breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	1,699	G→T	6.5%	P41Q (CCG→CAG)	parA ←	chromosome partition protein
RA	1,706	G→C	7.9%	L39V (CTC→GTC)	parA ←	chromosome partition protein
RA	1,707	G→C	8.0%	D38E (GAC→GAG)	parA ←	chromosome partition protein
RA	6,332	C→A	5.1%	R17R (CGG→CGT)	trmE ←	GTPase
RA	6,339	T→A	6.6%	Q15L (CAG→CTG)	trmE ←	GTPase
RA	6,346	T→G	6.1%	T13P (ACG→CCG)	trmE ←	GTPase
RA	19,117	C→T	6.3%	A637V (GCA→GTA)	PP_0014 →	transposase
RA	23,510	C→T	6.4%	A112V (GCA→GTA)	PP_0018 →	hypothetical protein
RA	43,457	Δ1 bp	9.4%	intergenic (+23/+70)	PP_0040 → / ← cadA‑I	hypothetical protein/cadmium translocating P‑type ATPase
RA	43,461:1	+A	10.0%	intergenic (+27/+66)	PP_0040 → / ← cadA‑I	hypothetical protein/cadmium translocating P‑type ATPase
RA	45,680	C→G	9.8%	intergenic (‑156/+47)	cadA‑I ← / ← PP_0042	cadmium translocating P‑type ATPase/hypothetical protein
RA	48,872	T→G	8.4%	D168A (GAC→GCC) ‡	czcA‑I ←	cation efflux system protein
RA	48,873	C→A	8.1%	D168Y (GAC→TAC) ‡	czcA‑I ←	cation efflux system protein
RA	60,726	G→A	6.4%	intergenic (‑118/‑105)	PP_0051 ← / → PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein
RA	60,729	T→A	6.5%	intergenic (‑121/‑102)	PP_0051 ← / → PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein
RA	60,730	T→A	6.5%	intergenic (‑122/‑101)	PP_0051 ← / → PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein
RA	60,731	T→A	6.5%	intergenic (‑123/‑100)	PP_0051 ← / → PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein
RA	60,734	T→C	6.4%	intergenic (‑126/‑97)	PP_0051 ← / → PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein
RA	68,340	G→T	11.3%	intergenic (+28/+147)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,342	A→T	10.5%	intergenic (+30/+145)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,344	A→C	10.5%	intergenic (+32/+143)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,598	T→G	6.9%	P225P (CCA→CCC)	PP_0058 ←	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,603	C→A	7.4%	G224W (GGG→TGG)	PP_0058 ←	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	77,500	A→T	5.5%	L15H (CTC→CAC)	rsmB ←	ribosomal RNA small subunit methyltransferase B
RA	77,503	A→T	6.2%	V14E (GTG→GAG)	rsmB ←	ribosomal RNA small subunit methyltransferase B
RA	78,268	C→T	7.2%	D69N (GAT→AAT)	fmt ←	methionyl‑tRNA formyltransferase
RA	78,506	C→T	10.0%	intergenic (‑34/+27)	fmt ← / ← def‑I	methionyl‑tRNA formyltransferase/peptide deformylase
RA	78,507	G→C	10.0%	intergenic (‑35/+26)	fmt ← / ← def‑I	methionyl‑tRNA formyltransferase/peptide deformylase
RA	78,508	G→C	10.0%	intergenic (‑36/+25)	fmt ← / ← def‑I	methionyl‑tRNA formyltransferase/peptide deformylase
RA	78,509	A→G	10.0%	intergenic (‑37/+24)	fmt ← / ← def‑I	methionyl‑tRNA formyltransferase/peptide deformylase
RA	104,876	G→C	5.5%	P345P (CCG→CCC)	PP_0099 →	hypothetical protein
RA	117,274	G→A	8.2%	intergenic (+54/+40)	PP_0111 → / ← metQ	electron transport protein SCO1/SenC/methionine ABC transporter substrate‑binding protein
RA	122,222	A→C	6.4%	intergenic (+32/+29)	katE → / ← PP_0116	hydroperoxidase/putative lipoprotein
RA	125,468	C→A	6.6%	A96D (GCT→GAT)	PP_0120 →	zinc ABC transporter
RA	126,115	A→G	8.6%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	8.4%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	132,939	A→T	6.1%	Q121L (CAG→CTG)	dsbA →	thiol:disulfide interchange protein
RA	133,399	C→G	5.9%	H59Q (CAC→CAG)	PP_0128 →	hypothetical protein
RA	133,400	C→G	6.2%	L60V (CTG→GTG)	PP_0128 →	hypothetical protein
RA	150,828	A→C	5.1%	L41R (CTG→CGG) ‡	PP_0142 ←	ABC transporter permease
RA	150,829	G→T	5.9%	L41M (CTG→ATG) ‡	PP_0142 ←	ABC transporter permease
RA	155,543	G→T	10.0%	intergenic (‑248/+35)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	155,546	A→C	10.4%	intergenic (‑251/+32)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	162,281	A→T	9.1%	intergenic (‑315/+59)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,282	A→T	9.4%	intergenic (‑316/+58)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	170,838	G→T	13.8%	intergenic (+19/‑551)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,839	T→G	16.1%	intergenic (+20/‑550)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,840	C→A	13.1%	intergenic (+21/‑549)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,841	A→C	13.6%	intergenic (+22/‑548)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	185,364	Δ1 bp	6.2%	coding (249/957 nt)	PP_0161 ←	putative transmembrane sensor
RA	185,367	A→C	6.9%	R82R (CGT→CGG)	PP_0161 ←	putative transmembrane sensor
RA	185,372:1	+A	5.9%	coding (241/957 nt)	PP_0161 ←	putative transmembrane sensor
RA	191,125	C→T	100%	V83M (GTG→ATG)	PP_0166 ←	HlyD family secretion protein
RA	194,606	G→C	11.5%	E38Q (GAA→CAA) ‡	PP_0168 →	putative surface adhesion protein
RA	194,608	A→C	11.5%	E38D (GAA→GAC) ‡	PP_0168 →	putative surface adhesion protein
RA	194,609	G→T	11.5%	V39L (GTG→TTG) ‡	PP_0168 →	putative surface adhesion protein
RA	194,611	G→C	10.9%	V39V (GTG→GTC) ‡	PP_0168 →	putative surface adhesion protein
RA	195,559	C→A	32.4%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	9.1%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	9.2%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	40.3%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	16.9%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	21.3%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	27.3%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,372	A→G	6.3%	K626K (AAA→AAG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	30.1%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	7.2%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	13.8%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	9.1%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	12.5%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	22.0%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	25.6%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	10.0%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	15.3%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	225,366	C→T	7.9%	A99T (GCC→ACC)	PP_0173 ←	transcriptional factor‑like protein
RA	225,369	A→G	7.7%	S98P (TCG→CCG)	PP_0173 ←	transcriptional factor‑like protein
RA	227,872	G→A	6.6%	R233H (CGC→CAC)	PP_0176 →	putative efflux transporter
RA	227,875	A→C	6.8%	E234A (GAA→GCA)	PP_0176 →	putative efflux transporter
RA	227,877	T→A	7.9%	L235M (TTG→ATG) ‡	PP_0176 →	putative efflux transporter
RA	227,879	G→T	8.3%	L235F (TTG→TTT) ‡	PP_0176 →	putative efflux transporter
RA	239,163	Δ1 bp	5.8%	coding (244/768 nt)	hemD →	uroporphyrinogen‑III synthase
RA	239,167	A→T	5.7%	Q83L (CAG→CTG)	hemD →	uroporphyrinogen‑III synthase
RA	239,169:1	+G	5.6%	coding (250/768 nt)	hemD →	uroporphyrinogen‑III synthase
RA	239,631	G→A	8.3%	A238T (GCC→ACC) ‡	hemD →	uroporphyrinogen‑III synthase
RA	239,633	C→T	7.9%	A238A (GCC→GCT) ‡	hemD →	uroporphyrinogen‑III synthase
RA	239,634	A→G	8.1%	S239G (AGT→GGT) ‡	hemD →	uroporphyrinogen‑III synthase
RA	239,636	T→C	8.2%	S239S (AGT→AGC) ‡	hemD →	uroporphyrinogen‑III synthase
RA	250,911	G→C	6.4%	R98G (CGC→GGC)	nfeD ←	membrane bound peptidase NefD
RA	253,356	C→T	5.8%	intergenic (‑141/+30)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,358	A→T	5.8%	intergenic (‑143/+28)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,359	A→T	5.8%	intergenic (‑144/+27)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,361	A→G	5.8%	intergenic (‑146/+25)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	262,940	G→C	6.7%	intergenic (+175/‑310)	PP_0211 → / → gabD‑I	hypothetical protein/succinate‑semialdehyde dehydrogenase
RA	262,944	C→G	6.9%	intergenic (+179/‑306)	PP_0211 → / → gabD‑I	hypothetical protein/succinate‑semialdehyde dehydrogenase
RA	262,946	G→T	7.3%	intergenic (+181/‑304)	PP_0211 → / → gabD‑I	hypothetical protein/succinate‑semialdehyde dehydrogenase
RA	262,948	G→C	7.2%	intergenic (+183/‑302)	PP_0211 → / → gabD‑I	hypothetical protein/succinate‑semialdehyde dehydrogenase
RA	271,324	G→T	8.4%	A409S (GCG→TCG)	PP_0218 →	sensory box protein
RA	271,327	T→G	10.1%	S410A (TCA→GCA) ‡	PP_0218 →	sensory box protein
RA	271,329	A→C	8.6%	S410S (TCA→TCC) ‡	PP_0218 →	sensory box protein
RA	271,330	G→T	8.6%	G411C (GGC→TGC) ‡	PP_0218 →	sensory box protein
RA	271,332	C→A	8.3%	G411G (GGC→GGA) ‡	PP_0218 →	sensory box protein
RA	271,335	A→C	8.5%	R412R (CGA→CGC)	PP_0218 →	sensory box protein
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	284,586	T→A	15.0%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,587	T→A	13.3%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	285,051	G→C	6.8%	F133L (TTC→TTG)	atsK ←	alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	285,328	T→A	6.8%	Q41L (CAG→CTG)	atsK ←	alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	289,942	C→A	10.0%	intergenic (+26/‑140)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,944	G→C	8.6%	intergenic (+28/‑138)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,946	T→G	8.7%	intergenic (+30/‑136)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	308,213	G→A	6.0%	intergenic (+1228/‑641)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	317,711	C→G	8.2%	E74Q (GAA→CAA)	dctD‑I ←	C4‑dicarboxylate transport transcriptional regulator
RA	321,740	T→C	9.7%	intergenic (+27/+431)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	321,741	G→A	9.7%	intergenic (+28/+430)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,133	G→A	15.9%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	15.0%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	326,065	C→A	7.2%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	328,688	T→C	6.8%	I188V (ATC→GTC)	PP_0270 ←	sensor histidine kinase
RA	333,174	C→T	7.8%	H105Y (CAC→TAC)	PP_5435 →	hypothetical protein
RA	333,177	G→T	7.8%	A106S (GCC→TCC)	PP_5435 →	hypothetical protein
RA	333,184	A→G	7.4%	Y108C (TAC→TGC)	PP_5435 →	hypothetical protein
RA	334,603	A→T	9.2%	L28* (TTG→TAG) ‡	PP_0276 ←	Cro/CI family transcriptional regulator
RA	334,604	A→T	9.2%	L28M (TTG→ATG) ‡	PP_0276 ←	Cro/CI family transcriptional regulator
RA	334,944	T→G	5.8%	intergenic (‑259/+29)	PP_0276 ← / ← PP_t73	Cro/CI family transcriptional regulator/tRNA‑Thr
RA	334,945	T→A	5.8%	intergenic (‑260/+28)	PP_0276 ← / ← PP_t73	Cro/CI family transcriptional regulator/tRNA‑Thr
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	337,809	A→G	12.2%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,816:1	+A	12.5%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819	A→C	12.6%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	C→G	11.8%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	G→T	13.5%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,827	Δ1 bp	11.5%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,836	C→T	13.8%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	344,041	Δ1 bp	5.3%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	5.3%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	348,710	G→A	8.0%	P199P (CCG→CCA)	PP_0288 →	oxalate/formate antiporter
RA	351,749	C→T	7.0%	Q79* (CAG→TAG) ‡	hisA →	phosphoribosylformimino‑5‑aminoimidazole carboxamide ribonucleotide isomerase
RA	351,750	A→G	6.9%	Q79R (CAG→CGG) ‡	hisA →	phosphoribosylformimino‑5‑aminoimidazole carboxamide ribonucleotide isomerase
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	358,085	A→G	13.1%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,087	C→T	10.8%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	T→C	11.6%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,091	G→A	11.3%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	A→G	9.8%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,096	C→T	10.7%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	361,452	C→T	6.9%	T368M (ACG→ATG)	PP_0300 →	metallopeptidase
RA	367,367	T→G	8.7%	intergenic (‑53/+21)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	385,475	A→C	8.4%	intergenic (+15/+20)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	385,476	C→G	8.7%	intergenic (+16/+19)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	385,477	G→T	8.7%	intergenic (+17/+18)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	416,956	G→A	5.9%	P222P (CCG→CCA)	waaG →	lipopolysaccharide glucosyltransferase I
RA	427,752	A→C	10.2%	L16R (CTG→CGG) ‡	PP_0350 ←	ferrichrome‑iron receptor
RA	427,753	G→T	10.3%	L16M (CTG→ATG) ‡	PP_0350 ←	ferrichrome‑iron receptor
RA	428,854	Δ1 bp	7.0%	coding (153/957 nt)	PP_0351 ←	transmembrane sensor
RA	428,858:1	+C	7.1%	coding (149/957 nt)	PP_0351 ←	transmembrane sensor
RA	432,993	A→T	8.3%	intergenic (+18/+29)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,994	A→T	8.3%	intergenic (+19/+28)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,995	A→T	8.3%	intergenic (+20/+27)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	433,254	C→G	5.6%	G649A (GGC→GCC)	glcB ←	malate synthase G
RA	438,176	C→T	6.2%	A62T (GCC→ACC)	rdoA ←	serine/threonine protein kinase
RA	446,384	C→G	5.2%	A357G (GCC→GGC)	PP_0368 →	acyl‑CoA dehydrogenase
RA	448,547	A→T	6.0%	I376F (ATC→TTC)	PP_0369 →	diguanylate cyclase
RA	450,918	T→C	9.7%	noncoding (115/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,919	T→G	9.6%	noncoding (116/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,920	C→A	9.4%	noncoding (117/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,921	G→A	9.8%	noncoding (118/127 nt)	PP_mr05 →	RsmY ncRNA
RA	452,102	G→A	7.2%	R7H (CGC→CAC)	aruC →	acetylornithine aminotransferase
RA	459,899	C→T	7.4%	intergenic (‑45/+34)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	459,904	A→C	9.1%	intergenic (‑50/+29)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	459,905	G→T	6.8%	intergenic (‑51/+28)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	459,910	A→G	7.0%	intergenic (‑56/+23)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	462,592	A→T	8.3%	intergenic (‑128/+13)	pqqF ← / ← davA	coenzyme PQQ synthesis protein F/5‑aminopentanamidase
RA	462,593	T→A	8.5%	intergenic (‑129/+12)	pqqF ← / ← davA	coenzyme PQQ synthesis protein F/5‑aminopentanamidase
RA	462,594	A→T	8.1%	intergenic (‑130/+11)	pqqF ← / ← davA	coenzyme PQQ synthesis protein F/5‑aminopentanamidase
RA	464,320	G→C	10.0%	H259Q (CAC→CAG) ‡	davB ←	lysine 2‑monooxygenase
RA	464,321	T→A	10.1%	H259L (CAC→CTC) ‡	davB ←	lysine 2‑monooxygenase
RA	464,322	G→C	10.2%	H259D (CAC→GAC) ‡	davB ←	lysine 2‑monooxygenase
RA	476,697	A→C	11.0%	Q330P (CAG→CCG) ‡	tsaD →	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
RA	476,698	G→T	13.2%	Q330H (CAG→CAT) ‡	tsaD →	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
RA	479,486	T→C	6.0%	intergenic (‑18/+38)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,493	A→G	7.4%	intergenic (‑25/+31)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,496	A→T	7.2%	intergenic (‑28/+28)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,499	A→T	7.4%	intergenic (‑31/+25)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,502	C→T	7.6%	intergenic (‑34/+22)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	490,670	T→G	6.4%	D584A (GAC→GCC)	lptD ←	LPS‑assembly protein LptD
RA	495,966	A→T	7.2%	L23Q (CTG→CAG)	PP_0408 ←	hypothetical protein
RA	495,969	G→C	7.4%	A22G (GCC→GGC)	PP_0408 ←	hypothetical protein
RA	497,697	G→T	7.2%	L523L (CTG→CTT)	PP_0409 →	two‑component system sensor histidine kinase
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	501,419	A→T	6.2%	K268M (AAG→ATG)	PP_0412 →	polyamine ABC transportersubstrate‑binding protein
RA	501,423	G→C	6.7%	K269N (AAG→AAC)	PP_0412 →	polyamine ABC transportersubstrate‑binding protein
RA	501,427	A→T	6.1%	I271F (ATC→TTC)	PP_0412 →	polyamine ABC transportersubstrate‑binding protein
RA	501,674	A→T	7.3%	intergenic (+23/‑38)	PP_0412 → / → PP_0413	polyamine ABC transportersubstrate‑binding protein/polyamine ABC transporter permease
RA	502,121	A→T	7.5%	Y137F (TAT→TTT)	PP_0413 →	polyamine ABC transporter permease
RA	502,123	A→T	7.8%	K138* (AAA→TAA)	PP_0413 →	polyamine ABC transporter permease
RA	503,825	Δ1 bp	8.9%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,831	A→T	7.9%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,832	A→T	7.9%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	522,571	G→T	6.3%	L52L (CTC→CTA)	PP_0435 ←	M23/M37 family peptidase
