	?	NC_002947	= 1188365	55 (1.090)	3 (0.060)	3/240	NT	5.4%	coding (3570/3900 nt)	purL	phosphoribosylformylglycinamidine synthase
	?	NC_002947	= 1188401	53 (1.130)					coding (3606/3900 nt)	purL	phosphoribosylformylglycinamidine synthase
*	?	NC_002947	= 1190854	57 (1.130)	3 (0.060)	3/248	NT	5.1%	coding (376/966 nt)	xcpX	type II secretion system protein K
	?	NC_002947	= 1190882	58 (1.200)					coding (404/966 nt)	xcpX	type II secretion system protein K
*	?	NC_002947	1206555 =	55 (1.090)	3 (0.060)	3/246	NT	5.9%	coding (2446/3150 nt)	PP_1058	hypothetical protein
	?	NC_002947	1206594 =	43 (0.900)					coding (2407/3150 nt)	PP_1058	hypothetical protein
*	?	NC_002947	1215888 =	58 (1.150)	4 (0.080)	4/246	NT	7.0%	coding (1071/4305 nt)	PP_1061	ATP‑dependent DNA helicase
	?	NC_002947	1215925 =	51 (1.060)					coding (1034/4305 nt)	PP_1061	ATP‑dependent DNA helicase
*	?	NC_002947	= 1248689	42 (0.830)	4 (0.080)	3/246	NT	9.4%	coding (49/483 nt)	PP_1089	hypothetical protein
	?	NC_002947	= 1248709	37 (0.770)					coding (29/483 nt)	PP_1089	hypothetical protein
*	?	NC_002947	1257820 =	72 (1.430)	5 (0.110)	4/238	NT	7.1%	coding (363/567 nt)	dcd	deoxycytidine triphosphate deaminase
	?	NC_002947	1257866 =	64 (1.380)					coding (409/567 nt)	dcd	deoxycytidine triphosphate deaminase
*	?	NC_002947	= 1273264	35 (0.690)	3 (0.070)	3/228	NT	7.6%	intergenic (+55/+113)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	= 1273323	42 (0.940)					intergenic (+114/+54)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
*	?	NC_002947	1296784 =	NA (NA)	3 (0.060)	3/244	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296822 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase
*	?	NC_002947	1317107 =	62 (1.230)	4 (0.080)	4/248	NT	6.3%	coding (525/1989 nt)	PP_1150	membrane protein
	?	NC_002947	1317150 =	59 (1.220)					coding (568/1989 nt)	PP_1150	membrane protein
*	?	NC_002947	= 1400633	44 (0.870)	4 (0.080)	4/244	NT	8.1%	coding (603/807 nt)	ybgF	TolQRA transport system periplasmic protein
	?	NC_002947	= 1400657	49 (1.030)					coding (627/807 nt)	ybgF	TolQRA transport system periplasmic protein
*	?	NC_002947	1431709 =	50 (0.990)	4 (0.080)	4/246	NT	7.9%	coding (163/336 nt)	PP_1253	ArsR family transcriptional regulator
	?	NC_002947	1431746 =	46 (0.960)					coding (126/336 nt)	PP_1253	ArsR family transcriptional regulator
*	?	NC_002947	1436010 =	63 (1.250)	5 (0.100)	5/258	NT	7.9%	intergenic (‑47/+106)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	1436103 =	53 (1.050)					intergenic (‑140/+13)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
*	?	NC_002947	1460799 =	45 (0.890)	4 (0.080)	4/248	NT	7.8%	coding (666/1167 nt)	algJ	alginate O‑acetylase AlgJ
	?	NC_002947	1460870 =	51 (1.050)					coding (595/1167 nt)	algJ	alginate O‑acetylase AlgJ
*	?	NC_002947	= 1465754	67 (1.330)	4 (0.080)	4/244	NT	6.6%	coding (1437/1560 nt)	algG	poly(beta‑D‑mannuronate) C5 epimerase
	?	NC_002947	= 1465798	49 (1.030)					coding (1393/1560 nt)	algG	poly(beta‑D‑mannuronate) C5 epimerase
*	?	NC_002947	1494705 =	39 (0.770)	4 (0.080)	4/246	NT	9.4%	coding (166/2277 nt)	PP_1306	Pyocin S‑type killer domain‑containing protein
	?	NC_002947	1494745 =	40 (0.830)					coding (126/2277 nt)	PP_1306	Pyocin S‑type killer domain‑containing protein
*	?	NC_002947	1507992 =	33 (0.660)	3 (0.060)	3/248	NT	8.5%	coding (393/462 nt)	sspB	ClpXP protease specificity‑enhancing factor
	?	NC_002947	1508041 =	33 (0.680)					coding (442/462 nt)	sspB	ClpXP protease specificity‑enhancing factor
*	?	NC_002947	= 1520999	42 (0.830)	5 (0.100)	4/244	NT	11.1%	coding (256/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	NC_002947	= 1521021	40 (0.840)					coding (278/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
*	?	NC_002947	1540684 =	53 (1.050)	6 (0.130)	5/244	NT	10.3%	coding (841/918 nt)	panE	2‑dehydropantoate 2‑reductase
	?	NC_002947	1540718 =	54 (1.130)					coding (807/918 nt)	panE	2‑dehydropantoate 2‑reductase
*	?	NC_002947	= 1543781	34 (0.680)	3 (0.060)	3/246	NT	8.5%	coding (585/1245 nt)	mdfA	multidrug MFS transporter
	?	NC_002947	= 1543810	32 (0.670)					coding (614/1245 nt)	mdfA	multidrug MFS transporter
*	?	NC_002947	1558468 =	53 (1.050)	5 (0.110)	5/242	NT	10.0%	coding (433/732 nt)	PP_1369	hypothetical protein
	?	NC_002947	1558538 =	40 (0.850)					coding (363/732 nt)	PP_1369	hypothetical protein
*	?	NC_002947	= 1569612	48 (0.950)	3 (0.060)	3/248	NT	5.5%	coding (423/1203 nt)	pcaF‑I	beta‑ketoadipyl‑CoA thiolase
	?	NC_002947	= 1569671	56 (1.160)					coding (482/1203 nt)	pcaF‑I	beta‑ketoadipyl‑CoA thiolase
*	?	NC_002947	1574617 =	58 (1.150)	4 (0.080)	4/244	NT	6.8%	coding (398/525 nt)	pcaP	porin
	?	NC_002947	1574656 =	54 (1.130)					coding (359/525 nt)	pcaP	porin
*	?	NC_002947	1580094 =	44 (0.870)	4 (0.080)	4/244	NT	9.2%	coding (1303/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	1580151 =	37 (0.780)					coding (1246/3153 nt)	ttgB	efflux pump membrane protein TtgB
*	?	NC_002947	= 1585631	58 (1.150)	4 (0.080)	4/244	NT	6.9%	coding (243/876 nt)	PP_1389	oxaloacetate decarboxylase
	?	NC_002947	= 1585659	53 (1.110)					coding (271/876 nt)	PP_1389	oxaloacetate decarboxylase
*	?	NC_002947	= 1594513	53 (1.050)	3 (0.060)	3/244	NT	5.9%	coding (910/1320 nt)	kgtP	alpha‑ketoglutarate permease
	?	NC_002947	= 1594561	45 (0.940)					coding (862/1320 nt)	kgtP	alpha‑ketoglutarate permease
*	?	NC_002947	= 1598537	60 (1.190)	5 (0.100)	4/248	NT	8.9%	coding (225/1758 nt)	dctB	C4‑dicarboxylate transport sensor protein
	?	NC_002947	= 1598580	45 (0.930)					coding (182/1758 nt)	dctB	C4‑dicarboxylate transport sensor protein
*	?	NC_002947	= 1616849	38 (0.750)	6 (0.120)	4/246	NT	14.2%	coding (410/1515 nt)	PP_1416	tricarboxylate transport protein TctA
	?	NC_002947	= 1616879	36 (0.750)					coding (380/1515 nt)	PP_1416	tricarboxylate transport protein TctA
*	?	NC_002947	= 1636413	49 (0.970)	4 (0.080)	4/242	NT	7.7%	coding (590/684 nt)	recO	DNA repair protein RecO
	?	NC_002947	= 1636437	50 (1.060)					coding (614/684 nt)	recO	DNA repair protein RecO
*	?	NC_002947	1650786 =	47 (0.930)	3 (0.060)	3/248	NT	5.8%	coding (274/2043 nt)	PP_1446	TonB‑dependent receptor
	?	NC_002947	1650821 =	52 (1.070)					coding (239/2043 nt)	PP_1446	TonB‑dependent receptor
*	?	NC_002947	= 1673146	61 (1.210)	4 (0.080)	4/248	NT	6.5%	coding (190/897 nt)	xerD	tyrosine recombinase XerD
	?	NC_002947	= 1673174	56 (1.160)					coding (218/897 nt)	xerD	tyrosine recombinase XerD
*	?	NC_002947	1675114 =	59 (1.170)	3 (0.060)	3/244	NT	5.2%	coding (281/1305 nt)	hom	homoserine dehydrogenase
	?	NC_002947	1675157 =	54 (1.130)					coding (324/1305 nt)	hom	homoserine dehydrogenase
*	?	NC_002947	= 1695804	72 (1.430)	4 (0.080)	4/248	NT	5.4%	coding (481/648 nt)	PP_1491	CheW domain‑containing protein
	?	NC_002947	= 1695829	72 (1.490)					coding (506/648 nt)	PP_1491	CheW domain‑containing protein
*	?	NC_002947	= 1724428	33 (0.660)	4 (0.080)	4/244	NT	9.3%	coding (3061/3066 nt)	PP_1517	RND family transporter
	?	NC_002947	= 1724498	47 (0.990)					coding (671/687 nt)	PP_1518	hypothetical protein
*	?	NC_002947	= 1731190	39 (0.770)	3 (0.080)	3/202	NT	8.0%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1731226	38 (0.960)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1736845	42 (0.830)	4 (0.080)	4/248	NT	9.0%	coding (795/1035 nt)	dapD	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
	?	NC_002947	= 1736867	41 (0.850)					coding (773/1035 nt)	dapD	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
*	?	NC_002947	1748689 =	48 (0.950)	5 (0.100)	5/246	NT	11.3%	intergenic (‑22/‑310)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