RA	524,349	G→C	6.8%	intergenic (+216/‑600)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,352	G→C	8.8%	intergenic (+219/‑597)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	534,067	T→G	5.6%	intergenic (+8/‑37)	PP_t04 → / → secE	tRNA‑Trp/protein translocase subunit SecE
RA	534,068	C→A	5.5%	intergenic (+9/‑36)	PP_t04 → / → secE	tRNA‑Trp/protein translocase subunit SecE
RA	534,074	G→A	5.6%	intergenic (+15/‑30)	PP_t04 → / → secE	tRNA‑Trp/protein translocase subunit SecE
RA	537,572	G→T	8.7%	intergenic (+102/‑51)	PP_mr07 → / → rpoB	P26 ncRNA/DNA‑directed RNA polymerase subunit beta
RA	537,579	C→G	8.4%	intergenic (+109/‑44)	PP_mr07 → / → rpoB	P26 ncRNA/DNA‑directed RNA polymerase subunit beta
RA	546,698	A→T	5.9%	K17* (AAG→TAG) ‡	rpsG →	30S ribosomal protein S7
RA	546,700	G→C	6.9%	K17N (AAG→AAC) ‡	rpsG →	30S ribosomal protein S7
RA	546,702	A→T	5.7%	Y18F (TAC→TTC)	rpsG →	30S ribosomal protein S7
RA	548,803	A→C	6.4%	E551D (GAA→GAC)	fusA →	elongation factor G 1
RA	548,804	G→T	6.4%	V552F (GTC→TTC)	fusA →	elongation factor G 1
RA	550,549	C→G	9.0%	intergenic (+30/‑112)	tufB → / → rpsJ	elongation factor Tu‑B/30S ribosomal protein S10
RA	554,152:1	+C	11.6%	coding (92/714 nt)	rpsC →	30S ribosomal protein S3
RA	554,157	Δ1 bp	11.6%	coding (97/714 nt)	rpsC →	30S ribosomal protein S3
RA	555,765	T→G	5.8%	S28A (TCG→GCG)	rplN →	50S ribosomal protein L14
RA	556,978	C→T	5.2%	R9R (CGC→CGT)	rpsN →	30S ribosomal protein S14
RA	556,986	A→C	6.0%	K12T (AAG→ACG)	rpsN →	30S ribosomal protein S14
RA	556,997	A→G	5.3%	T16A (ACG→GCG)	rpsN →	30S ribosomal protein S14
RA	563,005	C→A	5.4%	P30T (CCT→ACT) ‡	rpoA →	DNA‑directed RNA polymerase subunit alpha
RA	563,006	C→G	5.6%	P30R (CCT→CGT) ‡	rpoA →	DNA‑directed RNA polymerase subunit alpha
RA	563,007	T→G	5.7%	P30P (CCT→CCG) ‡	rpoA →	DNA‑directed RNA polymerase subunit alpha
RA	585,109	T→A	8.0%	Q49H (CAA→CAT)	ansA ←	type 1 L‑asparaginase
RA	585,116	T→C	5.6%	Q47R (CAG→CGG) ‡	ansA ←	type 1 L‑asparaginase
RA	585,117	G→C	5.2%	Q47E (CAG→GAG) ‡	ansA ←	type 1 L‑asparaginase
RA	585,118	G→A	5.5%	P46P (CCC→CCT)	ansA ←	type 1 L‑asparaginase
RA	585,125	T→A	5.6%	N44I (AAT→ATT)	ansA ←	type 1 L‑asparaginase
RA	588,992	C→T	7.0%	intergenic (‑347/‑885)	PP_0498 ← / → PP_0500	hypothetical protein/dTDP‑4‑rhamnose reductase‑like protein
RA	598,658	A→C	5.5%	F96C (TTT→TGT)	trx ←	thioredoxin
RA	607,378	T→A	5.9%	R94R (CGT→CGA)	ribA →	GTP cyclohydrolase II
RA	607,379	G→T	6.4%	G95C (GGC→TGC)	ribA →	GTP cyclohydrolase II
RA	607,382	A→C	7.3%	I96L (ATC→CTC) ‡	ribA →	GTP cyclohydrolase II
RA	607,383	T→A	6.3%	I96N (ATC→AAC) ‡	ribA →	GTP cyclohydrolase II
RA	628,905	T→C	8.1%	A431A (GCA→GCG)	eutB ←	ethanolamine ammonia‑lyase subunit alpha
RA	648,287	A→C	13.7%	intergenic (+56/+35)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	652,764	G→C	7.5%	intergenic (‑101/+17)	dsbD‑I ← / ← ctpL	thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL
RA	661,702	G→A	9.9%	A418V (GCG→GTG)	PP_0569 ←	MATE efflux family protein
RA	670,785	C→T	9.2%	Q743* (CAG→TAG) ‡	pbpC →	peptidoglycan glycosyltransferase
RA	670,786	A→G	9.3%	Q743R (CAG→CGG) ‡	pbpC →	peptidoglycan glycosyltransferase
RA	672,887	G→T	8.7%	A211A (GCC→GCA)	PP_0574 ←	LuxR family transcriptional regulator
RA	672,892	T→A	9.2%	I210F (ATC→TTC)	PP_0574 ←	LuxR family transcriptional regulator
RA	675,589	C→G	6.3%	G37A (GGC→GCC)	PP_0577 ←	hypothetical protein
RA	675,591	A→T	6.3%	A36A (GCT→GCA)	PP_0577 ←	hypothetical protein
RA	684,833	C→T	5.5%	E472K (GAA→AAA)	cadA‑II ←	cadmium translocating P‑type ATPase
RA	684,897	C→T	5.5%	T450T (ACG→ACA)	cadA‑II ←	cadmium translocating P‑type ATPase
RA	697,225	C→G	6.6%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	6.7%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,722	A→G	51.8%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	18.4%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	18.6%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	19.6%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	706,842	C→G	6.0%	intergenic (+18/+228)	PP_0599 → / ← rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
RA	706,845	G→T	5.6%	intergenic (+21/+225)	PP_0599 → / ← rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
RA	706,846	C→G	5.7%	intergenic (+22/+224)	PP_0599 → / ← rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
RA	708,502	G→T	10.0%	E302* (GAG→TAG) ‡	murJ →	lipid II flippase
RA	708,504	G→C	10.0%	E302D (GAG→GAC) ‡	murJ →	lipid II flippase
RA	708,506	A→C	9.1%	Y303S (TAC→TCC)	murJ →	lipid II flippase
RA	726,621	C→T	8.5%	E45K (GAA→AAA)	PP_0620 ←	GntR family transcriptional regulator
RA	726,622	G→C	8.4%	F44L (TTC→TTG) ‡	PP_0620 ←	GntR family transcriptional regulator
RA	726,623	A→G	8.9%	F44S (TTC→TCC) ‡	PP_0620 ←	GntR family transcriptional regulator
RA	728,809	G→A	5.8%	G100R (GGG→AGG)	rluD →	23S rRNA pseudouridine(1911/1915/1917) synthase
RA	733,244	A→T	5.5%	intergenic (+219/‑144)	clpB → / → PP_t07	chaperone protein ClpB/tRNA‑Asn
RA	733,245	A→G	5.9%	intergenic (+220/‑143)	clpB → / → PP_t07	chaperone protein ClpB/tRNA‑Asn
RA	733,248	C→T	5.9%	intergenic (+223/‑140)	clpB → / → PP_t07	chaperone protein ClpB/tRNA‑Asn
RA	733,249	A→T	5.9%	intergenic (+224/‑139)	clpB → / → PP_t07	chaperone protein ClpB/tRNA‑Asn
RA	733,645	A→T	6.7%	intergenic (+19/‑28)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,646	A→T	6.7%	intergenic (+20/‑27)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,647	A→T	6.8%	intergenic (+21/‑26)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	743,460	A→G	7.9%	intergenic (+139/+135)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	756,953	G→A	5.7%	L52L (CTG→CTA)	PP_0647 →	membrane protein
RA	772,750	T→G	5.4%	L138R (CTC→CGC)	PP_0664 →	homoserine dehydrogenase
RA	780,556	A→C	5.4%	intergenic (‑86/+36)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	781,061	Δ1 bp	5.5%	coding (785/1254 nt)	glyA‑II ←	serine hydroxymethyltransferase
RA	781,067	T→A	5.6%	Q260L (CAG→CTG)	glyA‑II ←	serine hydroxymethyltransferase
RA	797,982	T→G	8.3%	intergenic (+40/‑46)	PP_0683 → / → fklB‑I	hypothetical protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	797,983	T→A	8.3%	intergenic (+41/‑45)	PP_0683 → / → fklB‑I	hypothetical protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	797,986	T→A	8.2%	intergenic (+44/‑42)	PP_0683 → / → fklB‑I	hypothetical protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	797,987	C→A	9.3%	intergenic (+45/‑41)	PP_0683 → / → fklB‑I	hypothetical protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	801,355	A→G	5.3%	intergenic (+28/‑161)	rpmA → / → obg	50S ribosomal protein L27/GTPase Obg
RA	801,356	T→C	5.3%	intergenic (+29/‑160)	rpmA → / → obg	50S ribosomal protein L27/GTPase Obg
RA	801,357	G→A	5.2%	intergenic (+30/‑159)	rpmA → / → obg	50S ribosomal protein L27/GTPase Obg
RA	801,358	C→T	5.2%	intergenic (+31/‑158)	rpmA → / → obg	50S ribosomal protein L27/GTPase Obg
RA	802,770	T→C	16.0%	intergenic (+28/‑58)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,771	C→A	15.9%	intergenic (+29/‑57)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,772	T→G	16.1%	intergenic (+30/‑56)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,773	G→A	16.2%	intergenic (+31/‑55)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	804,480	A→G	7.1%	intergenic (+76/+18)	PP_0692 → / ← PP_0693	hypothetical protein/hypothetical protein
RA	813,434	A→G	5.5%	L317L (TTG→CTG)	PP_0700 ←	transmembrane sensor
RA	813,440	A→G	5.4%	L315L (TTG→CTG)	PP_0700 ←	transmembrane sensor
RA	820,416	A→C	5.6%	K299T (AAG→ACG)	ada →	fused O(6)‑alkylguanine DNA alkyltransferase/transcriptional activator
RA	833,979	C→G	6.1%	H219D (CAC→GAC)	PP_0717 →	membrane protein
RA	835,966	G→C	6.8%	T38S (ACC→AGC)	PP_0718 ←	sulfate transporter
RA	835,968	G→C	6.8%	L37L (CTC→CTG)	PP_0718 ←	sulfate transporter
RA	838,215	C→G	6.4%	E161D (GAG→GAC)	rplY ←	50S ribosomal protein L25/general stress protein Ctc
RA	848,503	G→A	12.5%	L23F (CTT→TTT)	PP_0730 ←	hypothetical protein
RA	848,505	C→G	12.3%	R22P (CGG→CCG)	PP_0730 ←	hypothetical protein
RA	848,507	T→C	12.7%	K21K (AAA→AAG)	PP_0730 ←	hypothetical protein
RA	852,171	A→T	6.1%	Q317L (CAG→CTG)	hemA →	glutamyl‑tRNA reductase
RA	853,955	G→C	5.2%	L126L (CTG→CTC)	prmC →	release factor‑(glutamine‑N5) methyltransferase
RA	853,959	A→G	5.4%	S128G (AGC→GGC)	prmC →	release factor‑(glutamine‑N5) methyltransferase
RA	853,962	G→C	5.4%	E129Q (GAG→CAG)	prmC →	release factor‑(glutamine‑N5) methyltransferase
RA	863,898	T→A	11.5%	intergenic (+15/+21)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	863,899	T→A	11.5%	intergenic (+16/+20)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	863,900	T→A	11.4%	intergenic (+17/+19)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	892,014	C→G	5.4%	R567R (CGG→CGC) ‡	pta ←	phosphate acetyltransferase
RA	892,015	C→G	5.4%	R567P (CGG→CCG) ‡	pta ←	phosphate acetyltransferase
RA	893,926	G→A	9.7%	D41D (GAC→GAT)	PP_0775 ←	hypothetical protein
RA	895,198	G→C	5.7%	intergenic (+38/+26)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,201	T→C	5.9%	intergenic (+41/+23)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,207	G→C	5.9%	intergenic (+47/+17)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,210	G→C	6.0%	intergenic (+50/+14)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,216	G→A	6.0%	intergenic (+56/+8)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,219	G→C	6.2%	intergenic (+59/+5)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	918,981	A→G	5.9%	L40P (CTG→CCG)	opdC ←	histidine‑specific outer membrane porin D
RA	919,672	G→C	6.7%	intergenic (‑143/+48)	PP_5458 ← / ← PP_0800	hypothetical protein/hypothetical protein
RA	924,319	T→C	11.1%	T292A (ACG→GCG)	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	924,320	C→G	8.8%	A291A (GCG→GCC) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	924,321	G→A	8.7%	A291V (GCG→GTG) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	928,851	G→C	9.6%	P5591A (CCT→GCT)	PP_0806 ←	surface adhesion protein
RA	928,853	G→C	7.7%	P5590R (CCG→CGG)	PP_0806 ←	surface adhesion protein
RA	928,855	G→C	7.7%	S5589R (AGC→AGG)	PP_0806 ←	surface adhesion protein
RA	931,765	C→T	7.1%	G4619G (GGG→GGA)	PP_0806 ←	surface adhesion protein
RA	932,600	G→A	7.8%	S4341L (TCG→TTG)	PP_0806 ←	surface adhesion protein
RA	932,603	A→G	8.0%	V4340A (GTG→GCG) ‡	PP_0806 ←	surface adhesion protein
RA	932,604	C→T	8.0%	V4340M (GTG→ATG) ‡	PP_0806 ←	surface adhesion protein
RA	932,607	T→C	8.3%	N4339D (AAC→GAC)	PP_0806 ←	surface adhesion protein
RA	932,846	A→G	8.6%	V4259A (GTG→GCG)	PP_0806 ←	surface adhesion protein
RA	942,274	A→G	7.0%	L1116L (CTT→CTC)	PP_0806 ←	surface adhesion protein
RA	944,826	A→T	7.7%	S266T (TCG→ACG)	PP_0806 ←	surface adhesion protein
RA	944,831	G→A	8.3%	P264L (CCC→CTC)	PP_0806 ←	surface adhesion protein
RA	953,229	A→G	7.0%	H13R (CAC→CGC)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,549	A→C	6.7%	I120L (ATC→CTC)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,552	T→A	6.5%	Y121N (TAT→AAT) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,553	A→T	6.1%	Y121F (TAT→TTT) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,554	T→A	6.6%	Y121* (TAT→TAA) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,557	G→T	6.4%	E122D (GAG→GAT)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	955,557	A→G	8.3%	T67A (ACC→GCC)	alaC →	aminotransferase
RA	956,583	G→T	8.6%	intergenic (+16/‑98)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	956,585	A→C	7.6%	intergenic (+18/‑96)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	964,477	T→C	6.2%	L95L (TTG→CTG) ‡	phnE →	phosphonate ABC transporter permease
RA	964,478	T→A	6.1%	L95* (TTG→TAG) ‡	phnE →	phosphonate ABC transporter permease
RA	964,481	T→A	6.5%	L96Q (CTG→CAG) ‡	phnE →	phosphonate ABC transporter permease
RA	964,482	G→A	6.6%	L96L (CTG→CTA) ‡	phnE →	phosphonate ABC transporter permease
RA	965,227	T→C	6.1%	M70T (ATG→ACG)	ptxC →	phosphonate transport system permease PtxC
RA	966,595	A→T	8.7%	L41* (TTG→TAG) ‡	PP_0828 ←	membrane protein
RA	966,596	A→T	7.7%	L41M (TTG→ATG) ‡	PP_0828 ←	membrane protein
RA	972,269	C→G	6.0%	R187R (CGC→CGG)	secD →	protein translocase subunit SecD
RA	980,813	G→A	6.6%	E85E (GAG→GAA)	hscB →	DnaJ‑like molecular chaperone
RA	980,818	C→G	7.2%	T87R (ACG→AGG)	hscB →	DnaJ‑like molecular chaperone
RA	980,823	C→G	5.5%	H89D (CAC→GAC) ‡	hscB →	DnaJ‑like molecular chaperone
RA	980,824	A→T	5.5%	H89L (CAC→CTC) ‡	hscB →	DnaJ‑like molecular chaperone
RA	980,825	C→G	5.5%	H89Q (CAC→CAG) ‡	hscB →	DnaJ‑like molecular chaperone
RA	980,830	C→G	6.8%	P91R (CCT→CGT)	hscB →	DnaJ‑like molecular chaperone
RA	990,583	A→C	5.6%	D155A (GAC→GCC)	PP_0856 →	lipoprotein
RA	990,590	C→G	5.5%	R157R (CGC→CGG)	PP_0856 →	lipoprotein
RA	990,591	C→G	5.5%	L158V (CTG→GTG) ‡	PP_0856 →	lipoprotein
RA	990,592	T→C	5.4%	L158P (CTG→CCG) ‡	PP_0856 →	lipoprotein
RA	990,598	G→T	5.1%	G160V (GGC→GTC)	PP_0856 →	lipoprotein
RA	999,625	C→G	7.9%	G165A (GGC→GCC)	PP_0861 ←	outer membrane ferric siderophore receptor
RA	1,004,526	A→T	7.5%	Q184L (CAG→CTG)	PP_0866 →	transmembrane sensor
RA	1,011,479	T→A	8.4%	intergenic (‑417/‑110)	PP_0871 ← / → prfC	glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3
RA	1,013,228	A→T	11.0%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,234	C→A	12.6%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,235	A→T	12.9%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,241	G→C	12.3%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	12.5%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	13.7%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	13.1%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	12.2%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,291	G→A	5.9%	intergenic (+119/+12)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,015,711	C→G	7.0%	S177T (AGC→ACC)	PP_0875 ←	hypothetical protein
RA	1,034,086	G→A	6.7%	E41E (GAG→GAA)	PP_0892 →	phospholipase family protein
RA	1,039,262	G→C	6.7%	R45G (CGC→GGC)	PP_0897 ←	class 1 fumarate hydratase
RA	1,039,266	A→T	6.5%	A43A (GCT→GCA)	PP_0897 ←	class 1 fumarate hydratase
RA	1,039,270	G→C	6.6%	P42R (CCT→CGT)	PP_0897 ←	class 1 fumarate hydratase
RA	1,045,258	T→C	8.7%	intergenic (+31/+75)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,045,262	G→A	8.8%	intergenic (+35/+71)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,045,265	T→C	8.9%	intergenic (+38/+68)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,045,269	G→A	9.8%	intergenic (+42/+64)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,057,570	C→A	6.2%	V168L (GTG→TTG)	PP_0914 ←	GGDEF domain‑containing protein
RA	1,057,575	T→G	7.7%	N166T (AAC→ACC)	PP_0914 ←	GGDEF domain‑containing protein
RA	1,066,338	T→C	5.0%	S88G (AGC→GGC)	PP_0924 ←	hypothetical protein
RA	1,070,246:1	+G	91.4%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,246:2	+A	91.4%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,260	G→C	8.1%	intergenic (+60/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,263	G→C	7.6%	intergenic (+63/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,076,738	G→C	5.3%	Q39H (CAG→CAC)	mreC →	cell shape‑determining protein MreC
RA	1,085,001	T→A	5.1%	L276M (TTG→ATG) ‡	PP_0939 →	carbon‑nitrogen hydrolase family protein
RA	1,085,002	T→C	6.4%	L276S (TTG→TCG) ‡	PP_0939 →	carbon‑nitrogen hydrolase family protein
RA	1,085,006	G→C	5.2%	R277R (CGG→CGC)	PP_0939 →	carbon‑nitrogen hydrolase family protein
RA	1,086,497	G→A	10.1%	intergenic (+28/+30)	tldD → / ← PP_0941	microcin B17 maturation protease/ribosome associated protein
RA	1,086,499	A→G	10.2%	intergenic (+30/+28)	tldD → / ← PP_0941	microcin B17 maturation protease/ribosome associated protein
RA	1,086,500	C→T	9.9%	intergenic (+31/+27)	tldD → / ← PP_0941	microcin B17 maturation protease/ribosome associated protein
RA	1,086,502	T→C	9.8%	intergenic (+33/+25)	tldD → / ← PP_0941	microcin B17 maturation protease/ribosome associated protein
RA	1,086,684	C→A	10.1%	R122L (CGC→CTC) ‡	PP_0941 ←	ribosome associated protein
RA	1,086,685	G→C	10.2%	R122G (CGC→GGC) ‡	PP_0941 ←	ribosome associated protein
RA	1,086,692	G→C	9.6%	D119E (GAC→GAG) ‡	PP_0941 ←	ribosome associated protein
RA	1,086,693	T→G	11.3%	D119A (GAC→GCC) ‡	PP_0941 ←	ribosome associated protein
RA	1,115,376	A→C	5.2%	L819R (CTG→CGG) ‡	valS ←	valine‑‑tRNA ligase
RA	1,115,377	G→C	5.2%	L819V (CTG→GTG) ‡	valS ←	valine‑‑tRNA ligase
RA	1,123,420	A→C	6.6%	noncoding (381/398 nt)	PP_mr13 ←	cspA regulatory region
RA	1,123,421	C→A	6.5%	noncoding (380/398 nt)	PP_mr13 ←	cspA regulatory region
RA	1,123,423	T→G	7.0%	noncoding (378/398 nt)	PP_mr13 ←	cspA regulatory region
RA	1,123,938	T→A	9.7%	intergenic (‑138/+83)	PP_mr13 ← / ← gcvT‑I	cspA regulatory region/aminomethyltransferase
RA	1,123,943	T→A	9.4%	intergenic (‑143/+78)	PP_mr13 ← / ← gcvT‑I	cspA regulatory region/aminomethyltransferase
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,135,613	T→G	8.5%	E454D (GAA→GAC) ‡	PP_0997 ←	sigma‑54 dependent transcriptional regulator/sensory box protein
RA	1,135,614	T→A	8.8%	E454V (GAA→GTA) ‡	PP_0997 ←	sigma‑54 dependent transcriptional regulator/sensory box protein
RA	1,135,615	C→A	8.5%	E454* (GAA→TAA) ‡	PP_0997 ←	sigma‑54 dependent transcriptional regulator/sensory box protein
RA	1,145,433	C→T	11.4%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,440	G→A	12.0%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,441	T→C	12.0%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,448	A→G	7.9%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,155,451	A→T	8.0%	E203D (GAA→GAT)	PP_1013 →	sensor histidine kinase
RA	1,155,453	G→T	8.0%	R204L (CGC→CTC) ‡	PP_1013 →	sensor histidine kinase
RA	1,155,454	C→G	8.0%	R204R (CGC→CGG) ‡	PP_1013 →	sensor histidine kinase
RA	1,155,458	C→G	8.3%	P206A (CCG→GCG)	PP_1013 →	sensor histidine kinase
RA	1,155,463	C→G	8.6%	R207R (CGC→CGG)	PP_1013 →	sensor histidine kinase
RA	1,155,467	C→G	8.1%	Q209E (CAG→GAG) ‡	PP_1013 →	sensor histidine kinase
RA	1,155,468	A→C	8.0%	Q209P (CAG→CCG) ‡	PP_1013 →	sensor histidine kinase
RA	1,155,470	A→T	8.0%	I210F (ATC→TTC)	PP_1013 →	sensor histidine kinase
RA	1,160,444	C→G	14.3%	L86V (CTG→GTG) ‡	gtsC →	mannose/glucose ABC transporter permease
RA	1,160,445	T→A	14.3%	L86Q (CTG→CAG) ‡	gtsC →	mannose/glucose ABC transporter permease
RA	1,160,450	T→A	14.2%	S88T (TCC→ACC) ‡	gtsC →	mannose/glucose ABC transporter permease
RA	1,160,451	C→G	14.3%	S88C (TCC→TGC) ‡	gtsC →	mannose/glucose ABC transporter permease
RA	1,173,012	T→G	10.8%	E14A (GAG→GCG)	xseA ←	exodeoxyribonuclease 7 large subunit
RA	1,173,015	C→A	10.7%	R13L (CGC→CTC)	xseA ←	exodeoxyribonuclease 7 large subunit
RA	1,182,865	T→G	6.0%	intergenic (+32/+62)	tadA → / ← mltF	tRNA adenosine(34) deaminase TadA/membrane‑bound lytic murein transglycosylase F
RA	1,182,874	T→A	5.6%	intergenic (+41/+53)	tadA → / ← mltF	tRNA adenosine(34) deaminase TadA/membrane‑bound lytic murein transglycosylase F
RA	1,182,885	T→A	5.9%	intergenic (+52/+42)	tadA → / ← mltF	tRNA adenosine(34) deaminase TadA/membrane‑bound lytic murein transglycosylase F
RA	1,182,887	T→C	5.2%	intergenic (+54/+40)	tadA → / ← mltF	tRNA adenosine(34) deaminase TadA/membrane‑bound lytic murein transglycosylase F
RA	1,182,894	C→A	6.6%	intergenic (+61/+33)	tadA → / ← mltF	tRNA adenosine(34) deaminase TadA/membrane‑bound lytic murein transglycosylase F
RA	1,182,900	T→C	7.5%	intergenic (+67/+27)	tadA → / ← mltF	tRNA adenosine(34) deaminase TadA/membrane‑bound lytic murein transglycosylase F
RA	1,189,035	A→G	14.7%	intergenic (+25/+17)	PP_1038 → / ← tatC‑I	hypothetical protein/Sec‑independent protein translocase protein
RA	1,189,036	C→T	14.7%	intergenic (+26/+16)	PP_1038 → / ← tatC‑I	hypothetical protein/Sec‑independent protein translocase protein
RA	1,193,928	T→A	6.8%	L23M (TTG→ATG) ‡	uxpA →	lipoprotein UxpA
RA	1,193,929	T→A	6.8%	L23* (TTG→TAG) ‡	uxpA →	lipoprotein UxpA
RA	1,194,641	G→A	5.8%	T260T (ACG→ACA)	uxpA →	lipoprotein UxpA
RA	1,194,646	C→G	5.6%	P262R (CCC→CGC) ‡	uxpA →	lipoprotein UxpA
RA	1,194,647	C→G	5.6%	P262P (CCC→CCG) ‡	uxpA →	lipoprotein UxpA
RA	1,195,095	G→C	5.1%	A412P (GCA→CCA)	uxpA →	lipoprotein UxpA
RA	1,209,720	G→C	6.9%	W110S (TGG→TCG)	ytnA →	amino acid permease YtnA
RA	1,224,601	A→C	5.4%	M26R (ATG→AGG)	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,224,606	T→A	5.6%	K24N (AAA→AAT) ‡	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,224,607	T→C	5.6%	K24R (AAA→AGA) ‡	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,224,611	G→T	5.8%	L23I (CTC→ATC)	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,241,962:1	+T	7.2%	intergenic (+27/+31)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,241,967	Δ1 bp	7.2%	intergenic (+32/+26)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,242,528	G→T	9.4%	intergenic (‑62/+138)	bfr‑II ← / ← PP_1083	bacterioferritin/(2Fe‑2S)‑binding protein
RA	1,242,531	T→A	8.2%	intergenic (‑65/+135)	bfr‑II ← / ← PP_1083	bacterioferritin/(2Fe‑2S)‑binding protein
RA	1,242,534	A→C	7.3%	intergenic (‑68/+132)	bfr‑II ← / ← PP_1083	bacterioferritin/(2Fe‑2S)‑binding protein
RA	1,243,739	T→C	5.6%	intergenic (+28/+71)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,740	C→G	6.6%	intergenic (+29/+70)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,741	G→A	5.7%	intergenic (+30/+69)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,742	T→A	5.7%	intergenic (+31/+68)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,245,330	G→C	10.0%	A66A (GCC→GCG)	pyrC ←	dihydroorotase
RA	1,245,334	G→C	10.6%	P65R (CCG→CGG)	pyrC ←	dihydroorotase
RA	1,245,338	G→C	10.4%	R64G (CGC→GGC)	pyrC ←	dihydroorotase
RA	1,250,107	T→A	5.8%	E204V (GAG→GTG)	nth ←	DNA glycosylase/apyrimidinic (AP) lyase
RA	1,252,526	A→G	8.0%	V95A (GTC→GCC)	PP_1095 ←	electron transport complex protein
RA	1,252,529	C→A	7.8%	S94I (AGT→ATT) ‡	PP_1095 ←	electron transport complex protein
RA	1,252,530	T→G	7.8%	S94R (AGT→CGT) ‡	PP_1095 ←	electron transport complex protein
RA	1,252,533	C→T	8.2%	A93T (GCA→ACA)	PP_1095 ←	electron transport complex protein
RA	1,263,132	G→C	6.7%	S425R (AGC→AGG)	PP_1105 ←	ATP‑dependent DNA ligase
RA	1,275,084	G→C	9.1%	intergenic (‑281/+31)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,275,087	G→C	12.8%	intergenic (‑284/+28)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,278,482	A→T	8.9%	intergenic (‑309/+254)	PP_5465 ← / ← PP_1117	hypothetical protein/hypothetical protein
RA	1,278,483	A→T	8.8%	intergenic (‑310/+253)	PP_5465 ← / ← PP_1117	hypothetical protein/hypothetical protein
RA	1,278,484	A→T	8.9%	intergenic (‑311/+252)	PP_5465 ← / ← PP_1117	hypothetical protein/hypothetical protein
RA	1,316,619	A→T	5.2%	S13C (AGC→TGC)	PP_1150 →	membrane protein
RA	1,327,121	C→T	60.0%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,337,036	C→A	7.4%	L137I (CTC→ATC)	gstA →	glutathione S‑transferase GstA
RA	1,342,251	C→T	8.6%	intergenic (‑35/+20)	PP_1166 ← / ← PP_1167	DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM
RA	1,342,252	A→T	8.0%	intergenic (‑36/+19)	PP_1166 ← / ← PP_1167	DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM
RA	1,342,253	A→G	8.0%	intergenic (‑37/+18)	PP_1166 ← / ← PP_1167	DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM
RA	1,350,501	T→A	6.7%	K11N (AAA→AAT) ‡	PP_1176 ←	hypothetical protein
RA	1,350,502	T→A	6.6%	K11I (AAA→ATA) ‡	PP_1176 ←	hypothetical protein
RA	1,356,405	G→C	7.0%	G94A (GGC→GCC)	PP_1181 →	two‑component system response regulator
RA	1,366,548	T→G	6.2%	E51A (GAG→GCG)	PP_1191 ←	S4 domain‑containing protein
RA	1,376,321	A→T	6.6%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,322	G→C	8.9%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,382,326	A→T	6.7%	intergenic (+12/+15)	dinB → / ← PP_1204	DNA polymerase IV/lipoprotein
RA	1,388,037	G→T	8.6%	G151G (GGC→GGA)	PP_1209 ←	cold‑shock protein
RA	1,388,044	T→A	10.0%	D149V (GAC→GTC)	PP_1209 ←	cold‑shock protein
RA	1,388,051	A→C	7.9%	S147A (TCC→GCC)	PP_1209 ←	cold‑shock protein
RA	1,400,872	C→A	5.5%	intergenic (+35/‑134)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,874	A→T	5.5%	intergenic (+37/‑132)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,876	T→G	5.5%	intergenic (+39/‑130)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,403,591	T→C	7.8%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,410,937	A→G	6.2%	I333T (ATC→ACC)	PP_1232 ←	hypothetical protein
RA	1,412,010	C→T	6.9%	intergenic (‑76/‑47)	PP_1232 ← / → tusA‑I	hypothetical protein/sulfurtransferase
RA	1,416,862	G→A	10.9%	R37Q (CGG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,868	T→A	10.8%	L39Q (CTG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,874	T→C	10.9%	L41P (CTG→CCG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,419,548:1	+C	100%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,425,661	G→A	9.7%	intergenic (+63/‑442)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,428,975	A→G	6.7%	Y359C (TAC→TGC) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,976	C→G	6.6%	Y359* (TAC→TAG) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,977	C→G	6.9%	P360A (CCA→GCA) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,978	C→T	6.9%	P360L (CCA→CTA) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,437,042	C→T	5.4%	G8S (GGC→AGC)	PP_1257 ←	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
RA	1,453,974	C→G	5.8%	A203G (GCC→GGC)	PP_1272 →	multidrug MFS transporter membrane fusion protein
RA	1,453,977	A→C	5.9%	D204A (GAT→GCT)	PP_1272 →	multidrug MFS transporter membrane fusion protein
RA	1,455,474	G→C	5.5%	S336S (TCG→TCC)	PP_1273 →	multidrug MFS transporter outer membrane protein
RA	1,457,139	G→C	7.0%	P114A (CCA→GCA)	PP_1275 ←	hypothetical protein
RA	1,457,146	G→A	11.6%	Y111Y (TAC→TAT)	PP_1275 ←	hypothetical protein
RA	1,457,149	T→C	11.6%	R110R (CGA→CGG)	PP_1275 ←	hypothetical protein
RA	1,458,117	T→G	8.8%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,119	A→T	10.0%	intergenic (+19/+21)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,121	C→A	10.1%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,469,808	A→G	13.0%	V112A (GTG→GCG)	algK ←	alginate biosynthesis protein AlgK
RA	1,469,811	A→T	13.0%	L111Q (CTG→CAG)	algK ←	alginate biosynthesis protein AlgK
RA	1,469,814	A→T	11.8%	L110Q (CTG→CAG)	algK ←	alginate biosynthesis protein AlgK
RA	1,469,817	C→T	12.1%	R109H (CGC→CAC)	algK ←	alginate biosynthesis protein AlgK
RA	1,474,995	T→G	7.2%	intergenic (‑775/+26)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,474,996	C→A	7.1%	intergenic (‑776/+25)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,496,816	T→C	7.8%	intergenic (+48/+24)	mdeA → / ← PP_1309	methionine gamma‑lyase/hypothetical protein
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,504,067	T→A	5.7%	intergenic (+34/‑229)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,068	T→A	6.0%	intergenic (+35/‑228)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,506,923	A→G	9.1%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,927	G→A	7.4%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,930	T→C	7.7%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,508,078	G→A	10.3%	intergenic (+17/+45)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,079	G→T	10.3%	intergenic (+18/+44)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,080	A→C	10.2%	intergenic (+19/+43)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,081	T→C	10.4%	intergenic (+20/+42)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,524,302	A→G	7.4%	T336A (ACC→GCC)	murG →	UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑ (pentapeptide) pyrophosphoryl‑undecaprenol N‑acetylglucosamine transferase
RA	1,524,306	C→A	7.5%	A337D (GCT→GAT) ‡	murG →	UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑ (pentapeptide) pyrophosphoryl‑undecaprenol N‑acetylglucosamine transferase
RA	1,524,307	T→G	7.9%	A337A (GCT→GCG) ‡	murG →	UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑ (pentapeptide) pyrophosphoryl‑undecaprenol N‑acetylglucosamine transferase
RA	1,524,311	C→T	8.1%	R339C (CGC→TGC)	murG →	UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑ (pentapeptide) pyrophosphoryl‑undecaprenol N‑acetylglucosamine transferase
RA	1,534,889	T→C	7.5%	intergenic (+80/‑103)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,898	A→G	6.9%	intergenic (+89/‑94)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,902	G→A	6.6%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,908	A→G	6.4%	intergenic (+99/‑84)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,910	C→A	6.5%	intergenic (+101/‑82)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,912	T→C	7.7%	intergenic (+103/‑80)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,544,489	C→A	22.4%	intergenic (+48/+66)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,492	G→C	20.1%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,494	C→G	17.3%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,499	C→G	17.6%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,501	G→C	17.5%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,504	T→G	17.9%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,551,282	G→T	11.7%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,551,285	A→C	10.0%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,555,144	A→G	6.1%	N406D (AAC→GAC)	sbcB →	exodeoxyribonuclease I
RA	1,561,410	G→A	5.2%	T227T (ACC→ACT)	pctA ←	methyl‑accepting chemotaxis protein PctA
RA	1,561,512	G→A	9.5%	N193N (AAC→AAT) ‡	pctA ←	methyl‑accepting chemotaxis protein PctA
RA	1,561,513	T→A	8.9%	N193I (AAC→ATC) ‡	pctA ←	methyl‑accepting chemotaxis protein PctA
RA	1,561,514	T→C	9.2%	N193D (AAC→GAC) ‡	pctA ←	methyl‑accepting chemotaxis protein PctA
RA	1,568,449	C→T	8.1%	G311G (GGC→GGT)	pcaK →	4‑hydroxybenzoate transporter
RA	1,568,909	C→T	7.2%	intergenic (+46/‑281)	pcaK → / → pcaF‑I	4‑hydroxybenzoate transporter/beta‑ketoadipyl‑CoA thiolase
RA	1,568,912	A→G	6.7%	intergenic (+49/‑278)	pcaK → / → pcaF‑I	4‑hydroxybenzoate transporter/beta‑ketoadipyl‑CoA thiolase
RA	1,575,198	G→A	6.2%	intergenic (‑184/+26)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,200	T→A	6.6%	intergenic (‑186/+24)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,201	T→A	6.6%	intergenic (‑187/+23)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,203	T→C	6.4%	intergenic (‑189/+21)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,581,266	G→T	100%	A44D (GCC→GAC)	ttgB ←	efflux pump membrane protein TtgB
RA	1,583,319	T→G	8.2%	Y170D (TAT→GAT)	ttgR →	HTH‑type transcriptional regulator TtgR
RA	1,591,982	C→A	11.1%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,987	T→G	12.5%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,594,484	A→C	11.2%	R313R (CGT→CGG)	kgtP ←	alpha‑ketoglutarate permease
RA	1,594,487	G→C	9.8%	R312R (CGC→CGG)	kgtP ←	alpha‑ketoglutarate permease
RA	1,594,490	G→T	9.8%	G311G (GGC→GGA)	kgtP ←	alpha‑ketoglutarate permease
RA	1,597,883	C→A	5.5%	Q293H (CAG→CAT)	dctB ←	C4‑dicarboxylate transport sensor protein
RA	1,612,649	T→A	5.2%	F149Y (TTT→TAT)	ung →	uracil‑DNA glycosylase
RA	1,623,383	G→A	5.9%	intergenic (‑27/+23)	PP_1422 ← / ← PP_1423	hypothetical protein/hypothetical protein
RA	1,625,207	G→T	30.9%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,625,208	A→C	30.7%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,629,456	A→C	6.2%	*322Y (TAA→TAC)	mucB →	sigma factor AlgU regulator MucB
RA	1,637,325	A→T	9.5%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,326	A→T	9.1%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,336	G→A	6.5%	intergenic (+45/+21)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,271	G→C	9.4%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,277	G→C	9.6%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,278	C→G	9.2%	intergenic (‑106/+46)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,279	G→C	9.5%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,285	G→C	9.1%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,644,836	G→T	9.1%	intergenic (‑95/+109)	lon‑I ← / ← gcd	DNA‑binding ATP‑dependent protease/quinoprotein glucose dehydrogenase
RA	1,644,837	C→G	9.7%	intergenic (‑96/+108)	lon‑I ← / ← gcd	DNA‑binding ATP‑dependent protease/quinoprotein glucose dehydrogenase
RA	1,644,838	A→C	9.5%	intergenic (‑97/+107)	lon‑I ← / ← gcd	DNA‑binding ATP‑dependent protease/quinoprotein glucose dehydrogenase
RA	1,652,524	G→A	8.3%	G1415G (GGC→GGT)	PP_1449 ←	hypothetical protein