	?	NC_002947	1748732 =	33 (0.690)					intergenic (‑65/‑267)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1791570	59 (1.170)	3 (0.060)	3/252	NT	5.2%	coding (220/1359 nt)	rseP	regulatory intramembrane protein RIP
	?	NC_002947	= 1791610	51 (1.040)					coding (260/1359 nt)	rseP	regulatory intramembrane protein RIP
*	?	NC_002947	= 1792172	47 (0.930)	3 (0.060)	3/240	NT	7.3%	coding (822/1359 nt)	rseP	regulatory intramembrane protein RIP
	?	NC_002947	= 1792216	33 (0.700)					coding (866/1359 nt)	rseP	regulatory intramembrane protein RIP
*	?	NC_002947	= 1804378	52 (1.030)	3 (0.060)	3/244	NT	5.4%	coding (731/948 nt)	accA	acetyl‑CoA carboxylase carboxyltransferase subunit alpha
	?	NC_002947	= 1804405	55 (1.150)					coding (758/948 nt)	accA	acetyl‑CoA carboxylase carboxyltransferase subunit alpha
*	?	NC_002947	1818173 =	41 (0.810)	4 (0.080)	4/246	NT	8.0%	coding (315/789 nt)	PP_1622	M23B subfamily metallopeptidase
	?	NC_002947	1818241 =	53 (1.100)					coding (383/789 nt)	PP_1622	M23B subfamily metallopeptidase
*	?	NC_002947	= 1821299	NA (NA)	3 (0.060)	3/244	NT	NA	coding (1062/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2070624	NA (NA)					coding (998/1422 nt)	PP_1846	group II intron‑encoding maturase
*	?	NC_002947	1884706 =	70 (1.390)	4 (0.080)	3/248	NT	5.5%	coding (89/420 nt)	PP_1692	hypothetical protein
	?	NC_002947	1884739 =	70 (1.450)					coding (122/420 nt)	PP_1692	hypothetical protein
*	?	NC_002947	1898386 =	56 (1.110)	5 (0.100)	5/250	NT	8.4%	intergenic (‑175/‑43)	rdgC/PP_t15	recombination‑associated protein RdgC/tRNA‑Val
	?	NC_002947	1898420 =	NA (NA)					intergenic (‑209/‑9)	rdgC/PP_t15	recombination‑associated protein RdgC/tRNA‑Val
*	?	NC_002947	1907210 =	42 (0.830)	3 (0.060)	3/248	NT	6.7%	coding (529/951 nt)	PP_1707	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	1907243 =	43 (0.890)					coding (496/951 nt)	PP_1707	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	= 1935465	37 (0.730)	3 (0.060)	3/246	NT	8.1%	coding (730/936 nt)	htrB	lipid A biosynthesis lauroyl acyltransferase
	?	NC_002947	= 1935502	33 (0.690)					coding (767/936 nt)	htrB	lipid A biosynthesis lauroyl acyltransferase
*	?	NC_002947	= 1941523	58 (1.150)	4 (0.080)	4/244	NT	6.6%	coding (65/864 nt)	betX	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX
	?	NC_002947	= 1941539	59 (1.240)					coding (81/864 nt)	betX	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX
*	?	NC_002947	1942883 =	62 (1.230)	4 (0.080)	4/248	NT	6.4%	coding (49/1665 nt)	actP‑I	acetate permease
	?	NC_002947	1942926 =	58 (1.200)					coding (92/1665 nt)	actP‑I	acetate permease
*	?	NC_002947	= 2015671	44 (0.870)	3 (0.060)	3/248	NT	5.6%	coding (722/888 nt)	PP_1795	hypothetical protein
	?	NC_002947	= 2015702	58 (1.200)					coding (691/888 nt)	PP_1795	hypothetical protein
*	?	NC_002947	2033584 =	NA (NA)	4 (0.080)	4/244	NT	100%	coding (1065/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	2033613 =	0 (0.000)					coding (1094/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
*	?	NC_002947	2034885 =	48 (0.950)	5 (0.110)	5/242	NT	11.4%	intergenic (+701/+740)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein
	?	NC_002947	2034921 =	33 (0.700)					intergenic (+737/+704)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein
*	?	NC_002947	= 2050595	13 (0.260)	7 (0.190)	7/184	NT	34.8%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050631	17 (0.470)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	2051617 =	42 (0.830)	6 (0.120)	6/250	NT	12.9%	coding (62/591 nt)	PP_1826	isochorismatase family hydrolase
	?	NC_002947	2051652 =	40 (0.820)					coding (27/591 nt)	PP_1826	isochorismatase family hydrolase
*	?	NC_002947	2069690 =	NA (NA)	4 (0.080)	4/244	NT	NA	coding (64/1422 nt)	PP_1846	group II intron‑encoding maturase
	?	NC_002947	2069738 =	NA (NA)					coding (112/1422 nt)	PP_1846	group II intron‑encoding maturase
*	?	NC_002947	2071908 =	51 (1.010)	4 (0.080)	4/244	NT	7.4%	coding (1500/2133 nt)	PP_1847	TonB‑dependent ferric siderophore receptor
	?	NC_002947	2071943 =	52 (1.090)					coding (1465/2133 nt)	PP_1847	TonB‑dependent ferric siderophore receptor
*	?	NC_002947	2086080 =	NA (NA)	7 (0.140)	6/248	NT	NA	coding (195/1302 nt)	PP_1865	transposase
	?	NC_002947	2086120 =	NA (NA)					coding (235/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2086450	NA (NA)	14 (0.290)	10/246	NT	NA	coding (565/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086464	NA (NA)					coding (579/1302 nt)	PP_1865	transposase
*	?	NC_002947	2090812 =	60 (1.190)	6 (0.130)	5/244	NT	10.2%	coding (138/1680 nt)	deaD	ATP‑dependent DEAD‑box RNA helicase DeaD
	?	NC_002947	2090867 =	49 (1.030)					coding (193/1680 nt)	deaD	ATP‑dependent DEAD‑box RNA helicase DeaD
*	?	NC_002947	2101481 =	48 (0.950)	5 (0.110)	5/234	NT	10.7%	intergenic (+17/+59)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein
	?	NC_002947	2101525 =	40 (0.880)					intergenic (+61/+15)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein
*	?	NC_002947	= 2112063	49 (0.970)	5 (0.100)	5/246	NT	9.7%	coding (2223/4899 nt)	PP_1882	membrane protein
	?	NC_002947	= 2112086	46 (0.960)					coding (2200/4899 nt)	PP_1882	membrane protein
*	?	NC_002947	= 2126088	65 (1.290)	4 (0.080)	4/248	NT	6.9%	coding (1459/3873 nt)	PP_1887	hypothetical protein
	?	NC_002947	= 2126174	45 (0.930)					coding (1545/3873 nt)	PP_1887	hypothetical protein
*	?	NC_002947	2129661 =	44 (0.870)	6 (0.130)	6/244	NT	13.0%	intergenic (‑15/+42)	PP_1888/fimD	fimbrial protein/type I pili subunit FimD
	?	NC_002947	2129695 =	39 (0.820)					intergenic (‑49/+8)	PP_1888/fimD	fimbrial protein/type I pili subunit FimD
*	?	NC_002947	2145791 =	66 (1.310)	3 (0.060)	3/244	NT	5.2%	coding (145/465 nt)	etp	phosphotyrosine‑protein phosphatase
	?	NC_002947	2145828 =	46 (0.970)					coding (182/465 nt)	etp	phosphotyrosine‑protein phosphatase
*	?	NC_002947	2175086 =	45 (0.890)	4 (0.090)	4/238	NT	8.1%	coding (177/489 nt)	PP_1928	arsenate reductase
	?	NC_002947	2175143 =	49 (1.050)					coding (120/489 nt)	PP_1928	arsenate reductase
*	?	NC_002947	= 2209545	73 (1.450)	7 (0.140)	7/252	NT	9.5%	coding (861/948 nt)	PP_1952	metallo‑beta‑lactamase family protein
	?	NC_002947	= 2209582	62 (1.260)					coding (898/948 nt)	PP_1952	metallo‑beta‑lactamase family protein
*	?	NC_002947	2258145 =	21 (0.420)	6 (0.130)	4/242	NT	21.2%	intergenic (+200/‑192)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	NC_002947	2414745 =	25 (0.530)					intergenic (+287/‑58)	PP_2114/PP_2115	transposase/hypothetical protein
*	?	NC_002947	2278188 =	56 (1.110)	3 (0.060)	3/244	NT	5.7%	coding (392/1233 nt)	PP_2007	P‑47‑like protein
	?	NC_002947	2278231 =	46 (0.970)					coding (349/1233 nt)	PP_2007	P‑47‑like protein
*	?	NC_002947	2281454 =	54 (1.070)	3 (0.060)	3/238	NT	6.6%	coding (276/894 nt)	PP_2009	1‑aminocyclopropane‑1‑carboxylate deaminase
	?	NC_002947	2281504 =	35 (0.750)					coding (326/894 nt)	PP_2009	1‑aminocyclopropane‑1‑carboxylate deaminase
*	?	NC_002947	= 2295798	48 (0.950)	5 (0.120)	3/218	NT	9.9%	intergenic (+44/+89)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	= 4282188	50 (1.170)					coding (1042/1089 nt)	PP_3753	AraC family transcriptional regulator
*	?	NC_002947	2301453 =	0 (0.000)	43 (0.870)	36/252	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	37 (0.750)	33/254	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 2373103	48 (0.950)	4 (0.080)	4/246	NT	7.7%	intergenic (‑125/‑67)	PP_2081/ppsA	phosphoenolpyruvate synthase regulatory protein/phosphoenolpyruvate synthetase