RA	1,659,949	A→C	6.3%	D20A (GAC→GCC)	nudL →	NUDIX hydrolase
RA	1,670,626	T→C	6.1%	intergenic (+49/‑46)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,670,627	T→G	6.1%	intergenic (+50/‑45)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,670,628	C→A	6.1%	intergenic (+51/‑44)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,670,629	G→A	6.0%	intergenic (+52/‑43)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,677,629	A→G	6.6%	intergenic (+22/‑109)	thrC → / → PP_5471	threonine synthase/two‑component system response regulator
RA	1,677,630	G→C	6.4%	intergenic (+23/‑108)	thrC → / → PP_5471	threonine synthase/two‑component system response regulator
RA	1,682,419	C→G	5.1%	A313G (GCC→GGC)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,691,772	T→C	6.3%	intergenic (+39/‑132)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,773	C→G	6.2%	intergenic (+40/‑131)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,783	C→A	11.4%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,786	T→G	12.0%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,796	C→G	6.6%	intergenic (+63/‑108)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,797	G→A	6.8%	intergenic (+64/‑107)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,693,792	C→G	6.5%	R87R (CGC→CGG)	PP_1489 →	CheW domain‑containing protein
RA	1,698,753	C→T	7.4%	L167L (CTC→CTT)	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,698,754	G→C	7.6%	E168Q (GAA→CAA) ‡	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,698,755	A→G	7.7%	E168G (GAA→GGA) ‡	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,703,250	G→C	8.4%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	10.4%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,704,636	T→A	7.6%	M1M (TTG→ATG) †	PP_1499 →	hypothetical protein
RA	1,705,329	G→A	7.7%	A232T (GCC→ACC)	PP_1499 →	hypothetical protein
RA	1,706,336	T→G	5.8%	M134R (ATG→AGG)	PP_1500 →	lipoprotein
RA	1,706,340	C→A	6.0%	A135A (GCC→GCA)	PP_1500 →	lipoprotein
RA	1,707,230	G→C	5.3%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,951	T→A	11.9%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,952	T→A	10.5%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,715,481	G→T	7.9%	A143S (GCG→TCG)	PP_1510 →	carboxyvinyl‑carboxyphosphonate phosphorylmutase
RA	1,715,486	A→C	7.2%	R144R (CGA→CGC)	PP_1510 →	carboxyvinyl‑carboxyphosphonate phosphorylmutase
RA	1,715,776	C→T	6.3%	A241V (GCA→GTA)	PP_1510 →	carboxyvinyl‑carboxyphosphonate phosphorylmutase
RA	1,741,930	C→G	10.2%	intergenic (‑18/+66)	PP_1538 ← / ← PP_1539	hypothetical protein/hypothetical protein
RA	1,741,935	C→G	11.7%	intergenic (‑23/+61)	PP_1538 ← / ← PP_1539	hypothetical protein/hypothetical protein
RA	1,774,627	T→G	7.5%	S604A (TCC→GCC) ‡	PP_1581 →	BNR domain‑containing protein
RA	1,774,628	C→G	6.9%	S604C (TCC→TGC) ‡	PP_1581 →	BNR domain‑containing protein
RA	1,774,629	C→A	6.9%	S604S (TCC→TCA) ‡	PP_1581 →	BNR domain‑containing protein
JC	1,780,067	Δ62 bp	21.4%	intergenic (+26/+19)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,784,031	C→G	5.6%	A16P (GCG→CCG)	glnD ←	uridylyltransferase
RA	1,784,032	C→G	5.5%	Q15H (CAG→CAC) ‡	glnD ←	uridylyltransferase
RA	1,784,033	T→C	5.5%	Q15R (CAG→CGG) ‡	glnD ←	uridylyltransferase
RA	1,786,022	T→A	5.4%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,023	T→A	5.4%	intergenic (+39/‑147)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,795,651	Δ1 bp	100%	coding (464/504 nt)	PP_1600 →	Skp‑like protein
RA	1,810,335	T→G	11.2%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,810,336	C→A	7.4%	intergenic (+97/‑72)	eno → / → ftsB	enolase/cell division protein
RA	1,814,593	C→A	5.3%	intergenic (+93/‑20)	frmC → / → ispF	S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase/2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
RA	1,814,595	C→G	5.2%	intergenic (+95/‑18)	frmC → / → ispF	S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase/2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
RA	1,814,597	T→G	5.1%	intergenic (+97/‑16)	frmC → / → ispF	S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase/2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
RA	1,819,789	Δ1 bp	7.3%	intergenic (+26/‑449)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,819,791	T→A	7.2%	intergenic (+28/‑447)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,819,795:1	+A	7.4%	intergenic (+32/‑443)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,819,796	T→C	7.3%	intergenic (+33/‑442)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,837,686	A→C	5.8%	K102T (AAG→ACG)	PP_1642 →	hypothetical protein
RA	1,838,196	C→G	6.4%	K125N (AAG→AAC)	PP_1643 ←	membrane protein
RA	1,840,007	T→C	6.6%	L135S (TTG→TCG)	PP_1646 →	thioredoxin
RA	1,845,783	T→C	12.7%	L25P (CTC→CCC)	pfeS‑II →	histidine kinase
RA	1,845,787	T→G	12.7%	S26R (AGT→AGG)	pfeS‑II →	histidine kinase
RA	1,845,792	C→A	12.1%	T28N (ACC→AAC)	pfeS‑II →	histidine kinase
RA	1,845,796	G→A	12.0%	W29* (TGG→TGA)	pfeS‑II →	histidine kinase
RA	1,891,701	G→T	7.2%	intergenic (‑124/‑58)	PP_1696 ← / → PP_1697	membrane protein/transcriptional regulator, GntR family
RA	1,900,704:1	+T	6.6%	coding (1255/4026 nt)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,900,710	Δ1 bp	6.8%	coding (1261/4026 nt)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,901,761	A→T	9.8%	D771V (GAC→GTC)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,904,604	T→A	7.1%	C287S (TGC→AGC)	nirB →	nitrite reductase large subunit
RA	1,927,771	C→T	6.4%	S193S (AGC→AGT)	PP_1727 →	GntR family transcriptional regulator
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,933,664	G→T	7.3%	R30R (CGC→CGA)	minD ←	MinC‑MinD‑MinE system ATPase
RA	1,939,498	G→A	6.6%	A89T (GCA→ACA)	PP_1739 →	membrane protein
RA	1,953,403	G→A	9.2%	R46R (CGC→CGT) ‡	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,953,405	G→C	6.9%	R46G (CGC→GGC) ‡	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,953,406	G→C	7.1%	T45T (ACC→ACG) ‡	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,953,408	T→C	6.9%	T45A (ACC→GCC) ‡	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,955,210	T→A	7.3%	intergenic (+40/‑153)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,962,565	A→C	8.1%	K276N (AAA→AAC)	PP_1760 →	ABC transporter ATP‑binding protein
RA	1,962,569	Δ1 bp	7.9%	coding (832/1833 nt)	PP_1760 →	ABC transporter ATP‑binding protein
RA	1,962,571	T→G	8.2%	D278E (GAT→GAG)	PP_1760 →	ABC transporter ATP‑binding protein
RA	1,962,581	C→A	7.8%	R282S (CGT→AGT) ‡	PP_1760 →	ABC transporter ATP‑binding protein
RA	1,962,582	G→C	7.8%	R282P (CGT→CCT) ‡	PP_1760 →	ABC transporter ATP‑binding protein
RA	1,962,583	T→G	8.0%	R282R (CGT→CGG) ‡	PP_1760 →	ABC transporter ATP‑binding protein
RA	1,962,588	G→C	8.2%	S284T (AGT→ACT)	PP_1760 →	ABC transporter ATP‑binding protein
RA	1,967,188	C→T	10.6%	intergenic (+58/+61)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,967,192	C→T	9.9%	intergenic (+62/+57)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,967,193	A→G	9.2%	intergenic (+63/+56)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,967,197	A→G	9.4%	intergenic (+67/+52)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,982,614	G→A	9.7%	R189H (CGC→CAC)	PP_1775 →	metallo‑beta‑lactamase family protein
RA	1,982,617	C→G	8.2%	P190R (CCG→CGG)	PP_1775 →	metallo‑beta‑lactamase family protein
RA	1,982,620	T→C	8.2%	V191A (GTG→GCG)	PP_1775 →	metallo‑beta‑lactamase family protein
RA	1,987,438	T→C	7.9%	D231D (GAT→GAC)	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,440	T→C	8.0%	L232S (TTG→TCG) ‡	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,441	G→A	8.1%	L232L (TTG→TTA) ‡	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,443	G→A	8.2%	S233N (AGT→AAT)	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,989,577	A→T	5.2%	H276L (CAC→CTC)	PP_1780 →	mannosyltransferase
RA	1,996,011	C→G	7.1%	intergenic (‑257/+28)	PP_mr26 ← / ← rfbC	C4 ncRNA/dTDP‑4‑dehydrorhamnose 3,5‑epimerase
RA	2,004,570	G→A	8.2%	intergenic (+60/+90)	PP_1787 → / ← PP_1788	hypothetical protein/hypothetical protein
RA	2,004,573	T→C	6.0%	intergenic (+63/+87)	PP_1787 → / ← PP_1788	hypothetical protein/hypothetical protein
RA	2,007,238	G→A	7.8%	L42L (CTG→TTG)	PP_1790 ←	acylneuraminate cytidylyltransferase
RA	2,007,239	T→C	7.3%	Q41Q (CAA→CAG)	PP_1790 ←	acylneuraminate cytidylyltransferase
RA	2,012,338	G→A	7.3%	Q562* (CAG→TAG)	PP_1793 ←	group 2 family glycosyl transferase
RA	2,012,339	T→C	7.3%	L561L (CTA→CTG)	PP_1793 ←	group 2 family glycosyl transferase
RA	2,023,407	G→T	8.2%	E147* (GAA→TAA) ‡	rmd →	oxidoreductase Rmd
RA	2,023,409	A→T	8.2%	E147D (GAA→GAT) ‡	rmd →	oxidoreductase Rmd
RA	2,023,411	A→C	7.9%	Y148S (TAC→TCC)	rmd →	oxidoreductase Rmd
RA	2,025,706	Δ1 bp	7.4%	coding (706/1110 nt)	wbpZ →	glycosyl transferase
RA	2,025,713	A→C	7.1%	Q238P (CAG→CCG) ‡	wbpZ →	glycosyl transferase
RA	2,025,714	G→T	6.9%	Q238H (CAG→CAT) ‡	wbpZ →	glycosyl transferase
RA	2,025,719:1	+T	7.6%	coding (719/1110 nt)	wbpZ →	glycosyl transferase
RA	2,029,111	T→C	7.2%	L284P (CTG→CCG)	wbpM →	polysaccharide biosynthesis protein
RA	2,029,115	A→C	6.8%	A285A (GCA→GCC)	wbpM →	polysaccharide biosynthesis protein
RA	2,029,117	G→C	6.8%	S286T (AGT→ACT)	wbpM →	polysaccharide biosynthesis protein
RA	2,029,119	G→T	7.0%	G287C (GGC→TGC)	wbpM →	polysaccharide biosynthesis protein
RA	2,029,123	G→A	7.2%	R288Q (CGG→CAG)	wbpM →	polysaccharide biosynthesis protein
RA	2,034,001	G→A	8.6%	E494E (GAG→GAA)	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,034,005	A→C	8.5%	K496Q (AAG→CAG) ‡	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,034,006	A→T	9.3%	K496M (AAG→ATG) ‡	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,034,007	G→T	7.3%	K496N (AAG→AAT) ‡	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,034,011	T→C	7.8%	F498L (TTC→CTC)	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,048,069	T→A	6.2%	intergenic (‑49/‑90)	PP_1820 ← / → PP_1821	benzoate transport protein/glutathione S‑transferase family protein
RA	2,048,071	G→C	6.3%	intergenic (‑51/‑88)	PP_1820 ← / → PP_1821	benzoate transport protein/glutathione S‑transferase family protein
RA	2,048,073	T→A	6.0%	intergenic (‑53/‑86)	PP_1820 ← / → PP_1821	benzoate transport protein/glutathione S‑transferase family protein
RA	2,049,303	G→T	6.5%	intergenic (‑32/+28)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,049,304	A→C	6.0%	intergenic (‑33/+27)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,052,784	G→T	8.9%	intergenic (+16/+34)	prmB → / ← PP_1828	N5‑glutamine S‑adenosyl‑L‑methionine‑dependent methyltransferase/hypothetical protein
RA	2,052,785	A→T	8.9%	intergenic (+17/+33)	prmB → / ← PP_1828	N5‑glutamine S‑adenosyl‑L‑methionine‑dependent methyltransferase/hypothetical protein
RA	2,052,786	A→C	8.9%	intergenic (+18/+32)	prmB → / ← PP_1828	N5‑glutamine S‑adenosyl‑L‑methionine‑dependent methyltransferase/hypothetical protein
RA	2,060,369	T→A	8.8%	N87I (AAC→ATC)	PP_1836 ←	ZIP family metal transporter
RA	2,060,372	A→T	7.6%	V86D (GTC→GAC)	PP_1836 ←	ZIP family metal transporter
RA	2,060,375	T→A	7.5%	D85V (GAT→GTT)	PP_1836 ←	ZIP family metal transporter
RA	2,060,707	G→A	8.9%	intergenic (‑79/‑48)	PP_1836 ← / → PP_1837	ZIP family metal transporter/hypothetical protein
RA	2,062,746	C→G	5.8%	P554R (CCG→CGG)	PP_1838 →	membrane protein
RA	2,087,333	C→G	19.2%	intergenic (+146/+772)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,334	C→G	19.2%	intergenic (+147/+771)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,091,357	A→G	8.8%	H228R (CAC→CGC)	deaD →	ATP‑dependent DEAD‑box RNA helicase DeaD
RA	2,091,360	C→T	9.0%	A229V (GCG→GTG)	deaD →	ATP‑dependent DEAD‑box RNA helicase DeaD
RA	2,092,380	G→A	10.2%	intergenic (+26/+65)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,382	T→C	10.0%	intergenic (+28/+63)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,385	G→A	9.8%	intergenic (+31/+60)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,387	T→C	9.8%	intergenic (+33/+58)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,094,033	G→T	6.0%	intergenic (+69/+29)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,094,034	A→C	5.9%	intergenic (+70/+28)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,094,035	A→G	5.7%	intergenic (+71/+27)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,099,155	G→C	8.1%	S245R (AGC→AGG)	PP_1875 ←	two‑component system sensor histidine kinase/response regulator
RA	2,102,999	C→G	5.1%	noncoding (35/76 nt)	PP_t23 →	tRNA‑Gly
RA	2,112,033	G→A	6.9%	N751N (AAC→AAT) ‡	PP_1882 ←	membrane protein
RA	2,112,034	T→A	5.4%	N751I (AAC→ATC) ‡	PP_1882 ←	membrane protein
RA	2,112,035	T→C	5.8%	N751D (AAC→GAC) ‡	PP_1882 ←	membrane protein
RA	2,121,033	C→T	8.3%	A728A (GCC→GCT)	PP_1885 →	hypothetical protein
RA	2,134,271	A→C	6.5%	intergenic (‑37/+32)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,134,278	G→T	8.4%	intergenic (‑44/+25)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,154,396	C→A	8.9%	G126W (GGG→TGG)	PP_1909 ←	septum formation protein
RA	2,166,235	G→T	5.3%	intergenic (‑79/‑702)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,193,116	A→C	7.8%	intergenic (+210/‑213)	PP_1938 → / → PP_1939	hypothetical protein/hypothetical protein
RA	2,193,117	A→C	7.3%	intergenic (+211/‑212)	PP_1938 → / → PP_1939	hypothetical protein/hypothetical protein
RA	2,193,120	G→T	7.8%	intergenic (+214/‑209)	PP_1938 → / → PP_1939	hypothetical protein/hypothetical protein
RA	2,193,121	G→T	7.9%	intergenic (+215/‑208)	PP_1938 → / → PP_1939	hypothetical protein/hypothetical protein
RA	2,199,063	A→T	7.1%	I275F (ATT→TTT)	purU‑III →	formyltetrahydrofolate deformylase
RA	2,224,235	G→C	10.3%	G104G (GGC→GGG)	PP_1962 ←	site‑specific recombinase
RA	2,242,290	T→C	9.1%	intergenic (+33/‑138)	PP_t30 → / → PP_1978	tRNA‑Glu/TetR family transcriptional regulator
RA	2,242,296	G→A	9.5%	intergenic (+39/‑132)	PP_t30 → / → PP_1978	tRNA‑Glu/TetR family transcriptional regulator
RA	2,242,297	C→A	9.4%	intergenic (+40/‑131)	PP_t30 → / → PP_1978	tRNA‑Glu/TetR family transcriptional regulator
RA	2,242,299	T→A	9.4%	intergenic (+42/‑129)	PP_t30 → / → PP_1978	tRNA‑Glu/TetR family transcriptional regulator
RA	2,242,301	T→G	9.5%	intergenic (+44/‑127)	PP_t30 → / → PP_1978	tRNA‑Glu/TetR family transcriptional regulator
RA	2,242,302	T→C	9.5%	intergenic (+45/‑126)	PP_t30 → / → PP_1978	tRNA‑Glu/TetR family transcriptional regulator
RA	2,242,308	G→A	10.2%	intergenic (+51/‑120)	PP_t30 → / → PP_1978	tRNA‑Glu/TetR family transcriptional regulator
RA	2,246,241	C→T	8.0%	intergenic (+30/+61)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,246,242	A→G	8.3%	intergenic (+31/+60)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,253,812	G→T	6.4%	G44V (GGC→GTC)	leuB →	3‑isopropylmalate dehydrogenase
RA	2,253,815	G→A	6.3%	G45D (GGT→GAT)	leuB →	3‑isopropylmalate dehydrogenase
RA	2,256,199	G→C	10.5%	intergenic (+259/‑445)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,266,894	T→C	8.6%	intergenic (+15/‑182)	dedD → / → cvpA	cell division protein/colicin V production membrane protein
RA	2,266,895	A→T	8.6%	intergenic (+16/‑181)	dedD → / → cvpA	cell division protein/colicin V production membrane protein
RA	2,266,896	G→A	8.5%	intergenic (+17/‑180)	dedD → / → cvpA	cell division protein/colicin V production membrane protein
RA	2,271,666	C→T	9.7%	intergenic (+50/‑50)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,271,667	A→G	9.7%	intergenic (+51/‑49)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,281,030	T→A	7.7%	intergenic (+88/‑149)	fadH → / → PP_2009	2,4‑dienoyl‑CoA reductase/1‑aminocyclopropane‑1‑carboxylate deaminase
RA	2,281,632	G→C	7.7%	G152R (GGC→CGC) ‡	PP_2009 →	1‑aminocyclopropane‑1‑carboxylate deaminase
RA	2,281,633	G→C	7.5%	G152A (GGC→GCC) ‡	PP_2009 →	1‑aminocyclopropane‑1‑carboxylate deaminase
RA	2,282,730	T→C	6.2%	intergenic (‑122/+107)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,737	T→G	5.8%	intergenic (‑129/+100)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
JC	2,282,749	Δ66 bp	5.1%	intergenic (‑141/+23)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,291,991	T→C	6.9%	V129A (GTG→GCG) ‡	PP_2019 →	RND family multidrug transporter
RA	2,291,992	G→A	7.0%	V129V (GTG→GTA) ‡	PP_2019 →	RND family multidrug transporter