	?	NC_002947	= 2373123	50 (1.040)					intergenic (‑145/‑47)	PP_2081/ppsA	phosphoenolpyruvate synthase regulatory protein/phosphoenolpyruvate synthetase
*	?	NC_002947	2385305 =	41 (0.810)	3 (0.060)	3/248	NT	7.4%	coding (573/576 nt)	PP_2093	two‑component system response regulator NasT
	?	NC_002947	2385341 =	36 (0.740)					coding (537/576 nt)	PP_2093	two‑component system response regulator NasT
*	?	NC_002947	= 2401012	59 (1.170)	3 (0.060)	3/248	NT	5.7%	coding (877/1332 nt)	dgt	deoxyguanosinetriphosphate triphosphohydrolase‑like protein
	?	NC_002947	= 2401042	43 (0.890)					coding (847/1332 nt)	dgt	deoxyguanosinetriphosphate triphosphohydrolase‑like protein
*	?	NC_002947	= 2402399	46 (0.910)	4 (0.080)	4/248	NT	7.6%	coding (339/375 nt)	PP_2104	membrane protein
	?	NC_002947	= 2402430	53 (1.090)					coding (308/375 nt)	PP_2104	membrane protein
*	?	NC_002947	= 2418415	48 (0.950)	4 (0.080)	4/246	NT	7.6%	coding (1450/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 2418467	51 (1.060)					coding (1502/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein
*	?	NC_002947	= 2420112	58 (1.150)	4 (0.080)	4/250	NT	6.4%	coding (1263/1668 nt)	ctpH	methyl‑accepting chemotaxis protein CtpH
	?	NC_002947	= 2420145	60 (1.230)					coding (1296/1668 nt)	ctpH	methyl‑accepting chemotaxis protein CtpH
*	?	NC_002947	2422944 =	51 (1.010)	5 (0.100)	4/248	NT	9.5%	coding (1232/1248 nt)	PP_2124	glycosyl transferase
	?	NC_002947	2422993 =	46 (0.950)					coding (1183/1248 nt)	PP_2124	glycosyl transferase
*	?	NC_002947	= 2435284	26 (0.520)	4 (0.090)	4/238	NT	22.9%	intergenic (+131/‑173)	PP_2133/PP_2134	hypothetical protein/transposase
	?	NC_002947	= 5756889	3 (0.060)					intergenic (+566/‑122)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
*	?	NC_002947	2468545 =	44 (0.870)	3 (0.060)	3/244	NT	6.5%	coding (378/564 nt)	PP_2162	phosphonoacetaldehyde phosphonohydrolase‑like protein
	?	NC_002947	2468600 =	45 (0.940)					coding (323/564 nt)	PP_2162	phosphonoacetaldehyde phosphonohydrolase‑like protein
*	?	NC_002947	2472102 =	35 (0.690)	3 (0.090)	3/180	NT	11.0%	intergenic (+6/+143)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2472226 =	24 (0.680)					intergenic (+130/+19)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
*	?	NC_002947	2501809 =	34 (0.680)	3 (0.060)	3/248	NT	8.5%	coding (248/1089 nt)	PP_2195	putrescine‑binding protein
	?	NC_002947	2501860 =	32 (0.660)					coding (299/1089 nt)	PP_2195	putrescine‑binding protein
*	?	NC_002947	= 2505333	30 (0.600)	4 (0.080)	4/244	NT	10.5%	coding (1120/1146 nt)	yliI	aldose sugar dehydrogenase
	?	NC_002947	= 2505360	40 (0.840)					intergenic (+1/‑41)	yliI/PP_2199	aldose sugar dehydrogenase/hypothetical protein
*	?	NC_002947	2505522 =	61 (1.210)	5 (0.100)	5/248	NT	8.1%	coding (122/1107 nt)	PP_2199	hypothetical protein
	?	NC_002947	2505569 =	55 (1.140)					coding (169/1107 nt)	PP_2199	hypothetical protein
*	?	NC_002947	= 2568619	49 (0.970)	4 (0.080)	4/246	NT	7.7%	coding (929/1050 nt)	PP_2252	hypothetical protein
	?	NC_002947	= 2568630	49 (1.020)					coding (918/1050 nt)	PP_2252	hypothetical protein
*	?	NC_002947	2580317 =	47 (0.930)	3 (0.060)	3/244	NT	6.2%	coding (633/1098 nt)	PP_2261	sugar ABC transporter ATP‑binding protein
	?	NC_002947	2580362 =	46 (0.970)					coding (678/1098 nt)	PP_2261	sugar ABC transporter ATP‑binding protein
*	?	NC_002947	2590427 =	42 (0.830)	5 (0.100)	5/248	NT	11.4%	coding (474/681 nt)	PP_2267	single‑stranded DNA‑binding protein
	?	NC_002947	2590465 =	37 (0.760)					coding (512/681 nt)	PP_2267	single‑stranded DNA‑binding protein
*	?	NC_002947	2619995 =	40 (0.790)	6 (0.120)	4/246	NT	14.6%	coding (535/1689 nt)	PP_2293	DNA maturase B
	?	NC_002947	2620031 =	32 (0.670)					coding (571/1689 nt)	PP_2293	DNA maturase B
*	?	NC_002947	2626963 =	58 (1.150)	4 (0.080)	4/246	NT	7.3%	coding (48/1332 nt)	tig	trigger factor
	?	NC_002947	2627010 =	46 (0.960)					coding (95/1332 nt)	tig	trigger factor
*	?	NC_002947	2650701 =	49 (0.970)	5 (0.100)	4/246	NT	9.1%	intergenic (‑77/‑103)	PP_mr32/PP_2323	P14 ncRNA/hypothetical protein
	?	NC_002947	2650737 =	53 (1.100)					intergenic (‑113/‑67)	PP_mr32/PP_2323	P14 ncRNA/hypothetical protein
*	?	NC_002947	= 2652179	50 (0.990)	3 (0.060)	3/250	NT	5.5%	coding (239/1113 nt)	aroF‑I	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
	?	NC_002947	= 2652217	54 (1.110)					coding (201/1113 nt)	aroF‑I	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
*	?	NC_002947	2671963 =	39 (0.770)	4 (0.080)	4/250	NT	8.4%	coding (355/2610 nt)	acnB	aconitate hydratase B
	?	NC_002947	2672016 =	50 (1.020)					coding (302/2610 nt)	acnB	aconitate hydratase B
*	?	NC_002947	2690807 =	39 (0.770)	3 (0.060)	3/246	NT	7.5%	coding (147/594 nt)	PP_2357	type I pili subunit CsuB
	?	NC_002947	2690853 =	37 (0.770)					coding (193/594 nt)	PP_2357	type I pili subunit CsuB
*	?	NC_002947	2727129 =	62 (1.230)	6 (0.130)	6/242	NT	9.7%	coding (193/627 nt)	PP_2388	LysE family transporter
	?	NC_002947	2727174 =	53 (1.120)					coding (148/627 nt)	PP_2388	LysE family transporter
*	?	NC_002947	= 2765752	36 (0.710)	3 (0.060)	3/252	NT	7.7%	coding (664/1161 nt)	PP_2419	membrane protein
	?	NC_002947	= 2765785	37 (0.750)					coding (631/1161 nt)	PP_2419	membrane protein
*	?	NC_002947	2769383 =	42 (0.830)	5 (0.110)	5/242	NT	11.7%	coding (302/552 nt)	PP_2421	acetyltransferase
	?	NC_002947	2769426 =	36 (0.760)					coding (259/552 nt)	PP_2421	acetyltransferase
*	?	NC_002947	= 2785510	44 (0.870)	3 (0.060)	3/240	NT	7.1%	coding (304/390 nt)	PP_5523	hypothetical protein
	?	NC_002947	= 2785556	38 (0.810)					coding (350/390 nt)	PP_5523	hypothetical protein
*	?	NC_002947	2795464 =	34 (0.680)	4 (0.080)	4/244	NT	10.8%	coding (824/1284 nt)	puuB	gamma‑glutamylputrescine oxidase
	?	NC_002947	2795529 =	34 (0.710)					coding (759/1284 nt)	puuB	gamma‑glutamylputrescine oxidase
*	?	NC_002947	2807533 =	41 (0.810)	3 (0.060)	3/244	NT	6.9%	coding (907/969 nt)	Nuh	ribonucleoside hydrolase
	?	NC_002947	2807569 =	42 (0.880)					coding (943/969 nt) coding (211/213 nt)	Nuh PP_2461	ribonucleoside hydrolase hypothetical protein
*	?	NC_002947	= 2840212	45 (0.890)	3 (0.060)	3/242	NT	6.5%	coding (370/678 nt)	PP_2491	ThiJ/PfpI family protein
	?	NC_002947	= 2840275	44 (0.930)					coding (307/678 nt)	PP_2491	ThiJ/PfpI family protein
*	?	NC_002947	= 2871438	30 (0.600)	3 (0.060)	3/244	NT	10.1%	coding (216/657 nt)	PP_2524	HD domain‑containing protein
	?	NC_002947	= 2871463	25 (0.520)					coding (241/657 nt)	PP_2524	HD domain‑containing protein
*	?	NC_002947	2873270 =	43 (0.850)	3 (0.060)	3/242	NT	7.4%	coding (50/474 nt)	cigR	membrane protein
	?	NC_002947	2873328 =	35 (0.740)					coding (108/474 nt)	cigR	membrane protein
*	?	NC_002947	= 3042377	41 (0.810)	4 (0.080)	4/250	NT	8.1%	coding (280/315 nt)	PP_5537	membrane protein
	?	NC_002947	= 3042402	51 (1.050)					coding (305/315 nt)	PP_5537	membrane protein
*	?	NC_002947	3051679 =	67 (1.330)	3 (0.060)	3/248	NT	5.5%	coding (379/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3051750 =	39 (0.810)					coding (450/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 3104284	55 (1.090)	3 (0.060)	3/248	NT	5.7%	coding (812/1365 nt)	PP_2714	sensor histidine kinase
	?	NC_002947	= 3104323	46 (0.950)					coding (851/1365 nt)	PP_2714	sensor histidine kinase
*	?	NC_002947	= 3106944	41 (0.810)	4 (0.080)	4/248	NT	9.2%	coding (404/1284 nt)	arsB‑II	arsenite/antimonite transporter
	?	NC_002947	= 3106975	40 (0.830)					coding (373/1284 nt)	arsB‑II	arsenite/antimonite transporter
*	?	NC_002947	= 3116213	42 (0.830)	4 (0.090)	4/240	NT	8.6%	coding (951/1527 nt)	PP_2732	hypothetical protein
	?	NC_002947	= 3116255	46 (0.980)					coding (993/1527 nt)	PP_2732	hypothetical protein
*	?	NC_002947	3117011 =	48 (0.950)	4 (0.090)	4/240	NT	8.2%	coding (384/489 nt)	PP_2733	membrane protein
	?	NC_002947	3117102 =	45 (0.960)					coding (293/489 nt)	PP_2733	membrane protein
*	?	NC_002947	= 3118247	62 (1.230)	3 (0.060)	3/246	NT	5.3%	coding (335/1188 nt)	cfa	cyclopropane‑fatty‑acyl‑phospholipid synthase
	?	NC_002947	= 3118286	49 (1.020)					coding (296/1188 nt)	cfa	cyclopropane‑fatty‑acyl‑phospholipid synthase
*	?	NC_002947	= 3129186	48 (0.950)	3 (0.060)	3/244	NT	6.3%	coding (433/1410 nt)	dmoA‑I	dimethyl‑sulfide monooxygenase
	?	NC_002947	= 3129217	44 (0.920)					coding (464/1410 nt)	dmoA‑I	dimethyl‑sulfide monooxygenase
*	?	NC_002947	= 3206141	43 (0.850)	3 (0.060)	3/246	NT	6.9%	coding (1445/1647 nt)	PP_2811	hypothetical protein
	?	NC_002947	= 3206165	40 (0.830)					coding (1469/1647 nt)	PP_2811	hypothetical protein
*	?	NC_002947	= 3274590	46 (0.910)	5 (0.100)	5/246	NT	10.9%	coding (348/885 nt)	eamA	O‑acetylserine/cysteine export transporter
	?	NC_002947	= 3274661	38 (0.790)					coding (419/885 nt)	eamA	O‑acetylserine/cysteine export transporter
*	?	NC_002947	3276813 =	56 (1.110)	5 (0.110)	5/236	NT	9.8%	intergenic (‑118/+165)	PP_2875/ampC	hypothetical protein/beta‑lactamase
	?	NC_002947	3276841 =	41 (0.890)					intergenic (‑146/+137)	PP_2875/ampC	hypothetical protein/beta‑lactamase
*	?	NC_002947	3346409 =	47 (0.930)	4 (0.080)	4/246	NT	8.5%	coding (91/1371 nt)	PP_2942	two‑component system response regulator
	?	NC_002947	3346465 =	41 (0.850)					coding (35/1371 nt)	PP_2942	two‑component system response regulator
*	?	NC_002947	3361090 =	51 (1.010)	5 (0.110)	4/238	NT	9.9%	coding (177/1581 nt)	PP_2956	ribosomal protein S6 modification protein‑like protein
	?	NC_002947	3361133 =	44 (0.950)					coding (134/1581 nt)	PP_2956	ribosomal protein S6 modification protein‑like protein
*	?	NC_002947	3377448 =	50 (0.990)	3 (0.060)	3/244	NT	6.2%	coding (568/906 nt)	tnpB	transposase subunit B
	?	NC_002947	3377486 =	43 (0.900)					coding (606/906 nt)	tnpB	transposase subunit B
*	?	NC_002947	3387764 =	62 (1.230)	3 (0.060)	3/242	NT	5.1%	coding (545/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	3387806 =	53 (1.120)					coding (587/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	= 3400726	33 (0.660)	3 (0.060)	3/244	NT	8.4%	coding (475/528 nt)	PP_3007	hypothetical protein
	?	NC_002947	= 3400778	34 (0.710)					coding (423/528 nt)	PP_3007	hypothetical protein
*	?	NC_002947	3424404 =	43 (0.850)	3 (0.060)	3/246	NT	6.2%	coding (355/363 nt)	PP_3039	hypothetical protein
	?	NC_002947	3424455 =	49 (1.020)					intergenic (+43/‑469)	PP_3039/PP_3040	hypothetical protein/holin
*	?	NC_002947	3443566 =	9 (0.180)	3 (0.060)	3/246	NT	19.0%	coding (2325/3270 nt)	PP_3062	tail length determination protein
	?	NC_002947	3443605 =	17 (0.350)					coding (2364/3270 nt)	PP_3062	tail length determination protein
*	?	NC_002947	3487360 =	65 (1.290)	5 (0.100)	5/248	NT	8.5%	coding (651/1344 nt)	PP_3093	hypothetical protein
	?	NC_002947	3487396 =	45 (0.930)					coding (615/1344 nt)	PP_3093	hypothetical protein
*	?	NC_002947	3490374 =	64 (1.270)	4 (0.080)	4/244	NT	6.5%	coding (1017/2637 nt)	clpV	protein ClpV1
	?	NC_002947	3490425 =	55 (1.150)					coding (966/2637 nt)	clpV	protein ClpV1
*	?	NC_002947	= 3522770	35 (0.690)	3 (0.060)	3/252	NT	6.9%	intergenic (+557/‑140)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	= 3522819	47 (0.960)					intergenic (+606/‑91)	PP_5584/PP_3113	hypothetical protein/transposase
*	?	NC_002947	3528136 =	39 (0.770)	3 (0.060)	3/244	NT	7.2%	coding (1347/1419 nt)	imuB	DNA repair DNA linked protein
	?	NC_002947	3528177 =	40 (0.840)					coding (1388/1419 nt)	imuB	DNA repair DNA linked protein
*	?	NC_002947	3538486 =	35 (0.690)	3 (0.060)	3/248	NT	9.0%	coding (308/1116 nt)	PP_5587	hypothetical protein
	?	NC_002947	3538528 =	27 (0.560)					coding (350/1116 nt)	PP_5587	hypothetical protein
*	?	NC_002947	3547416 =	45 (0.890)	4 (0.080)	4/246	NT	7.6%	coding (361/1377 nt)	PP_3132	polysaccharide transporter
	?	NC_002947	3547489 =	55 (1.150)					coding (434/1377 nt)	PP_3132	polysaccharide transporter
*	?	NC_002947	= 3562109	39 (0.770)	3 (0.060)	3/248	NT	7.5%	coding (423/822 nt)	PP_3145	hypothetical protein
	?	NC_002947	= 3562140	36 (0.740)					coding (392/822 nt)	PP_3145	hypothetical protein
*	?	NC_002947	= 3568272	44 (0.870)	3 (0.060)	3/244	NT	6.3%	coding (829/1998 nt)	PP_3150	hypothetical protein
	?	NC_002947	= 3568302	48 (1.010)					coding (859/1998 nt)	PP_3150	hypothetical protein
*	?	NC_002947	3577425 =	20 (0.400)	3 (0.070)	3/230	NT	11.4%	intergenic (+19/‑161)	PP_3157/PP_3158	inositol monophosphatase family protein/hypothetical protein
	?	NC_002947	3577480 =	29 (0.650)					intergenic (+74/‑106)	PP_3157/PP_3158	inositol monophosphatase family protein/hypothetical protein
*	?	NC_002947	= 3606080	44 (0.870)	5 (0.100)	5/246	NT	9.4%	coding (682/951 nt)	PP_3181	site‑specific recombinase
	?	NC_002947	= 3606131	54 (1.120)					coding (631/951 nt)	PP_3181	site‑specific recombinase
*	?	NC_002947	3623866 =	45 (0.890)	3 (0.060)	3/244	NT	7.5%	coding (187/1344 nt)	PP_3194	hypothetical protein
	?	NC_002947	3623927 =	31 (0.650)					coding (126/1344 nt)	PP_3194	hypothetical protein
*	?	NC_002947	3624077 =	43 (0.850)	4 (0.080)	4/246	NT	8.7%	intergenic (‑25/+148)	PP_3194/PP_3195	hypothetical protein/hypothetical protein
	?	NC_002947	3624114 =	43 (0.900)					intergenic (‑62/+111)	PP_3194/PP_3195	hypothetical protein/hypothetical protein
*	?	NC_002947	= 3647622	38 (0.750)	3 (0.060)	3/242	NT	8.5%	intergenic (‑559/‑95)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein
	?	NC_002947	= 3647672	29 (0.610)					intergenic (‑609/‑45)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein
*	?	NC_002947	= 3649513	46 (0.910)	3 (0.060)	3/248	NT	6.5%	intergenic (+990/+701)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase
	?	NC_002947	= 3649574	42 (0.870)					intergenic (+1051/+640)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase
*	?	NC_002947	3676017 =	43 (0.850)	3 (0.070)	3/230	NT	8.3%	intergenic (+24/+68)	PP_3240/PP_5592	hypothetical protein/hypothetical protein
	?	NC_002947	3676068 =	28 (0.620)					intergenic (+75/+17)	PP_3240/PP_5592	hypothetical protein/hypothetical protein
*	?	NC_002947	3705180 =	57 (1.130)	3 (0.060)	3/256	NT	5.1%	coding (822/2055 nt)	paaZ	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
	?	NC_002947	3705200 =	55 (1.100)					coding (802/2055 nt)	paaZ	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
*	?	NC_002947	= 3719175	51 (1.010)	3 (0.060)	3/246	NT	5.4%	coding (226/774 nt)	paaF	enoyl‑CoA hydratase/isomerase
	?	NC_002947	= 3719202	56 (1.170)					coding (199/774 nt)	paaF	enoyl‑CoA hydratase/isomerase
*	?	NC_002947	3725039 =	52 (1.030)	4 (0.080)	4/244	NT	7.5%	coding (609/927 nt)	PP_3290	universal stress protein family protein
	?	NC_002947	3725091 =	50 (1.050)					coding (661/927 nt)	PP_3290	universal stress protein family protein
*	?	NC_002947	= 3727148	29 (0.580)	4 (0.080)	4/248	NT	11.3%	coding (361/645 nt)	PP_3292	membrane protein
	?	NC_002947	= 3727189	35 (0.720)					coding (402/645 nt)	PP_3292	membrane protein
*	?	NC_002947	= 3728844	46 (0.910)	4 (0.080)	4/242	NT	8.2%	coding (715/891 nt)	PP_3294	universal stress protein family protein
	?	NC_002947	= 3728883	46 (0.970)					coding (754/891 nt)	PP_3294	universal stress protein family protein
*	?	NC_002947	3762035 =	61 (1.210)	4 (0.080)	4/248	NT	5.6%	coding (1383/2091 nt)	PP_3325	ferric siderophore receptor