RA	2,311,048	G→A	7.1%	V267I (GTA→ATA) ‡	PP_2033 →	hypothetical protein
RA	2,311,049	T→C	7.1%	V267A (GTA→GCA) ‡	PP_2033 →	hypothetical protein
RA	2,318,661	A→G	5.2%	A301A (GCA→GCG)	PP_2039 →	acyl‑CoA dehydrogenase
RA	2,330,246	A→G	5.9%	Q200R (CAG→CGG)	PP_2048 →	acyl‑CoA dehydrogenase
RA	2,334,843	C→T	10.0%	Q538Q (CAG→CAA) ‡	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,334,844	T→G	9.5%	Q538P (CAG→CCG) ‡	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,334,847	C→T	9.8%	G537D (GGC→GAC)	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,334,850	A→G	9.5%	V536A (GTC→GCC)	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,334,853	C→A	9.5%	W535L (TGG→TTG) ‡	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,334,854	A→G	9.4%	W535R (TGG→CGG) ‡	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,336,497	C→T	10.7%	intergenic (‑41/+39)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,498	A→T	10.9%	intergenic (‑42/+38)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,499	A→G	10.9%	intergenic (‑43/+37)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,338,201	C→T	6.5%	intergenic (‑140/‑7)	ybhD ← / → PP_2055	DNA‑binding transcriptional regulator/isomerase
RA	2,347,622	G→C	9.8%	S308T (AGC→ACC)	PP_2064 →	multidrug RND transporter membrane fusion protein
RA	2,351,597	C→G	5.1%	V33V (GTG→GTC)	PP_2066 ←	GntR family transcriptional regulator
RA	2,352,147	C→T	8.7%	G373D (GGC→GAC)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,367,826	A→G	8.7%	Q215R (CAA→CGA)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,378,650	G→C	7.1%	V69L (GTT→CTT)	PP_2086 →	CrfX family protein
RA	2,385,793	Δ1 bp	9.8%	coding (85/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,385,797:1	+A	9.3%	coding (81/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,387,191	C→G	13.7%	intergenic (‑88/‑50)	PP_2094 ← / → pyrD	nitrate‑binding protein NasS/dihydroorotate dehydrogenase
RA	2,387,193	C→G	13.6%	intergenic (‑90/‑48)	PP_2094 ← / → pyrD	nitrate‑binding protein NasS/dihydroorotate dehydrogenase
RA	2,387,195	C→G	13.4%	intergenic (‑92/‑46)	PP_2094 ← / → pyrD	nitrate‑binding protein NasS/dihydroorotate dehydrogenase
RA	2,388,336	C→G	11.2%	intergenic (+73/+71)	pyrD → / ← rmf	dihydroorotate dehydrogenase/ribosome modulation factor
RA	2,402,301:1	+A	10.4%	coding (66/330 nt)	PP_2103 ←	hypothetical protein
RA	2,406,964	A→T	10.3%	intergenic (+219/+35)	PP_2110 → / ← PP_2111	ribosomal large subunit pseudouridine synthase/aerotaxis receptor
RA	2,406,965	G→C	10.3%	intergenic (+220/+34)	PP_2110 → / ← PP_2111	ribosomal large subunit pseudouridine synthase/aerotaxis receptor
RA	2,406,966	A→T	10.4%	intergenic (+221/+33)	PP_2110 → / ← PP_2111	ribosomal large subunit pseudouridine synthase/aerotaxis receptor
RA	2,408,660	C→G	8.6%	intergenic (‑96/+46)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,408,661	C→G	8.3%	intergenic (‑97/+45)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,408,662	C→G	7.9%	intergenic (‑98/+44)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,408,663	C→G	7.9%	intergenic (‑99/+43)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,412,905	G→C	6.7%	intergenic (+169/‑252)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,412,915	Δ1 bp	6.5%	intergenic (+179/‑242)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,427,982	G→A	8.1%	intergenic (‑255/‑94)	PP_5503 ← / → PP_2128	CheA signal transduction histidine kinase/CheV‑like chemotaxis protein
RA	2,442,668	G→T	9.0%	P602P (CCG→CCT)	topA →	DNA topoisomerase I
RA	2,442,673	A→C	8.2%	K604T (AAG→ACG)	topA →	DNA topoisomerase I
RA	2,446,220	G→A	5.5%	G165D (GGT→GAT)	PP_2144 →	TetR family transcriptional regulator
RA	2,446,230	C→A	5.5%	A168A (GCC→GCA)	PP_2144 →	TetR family transcriptional regulator
RA	2,446,231	T→C	5.7%	F169L (TTC→CTC) ‡	PP_2144 →	TetR family transcriptional regulator
RA	2,446,232	T→C	5.7%	F169S (TTC→TCC) ‡	PP_2144 →	TetR family transcriptional regulator
RA	2,447,895	T→C	5.5%	Q1063R (CAG→CGG)	PP_2146 ←	SNF2/RAD54 family helicase
RA	2,458,097	G→C	5.8%	intergenic (+169/‑36)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,100	C→G	5.6%	intergenic (+172/‑33)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,103	G→C	5.8%	intergenic (+175/‑30)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,107	T→C	6.0%	intergenic (+179/‑26)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,469,842	T→C	12.9%	intergenic (+11/+24)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,844	G→A	13.0%	intergenic (+13/+22)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,851	A→T	10.7%	intergenic (+20/+15)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,852	A→T	10.6%	intergenic (+21/+14)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,853	A→T	10.7%	intergenic (+22/+13)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,860	T→C	8.7%	intergenic (+29/+6)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,862	G→A	8.6%	intergenic (+31/+4)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,484,077	C→T	7.4%	R315C (CGT→TGT)	puuA‑I →	glutamate‑putrescine ligase
RA	2,566,942	G→C	7.0%	L4V (CTG→GTG)	pctB ←	methyl‑accepting chemotaxis protein PctB
RA	2,566,947	Δ1 bp	9.9%	coding (5/1932 nt)	pctB ←	methyl‑accepting chemotaxis protein PctB
RA	2,566,953:1	+G	6.7%	intergenic (‑2/+96)	pctB ← / ← PP_2250	methyl‑accepting chemotaxis protein PctB/LysR family transcriptional regulator
RA	2,566,958	G→C	6.5%	intergenic (‑7/+91)	pctB ← / ← PP_2250	methyl‑accepting chemotaxis protein PctB/LysR family transcriptional regulator
RA	2,577,151	Δ1 bp	6.2%	coding (1244/1776 nt)	PP_2259 ←	sigma‑54 dependent transcriptional regulator
RA	2,579,758	T→C	7.8%	L25P (CTG→CCG)	PP_2261 →	sugar ABC transporter ATP‑binding protein
RA	2,602,278	C→T	10.0%	P14P (CCC→CCT)	PP_2281 →	capsid assembly protein
RA	2,602,279	G→C	9.8%	E15Q (GAG→CAG)	PP_2281 →	capsid assembly protein
RA	2,603,077	A→C	12.4%	K12Q (AAG→CAG) ‡	PP_5513 →	hypothetical protein
RA	2,603,079	G→C	10.9%	K12N (AAG→AAC) ‡	PP_5513 →	hypothetical protein
RA	2,603,081	G→T	13.1%	W13L (TGG→TTG)	PP_5513 →	hypothetical protein
RA	2,621,328	T→A	7.6%	L48H (CTT→CAT)	PP_2294 →	hypothetical protein
RA	2,621,330	G→C	7.6%	D49H (GAT→CAT) ‡	PP_2294 →	hypothetical protein
RA	2,621,332	T→A	7.6%	D49E (GAT→GAA) ‡	PP_2294 →	hypothetical protein
RA	2,628,188	A→T	6.9%	K425* (AAG→TAG) ‡	tig →	trigger factor
RA	2,628,189	A→T	6.9%	K425M (AAG→ATG) ‡	tig →	trigger factor
RA	2,633,457	T→G	7.6%	intergenic (+100/‑82)	hupB → / → PP_2304	DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D
RA	2,633,458	C→A	7.9%	intergenic (+101/‑81)	hupB → / → PP_2304	DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D
RA	2,635,440	C→A	8.1%	intergenic (+30/+87)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,635,441	T→C	7.9%	intergenic (+31/+86)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,635,442	C→G	8.7%	intergenic (+32/+85)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,635,443	G→A	7.8%	intergenic (+33/+84)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,635,444	T→G	7.5%	intergenic (+34/+83)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,641,799	A→C	5.3%	Q21P (CAG→CCG)	PP_2312 →	lytic transglycosylase family protein
RA	2,641,804	C→A	5.6%	R23S (CGC→AGC)	PP_2312 →	lytic transglycosylase family protein
RA	2,650,160	A→T	6.4%	intergenic (+99/+35)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,650,161	A→T	5.9%	intergenic (+100/+34)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,651,276	G→C	13.9%	intergenic (+41/+29)	PP_2323 → / ← aroF‑I	hypothetical protein/tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
RA	2,668,053	T→G	12.6%	intergenic (+71/‑96)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,668,054:1	+T	11.9%	intergenic (+72/‑95)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,668,062	G→C	12.8%	intergenic (+80/‑87)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,668,063	G→A	13.4%	intergenic (+81/‑86)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,668,066	T→C	13.9%	intergenic (+84/‑83)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,668,070	T→C	15.2%	intergenic (+88/‑79)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,668,071	G→C	14.4%	intergenic (+89/‑78)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,668,079	Δ1 bp	17.2%	intergenic (+97/‑70)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,668,081	C→A	26.8%	intergenic (+99/‑68)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,708,270	G→A	6.8%	H313H (CAC→CAT)	cysI ←	sulfite reductase hemoprotein subunit beta
RA	2,708,274	T→C	6.9%	E312G (GAG→GGG) ‡	cysI ←	sulfite reductase hemoprotein subunit beta
RA	2,708,275	C→G	6.6%	E312Q (GAG→CAG) ‡	cysI ←	sulfite reductase hemoprotein subunit beta
RA	2,708,276	G→A	6.5%	A311A (GCC→GCT)	cysI ←	sulfite reductase hemoprotein subunit beta
RA	2,708,280	T→C	6.5%	D310G (GAT→GGT)	cysI ←	sulfite reductase hemoprotein subunit beta
RA	2,710,986	T→G	6.8%	intergenic (+289/+25)	PP_2373 → / ← PP_2374	hypothetical protein/hypothetical protein
RA	2,710,987	C→A	8.7%	intergenic (+290/+24)	PP_2373 → / ← PP_2374	hypothetical protein/hypothetical protein
RA	2,724,005	G→A	6.9%	S196L (TCG→TTG)	azlC ←	branched‑chain amino acid transport protein AzlC
RA	2,734,030	A→G	7.0%	N310D (AAC→GAC)	PP_2394 →	leucine‑rich repeat‑containing protein
RA	2,756,836	A→C	5.7%	intergenic (+15/+18)	czcA‑II → / ← PP_2411	cation efflux system protein/MFS transporter
RA	2,756,837	A→T	5.7%	intergenic (+16/+17)	czcA‑II → / ← PP_2411	cation efflux system protein/MFS transporter
RA	2,756,838	G→T	5.8%	intergenic (+17/+16)	czcA‑II → / ← PP_2411	cation efflux system protein/MFS transporter
RA	2,758,465	G→A	5.8%	H233H (CAC→CAT)	PP_2412 ←	ParA family protein
RA	2,768,939:1	+C	5.8%	noncoding (35/209 nt)	PP_mr34 ←	Cobalamin regulatory region
RA	2,768,943	G→C	5.9%	noncoding (31/209 nt)	PP_mr34 ←	Cobalamin regulatory region
RA	2,768,946	Δ1 bp	5.8%	noncoding (28/209 nt)	PP_mr34 ←	Cobalamin regulatory region
RA	2,793,738	A→T	6.0%	intergenic (+47/+80)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,799,171	A→G	6.4%	intergenic (‑185/+31)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,180	A→G	6.4%	intergenic (‑194/+22)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,186	C→T	6.6%	intergenic (‑200/+16)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,812,775	C→T	7.1%	intergenic (+69/‑41)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,778	C→G	7.0%	intergenic (+72/‑38)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,781	A→G	7.2%	intergenic (+75/‑35)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,816,594	T→A	7.4%	I21N (ATT→AAT)	PP_2472 →	MerR family transcriptional regulator
RA	2,839,682	G→C	9.2%	S71R (AGC→AGG)	PP_5529 ←	epimerase
RA	2,865,329	G→C	9.9%	S18R (AGC→AGG) ‡	gllP ←	porin‑like protein
RA	2,865,331	T→A	10.0%	S18C (AGC→TGC) ‡	gllP ←	porin‑like protein
RA	2,865,333	G→C	10.0%	A17G (GCC→GGC)	gllP ←	porin‑like protein
RA	2,869,100	C→A	11.1%	intergenic (+639/‑292)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,873,639	T→C	9.3%	L140P (CTG→CCG)	cigR →	membrane protein
RA	2,873,647	G→A	9.0%	V143M (GTG→ATG) ‡	cigR →	membrane protein
RA	2,873,648	T→C	9.0%	V143A (GTG→GCG) ‡	cigR →	membrane protein
RA	2,873,656	G→A	6.8%	G146R (GGG→AGG)	cigR →	membrane protein
RA	2,903,780	G→C	17.2%	A383G (GCG→GGG)	PP_2556 ←	chromate transporter
RA	2,903,783	G→C	17.3%	T382S (ACT→AGT)	PP_2556 ←	chromate transporter
RA	2,903,787	T→C	16.6%	I381V (ATC→GTC)	PP_2556 ←	chromate transporter
RA	2,903,789	C→G	15.1%	G380A (GGG→GCG) ‡	PP_2556 ←	chromate transporter
RA	2,903,790	C→G	15.0%	G380R (GGG→CGG) ‡	PP_2556 ←	chromate transporter
RA	2,903,792	G→A	14.8%	T379I (ACC→ATC)	PP_2556 ←	chromate transporter
RA	2,903,796	G→C	15.1%	L378V (CTG→GTG)	PP_2556 ←	chromate transporter
RA	2,903,799	G→C	15.8%	P377A (CCA→GCA)	PP_2556 ←	chromate transporter
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,941,701	A→C	5.3%	intergenic (+21/+25)	PP_2574 → / ← PP_2575	LysR family transcriptional regulator/hypothetical protein
RA	2,951,341	A→C	5.8%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	5.8%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	5.9%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
JC	2,957,081	Δ84 bp	22.6%	intergenic (+36/‑77)	PP_2588 → / → PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
JC	2,958,780	Δ61 bp	8.4%	intergenic (+46/+36)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,964,948	C→G	7.3%	G560A (GGG→GCG)	PP_2595 ←	ABC transporter permease/ATP‑binding protein
RA	2,964,954	T→A	7.7%	N558I (AAT→ATT)	PP_2595 ←	ABC transporter permease/ATP‑binding protein
RA	2,964,960	C→G	7.8%	R556P (CGC→CCC)	PP_2595 ←	ABC transporter permease/ATP‑binding protein
RA	2,973,479	A→G	8.3%	L132P (CTT→CCT)	PP_2600 ←	hypothetical protein
RA	2,973,481	G→C	7.8%	A131A (GCC→GCG)	PP_2600 ←	hypothetical protein
RA	2,973,487	G→C	8.7%	G129G (GGC→GGG) ‡	PP_2600 ←	hypothetical protein
RA	2,973,489	C→T	8.3%	G129S (GGC→AGC) ‡	PP_2600 ←	hypothetical protein
RA	3,004,815	C→T	6.8%	R466C (CGC→TGC) ‡	PP_2627 →	membrane protein
RA	3,004,817	C→G	6.9%	R466R (CGC→CGG) ‡	PP_2627 →	membrane protein
RA	3,004,819	A→G	6.7%	H467R (CAC→CGC)	PP_2627 →	membrane protein
RA	3,006,468	T→G	7.3%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,006,473	G→T	7.1%	L1018L (CTG→CTT)	PP_2627 →	membrane protein
RA	3,006,474	A→C	7.3%	K1019Q (AAG→CAG)	PP_2627 →	membrane protein
RA	3,006,479	C→A	7.3%	D1020E (GAC→GAA)	PP_2627 →	membrane protein
RA	3,012,890	C→G	8.5%	N42K (AAC→AAG)	PP_2634 →	cellulose synthase
RA	3,012,896	C→G	8.3%	L44L (CTC→CTG)	PP_2634 →	cellulose synthase
RA	3,033,537	C→G	9.5%	A26A (GCC→GCG)	PP_2646 →	hypothetical protein
RA	3,033,545	A→T	9.7%	D29V (GAC→GTC)	PP_2646 →	hypothetical protein
RA	3,033,553	C→G	10.5%	R32G (CGC→GGC)	PP_2646 →	hypothetical protein
RA	3,033,556:1	+T	10.9%	coding (97/396 nt)	PP_2646 →	hypothetical protein
RA	3,033,557	A→G	10.9%	Q33R (CAG→CGG)	PP_2646 →	hypothetical protein
RA	3,033,563	C→A	6.9%	P35Q (CCG→CAG)	PP_2646 →	hypothetical protein
RA	3,042,172	C→T	10.5%	A25A (GCC→GCT)	PP_5537 →	membrane protein
RA	3,042,173	G→C	9.3%	E26Q (GAG→CAG) ‡	PP_5537 →	membrane protein
RA	3,042,174	A→G	9.3%	E26G (GAG→GGG) ‡	PP_5537 →	membrane protein
RA	3,043,569	C→A	7.9%	D76E (GAC→GAA)	pstS →	phosphate ABC transporter substrate‑binding protein
RA	3,043,570	T→G	8.3%	F77V (TTC→GTC)	pstS →	phosphate ABC transporter substrate‑binding protein
RA	3,046,234	G→A	7.2%	A271T (GCC→ACC)	pstA →	phosphate ABC transporter permease
RA	3,048,582	T→C	8.4%	intergenic (+37/‑259)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,048,585	T→C	8.6%	intergenic (+40/‑256)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,048,590	A→G	8.7%	intergenic (+45/‑251)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,048,604	G→T	14.6%	intergenic (+59/‑237)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,048,605	A→C	15.2%	intergenic (+60/‑236)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,050,727	A→C	7.9%	N187H (AAC→CAC)	PP_2663 →	hypothetical protein
RA	3,050,935	T→G	6.7%	F256C (TTC→TGC)	PP_2663 →	hypothetical protein
RA	3,056,958:1	+A	7.5%	coding (390/990 nt)	PP_2669 ←	outer membrane protein
RA	3,056,963	Δ1 bp	7.1%	coding (385/990 nt)	PP_2669 ←	outer membrane protein
RA	3,059,387	G→A	6.4%	L222L (CTG→CTA)	PP_2671 →	sensor histidine kinase
RA	3,065,694	C→G	7.4%	R212G (CGC→GGC) ‡	PP_2677 →	hypothetical protein
RA	3,065,695	G→C	7.3%	R212P (CGC→CCC) ‡	PP_2677 →	hypothetical protein
RA	3,065,696	C→G	7.1%	R212R (CGC→CGG) ‡	PP_2677 →	hypothetical protein
RA	3,065,791	A→G	5.7%	D244G (GAC→GGC)	PP_2677 →	hypothetical protein
RA	3,066,882	G→A	7.2%	intergenic (+92/‑80)	PP_2678 → / → qedH‑II	hydrolase/quinoprotein ethanol dehydrogenase
RA	3,068,339	A→T	7.2%	T460S (ACC→TCC)	qedH‑II →	quinoprotein ethanol dehydrogenase
RA	3,071,211	T→A	7.8%	C22S (TGC→AGC)	yiaY →	Fe‑containing alcohol dehydrogenase
RA	3,072,625	G→A	10.1%	A111T (GCC→ACC) ‡	PP_2683 →	two‑component system sensor histidine kinase/response regulator
RA	3,072,627	C→G	10.0%	A111A (GCC→GCG) ‡	PP_2683 →	two‑component system sensor histidine kinase/response regulator
RA	3,072,628	C→G	11.3%	R112G (CGT→GGT) ‡	PP_2683 →	two‑component system sensor histidine kinase/response regulator