	?	NC_002947	3762100 =	77 (1.590)					coding (1448/2091 nt)	PP_3325	ferric siderophore receptor
*	?	NC_002947	3762377 =	46 (0.910)	5 (0.100)	5/252	NT	10.1%	coding (1725/2091 nt)	PP_3325	ferric siderophore receptor
	?	NC_002947	3762439 =	44 (0.890)					coding (1787/2091 nt)	PP_3325	ferric siderophore receptor
*	?	NC_002947	= 3784144	42 (0.830)	3 (0.060)	3/240	NT	6.9%	coding (468/822 nt)	nikE	nickel ABC transporter ATP‑binding protein
	?	NC_002947	= 3784171	42 (0.900)					coding (495/822 nt)	nikE	nickel ABC transporter ATP‑binding protein
*	?	NC_002947	= 3792267	29 (0.580)	3 (0.060)	3/244	NT	8.5%	coding (1051/1755 nt)	PP_3354	acyl‑CoA dehydrogenase
	?	NC_002947	= 3792294	37 (0.780)					coding (1024/1755 nt)	PP_3354	acyl‑CoA dehydrogenase
*	?	NC_002947	3794274 =	36 (0.710)	3 (0.060)	3/246	NT	8.4%	coding (249/1191 nt)	PP_3355	beta‑ketothiolase
	?	NC_002947	3794323 =	31 (0.650)					coding (200/1191 nt)	PP_3355	beta‑ketothiolase
*	?	NC_002947	= 3838318	39 (0.770)	3 (0.060)	3/252	NT	7.3%	coding (1913/2673 nt)	PP_3388	hypothetical protein
	?	NC_002947	= 3838342	NA (NA)					coding (1937/2673 nt)	PP_3388	hypothetical protein
*	?	NC_002947	3846358 =	43 (0.850)	3 (0.060)	3/246	NT	6.3%	coding (339/966 nt)	PP_3395	LysR family transcriptional regulator
	?	NC_002947	3846424 =	48 (1.000)					coding (273/966 nt)	PP_3395	LysR family transcriptional regulator
*	?	NC_002947	3849459 =	51 (1.010)	3 (0.060)	3/250	NT	6.2%	coding (1224/2268 nt)	PP_3397	hypothetical protein
	?	NC_002947	3849493 =	42 (0.860)					coding (1258/2268 nt)	PP_3397	hypothetical protein
*	?	NC_002947	3859566 =	44 (0.870)	5 (0.110)	5/242	NT	10.6%	coding (400/753 nt)	cobM	precorrin‑4 C(11)‑methyltransferase
	?	NC_002947	3859608 =	43 (0.910)					coding (442/753 nt)	cobM	precorrin‑4 C(11)‑methyltransferase
*	?	NC_002947	3885659 =	53 (1.050)	3 (0.060)	3/250	NT	6.1%	coding (1544/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
	?	NC_002947	3885699 =	41 (0.840)					coding (1584/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
*	?	NC_002947	3893029 =	54 (1.070)	3 (0.060)	3/244	NT	5.6%	coding (393/888 nt)	rarD	chloramphenicol‑sensitive protein
	?	NC_002947	3893061 =	50 (1.050)					coding (425/888 nt)	rarD	chloramphenicol‑sensitive protein
*	?	NC_002947	= 3913538	44 (0.870)	5 (0.110)	5/242	NT	10.7%	coding (541/1302 nt)	PP_3453	sensor protein RstB
	?	NC_002947	= 3913558	42 (0.890)					coding (521/1302 nt)	PP_3453	sensor protein RstB
*	?	NC_002947	= 3926238	39 (0.770)	3 (0.060)	3/240	NT	7.9%	coding (253/1629 nt)	peaA	quinohemoprotein amine dehydrogenase subunit alpha
	?	NC_002947	= 3926260	34 (0.730)					coding (231/1629 nt)	peaA	quinohemoprotein amine dehydrogenase subunit alpha
*	?	NC_002947	= 3955280	54 (1.070)	4 (0.080)	4/248	NT	7.5%	coding (5105/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	= 3955300	47 (0.970)					coding (5085/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
*	?	NC_002947	4000753 =	50 (0.990)	4 (0.080)	4/242	NT	8.1%	coding (435/1365 nt)	dmoA‑II	dimethyl‑sulfide monooxygenase
	?	NC_002947	4000806 =	44 (0.930)					coding (488/1365 nt)	dmoA‑II	dimethyl‑sulfide monooxygenase
*	?	NC_002947	= 4000760	47 (0.930)	3 (0.060)	3/242	NT	6.4%	coding (442/1365 nt)	dmoA‑II	dimethyl‑sulfide monooxygenase
	?	NC_002947	= 4000797	44 (0.930)					coding (479/1365 nt)	dmoA‑II	dimethyl‑sulfide monooxygenase
*	?	NC_002947	4024969 =	64 (1.270)	4 (0.080)	4/242	NT	7.1%	coding (730/1194 nt)	emrA	multidrug transporter membrane fusion protein
	?	NC_002947	4025047 =	45 (0.950)					coding (652/1194 nt)	emrA	multidrug transporter membrane fusion protein
*	?	NC_002947	4034415 =	48 (0.950)	3 (0.060)	3/246	NT	6.7%	coding (289/1320 nt)	PP_3556	membrane protein
	?	NC_002947	4034456 =	38 (0.790)					coding (248/1320 nt)	PP_3556	membrane protein
*	?	NC_002947	= 4035542	46 (0.910)	5 (0.110)	5/242	NT	9.9%	coding (593/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 4035554	48 (1.020)					coding (605/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 4037143	51 (1.010)	3 (0.070)	3/234	NT	5.7%	intergenic (+49/‑46)	PP_3557/PP_3558	methyl‑accepting chemotaxis transducer/amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 4037174	53 (1.160)					intergenic (+80/‑15)	PP_3557/PP_3558	methyl‑accepting chemotaxis transducer/amino acid ABC transporter substrate‑binding protein
*	?	NC_002947	4057672 =	56 (1.110)	3 (0.060)	3/240	NT	5.8%	intergenic (‑11/+57)	PP_3575/PP_3576	ferric siderophore receptor/transmembrane sensor
	?	NC_002947	4057724 =	46 (0.980)					intergenic (‑63/+5)	PP_3575/PP_3576	ferric siderophore receptor/transmembrane sensor
*	?	NC_002947	4073100 =	53 (1.050)	4 (0.080)	4/244	NT	7.1%	coding (363/1308 nt)	mdtA	multidrug transporter membrane fusion protein
	?	NC_002947	4073133 =	55 (1.150)					coding (330/1308 nt)	mdtA	multidrug transporter membrane fusion protein
*	?	NC_002947	4074049 =	NA (NA)	14 (0.280)	12/252	NT	24.2%	intergenic (‑587/+37)	mdtA/PP_3586	multidrug transporter membrane fusion protein/transposase
	?	NC_002947	4957564 =	45 (0.890)					intergenic (‑47/+116)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein
*	?	NC_002947	= 4075742	NA (NA)	13 (0.270)	9/244	NT	24.2%	intergenic (‑328/+113)	PP_3586/tpx	transposase/2‑Cys peroxiredoxin
	?	NC_002947	= 4957566	43 (0.850)					intergenic (‑49/+114)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein
*	?	NC_002947	4086293 =	64 (1.270)	3 (0.060)	3/244	NT	5.3%	coding (992/1245 nt)	amaD	D‑lysine oxidase
	?	NC_002947	4086405 =	46 (0.970)					coding (1104/1245 nt)	amaD	D‑lysine oxidase
*	?	NC_002947	= 4093994	54 (1.070)	3 (0.060)	3/242	NT	5.5%	coding (991/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase
	?	NC_002947	= 4094016	53 (1.120)					coding (1013/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase
*	?	NC_002947	4110015 =	31 (0.620)	3 (0.060)	3/242	NT	9.2%	coding (1837/2991 nt)	PP_3616	membrane protein
	?	NC_002947	4110075 =	30 (0.640)					coding (1897/2991 nt)	PP_3616	membrane protein
*	?	NC_002947	= 4121685	38 (0.750)	6 (0.120)	6/248	NT	14.5%	coding (102/789 nt)	PP_3624	hypothetical protein
	?	NC_002947	= 4121700	34 (0.700)					coding (87/789 nt)	PP_3624	hypothetical protein
*	?	NC_002947	4132905 =	57 (1.130)	4 (0.080)	4/246	NT	6.9%	coding (256/1206 nt)	PP_3636	sulfonate ABC transporter substrate‑binding protein
	?	NC_002947	4132934 =	54 (1.120)					coding (227/1206 nt)	PP_3636	sulfonate ABC transporter substrate‑binding protein
*	?	NC_002947	4135844 =	46 (0.910)	4 (0.090)	4/240	NT	9.1%	coding (53/921 nt)	PP_3640	AraC family transcriptional regulator
	?	NC_002947	4135888 =	37 (0.790)					coding (97/921 nt)	PP_3640	AraC family transcriptional regulator
*	?	NC_002947	4139337 =	45 (0.890)	5 (0.100)	4/248	NT	11.1%	coding (270/1041 nt)	PP_3644	monooxygenase subunit
	?	NC_002947	4139373 =	37 (0.760)					coding (306/1041 nt)	PP_3644	monooxygenase subunit
*	?	NC_002947	4184325 =	55 (1.090)	3 (0.060)	3/244	NT	5.2%	coding (103/1659 nt)	PP_3681	putative Helicase
	?	NC_002947	4184359 =	57 (1.200)					coding (137/1659 nt)	PP_3681	putative Helicase
*	?	NC_002947	4184845 =	55 (1.090)	3 (0.060)	3/242	NT	6.3%	coding (623/1659 nt)	PP_3681	putative Helicase
	?	NC_002947	4184885 =	38 (0.800)					coding (663/1659 nt)	PP_3681	putative Helicase
*	?	NC_002947	= 4247363	43 (0.850)	3 (0.060)	3/244	NT	6.9%	coding (554/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	= 4247385	40 (0.840)					coding (532/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
*	?	NC_002947	= 4249166	53 (1.050)	4 (0.080)	4/246	NT	7.6%	coding (861/2118 nt)	PP_3724	acyl‑CoA synthetase
	?	NC_002947	= 4249191	47 (0.980)					coding (836/2118 nt)	PP_3724	acyl‑CoA synthetase
*	?	NC_002947	= 4249328	43 (0.850)	3 (0.060)	3/246	NT	6.3%	coding (699/2118 nt)	PP_3724	acyl‑CoA synthetase
	?	NC_002947	= 4249399	48 (1.000)					coding (628/2118 nt)	PP_3724	acyl‑CoA synthetase
*	?	NC_002947	4255645 =	49 (0.970)	4 (0.080)	4/242	NT	7.9%	coding (483/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4255688 =	47 (0.990)					coding (440/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 4352363	38 (0.750)	3 (0.060)	3/246	NT	7.0%	coding (21/303 nt)	PP_3825	hypothetical protein
	?	NC_002947	= 4352407	44 (0.920)					coding (65/303 nt)	PP_3825	hypothetical protein
*	?	NC_002947	4360251 =	58 (1.150)	4 (0.080)	4/244	NT	7.0%	coding (871/1161 nt)	PP_3835	two‑component system sensor histidine kinase
	?	NC_002947	4360289 =	51 (1.070)					coding (833/1161 nt)	PP_3835	two‑component system sensor histidine kinase
*	?	NC_002947	= 4388379	51 (1.010)	3 (0.060)	3/244	NT	6.4%	coding (414/1263 nt)	PP_3864	FluMu DNA circulation protein
	?	NC_002947	= 4388429	40 (0.840)					coding (364/1263 nt)	PP_3864	FluMu DNA circulation protein
*	?	NC_002947	= 4407748	40 (0.790)	4 (0.080)	4/246	NT	8.2%	coding (96/1299 nt)	PP_3889	putative Phage integrase
	?	NC_002947	= 4407806	52 (1.080)					coding (38/1299 nt)	PP_3889	putative Phage integrase
*	?	NC_002947	4408665 =	69 (1.370)	4 (0.080)	4/254	NT	5.8%	coding (64/297 nt)	ybcO	hypothetical protein
	?	NC_002947	4408697 =	61 (1.230)					coding (32/297 nt)	ybcO	hypothetical protein
*	?	NC_002947	4453208 =	72 (1.430)	3 (0.060)	3/238	NT	5.4%	coding (2812/3564 nt)	nicB	nicotinate dehydrogenase subunit B
	?	NC_002947	4453309 =	38 (0.820)					coding (2913/3564 nt)	nicB	nicotinate dehydrogenase subunit B
*	?	NC_002947	4464513 =	62 (1.230)	4 (0.090)	4/240	NT	6.5%	coding (1442/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC
	?	NC_002947	4464569 =	58 (1.240)					coding (1386/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC
*	?	NC_002947	= 4485477	30 (0.600)	5 (0.100)	5/246	NT	13.8%	coding (653/1302 nt)	PP_3977	hypothetical protein
	?	NC_002947	= 4485516	34 (0.710)					coding (692/1302 nt)	PP_3977	hypothetical protein
*	?	NC_002947	= 4525157	45 (0.890)	5 (0.110)	4/240	NT	10.4%	coding (88/1125 nt)	mnmA	tRNA 2‑thiouridine(34) synthase MnmA
	?	NC_002947	= 4525183	44 (0.940)					coding (114/1125 nt)	mnmA	tRNA 2‑thiouridine(34) synthase MnmA
*	?	NC_002947	= 4539807	55 (1.090)	3 (0.060)	3/242	NT	5.6%	coding (478/831 nt)	nudC	NADH pyrophosphatase
	?	NC_002947	= 4539826	50 (1.060)					coding (459/831 nt)	nudC	NADH pyrophosphatase
*	?	NC_002947	= 4561311	58 (1.150)	4 (0.080)	4/242	NT	7.7%	coding (238/1404 nt)	PP_4048	hypothetical protein
	?	NC_002947	= 4561361	42 (0.890)					coding (188/1404 nt)	PP_4048	hypothetical protein
*	?	NC_002947	4578324 =	47 (0.930)	4 (0.080)	4/242	NT	10.1%	coding (1787/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme
	?	NC_002947	4578364 =	27 (0.570)					coding (1747/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme
*	?	NC_002947	= 4586029	19 (0.380)	17 (0.370)	10/236	NT	50.5%	intergenic (+112/+103)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586109	16 (0.350)					intergenic (+192/+23)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4587977 =	54 (1.070)	5 (0.100)	5/246	NT	8.7%	intergenic (‑163/‑159)	PP_4063/ivd	long‑chain fatty acid‑‑CoA ligase/isovaleryl‑CoA dehydrogenase
	?	NC_002947	4588080 =	53 (1.100)					intergenic (‑266/‑56)	PP_4063/ivd	long‑chain fatty acid‑‑CoA ligase/isovaleryl‑CoA dehydrogenase
*	?	NC_002947	= 4625506	43 (0.850)	3 (0.060)	3/242	NT	6.6%	intergenic (+4099/+465)	PP_5654/PP_4091	phosphotriesterase/transposase
	?	NC_002947	= 4625534	45 (0.950)					intergenic (+4127/+437)	PP_5654/PP_4091	phosphotriesterase/transposase
*	?	NC_002947	= 4647595	17 (0.340)	4 (0.110)	4/180	NT	22.3%	intergenic (+48/+83)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	= 4647625	16 (0.460)					intergenic (+78/+53)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	4662711 =	52 (1.030)	3 (0.060)	3/250	NT	5.7%	coding (1575/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G
	?	NC_002947	4662757 =	48 (0.980)					coding (1621/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G
*	?	NC_002947	4701232 =	51 (1.010)	3 (0.060)	3/244	NT	7.0%	coding (163/558 nt)	kdpC	potassium‑transporting ATPase subunit C
	?	NC_002947	4701290 =	32 (0.670)					coding (105/558 nt)	kdpC	potassium‑transporting ATPase subunit C
*	?	NC_002947	= 4702830	34 (0.680)	4 (0.080)	4/252	NT	10.5%	coding (630/2055 nt)	kdpB	K+ transporting ATPase subunit KdpB
	?	NC_002947	= 4702864	35 (0.710)					coding (596/2055 nt)	kdpB	K+ transporting ATPase subunit KdpB
*	?	NC_002947	= 4768559	40 (0.790)	5 (0.100)	5/246	NT	11.3%	coding (253/957 nt)	PP_4218	lipase/esterase family protein
	?	NC_002947	= 4768582	40 (0.830)					coding (230/957 nt)	PP_4218	lipase/esterase family protein
*	?	NC_002947	4786030 =	46 (0.910)	4 (0.080)	3/242	NT	9.4%	coding (1284/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4786078 =	34 (0.720)					coding (1236/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4788341	63 (1.250)	4 (0.090)	3/240	NT	5.9%	coding (5499/6525 nt)	pvdI	non‑ribosomal peptide synthetase
	?	NC_002947	= 4788393	68 (1.450)					coding (5447/6525 nt)	pvdI	non‑ribosomal peptide synthetase
*	?	NC_002947	4792934 =	44 (0.870)	5 (0.100)	5/246	NT	9.6%	coding (906/6525 nt)	pvdI	non‑ribosomal peptide synthetase
	?	NC_002947	4792977 =	52 (1.080)					coding (863/6525 nt)	pvdI	non‑ribosomal peptide synthetase
*	?	NC_002947	4808174 =	0 (0.000)	19 (0.520)	17/188	NT	63.3%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	22 (0.600)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4808179	0 (0.000)	19 (0.420)	17/234	NT	44.2%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	48 (1.050)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4810308 =	62 (1.230)	3 (0.060)	3/244	NT	5.3%	coding (148/837 nt)	PP_4236	thiol:disulfide interchange protein DsbE
	?	NC_002947	4810358 =	49 (1.030)					coding (198/837 nt)	PP_4236	thiol:disulfide interchange protein DsbE
*	?	NC_002947	4851017 =	45 (0.890)	5 (0.110)	5/242	NT	9.7%	intergenic (+13/‑43)	fnrA/apt	DNA‑binding transcriptional dual regulator/adenine phosphoribosyltransferase
	?	NC_002947	4851056 =	51 (1.080)					intergenic (+52/‑4)	fnrA/apt	DNA‑binding transcriptional dual regulator/adenine phosphoribosyltransferase
*	?	NC_002947	4853842 =	50 (0.990)	3 (0.060)	3/244	NT	5.4%	coding (1259/2076 nt)	dnaX	DNA polymerase III subunit gamma
	?	NC_002947	4853907 =	57 (1.200)					coding (1194/2076 nt)	dnaX	DNA polymerase III subunit gamma
*	?	NC_002947	4880260 =	47 (0.930)	4 (0.080)	4/242	NT	9.5%	coding (870/1341 nt)	PP_4289	membrane protein
	?	NC_002947	4880298 =	32 (0.680)					coding (908/1341 nt)	PP_4289	membrane protein
*	?	NC_002947	= 4884373	38 (0.750)	4 (0.090)	4/240	NT	8.9%	intergenic (+39/+90)	PP_4293/yedI	hypothetical protein/inner membrane protein
	?	NC_002947	= 4884438	47 (1.000)					intergenic (+104/+25)	PP_4293/yedI	hypothetical protein/inner membrane protein
*	?	NC_002947	= 4893579	22 (0.440)	4 (0.100)	4/204	NT	18.0%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4893604	19 (0.480)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	4896378 =	20 (0.400)	9 (0.210)	9/216	NT	36.9%	intergenic (+11/‑197)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	4896467 =	14 (0.330)					intergenic (+100/‑108)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4896398	20 (0.400)	7 (0.170)	9/216	NT	31.3%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4896445	14 (0.330)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	4899656 =	52 (1.030)	4 (0.080)	3/242	NT	7.4%	coding (55/438 nt)	PP_4308	AsnC family transcriptional regulator