RA	3,072,630	T→C	10.1%	R112R (CGT→CGC) ‡	PP_2683 →	two‑component system sensor histidine kinase/response regulator
RA	3,087,768	G→C	7.5%	R259R (CGC→CGG)	metR‑II ←	homocysteine‑binding DNA‑binding transcriptional regulator
RA	3,103,877	G→T	9.9%	L135F (TTG→TTT)	PP_2714 →	sensor histidine kinase
RA	3,104,167	A→T	7.0%	D232V (GAC→GTC)	PP_2714 →	sensor histidine kinase
RA	3,104,299	T→A	9.8%	L276Q (CTG→CAG)	PP_2714 →	sensor histidine kinase
RA	3,111,153	C→G	5.9%	A116P (GCG→CCG)	pfpI ←	protease PfpI
RA	3,111,154	G→C	5.9%	G115G (GGC→GGG) ‡	pfpI ←	protease PfpI
RA	3,111,155	C→G	5.9%	G115A (GGC→GCC) ‡	pfpI ←	protease PfpI
RA	3,126,780	G→A	8.0%	G215G (GGC→GGT)	PP_2744 ←	ribose‑phosphate pyrophosphokinase family protein
RA	3,126,840:1	+G	6.6%	coding (585/960 nt)	PP_2744 ←	ribose‑phosphate pyrophosphokinase family protein
RA	3,126,846	G→T	9.7%	H193Q (CAC→CAA) ‡	PP_2744 ←	ribose‑phosphate pyrophosphokinase family protein
RA	3,126,848	G→T	10.0%	H193N (CAC→AAC) ‡	PP_2744 ←	ribose‑phosphate pyrophosphokinase family protein
RA	3,126,856	G→C	11.3%	A190G (GCC→GGC)	PP_2744 ←	ribose‑phosphate pyrophosphokinase family protein
RA	3,126,864	A→C	7.4%	F187L (TTT→TTG) ‡	PP_2744 ←	ribose‑phosphate pyrophosphokinase family protein
RA	3,126,866	A→C	7.4%	F187V (TTT→GTT) ‡	PP_2744 ←	ribose‑phosphate pyrophosphokinase family protein
RA	3,136,991	G→A	10.3%	V65I (GTT→ATT) ‡	PP_2753 →	ABC transporter ATP‑binding protein
RA	3,136,992	T→A	9.9%	V65D (GTT→GAT) ‡	PP_2753 →	ABC transporter ATP‑binding protein
RA	3,136,993	T→C	10.4%	V65V (GTT→GTC) ‡	PP_2753 →	ABC transporter ATP‑binding protein
RA	3,143,433:1	+A	8.1%	coding (357/1539 nt)	rbsA‑II →	ribose ABC transporter ‑ ATP‑binding subunit
RA	3,143,438	A→C	7.3%	E121A (GAG→GCG)	rbsA‑II →	ribose ABC transporter ‑ ATP‑binding subunit
RA	3,143,443	G→T	7.6%	A123S (GCG→TCG)	rbsA‑II →	ribose ABC transporter ‑ ATP‑binding subunit
RA	3,149,240	G→T	5.7%	L149L (CTG→CTT)	PP_2765 →	sulfonate monooxygenase MsuD
RA	3,149,241	A→C	5.1%	K150Q (AAG→CAG)	PP_2765 →	sulfonate monooxygenase MsuD
RA	3,155,385	C→T	6.9%	R293H (CGC→CAC)	PP_2771 ←	sigma‑54 dependent transcriptional regulator
RA	3,155,398	G→T	5.9%	R289R (CGA→AGA)	PP_2771 ←	sigma‑54 dependent transcriptional regulator
RA	3,155,403	A→G	5.9%	L287S (TTG→TCG)	PP_2771 ←	sigma‑54 dependent transcriptional regulator
RA	3,171,961	G→C	6.9%	R78P (CGG→CCG)	PP_2784 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	3,173,466	T→G	8.5%	L324R (CTG→CGG)	PP_2785 →	hypothetical protein
RA	3,176,738	C→T	8.2%	T680M (ACG→ATG)	PP_2787 →	transporter
RA	3,181,393	T→G	6.4%	V197G (GTT→GGT)	PP_2791 →	aminoglycoside phosphotransferase
RA	3,181,395	C→A	6.2%	P198T (CCG→ACG)	PP_2791 →	aminoglycoside phosphotransferase
RA	3,230,529	G→A	7.0%	T285M (ACG→ATG)	PP_2830 ←	MFS transporter
RA	3,238,145	T→G	9.9%	L195R (CTG→CGG)	PP_2836 →	2‑keto‑3‑deoxyxylonate dehydratase
RA	3,252,492	G→A	9.1%	intergenic (+22/+221)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,252,497	T→C	8.8%	intergenic (+27/+216)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,255,843	C→T	7.4%	intergenic (‑106/+30)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,255,846	T→G	6.2%	intergenic (‑109/+27)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,255,849	C→A	6.3%	intergenic (‑112/+24)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,255,852	A→G	6.4%	intergenic (‑115/+21)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,258,716	C→T	8.9%	intergenic (‑38/+24)	PP_2855 ← / ← PP_2856	hypothetical protein/hypothetical protein
RA	3,258,717	G→T	8.5%	intergenic (‑39/+23)	PP_2855 ← / ← PP_2856	hypothetical protein/hypothetical protein
RA	3,258,718	A→C	8.4%	intergenic (‑40/+22)	PP_2855 ← / ← PP_2856	hypothetical protein/hypothetical protein
RA	3,258,719	A→G	8.7%	intergenic (‑41/+21)	PP_2855 ← / ← PP_2856	hypothetical protein/hypothetical protein
RA	3,264,007	A→G	6.3%	D180D (GAT→GAC) ‡	PP_2861 ←	methyl‑accepting chemotaxis transducer
RA	3,264,008	T→A	7.5%	D180V (GAT→GTT) ‡	PP_2861 ←	methyl‑accepting chemotaxis transducer
RA	3,266,124	A→G	8.1%	intergenic (+41/+18)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,287,276	T→C	17.4%	intergenic (+17/+24)	PP_2889 → / ← xthA	transmembrane regulator PrtR/exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,287,277	G→A	16.7%	intergenic (+18/+23)	PP_2889 → / ← xthA	transmembrane regulator PrtR/exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,288,073	G→C	10.1%	R14G (CGC→GGC)	xthA ←	exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,288,074	G→C	9.1%	A13A (GCC→GCG)	xthA ←	exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,298,028	G→C	7.6%	G82A (GGT→GCT)	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,298,030	G→C	8.0%	E83Q (GAG→CAG) ‡	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,298,032	G→C	7.9%	E83D (GAG→GAC) ‡	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,299,010	G→A	7.4%	T409T (ACG→ACA)	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,300,170	Δ1 bp	7.7%	intergenic (+68/+14)	pvdQ → / ← lpxH	acyl‑homoserine lactone acylase PvdQ/UDP‑2,3‑diacylglucosamine hydrolase
RA	3,300,854	G→A	6.3%	S18F (TCC→TTC) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,300,855	A→T	6.1%	S18T (TCC→ACC) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,300,859	A→T	7.9%	D16E (GAT→GAA) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,300,860	T→C	6.1%	D16G (GAT→GGT) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,304,763	A→G	10.8%	intergenic (+16/+16)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,304,764	C→G	10.9%	intergenic (+17/+15)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,304,765	C→T	10.9%	intergenic (+18/+14)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,313,825	C→A	9.9%	intergenic (+30/‑129)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,313,828	T→G	9.1%	intergenic (+33/‑126)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,314,126	C→T	9.5%	P58L (CCC→CTC)	proP →	osmosensory proline/betaine/H+ permease
RA	3,317,518	C→T	7.8%	V507I (GTC→ATC)	treSA ←	trehalose synthase A
RA	3,344,839	T→C	8.6%	D97G (GAC→GGC)	PP_2941 ←	hypothetical protein
RA	3,344,844	C→G	8.7%	R95R (CGG→CGC) ‡	PP_2941 ←	hypothetical protein
RA	3,344,845	C→G	8.8%	R95P (CGG→CCG) ‡	PP_2941 ←	hypothetical protein
RA	3,344,850	G→A	8.8%	G93G (GGC→GGT)	PP_2941 ←	hypothetical protein
RA	3,352,168	A→G	6.2%	intergenic (+58/+84)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,352,174	A→G	6.6%	intergenic (+64/+78)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,352,175	G→C	6.4%	intergenic (+65/+77)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,352,176	C→T	6.5%	intergenic (+66/+76)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,356,500	T→A	6.2%	R116R (CGA→CGT)	PP_2952 ←	LysR family transcriptional regulator
RA	3,356,506	A→T	6.4%	F114L (TTT→TTA) ‡	PP_2952 ←	LysR family transcriptional regulator
RA	3,356,507	A→T	6.4%	F114Y (TTT→TAT) ‡	PP_2952 ←	LysR family transcriptional regulator
RA	3,356,508	A→T	6.4%	F114I (TTT→ATT) ‡	PP_2952 ←	LysR family transcriptional regulator
RA	3,356,514	T→A	6.7%	T112S (ACG→TCG)	PP_2952 ←	LysR family transcriptional regulator
RA	3,391,520	T→C	10.7%	W244R (TGG→CGG) ‡	PP_2994 →	FMN‑binding oxidoreductase
RA	3,391,521	G→C	10.8%	W244S (TGG→TCG) ‡	PP_2994 →	FMN‑binding oxidoreductase
RA	3,391,522	G→A	10.7%	W244* (TGG→TGA) ‡	PP_2994 →	FMN‑binding oxidoreductase
RA	3,402,505	C→T	14.0%	intergenic (+29/‑123)	PP_3010 → / → PP_3011	hypothetical protein/hypothetical protein
RA	3,402,506	G→C	13.7%	intergenic (+30/‑122)	PP_3010 → / → PP_3011	hypothetical protein/hypothetical protein
RA	3,402,511	G→C	13.5%	intergenic (+35/‑117)	PP_3010 → / → PP_3011	hypothetical protein/hypothetical protein
RA	3,402,512	A→G	13.4%	intergenic (+36/‑116)	PP_3010 → / → PP_3011	hypothetical protein/hypothetical protein
RA	3,407,875	G→A	8.1%	G207E (GGG→GAG)	PP_3020 →	serine/threonine protein phosphatase
RA	3,411,656	A→T	7.8%	K57M (AAG→ATG) ‡	PP_5551 →	hypothetical protein
RA	3,411,657	G→T	8.0%	K57N (AAG→AAT) ‡	PP_5551 →	hypothetical protein
RA	3,411,659	T→A	8.1%	V58D (GTC→GAC)	PP_5551 →	hypothetical protein
RA	3,411,662	A→T	10.0%	N59I (AAT→ATT)	PP_5551 →	hypothetical protein
RA	3,420,183	A→C	9.1%	M1R (ATG→AGG) †‡	PP_3033 ←	CI/C2 family transcriptional regulator
RA	3,420,184	T→A	8.9%	M1M (ATG→TTG) †‡	PP_3033 ←	CI/C2 family transcriptional regulator
RA	3,420,185	G→T	8.7%	intergenic (‑1/‑78)	PP_3033 ← / → PP_3034	CI/C2 family transcriptional regulator/hypothetical protein
RA	3,420,239	T→C	5.9%	intergenic (‑55/‑24)	PP_3033 ← / → PP_3034	CI/C2 family transcriptional regulator/hypothetical protein
RA	3,420,243	G→A	5.9%	intergenic (‑59/‑20)	PP_3033 ← / → PP_3034	CI/C2 family transcriptional regulator/hypothetical protein
RA	3,430,349	G→C	5.2%	S189S (TCG→TCC)	PP_3045 →	ATP‑dependent protease ClpP
RA	3,436,195	T→A	7.5%	W44R (TGG→AGG)	gpI →	tail formation protein
RA	3,436,199	T→C	7.5%	L45P (CTG→CCG) ‡	gpI →	tail formation protein
RA	3,436,200	G→A	10.0%	L45L (CTG→CTA) ‡	gpI →	tail formation protein
RA	3,436,204	T→A	7.5%	W47R (TGG→AGG)	gpI →	tail formation protein
RA	3,443,461	G→A	20.7%	V740V (GTG→GTA)	PP_3062 →	tail length determination protein
RA	3,459,940	T→A	9.4%	D141V (GAC→GTC)	PP_3075 ←	transcriptional regulator
RA	3,459,946	A→T	9.8%	L139Q (CTG→CAG)	PP_3075 ←	transcriptional regulator
RA	3,463,544	G→C	5.6%	L272V (CTG→GTG)	PP_3078 ←	ABC transporter substrate‑binding protein
RA	3,463,547	C→G	5.6%	D271H (GAC→CAC)	PP_3078 ←	ABC transporter substrate‑binding protein
RA	3,463,550	G→C	6.1%	R270G (CGT→GGT)	PP_3078 ←	ABC transporter substrate‑binding protein
RA	3,475,489	G→C	18.4%	H408Q (CAC→CAG) ‡	PP_3087 ←	excinuclease ABC subunit A
RA	3,475,491	G→T	19.5%	H408N (CAC→AAC) ‡	PP_3087 ←	excinuclease ABC subunit A
RA	3,475,492	C→G	19.4%	L407F (TTG→TTC) ‡	PP_3087 ←	excinuclease ABC subunit A
RA	3,475,493	A→C	19.1%	L407W (TTG→TGG) ‡	PP_3087 ←	excinuclease ABC subunit A
RA	3,475,495	G→C	19.5%	G406G (GGC→GGG)	PP_3087 ←	excinuclease ABC subunit A
RA	3,478,003	A→G	6.8%	intergenic (‑38/+58)	PP_3088 ← / ← PP_3089	hypothetical protein/hypothetical protein
RA	3,478,004	A→T	6.3%	intergenic (‑39/+57)	PP_3088 ← / ← PP_3089	hypothetical protein/hypothetical protein
RA	3,478,005	A→T	6.7%	intergenic (‑40/+56)	PP_3088 ← / ← PP_3089	hypothetical protein/hypothetical protein
RA	3,478,006	A→T	6.7%	intergenic (‑41/+55)	PP_3088 ← / ← PP_3089	hypothetical protein/hypothetical protein
RA	3,478,007	C→T	6.4%	intergenic (‑42/+54)	PP_3088 ← / ← PP_3089	hypothetical protein/hypothetical protein
RA	3,478,890	G→A	8.1%	R777C (CGC→TGC)	PP_3090 ←	OmpA domain‑containing protein
RA	3,490,867	G→C	7.0%	P175R (CCG→CGG) ‡	clpV ←	protein ClpV1
RA	3,490,868	G→C	7.0%	P175A (CCG→GCG) ‡	clpV ←	protein ClpV1
RA	3,512,324	A→T	6.7%	Y331F (TAC→TTC)	PP_3108 →	rhs family protein
RA	3,525,858	T→C	8.3%	L102L (TTG→CTG) ‡	lexA‑II →	transcriptional repressor
RA	3,525,859	T→A	8.5%	L102* (TTG→TAG) ‡	lexA‑II →	transcriptional repressor
RA	3,525,860	G→A	8.2%	L102L (TTG→TTA) ‡	lexA‑II →	transcriptional repressor
RA	3,532,326	T→G	6.8%	E286A (GAA→GCA)	PP_3121 ←	transcriptional regulator, LysR family
RA	3,532,328	A→T	6.1%	L285L (CTT→CTA) ‡	PP_3121 ←	transcriptional regulator, LysR family
RA	3,532,329	A→T	6.1%	L285H (CTT→CAT) ‡	PP_3121 ←	transcriptional regulator, LysR family
RA	3,532,331	C→A	6.9%	L284L (CTG→CTT)	PP_3121 ←	transcriptional regulator, LysR family
RA	3,534,555	T→C	7.0%	C167R (TGC→CGC)	atoB →	3‑oxoacid CoA‑transferase subunit B
RA	3,534,762	T→G	11.7%	intergenic (+49/‑106)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,767	A→C	10.3%	intergenic (+54/‑101)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,768	C→A	11.2%	intergenic (+55/‑100)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,771	T→G	10.1%	intergenic (+58/‑97)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,772	G→T	10.0%	intergenic (+59/‑96)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,777	C→A	10.5%	intergenic (+64/‑91)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,793	G→A	7.4%	intergenic (+80/‑75)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,545,022	C→T	5.4%	G138D (GGC→GAC)	PP_3130 ←	hypothetical protein
RA	3,552,399:1	+G	5.1%	coding (56/978 nt)	PP_3137 →	group 2 family glycosyl transferase
RA	3,553,796	A→G	7.5%	S155G (AGC→GGC)	PP_3138 →	VirK domain‑containing protein
RA	3,553,797:1	+C	7.4%	coding (464/1002 nt)	PP_3138 →	VirK domain‑containing protein
RA	3,559,926	C→G	5.9%	R58R (CGG→CGC)	PP_3143 ←	LysR family transcriptional regulator
RA	3,573,164	T→G	6.6%	F168C (TTC→TGC)	pagL‑II →	lipid A 3‑O‑deacylase
RA	3,573,167	A→G	7.8%	Y169C (TAC→TGC) ‡	pagL‑II →	lipid A 3‑O‑deacylase
RA	3,573,168	C→T	7.8%	Y169Y (TAC→TAT) ‡	pagL‑II →	lipid A 3‑O‑deacylase
RA	3,573,171	C→A	7.8%	S170R (AGC→AGA)	pagL‑II →	lipid A 3‑O‑deacylase
RA	3,580,630	C→G	6.2%	I255M (ATC→ATG)	benR →	BenABC operon transcriptional activator
RA	3,581,991	A→C	5.7%	Y21S (TAC→TCC)	benA →	benzoate 1,2‑dioxygenase subunit alpha
RA	3,591,576	T→A	9.2%	L258M (TTG→ATG) ‡	PP_3169 →	membrane protein
RA	3,591,577	T→A	9.2%	L258* (TTG→TAG) ‡	PP_3169 →	membrane protein
RA	3,593,758	G→A	9.7%	R265H (CGC→CAC)	PP_3171 →	hypothetical protein
RA	3,593,761	C→G	8.7%	A266G (GCC→GGC)	PP_3171 →	hypothetical protein
RA	3,593,764	T→C	8.4%	V267A (GTG→GCG)	PP_3171 →	hypothetical protein
RA	3,597,312	A→T	8.7%	I267N (ATT→AAT)	PP_3174 ←	oxidoreductase
RA	3,600,609	A→T	5.4%	L195Q (CTG→CAG)	PP_3176 ←	MFS transporter
RA	3,610,735	A→T	5.7%	G983G (GGT→GGA)	mcoA ←	Mn(II) copper oxidase A
RA	3,618,848	C→G	7.5%	G233G (GGC→GGG)	codA →	cytosine deaminase/isoguanine deaminase
RA	3,625,537	T→A	9.7%	intergenic (‑50/+27)	PP_3195 ← / ← PP_3196	hypothetical protein/nodulation protein d1
RA	3,625,544	Δ1 bp	9.1%	intergenic (‑57/+20)	PP_3195 ← / ← PP_3196	hypothetical protein/nodulation protein d1
RA	3,627,068	A→C	9.3%	D97A (GAC→GCC)	PP_3197 →	glyoxalase family protein
RA	3,627,077	G→T	8.9%	G100V (GGC→GTC)	PP_3197 →	glyoxalase family protein
RA	3,642,334	C→T	7.3%	G291S (GGC→AGC)	PP_3209 ←	isoxanthopterin deaminase
RA	3,648,237	G→T	7.0%	W174L (TGG→TTG)	PP_3214 →	hypothetical protein
RA	3,669,936	A→G	7.9%	D77G (GAT→GGT)	fnrB →	Crp/Fnr family transcriptional regulator
RA	3,686,147	C→G	5.3%	C185W (TGC→TGG)	PP_3251 →	hypothetical protein
RA	3,697,444	G→A	8.6%	S15S (AGC→AGT) ‡	PP_5595 ←	hypothetical protein
RA	3,697,445	C→G	8.1%	S15T (AGC→ACC) ‡	PP_5595 ←	hypothetical protein
RA	3,697,446	T→C	8.4%	S15G (AGC→GGC) ‡	PP_5595 ←	hypothetical protein
RA	3,706,254	T→C	5.9%	T347A (ACC→GCC)	phaK ←	phenylacetic acid‑specific porin
RA	3,718,088	C→G	12.4%	E169Q (GAG→CAG)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,092	C→A	12.1%	L167L (CTG→CTT) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,093	A→T	12.5%	L167Q (CTG→CAG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,096	A→T	12.4%	M166K (ATG→AAG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,097	T→G	12.2%	M166L (ATG→CTG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,101	C→G	13.7%	L164L (CTG→CTC)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,748,871	G→T	6.4%	intergenic (‑111/+84)	kefB‑II ← / ← PP_3312	glutathione‑regulated potassium/H+ antiporter/heat shock protein
RA	3,748,874	A→C	7.2%	intergenic (‑114/+81)	kefB‑II ← / ← PP_3312	glutathione‑regulated potassium/H+ antiporter/heat shock protein
RA	3,762,926	T→C	7.6%	F57L (TTC→CTC)	PP_3326 →	hypothetical protein
RA	3,762,930:1	+C	7.5%	coding (173/723 nt)	PP_3326 →	hypothetical protein
RA	3,762,942	A→T	11.1%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,762,947	A→T	11.1%	I64F (ATC→TTC)	PP_3326 →	hypothetical protein
RA	3,773,922	A→T	7.9%	T209S (ACA→TCA)	PP_5743 →	TonB‑dependent receptor protein
RA	3,775,321	C→A	6.1%	M52I (ATG→ATT) ‡	PP_3336 ←	hypothetical protein
RA	3,775,322	A→T	9.2%	M52K (ATG→AAG) ‡	PP_3336 ←	hypothetical protein
RA	3,775,325	G→C	5.8%	P51R (CCC→CGC)	PP_3336 ←	hypothetical protein
RA	3,775,330	T→G	5.3%	A49A (GCA→GCC)	PP_3336 ←	hypothetical protein
RA	3,788,398	G→C	7.9%	Y79* (TAC→TAG)	PP_3350 ←	hypothetical protein
RA	3,788,401	G→C	7.2%	R78R (CGC→CGG)	PP_3350 ←	hypothetical protein
RA	3,796,426	T→C	6.3%	T10A (ACC→GCC)	fcs ←	feruloyl‑CoA‑synthetase