	?	NC_002947	4899715 =	52 (1.100)					coding (114/438 nt)	PP_4308	AsnC family transcriptional regulator
*	?	NC_002947	4902831 =	32 (0.640)	4 (0.090)	4/224	NT	11.0%	intergenic (+17/+102)	PP_4310/PP_4311	hydantoin racemase/D‑amino acid dehydrogenase small subunit
	?	NC_002947	4902928 =	37 (0.850)					intergenic (+114/+5)	PP_4310/PP_4311	hydantoin racemase/D‑amino acid dehydrogenase small subunit
*	?	NC_002947	4904206 =	55 (1.090)	3 (0.060)	3/242	NT	5.8%	coding (628/663 nt)	PP_4312	hypothetical protein
	?	NC_002947	4904254 =	46 (0.970)					coding (580/663 nt)	PP_4312	hypothetical protein
*	?	NC_002947	= 4904612	53 (1.050)	3 (0.070)	3/236	NT	5.7%	coding (222/663 nt)	PP_4312	hypothetical protein
	?	NC_002947	= 4904655	51 (1.110)					coding (179/663 nt)	PP_4312	hypothetical protein
*	?	NC_002947	4918927 =	51 (1.010)	4 (0.080)	4/244	NT	7.1%	coding (1326/1557 nt)	PP_4328	hypothetical protein
	?	NC_002947	4918982 =	57 (1.200)					coding (1381/1557 nt)	PP_4328	hypothetical protein
*	?	NC_002947	4952488 =	64 (1.270)	4 (0.080)	4/248	NT	6.3%	coding (195/339 nt)	PP_4362	hypothetical protein
	?	NC_002947	4952525 =	58 (1.200)					coding (158/339 nt)	PP_4362	hypothetical protein
*	?	NC_002947	5027544 =	53 (1.050)	6 (0.130)	3/242	NT	11.1%	coding (854/993 nt)	ocd	ornithine cyclodeaminase
	?	NC_002947	5027594 =	46 (0.970)					coding (904/993 nt)	ocd	ornithine cyclodeaminase
*	?	NC_002947	5052821 =	56 (1.110)	6 (0.120)	5/246	NT	10.3%	coding (1630/1833 nt)	gsiA	glutathione ABC transporter ATP‑binding protein
	?	NC_002947	5052845 =	51 (1.060)					coding (1606/1833 nt)	gsiA	glutathione ABC transporter ATP‑binding protein
*	?	NC_002947	5064017 =	57 (1.130)	4 (0.080)	4/242	NT	7.1%	coding (980/1293 nt)	PP_4461	MFS transporter
	?	NC_002947	5064051 =	51 (1.080)					coding (946/1293 nt)	PP_4461	MFS transporter
*	?	NC_002947	= 5070409	47 (0.930)	3 (0.060)	3/246	NT	6.3%	coding (478/873 nt)	PP_4466	TauD/TfdA family dioxygenase
	?	NC_002947	= 5070436	44 (0.920)					coding (451/873 nt)	PP_4466	TauD/TfdA family dioxygenase
*	?	NC_002947	5080220 =	54 (1.070)	3 (0.060)	3/242	NT	6.2%	intergenic (‑85/+83)	csrA/lysC	carbon storage regulator/aspartokinase
	?	NC_002947	5080257 =	40 (0.850)					intergenic (‑122/+46)	csrA/lysC	carbon storage regulator/aspartokinase
*	?	NC_002947	= 5094818	61 (1.210)	3 (0.060)	3/246	NT	5.1%	coding (388/699 nt)	hisM	histidine/lysine/arginine/ornithine ABC transporter permease
	?	NC_002947	= 5094848	54 (1.120)					coding (358/699 nt)	hisM	histidine/lysine/arginine/ornithine ABC transporter permease
*	?	NC_002947	= 5101273	49 (0.970)	3 (0.060)	3/248	NT	6.1%	coding (354/1560 nt)	phhR	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 5101301	45 (0.930)					coding (326/1560 nt)	phhR	sigma‑54 dependent transcriptional regulator
*	?	NC_002947	= 5125870	57 (1.130)	3 (0.060)	3/248	NT	5.1%	coding (663/891 nt)	PP_4512	DMT superfamily permease
	?	NC_002947	= 5125884	58 (1.200)					coding (677/891 nt)	PP_4512	DMT superfamily permease
*	?	NC_002947	5147701 =	NA (NA)	3 (0.060)	3/244	NT	15.0%	coding (806/1302 nt)	mscMB	miniconductance mechanosensitive channel protein
	?	NC_002947	5147725 =	18 (0.360)					coding (830/1302 nt)	mscMB	miniconductance mechanosensitive channel protein
*	?	NC_002947	5175476 =	58 (1.150)	4 (0.080)	4/244	NT	7.9%	coding (279/945 nt)	PP_4551	alpha/beta family hydrolase
	?	NC_002947	5175535 =	39 (0.820)					coding (338/945 nt)	PP_4551	alpha/beta family hydrolase
*	?	NC_002947	5180685 =	72 (1.430)	4 (0.080)	4/246	NT	5.7%	coding (302/537 nt)	def‑II	peptide deformylase
	?	NC_002947	5180727 =	64 (1.330)					coding (260/537 nt)	def‑II	peptide deformylase
*	?	NC_002947	= 5255585	51 (1.010)	3 (0.060)	3/244	NT	5.7%	coding (115/738 nt)	folM	bifunctional dihydrofolate reductase/dihydromonapterin reductase
	?	NC_002947	= 5255606	51 (1.070)					coding (136/738 nt)	folM	bifunctional dihydrofolate reductase/dihydromonapterin reductase
*	?	NC_002947	5255902 =	51 (1.010)	4 (0.080)	4/244	NT	8.2%	coding (432/738 nt)	folM	bifunctional dihydrofolate reductase/dihydromonapterin reductase
	?	NC_002947	5255949 =	41 (0.860)					coding (479/738 nt)	folM	bifunctional dihydrofolate reductase/dihydromonapterin reductase
*	?	NC_002947	5263136 =	50 (0.990)	5 (0.100)	4/244	NT	9.8%	coding (1309/1488 nt)	PP_4638	methylenetetrahydrofolate reductase
	?	NC_002947	5263184 =	45 (0.940)					coding (1357/1488 nt)	PP_4638	methylenetetrahydrofolate reductase
*	?	NC_002947	5288394 =	20 (0.400)	5 (0.130)	4/198	NT	22.5%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5288488 =	19 (0.490)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	= 5288423	20 (0.400)	4 (0.100)	3/198	NT	18.9%	intergenic (‑104/+80)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	= 5288457	19 (0.490)					intergenic (‑138/+46)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	= 5290471	52 (1.030)	3 (0.060)	3/248	NT	5.3%	coding (69/882 nt)	PP_4664	LysR family transcriptional regulator
	?	NC_002947	= 5290501	57 (1.180)					coding (99/882 nt)	PP_4664	LysR family transcriptional regulator
*	?	NC_002947	= 5292588	52 (1.030)	4 (0.080)	4/246	NT	7.2%	coding (262/888 nt)	mmsB	3‑hydroxyisobutyrate dehydrogenase
	?	NC_002947	= 5292610	54 (1.120)					coding (240/888 nt)	mmsB	3‑hydroxyisobutyrate dehydrogenase
*	?	NC_002947	= 5334452	49 (0.970)	3 (0.060)	3/242	NT	6.1%	coding (882/2976 nt)	PP_4695	two‑component system sensor histidine kinase
	?	NC_002947	= 5334475	47 (0.990)					coding (905/2976 nt)	PP_4695	two‑component system sensor histidine kinase
*	?	NC_002947	5334516 =	52 (1.030)	4 (0.080)	4/242	NT	7.2%	coding (946/2976 nt)	PP_4695	two‑component system sensor histidine kinase
	?	NC_002947	5334561 =	54 (1.140)					coding (991/2976 nt)	PP_4695	two‑component system sensor histidine kinase
*	?	NC_002947	5345057 =	48 (0.950)	4 (0.080)	4/244	NT	8.1%	coding (455/1935 nt)	acsA‑II	acetyl‑CoA synthetase
	?	NC_002947	5345106 =	45 (0.940)					coding (504/1935 nt)	acsA‑II	acetyl‑CoA synthetase
*	?	NC_002947	5388632 =	56 (1.110)	3 (0.060)	3/250	NT	5.8%	coding (2142/2811 nt)	dld2	D‑lactate dehydrogenase
	?	NC_002947	5388688 =	44 (0.900)					coding (2198/2811 nt)	dld2	D‑lactate dehydrogenase
*	?	NC_002947	= 5426144	47 (0.930)	3 (0.060)	3/244	NT	5.7%	coding (680/1239 nt)	PP_4765	hypothetical protein
	?	NC_002947	= 5426170	55 (1.150)					coding (706/1239 nt)	PP_4765	hypothetical protein
*	?	NC_002947	= 5439266	53 (1.050)	3 (0.060)	3/238	NT	6.3%	coding (90/633 nt)	rluE	23S rRNA pseudouridine(2457) synthase
	?	NC_002947	= 5439309	41 (0.880)					coding (47/633 nt)	rluE	23S rRNA pseudouridine(2457) synthase
*	?	NC_002947	5480390 =	46 (0.910)	4 (0.080)	3/244	NT	8.1%	coding (914/993 nt)	prmA	ribosomal protein L11 methyltransferase
	?	NC_002947	5480474 =	47 (0.990)					intergenic (+5/‑38)	prmA/PP_4819	ribosomal protein L11 methyltransferase/hypothetical protein
*	?	NC_002947	5490519 =	58 (1.150)	5 (0.100)	4/246	NT	8.5%	coding (264/657 nt)	PP_5714	hypothetical protein
	?	NC_002947	5490573 =	52 (1.080)					coding (210/657 nt)	PP_5714	hypothetical protein
*	?	NC_002947	= 5518311	66 (1.310)	4 (0.080)	4/242	NT	6.6%	coding (270/1068 nt)	PP_4850	membrane protein
	?	NC_002947	= 5518382	51 (1.080)					coding (199/1068 nt)	PP_4850	membrane protein
*	?	NC_002947	5521684 =	52 (1.030)	3 (0.060)	3/248	NT	6.1%	coding (102/948 nt)	lip	lipase
	?	NC_002947	5521716 =	43 (0.890)					coding (70/948 nt)	lip	lipase
*	?	NC_002947	5546283 =	64 (1.270)	5 (0.100)	3/244	NT	8.4%	coding (201/747 nt)	rlmB	23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	5546378 =	49 (1.030)					coding (106/747 nt)	rlmB	23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 5580197	47 (0.930)	5 (0.110)	3/240	NT	9.4%	coding (668/1248 nt)	serB	phosphoserine phosphatase
	?	NC_002947	= 5580256	53 (1.130)					coding (609/1248 nt)	serB	phosphoserine phosphatase
*	?	NC_002947	5629790 =	45 (0.890)	5 (0.100)	3/246	NT	10.6%	coding (476/1629 nt)	putP	sodium/L‑proline transporter
	?	NC_002947	5629844 =	41 (0.850)					coding (422/1629 nt)	putP	sodium/L‑proline transporter
*	?	NC_002947	5637710 =	56 (1.110)	3 (0.060)	3/250	NT	5.5%	coding (244/1443 nt)	PP_4949	TldD/PmbA family peptidase
	?	NC_002947	5637786 =	49 (1.000)					coding (320/1443 nt)	PP_4949	TldD/PmbA family peptidase
*	?	NC_002947	5638366 =	50 (0.990)	3 (0.060)	3/244	NT	6.2%	coding (900/1443 nt)	PP_4949	TldD/PmbA family peptidase
	?	NC_002947	5638409 =	44 (0.920)					coding (943/1443 nt)	PP_4949	TldD/PmbA family peptidase
*	?	NC_002947	5654243 =	55 (1.090)	3 (0.060)	3/246	NT	5.9%	coding (232/1164 nt)	pgk	phosphoglycerate kinase
	?	NC_002947	5654288 =	43 (0.900)					coding (187/1164 nt)	pgk	phosphoglycerate kinase
*	?	NC_002947	= 5671638	34 (0.680)	4 (0.100)	4/210	NT	9.9%	intergenic (+57/‑113)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	= 5671675	45 (1.100)					intergenic (+94/‑76)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
*	?	NC_002947	= 5673501	54 (1.070)	3 (0.060)	3/246	NT	5.0%	coding (744/1881 nt)	rhlE‑II	ATP‑dependent RNA helicase
	?	NC_002947	= 5673537	62 (1.290)					coding (780/1881 nt)	rhlE‑II	ATP‑dependent RNA helicase
*	?	NC_002947	5731590 =	59 (1.170)	4 (0.080)	4/244	NT	6.5%	coding (966/1206 nt)	hutI	imidazolonepropionase
	?	NC_002947	5731630 =	60 (1.260)					coding (926/1206 nt)	hutI	imidazolonepropionase
*	?	NC_002947	= 5745143	52 (1.030)	4 (0.080)	3/244	NT	8.1%	coding (722/2451 nt)	glgP	glycogen phosphorylase
	?	NC_002947	= 5745173	41 (0.860)					coding (692/2451 nt)	glgP	glycogen phosphorylase
*	?	NC_002947	= 5772407	68 (1.350)	4 (0.080)	4/250	NT	6.1%	coding (556/2004 nt)	betT‑I	choline transporter
	?	NC_002947	= 5772451	58 (1.190)					coding (512/2004 nt)	betT‑I	choline transporter
*	?	NC_002947	5777084 =	59 (1.170)	3 (0.060)	3/246	NT	5.2%	coding (1401/1698 nt)	betA‑II	choline dehydrogenase
	?	NC_002947	5777121 =	54 (1.120)					coding (1438/1698 nt)	betA‑II	choline dehydrogenase
*	?	NC_002947	5786472 =	47 (0.930)	4 (0.100)	4/210	NT	11.1%	intergenic (+15/‑116)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	5786557 =	26 (0.630)					intergenic (+100/‑31)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	5807429 =	43 (0.850)	3 (0.060)	3/248	NT	6.6%	coding (2018/2454 nt)	mrcA	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase
	?	NC_002947	5807464 =	43 (0.890)					coding (2053/2454 nt)	mrcA	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase
*	?	NC_002947	5825499 =	48 (0.950)	4 (0.080)	4/246	NT	8.1%	coding (796/813 nt)	thiG	thiazole synthase
	?	NC_002947	5825520 =	45 (0.940)					coding (775/813 nt)	thiG	thiazole synthase
*	?	NC_002947	= 5846365	48 (0.950)	3 (0.060)	3/240	NT	6.4%	coding (467/813 nt)	mutM	formamidopyrimidine‑DNA glycosylase
	?	NC_002947	= 5846400	43 (0.920)					coding (432/813 nt)	mutM	formamidopyrimidine‑DNA glycosylase
*	?	NC_002947	= 5864753	65 (1.290)	4 (0.080)	4/250	NT	6.2%	coding (1398/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
	?	NC_002947	= 5864800	59 (1.210)					coding (1351/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
*	?	NC_002947	5876984 =	29 (0.580)	5 (0.120)	5/210	NT	18.3%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877066 =	21 (0.510)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	= 5877007	26 (0.520)	5 (0.120)	5/210	NT	19.2%	intergenic (+29/+76)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	= 5877041	21 (0.510)					intergenic (+63/+42)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	= 5896619	33 (0.660)	3 (0.060)	3/246	NT	8.2%	coding (770/1029 nt)	sbp‑II	sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 5896646	36 (0.750)					coding (743/1029 nt)	sbp‑II	sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	5903760 =	58 (1.150)	6 (0.130)	6/238	NT	10.7%	intergenic (+16/+91)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	5903842 =	47 (1.010)					intergenic (+98/+9)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	5914157 =	33 (0.660)	7 (0.180)	7/202	NT	25.5%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5914253 =	15 (0.380)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5914184	32 (0.640)	8 (0.200)	8/202	NT	28.5%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5914224	15 (0.380)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5924012	55 (1.090)	3 (0.060)	3/244	NT	5.0%	coding (419/2874 nt)	gcvP‑II	glycine dehydrogenase
	?	NC_002947	= 5924055	61 (1.280)					coding (376/2874 nt)	gcvP‑II	glycine dehydrogenase
*	?	NC_002947	5933742 =	32 (0.640)	3 (0.060)	3/248	NT	8.9%	coding (235/555 nt)	PP_5201	hypothetical protein
	?	NC_002947	5933781 =	31 (0.640)					coding (196/555 nt)	PP_5201	hypothetical protein
*	?	NC_002947	= 5942349	64 (1.270)	5 (0.100)	5/246	NT	8.1%	coding (166/462 nt)	PP_5209	hypothetical protein
	?	NC_002947	= 5942382	53 (1.100)					coding (133/462 nt)	PP_5209	hypothetical protein
*	?	NC_002947	5978800 =	67 (1.330)	3 (0.060)	3/250	NT	5.4%	coding (317/993 nt)	PP_5241	LuxR family transcriptional regulator
	?	NC_002947	5978907 =	41 (0.840)					coding (210/993 nt)	PP_5241	LuxR family transcriptional regulator
*	?	NC_002947	5996712 =	52 (1.030)	4 (0.080)	4/252	NT	7.1%	coding (320/1983 nt)	PP_5252	hypothetical protein
	?	NC_002947	5996795 =	54 (1.100)					coding (237/1983 nt)	PP_5252	hypothetical protein
*	?	NC_002947	= 6003549	56 (1.110)	4 (0.080)	4/248	NT	6.7%	coding (388/1491 nt)	amaB	L‑piperidine‑6‑carboxylate dehydrogenase
	?	NC_002947	= 6003593	58 (1.200)					coding (344/1491 nt)	amaB	L‑piperidine‑6‑carboxylate dehydrogenase
*	?	NC_002947	6027893 =	47 (0.930)	3 (0.070)	3/216	NT	8.4%	intergenic (‑37/+74)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	6027950 =	26 (0.620)					intergenic (‑94/+17)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
*	?	NC_002947	6060446 =	66 (1.310)	3 (0.060)	3/238	NT	5.5%	intergenic (+82/+99)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6060503 =	43 (0.930)					intergenic (+139/+42)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	= 6062972	54 (1.070)	4 (0.080)	4/248	NT	7.2%	intergenic (‑85/‑140)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase
	?	NC_002947	= 6063004	51 (1.050)					intergenic (‑117/‑108)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase
*	?	NC_002947	= 6078328	51 (1.010)	3 (0.060)	3/246	NT	5.3%	coding (898/1290 nt)	PP_5330	MFS transporter
	?	NC_002947	= 6078351	59 (1.230)					coding (875/1290 nt)	PP_5330	MFS transporter
*	?	NC_002947	= 6079905	44 (0.870)	5 (0.100)	5/248	NT	10.6%	coding (319/399 nt)	PP_5331	acyl‑CoA thioesterase
	?	NC_002947	= 6079927	42 (0.870)					coding (341/399 nt)	PP_5331	acyl‑CoA thioesterase
*	?	NC_002947	6099117 =	34 (0.680)	3 (0.060)	3/244	NT	9.5%	intergenic (‑29/‑60)	PP_5350/zwf	RpiR family transcriptional regulator/glucose 6‑phosphate 1‑dehydrogenase
	?	NC_002947	6099162 =	25 (0.520)					intergenic (‑74/‑15)	PP_5350/zwf	RpiR family transcriptional regulator/glucose 6‑phosphate 1‑dehydrogenase