RA	3,798,699:1	+A	6.0%	coding (201/831 nt)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,704	A→T	6.0%	W66R (TGG→AGG)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,709	Δ1 bp	6.6%	coding (191/831 nt)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,799,740:1	+A	6.3%	coding (75/1125 nt)	PP_3360 →	membrane protein
RA	3,799,744	A→T	6.6%	T27S (ACA→TCA)	PP_3360 →	membrane protein
RA	3,799,748	Δ1 bp	6.5%	coding (83/1125 nt)	PP_3360 →	membrane protein
RA	3,800,839	A→G	8.9%	intergenic (+49/+30)	PP_3360 → / ← PP_3361	membrane protein/aminotransferase
RA	3,800,844	C→T	7.0%	intergenic (+54/+25)	PP_3360 → / ← PP_3361	membrane protein/aminotransferase
RA	3,804,019	T→C	9.1%	intergenic (‑103/‑41)	PP_3361 ← / → PP_3362	aminotransferase/AsnC family transcriptional regulator
RA	3,804,020	C→G	9.2%	intergenic (‑104/‑40)	PP_3361 ← / → PP_3362	aminotransferase/AsnC family transcriptional regulator
RA	3,804,021	C→G	9.2%	intergenic (‑105/‑39)	PP_3361 ← / → PP_3362	aminotransferase/AsnC family transcriptional regulator
RA	3,804,022	G→A	8.9%	intergenic (‑106/‑38)	PP_3361 ← / → PP_3362	aminotransferase/AsnC family transcriptional regulator
RA	3,829,899	T→C	8.9%	Q494R (CAG→CGG) ‡	PP_3383 ←	gluconate 2‑dehydrogenase flavoprotein subunit
RA	3,829,900	G→A	8.9%	Q494* (CAG→TAG) ‡	PP_3383 ←	gluconate 2‑dehydrogenase flavoprotein subunit
RA	3,844,912	G→T	7.7%	P241Q (CCG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,915	C→A	7.8%	C240F (TGC→TTC) ‡	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,916	A→T	7.8%	C240S (TGC→AGC) ‡	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,924	A→T	12.5%	L237Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,928	C→G	12.7%	G236R (GGC→CGC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,929	C→G	12.7%	A235A (GCG→GCC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,933	A→T	11.7%	L234Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,941	A→T	9.8%	D231E (GAT→GAA) ‡	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,942	T→G	9.7%	D231A (GAT→GCT) ‡	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,945	A→C	9.9%	L230R (CTG→CGG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,869,271	C→T	6.1%	T33M (ACG→ATG)	PP_3418 →	hypothetical protein
RA	3,880,357	A→C	7.9%	N731T (AAC→ACC)	mexF →	multidrug RND transporter MexF
RA	3,881,829	A→T	12.7%	Q163L (CAG→CTG)	oprN →	multidrug RND transporter outer membrane protein OprN
RA	3,883,571	C→G	7.1%	A197G (GCC→GGC) ‡	PP_3428 →	TPR repeat‑containing protein
RA	3,883,572	C→G	7.5%	A197A (GCC→GCG) ‡	PP_3428 →	TPR repeat‑containing protein
RA	3,895,371	G→A	7.4%	A8T (GCC→ACC)	PP_3438 →	membrane protein
RA	3,913,114	A→G	10.0%	L322P (CTG→CCG)	PP_3453 ←	sensor protein RstB
RA	3,919,303	C→T	7.5%	Q1029* (CAG→TAG)	mexB →	multidrug resistance protein MexB
RA	3,920,270	A→G	11.5%	L499P (CTG→CCG)	acs ←	acyl‑CoA synthetase
RA	3,920,273	C→T	11.1%	R498Q (CGG→CAG)	acs ←	acyl‑CoA synthetase
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,953,938	Δ1 bp	7.1%	coding (585/1977 nt)	PP_5606 ←	YVTN beta‑propeller repeat‑containing protein
RA	3,953,944	G→A	7.4%	V193V (GTC→GTT)	PP_5606 ←	YVTN beta‑propeller repeat‑containing protein
RA	3,960,613	T→C	7.3%	intergenic (‑229/‑100)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,960,615	T→A	7.0%	intergenic (‑231/‑98)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,960,617	G→A	7.0%	intergenic (‑233/‑96)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,977,578	C→G	6.8%	G1018A (GGC→GCC)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,977,580	A→T	6.8%	A1017A (GCT→GCA) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,977,582	C→G	6.6%	A1017P (GCT→CCT) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,982,835	G→T	9.8%	G118G (GGG→GGT)	PP_3510 →	hypothetical protein
RA	3,982,838	T→A	9.1%	H119Q (CAT→CAA)	PP_3510 →	hypothetical protein
RA	3,982,841	A→C	9.1%	*120C (TGA→TGC)	PP_3510 →	hypothetical protein
RA	3,983,830	T→G	5.2%	C282G (TGC→GGC)	ilvE →	branched‑chain‑amino acid aminotransferase
RA	3,984,040	G→T	8.5%	intergenic (+34/+156)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,984,041	C→T	8.4%	intergenic (+35/+155)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,984,042	A→G	8.5%	intergenic (+36/+154)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,984,043	A→C	8.6%	intergenic (+37/+153)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,999,708	G→C	5.3%	Q131H (CAG→CAC)	PP_3528 →	ABC transporter substrate‑binding protein
RA	4,004,144	G→T	6.2%	W37L (TGG→TTG)	PP_3533 →	ornithine cyclodeaminase
RA	4,004,148	G→A	6.1%	Q38Q (CAG→CAA)	PP_3533 →	ornithine cyclodeaminase
RA	4,006,596	G→C	7.6%	A427G (GCC→GGC)	PP_3535 ←	gamma‑glutamyltransferase
RA	4,006,824	Δ1 bp	5.8%	coding (1052/1791 nt)	PP_3535 ←	gamma‑glutamyltransferase
RA	4,006,837	C→T	5.5%	E347K (GAG→AAG)	PP_3535 ←	gamma‑glutamyltransferase
RA	4,006,842:1	+A	5.5%	coding (1034/1791 nt)	PP_3535 ←	gamma‑glutamyltransferase
RA	4,006,845	G→C	5.5%	A344G (GCC→GGC)	PP_3535 ←	gamma‑glutamyltransferase
RA	4,014,674	C→T	6.3%	I10I (ATC→ATT)	PP_3543 →	iron‑sulfur cluster‑binding protein
RA	4,028,712	T→A	5.6%	V30V (GTT→GTA)	PP_3553 →	AMP‑binding domain‑containing protein
RA	4,028,713	T→A	5.6%	Y31N (TAC→AAC)	PP_3553 →	AMP‑binding domain‑containing protein
RA	4,049,523	C→T	6.0%	R692C (CGC→TGC)	quiA →	quinate dehydrogenase
RA	4,049,530	T→C	7.4%	V694A (GTG→GCG) ‡	quiA →	quinate dehydrogenase
RA	4,049,531	G→C	6.2%	V694V (GTG→GTC) ‡	quiA →	quinate dehydrogenase
RA	4,049,532	G→A	6.1%	A695T (GCC→ACC)	quiA →	quinate dehydrogenase
RA	4,049,539	A→G	6.3%	Q697R (CAG→CGG)	quiA →	quinate dehydrogenase
RA	4,049,907	A→G	16.4%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,910	C→G	15.1%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,913	C→T	15.2%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,070,375	T→C	8.3%	Q595R (CAG→CGG)	mdtB ←	multidrug transporter membrane protein
RA	4,085,855	T→A	5.3%	V185D (GTC→GAC)	amaD →	D‑lysine oxidase
RA	4,085,863	A→G	6.7%	I188V (ATC→GTC)	amaD →	D‑lysine oxidase
RA	4,086,926	G→A	7.4%	A120T (GCC→ACC)	PP_3597 →	amino acid ABC transporter ATP‑binding protein
RA	4,096,065	A→G	5.3%	T133A (ACC→GCC)	PP_5607 →	membrane protein
RA	4,097,594	C→G	7.1%	G28R (GGG→CGG)	PP_3605 ←	LysR family transcriptional regulator
RA	4,106,205	G→A	6.7%	T256M (ACG→ATG) ‡	PP_3613 ←	L‑sorbosone dehydrogenase
RA	4,106,206	T→C	6.8%	T256A (ACG→GCG) ‡	PP_3613 ←	L‑sorbosone dehydrogenase
RA	4,106,210	G→C	6.8%	N254K (AAC→AAG)	PP_3613 ←	L‑sorbosone dehydrogenase
RA	4,106,213	A→G	6.8%	R253R (CGT→CGC)	PP_3613 ←	L‑sorbosone dehydrogenase
RA	4,106,216	C→T	7.1%	L252L (TTG→TTA)	PP_3613 ←	L‑sorbosone dehydrogenase
RA	4,106,219	G→C	7.1%	G251G (GGC→GGG)	PP_3613 ←	L‑sorbosone dehydrogenase
RA	4,113,808	A→G	9.3%	Y151C (TAC→TGC)	PP_3619 →	hypothetical protein
RA	4,125,301	A→T	7.4%	intergenic (+30/+51)	PP_3628 → / ← PP_3629	choline/carnitine/betaine transporter family protein/hypothetical protein
RA	4,133,977	T→A	9.2%	A351A (GCA→GCT) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,133,979	C→G	9.2%	A351P (GCA→CCA) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,133,981	T→A	9.2%	Q350L (CAG→CTG)	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,134,699	A→G	6.3%	S111P (TCC→CCC)	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,154,084	G→A	8.7%	intergenic (‑26/+57)	PP_3657 ← / ← PP_3658	p‑nitrobenzoate reductase NfnB/aromatic compound MFS transporter
RA	4,166,192	G→T	7.0%	intergenic (‑91/+72)	PP_3666 ← / ← creA	MHS family metabolite MFS transporter/creatinase
RA	4,166,193	A→C	7.0%	intergenic (‑92/+71)	PP_3666 ← / ← creA	MHS family metabolite MFS transporter/creatinase
RA	4,193,720	C→T	6.6%	R25C (CGC→TGC)	PP_5615 →	hypothetical protein
RA	4,244,358	G→C	7.4%	S221R (AGC→AGG)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,248,772	G→A	6.5%	P419S (CCG→TCG)	PP_3724 ←	acyl‑CoA synthetase
RA	4,256,904	C→T	9.3%	M1M (ATG→ATA) † *239* (TGA→TAA)	PP_3729 ← aruR ←	amino acid‑binding protein‑like protein transcriptional regulator AruR
RA	4,264,912	T→A	7.0%	L42Q (CTG→CAG)	vanB →	vanillate O‑demethylase oxidoreductase
RA	4,264,918	A→T	6.9%	D44V (GAC→GTC)	vanB →	vanillate O‑demethylase oxidoreductase
RA	4,264,924	T→A	7.0%	L46Q (CTG→CAG)	vanB →	vanillate O‑demethylase oxidoreductase
RA	4,274,413	G→T	7.7%	V124L (GTG→TTG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,274,419	C→G	7.3%	P126A (CCG→GCG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,274,562	C→T	5.9%	G173G (GGC→GGT)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,274,564	T→A	6.0%	L174Q (CTG→CAG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,277,934	G→C	9.7%	V34V (GTG→GTC)	glcG →	hypothetical protein
RA	4,279,808	C→A	6.5%	A336A (GCC→GCA)	PP_3750 →	GntR family transcriptional regulator
RA	4,279,813	T→G	6.3%	L338R (CTG→CGG)	PP_3750 →	GntR family transcriptional regulator
RA	4,289,430	T→G	7.6%	K1053Q (AAG→CAG)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,432	T→A	7.5%	H1052L (CAC→CTC)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,435	T→A	7.8%	E1051V (GAG→GTG)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,437	C→A	7.8%	L1050L (CTG→CTT)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,300,860	A→G	6.0%	T9A (ACC→GCC)	PP_3774 →	hypothetical protein
RA	4,301,575	G→C	6.4%	intergenic (+65/‑1235)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,301,577	G→C	6.7%	intergenic (+67/‑1233)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,301,579	G→C	6.9%	intergenic (+69/‑1231)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,316,022	A→C	6.2%	A35A (GCA→GCC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,658	C→T	7.0%	H247H (CAC→CAT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,663	T→A	8.3%	V249D (GTC→GAC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,668	A→G	6.9%	M251V (ATG→GTG)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,338,307	C→G	5.0%	P316R (CCG→CGG)	PP_3812 →	lipase
RA	4,340,075	A→T	40.9%	intergenic (+60/‑271)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,076	G→C	26.5%	intergenic (+61/‑270)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,081	A→G	34.3%	intergenic (+66/‑265)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,082	C→T	28.1%	intergenic (+67/‑264)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,083	A→G	32.0%	intergenic (+68/‑263)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,084	C→T	29.0%	intergenic (+69/‑262)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,089	G→C	30.5%	intergenic (+74/‑257)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,090	A→T	25.7%	intergenic (+75/‑256)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,348,705	A→G	50.0%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,363,965	T→C	8.9%	intergenic (+40/‑34)	adhP → / → PP_3840	alcohol dehydrogenase/hypothetical protein
RA	4,363,969	T→G	8.9%	intergenic (+44/‑30)	adhP → / → PP_3840	alcohol dehydrogenase/hypothetical protein
RA	4,363,971	A→G	8.9%	intergenic (+46/‑28)	adhP → / → PP_3840	alcohol dehydrogenase/hypothetical protein
RA	4,363,972	C→T	9.2%	intergenic (+47/‑27)	adhP → / → PP_3840	alcohol dehydrogenase/hypothetical protein
RA	4,363,974	C→A	9.4%	intergenic (+49/‑25)	adhP → / → PP_3840	alcohol dehydrogenase/hypothetical protein
RA	4,363,978	G→A	9.2%	intergenic (+53/‑21)	adhP → / → PP_3840	alcohol dehydrogenase/hypothetical protein
RA	4,369,219	A→G	5.7%	I4I (ATT→ATC)	potF‑III ←	putrescine‑binding protein
RA	4,369,596	G→A	6.0%	D197D (GAC→GAT)	ramA ←	(R)‑stereoselective amidase
RA	4,382,821	G→A	15.5%	intergenic (‑32/+230)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,382,822	T→C	11.2%	intergenic (‑33/+229)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,399,517	G→A	8.1%	L125F (CTC→TTC)	PP_3878 ←	minor capsid protein C
RA	4,399,522	A→T	6.8%	I123N (ATT→AAT)	PP_3878 ←	minor capsid protein C
RA	4,418,163	G→A	10.8%	R73R (CGG→CGA)	PP_3907 →	hypothetical protein
RA	4,418,167	G→C	10.6%	E75Q (GAG→CAG)	PP_3907 →	hypothetical protein
RA	4,418,171	T→C	10.6%	F76S (TTC→TCC)	PP_3907 →	hypothetical protein
RA	4,425,139	G→C	10.4%	intergenic (‑197/‑603)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,425,141	G→C	10.8%	intergenic (‑199/‑601)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,425,143	G→C	9.6%	intergenic (‑201/‑599)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,430,845	C→A	6.9%	A205A (GCC→GCA)	PP_3925 →	hypothetical protein
RA	4,437,175	A→G	8.2%	H112R (CAC→CGC)	PP_3932 →	diguanylate cyclase
RA	4,437,180	C→T	8.0%	R114C (CGC→TGC)	PP_3932 →	diguanylate cyclase
RA	4,442,628	C→G	6.9%	intergenic (‑98/+40)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,442,629	C→G	7.8%	intergenic (‑99/+39)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,445,250	C→G	9.7%	G117A (GGG→GCG) ‡	nicE ←	maleate isomerase
RA	4,445,251	C→G	9.4%	G117R (GGG→CGG) ‡	nicE ←	maleate isomerase
RA	4,450,023	T→A	5.1%	C33S (TGC→AGC)	nicA →	nicotinate dehydrogenase subunit A
RA	4,461,889	T→A	5.8%	I126K (ATA→AAA) ‡	PP_3955 →	permease
RA	4,461,890	A→C	5.9%	I126I (ATA→ATC) ‡	PP_3955 →	permease
RA	4,461,893	G→T	6.3%	A127A (GCG→GCT)	PP_3955 →	permease
RA	4,461,894	T→A	6.3%	L128M (TTG→ATG)	PP_3955 →	permease
RA	4,463,956	G→C	6.1%	intergenic (+3/+25)	PP_3956 → / ← betT‑III	hypothetical protein/choline/carnitine/betaine transporter BetTC
RA	4,472,775	C→T	7.8%	N231N (AAC→AAT)	PP_3962 →	hypothetical protein
RA	4,501,300	A→T	11.8%	intergenic (‑239/+16)	PP_3989 ← / ← PP_t60	DNA‑cytosine methyltransferase/tRNA‑Ser
RA	4,505,522	C→G	5.6%	A99G (GCC→GGC)	PP_3997 →	glycosyl transferase
RA	4,517,188	C→A	9.5%	intergenic (+25/+61)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,189	A→C	9.8%	intergenic (+26/+60)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,190	G→C	9.8%	intergenic (+27/+59)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,191	G→T	9.8%	intergenic (+28/+58)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,192	T→G	9.4%	intergenic (+29/+57)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,521,227	A→G	5.5%	S171P (TCG→CCG)	icd ←	NADP(+)‑specific isocitrate dehydrogenase
RA	4,525,990	C→T	6.1%	S307S (AGC→AGT)	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,525,992	C→A	6.2%	P308Q (CCA→CAA)	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,525,995	G→T	6.1%	R309L (CGG→CTG)	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,525,998	A→C	6.0%	Q310P (CAG→CCG)	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,526,001	T→G	6.3%	L311W (TTG→TGG)	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,526,003	A→G	6.3%	T312A (ACT→GCT)	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,530,025	T→A	23.3%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,530,026	T→A	33.6%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,541,779	T→G	7.2%	Y166D (TAC→GAC) ‡	nhaB →	Na(+)/H(+) antiporter NhaB
RA	4,541,780	A→T	7.2%	Y166F (TAC→TTC) ‡	nhaB →	Na(+)/H(+) antiporter NhaB
RA	4,541,781	C→A	7.3%	Y166* (TAC→TAA) ‡	nhaB →	Na(+)/H(+) antiporter NhaB
RA	4,543,592	C→G	9.0%	S9S (TCC→TCG)	rnz →	ribonuclease Z
RA	4,543,595	C→G	9.0%	A10A (GCC→GCG)	rnz →	ribonuclease Z
RA	4,543,597	G→A	8.7%	G11E (GGG→GAG)	rnz →	ribonuclease Z
RA	4,552,024	C→A	14.3%	intergenic (+118/+63)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,585,320	Δ1 bp	6.8%	coding (264/1986 nt)	glgE ←	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	38.2%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,057:1	+C	61.4%	intergenic (+140/+75)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,080	T→G	11.4%	intergenic (+163/+52)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,082	C→T	15.9%	intergenic (+165/+50)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,607,405	A→C	8.7%	R26S (AGA→AGC)	PP_4079 →	hypothetical protein
RA	4,614,534	Δ1 bp	7.3%	coding (905/4593 nt)	PP_4085 →	rhs family protein
RA	4,614,535	G→T	8.5%	E302D (GAG→GAT)	PP_4085 →	rhs family protein
RA	4,632,497	C→T	5.9%	intergenic (+102/+57)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,632,498	G→T	5.5%	intergenic (+103/+56)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,632,499	A→C	5.5%	intergenic (+104/+55)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,633,809	T→G	7.2%	A434A (GCA→GCC) ‡	uvrC ←	UvrABC system protein C
RA	4,633,810	G→C	7.8%	A434G (GCA→GGA) ‡	uvrC ←	UvrABC system protein C
RA	4,633,811	C→A	7.6%	A434S (GCA→TCA) ‡	uvrC ←	UvrABC system protein C
RA	4,636,158	C→A	9.2%	M17I (ATG→ATT) ‡	PP_4100 ←	Cro/CI family transcriptional regulator
RA	4,636,159	A→T	6.7%	M17K (ATG→AAG) ‡	PP_4100 ←	Cro/CI family transcriptional regulator
RA	4,636,160	T→G	6.7%	M17L (ATG→CTG) ‡	PP_4100 ←	Cro/CI family transcriptional regulator
RA	4,638,254	G→C	6.0%	A324P (GCC→CCC)	PP_4103 →	low‑affinity inorganic phosphate transporter
RA	4,640,393	C→T	8.2%	intergenic (‑31/+27)	PP_4105 ← / ← gabP‑IV	hypothetical protein/gamma‑aminobutyrate permease
RA	4,640,394	G→T	8.8%	intergenic (‑32/+26)	PP_4105 ← / ← gabP‑IV	hypothetical protein/gamma‑aminobutyrate permease
RA	4,640,395	C→G	8.2%	intergenic (‑33/+25)	PP_4105 ← / ← gabP‑IV	hypothetical protein/gamma‑aminobutyrate permease
RA	4,640,396	A→C	7.4%	intergenic (‑34/+24)	PP_4105 ← / ← gabP‑IV	hypothetical protein/gamma‑aminobutyrate permease
RA	4,640,397	A→G	7.7%	intergenic (‑35/+23)	PP_4105 ← / ← gabP‑IV	hypothetical protein/gamma‑aminobutyrate permease
RA	4,650,577	C→T	6.4%	A113T (GCA→ACA)	PP_4113 ←	hypothetical protein
RA	4,654,878	G→A	9.1%	intergenic (+30/‑228)	aceA → / → PP_4118	isocitrate lyase/membrane protein
RA	4,654,883	G→T	9.5%	intergenic (+35/‑223)	aceA → / → PP_4118	isocitrate lyase/membrane protein
RA	4,654,884	T→C	9.5%	intergenic (+36/‑222)	aceA → / → PP_4118	isocitrate lyase/membrane protein
RA	4,654,885	G→A	9.6%	intergenic (+37/‑221)	aceA → / → PP_4118	isocitrate lyase/membrane protein
RA	4,654,886	A→C	9.4%	intergenic (+38/‑220)	aceA → / → PP_4118	isocitrate lyase/membrane protein
RA	4,654,891	T→C	9.8%	intergenic (+43/‑215)	aceA → / → PP_4118	isocitrate lyase/membrane protein
RA	4,665,001	C→G	7.0%	R45R (CGC→CGG)	nuoI →	NADH‑quinone oxidoreductase subunit I
RA	4,665,004	C→G	7.2%	Y46* (TAC→TAG)	nuoI →	NADH‑quinone oxidoreductase subunit I
RA	4,665,011	C→G	5.9%	R49G (CGC→GGC)	nuoI →	NADH‑quinone oxidoreductase subunit I
RA	4,666,304:1	+A	6.6%	coding (70/1854 nt)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,666,312	G→C	6.1%	S26S (TCG→TCC)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,669,731	G→C	9.3%	T21T (ACG→ACC)	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,682,024:1	+A	100%	coding (314/1431 nt)	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,716,337	A→C	5.7%	N523T (AAT→ACT)	PP_4173 →	two‑component system sensor histidine kinase/response regulator
RA	4,716,345	A→G	5.4%	N526D (AAC→GAC)	PP_4173 →	two‑component system sensor histidine kinase/response regulator
RA	4,716,352	G→T	5.5%	S528I (AGT→ATT)	PP_4173 →	two‑component system sensor histidine kinase/response regulator
RA	4,725,040	G→A	5.8%	intergenic (+25/+43)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,725,041	A→T	5.8%	intergenic (+26/+42)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,725,042	T→C	5.7%	intergenic (+27/+41)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,726,926	C→G	10.4%	P152P (CCG→CCC)	brnQ ←	branched‑chain amino acid transporter
RA	4,729,070	C→T	5.8%	E256K (GAA→AAA)	sucC ←	bifunctional succinyl‑CoA synthetase subunit beta/glutaryl‑CoA synthetase subunit beta
RA	4,729,071	A→G	5.8%	L255L (CTT→CTC)	sucC ←	bifunctional succinyl‑CoA synthetase subunit beta/glutaryl‑CoA synthetase subunit beta
RA	4,730,041	C→G	5.1%	G468A (GGC→GCC)	lpdG ←	dihydrolipoyl dehydrogenase
RA	4,732,495	G→C	5.5%	A89G (GCC→GGC)	sucB ←	2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA	4,738,324	C→T	100%	G16S (GGC→AGC)	sdhA ←	succinate dehydrogenase flavoprotein subunit
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,839	C→G	8.5%	intergenic (+76/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,841	T→A	8.5%	intergenic (+78/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,842	T→A	8.5%	intergenic (+79/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,844	C→G	8.0%	intergenic (+81/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,747,082	C→G	6.4%	S227T (AGC→ACC) ‡	etfB ←	electron transfer flavoprotein subunit beta
RA	4,747,083	T→C	6.2%	S227G (AGC→GGC) ‡	etfB ←	electron transfer flavoprotein subunit beta
RA	4,756,942	A→G	5.0%	H72R (CAC→CGC)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,761,543	C→A	5.4%	P68T (CCC→ACC)	pvdN →	pyoverdine biosynthesis‑like protein
RA	4,767,818	C→T	10.7%	intergenic (+32/+37)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,767,819	A→G	10.5%	intergenic (+33/+36)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,778,028	C→T	7.5%	G413G (GGG→GGA)	pvdD ←	non‑ribosomal peptide synthetase
RA	4,781,591	G→C	5.8%	P1908R (CCC→CGC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,110	G→A	7.0%	P1402S (CCG→TCG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,113	C→T	6.9%	V1401I (GTC→ATC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,115	T→C	6.6%	E1400G (GAG→GGG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,789,163	G→C	8.5%	R1559R (CGC→CGG)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,789,166	G→T	10.6%	A1558A (GCC→GCA) ‡	pvdI ←	non‑ribosomal peptide synthetase
RA	4,789,168	C→G	9.1%	A1558P (GCC→CCC) ‡	pvdI ←	non‑ribosomal peptide synthetase
RA	4,789,170	A→C	8.6%	V1557G (GTG→GGG)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,789,173	G→C	9.2%	A1556G (GCC→GGC)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,789,883	C→G	5.8%	V1319V (GTG→GTC)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,789,896	C→G	5.7%	G1315A (GGA→GCA)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,796,604	A→G	25.3%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,612	C→T	29.1%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,614	G→C	30.4%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,617	G→C	28.4%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	26.6%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	26.0%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,797,710	G→A	6.0%	I91I (ATC→ATT) ‡	PP_4224 ←	sensor histidine kinase
RA	4,797,711	A→T	6.4%	I91N (ATC→AAC) ‡	PP_4224 ←	sensor histidine kinase
RA	4,797,712	T→C	6.4%	I91V (ATC→GTC) ‡	PP_4224 ←	sensor histidine kinase
RA	4,807,254	G→A	6.9%	S213F (TCC→TTC)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,807,446	A→T	7.5%	F149Y (TTC→TAC) ‡	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,807,447	A→T	7.5%	F149I (TTC→ATC) ‡	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,808,173	G→A	20.0%	intergenic (‑282/‑273)	PP_4234 ← / → dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
RA	4,809,113	T→A	8.6%	L223Q (CTG→CAG)	dsbD‑II →	thiol/disulfide interchange protein 2
RA	4,809,119	C→G	8.9%	A225G (GCC→GGC)	dsbD‑II →	thiol/disulfide interchange protein 2
RA	4,809,122	G→C	8.8%	S226T (AGC→ACC)	dsbD‑II →	thiol/disulfide interchange protein 2
RA	4,812,183	C→T	7.2%	intergenic (+103/‑290)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,812,184	A→T	7.5%	intergenic (+104/‑289)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,812,185	A→G	7.5%	intergenic (+105/‑288)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,821,134	G→C	5.8%	L3352L (CTC→CTG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,821,138	A→G	7.4%	L3351S (TTG→TCG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,840,005	A→T	6.9%	Y124F (TAC→TTC)	ccoN‑II →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,858,519	A→C	7.8%	intergenic (‑25/+200)	PP_mr50 ← / ← ligA	Bacteria_large_SRP ncRNA/DNA ligase
RA	4,858,520	G→T	7.8%	intergenic (‑26/+199)	PP_mr50 ← / ← ligA	Bacteria_large_SRP ncRNA/DNA ligase
RA	4,863,416	A→G	5.0%	R819R (CGT→CGC)	smc ←	chromosome partition protein Smc
RA	4,863,421	C→G	5.3%	E818Q (GAG→CAG)	smc ←	chromosome partition protein Smc
RA	4,863,422	C→G	5.8%	L817L (CTG→CTC)	smc ←	chromosome partition protein Smc
RA	4,864,671	T→A	6.8%	Q401L (CAG→CTG)	smc ←	chromosome partition protein Smc
RA	4,871,259	C→G	6.9%	P164A (CCC→GCC) ‡	xdhC →	xanthine dehydrogenase accessory factor
RA	4,871,260	C→G	6.9%	P164R (CCC→CGC) ‡	xdhC →	xanthine dehydrogenase accessory factor
RA	4,891,873	G→A	6.9%	V345V (GTG→GTA)	ttuD →	hydroxypyruvate reductase
RA	4,891,874	T→C	6.9%	Y346H (TAC→CAC)	ttuD →	hydroxypyruvate reductase
RA	4,892,999	A→C	7.4%	N297T (AAC→ACC)	pyk →	pyruvate kinase
RA	4,897,900	T→A	6.6%	K215M (AAG→ATG)	PP_4306 ←	hypothetical protein
RA	4,901,656	G→A	6.9%	A374T (GCC→ACC)	PP_4309 →	NCS1 family transporter
RA	4,909,949	C→G	9.9%	intergenic (+342/+137)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,909,950	C→G	10.0%	intergenic (+343/+136)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,917,689	A→G	10.9%	I30V (ATC→GTC) ‡	PP_4328 →	hypothetical protein
RA	4,917,690	T→A	11.2%	I30N (ATC→AAC) ‡	PP_4328 →	hypothetical protein
RA	4,917,691	C→T	11.2%	I30I (ATC→ATT) ‡	PP_4328 →	hypothetical protein
RA	4,927,495	A→G	8.9%	I129I (ATT→ATC) ‡	cheBA ←	chemotaxis response regulator protein‑glutamate methylesterase
RA	4,927,497	T→A	8.9%	I129F (ATT→TTT) ‡	cheBA ←	chemotaxis response regulator protein‑glutamate methylesterase
RA	4,927,502	T→C	9.5%	H127R (CAC→CGC) ‡	cheBA ←	chemotaxis response regulator protein‑glutamate methylesterase
RA	4,927,503	G→A	9.5%	H127Y (CAC→TAC) ‡	cheBA ←	chemotaxis response regulator protein‑glutamate methylesterase
RA	4,927,508	T→A	9.2%	K125M (AAG→ATG)	cheBA ←	chemotaxis response regulator protein‑glutamate methylesterase
RA	4,927,510	C→T	9.8%	E124E (GAG→GAA)	cheBA ←	chemotaxis response regulator protein‑glutamate methylesterase
RA	4,930,408	G→C	7.3%	L189V (CTG→GTG)	cheZ ←	protein phosphatase CheZ
RA	4,930,409	T→A	6.3%	T188T (ACA→ACT) ‡	cheZ ←	protein phosphatase CheZ
RA	4,930,410	G→C	6.4%	T188R (ACA→AGA) ‡	cheZ ←	protein phosphatase CheZ
RA	4,931,195	A→G	5.8%	S59P (TCC→CCC)	cheY ←	two‑component system response regulator
RA	4,931,200	C→T	5.7%	G57D (GGC→GAC)	cheY ←	two‑component system response regulator
RA	4,936,626	G→C	6.4%	intergenic (‑37/‑381)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,628	G→C	6.6%	intergenic (‑39/‑379)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,630	G→C	6.6%	intergenic (‑41/‑377)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,917	A→T	9.5%	intergenic (‑328/‑90)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,918	C→G	9.2%	intergenic (‑329/‑89)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,919	A→T	9.2%	intergenic (‑330/‑88)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,945,327	C→A	13.5%	intergenic (+687/+111)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,945,329	G→T	12.5%	intergenic (+689/+109)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,945,332	C→T	9.7%	intergenic (+692/+106)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,945,333	A→G	12.2%	intergenic (+693/+105)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,945,358	T→C	12.9%	intergenic (+718/+80)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,945,368	A→G	14.5%	intergenic (+728/+70)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,945,370	C→T	14.5%	intergenic (+730/+68)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,945,616	C→G	7.9%	R322P (CGG→CCG)	flhB ←	flagellin export apparatus substrate specificity protein
RA	4,945,621	C→T	7.1%	L320L (CTG→CTA) ‡	flhB ←	flagellin export apparatus substrate specificity protein
RA	4,945,622	A→G	7.0%	L320P (CTG→CCG) ‡	flhB ←	flagellin export apparatus substrate specificity protein
RA	4,945,627	C→G	7.4%	P318P (CCG→CCC)	flhB ←	flagellin export apparatus substrate specificity protein
RA	4,950,972	T→G	11.1%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,950,973	C→A	8.9%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,951,546	G→T	6.1%	R243S (CGC→AGC)	fliK ←	flagellar hook‑length control protein FliK
RA	4,958,594	T→G	5.0%	M36L (ATG→CTG)	fliG ←	flagellar motor switch protein
RA	4,958,599	C→T	6.0%	R34Q (CGG→CAG)	fliG ←	flagellar motor switch protein
RA	4,958,602	A→G	6.4%	L33P (CTG→CCG)	fliG ←	flagellar motor switch protein
RA	4,958,607	C→A	6.2%	Q31H (CAG→CAT)	fliG ←	flagellar motor switch protein
RA	4,969,993	T→G	10.2%	T84P (ACT→CCT)	fliC ←	flagellin
RA	4,970,004	C→A	8.5%	G80V (GGC→GTC)	fliC ←	flagellin
RA	4,971,954	G→T	9.3%	intergenic (‑389/+28)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
RA	4,971,955	C→G	9.8%	intergenic (‑390/+27)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
RA	4,971,956	A→C	10.0%	intergenic (‑391/+26)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,980,589	T→A	13.3%	intergenic (‑28/+40)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,980,590	T→A	16.1%	intergenic (‑29/+39)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,980,591	T→A	13.7%	intergenic (‑30/+38)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,980,807	A→G	6.0%	I382T (ATC→ACC)	flgE ←	flagellar hook protein FlgE
RA	5,003,010	A→G	6.4%	T265T (ACA→ACG)	PP_4409 →	site‑specific recombinase
RA	5,003,012	C→G	6.2%	S266* (TCA→TGA)	PP_4409 →	site‑specific recombinase
RA	5,003,016	A→T	6.1%	R267R (CGA→CGT)	PP_4409 →	site‑specific recombinase
RA	5,026,750	A→T	12.5%	T20T (ACA→ACT)	ocd →	ornithine cyclodeaminase
RA	5,026,752	A→T	12.5%	D21V (GAC→GTC)	ocd →	ornithine cyclodeaminase
RA	5,026,754	A→T	14.0%	S22C (AGT→TGT)	ocd →	ornithine cyclodeaminase
RA	5,030,748	A→G	12.5%	intergenic (+34/‑461)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,030,751	C→T	12.9%	intergenic (+37/‑458)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,033,041	T→C	6.5%	intergenic (+206/‑204)	PP_4435 → / → PP_4437	hypothetical protein/transposase
RA	5,033,047	C→G	7.0%	intergenic (+212/‑198)	PP_4435 → / → PP_4437	hypothetical protein/transposase
RA	5,064,610	A→G	7.9%	G129G (GGT→GGC) ‡	PP_4461 ←	MFS transporter
RA	5,064,612	C→A	8.3%	G129C (GGT→TGT) ‡	PP_4461 ←	MFS transporter
RA	5,064,613	T→G	8.3%	A128A (GCA→GCC) ‡	PP_4461 ←	MFS transporter
RA	5,064,615	C→T	9.2%	A128T (GCA→ACA) ‡	PP_4461 ←	MFS transporter
RA	5,077,222	G→A	7.3%	intergenic (+17/+91)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,077,234	G→T	10.5%	intergenic (+29/+79)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,077,237	A→C	11.1%	intergenic (+32/+76)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,096,286	G→T	9.0%	Y160* (TAC→TAA)	argT ←	lysine/arginine/ornithine ABC transporter substrate‑binding protein
RA	5,096,289	A→C	6.5%	P159P (CCT→CCG)	argT ←	lysine/arginine/ornithine ABC transporter substrate‑binding protein
RA	5,097,206	T→A	8.9%	intergenic (+197/+95)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,207	T→A	8.9%	intergenic (+198/+94)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,413	T→A	6.2%	K660M (AAG→ATG)	acsA‑I ←	acetyl‑CoA synthetase
RA	5,097,419	A→C	5.9%	L658R (CTG→CGG)	acsA‑I ←	acetyl‑CoA synthetase
RA	5,097,421	G→C	5.9%	I657M (ATC→ATG)	acsA‑I ←	acetyl‑CoA synthetase
RA	5,097,424	G→C	5.9%	R656R (CGC→CGG) ‡	acsA‑I ←	acetyl‑CoA synthetase
RA	5,097,426	G→T	6.5%	R656S (CGC→AGC) ‡	acsA‑I ←	acetyl‑CoA synthetase
RA	5,097,432	T→A	6.5%	M654L (ATG→TTG)	acsA‑I ←	acetyl‑CoA synthetase
RA	5,102,667	G→C	7.0%	A262P (GCC→CCC) ‡	phhA →	phenylalanine‑4‑hydroxylase
RA	5,102,668	C→A	7.1%	A262D (GCC→GAC) ‡	phhA →	phenylalanine‑4‑hydroxylase
RA	5,102,669	C→G	7.1%	A262A (GCC→GCG) ‡	phhA →	phenylalanine‑4‑hydroxylase
RA	5,102,670	T→G	6.9%	*263G (TGA→GGA) ‡	phhA →	phenylalanine‑4‑hydroxylase
RA	5,102,671	G→C	6.8%	*263S (TGA→TCA) ‡	phhA →	phenylalanine‑4‑hydroxylase
RA	5,112,355	C→T	5.4%	L19L (CTG→CTA)	rluB ←	23S rRNA pseudouridylate synthase B
RA	5,117,850	T→C	8.8%	H33H (CAT→CAC)	PP_4504 →	hypothetical protein
RA	5,117,855	G→A	8.8%	G35D (GGT→GAT)	PP_4504 →	hypothetical protein
RA	5,118,628	C→G	6.0%	Y134* (TAC→TAG)	PP_4505 →	sensor histidine kinase
RA	5,119,196	G→C	5.3%	E324Q (GAG→CAG)	PP_4505 →	sensor histidine kinase
RA	5,135,883	G→C	6.1%	D229E (GAC→GAG)	PP_4521 ←	aerotaxis receptor
RA	5,139,134	T→C	7.4%	C76R (TGC→CGC)	PP_4524 →	sodium‑solute symporter
RA	5,139,137	G→A	7.2%	A77T (GCA→ACA)	PP_4524 →	sodium‑solute symporter
RA	5,150,406	A→T	6.9%	S354T (TCG→ACG)	PP_4535 ←	hypothetical protein
RA	5,173,244	T→C	11.1%	intergenic (‑285/+47)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,247	G→C	11.3%	intergenic (‑288/+44)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,248	G→C	11.1%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,251	G→A	12.0%	intergenic (‑292/+40)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,181,146	A→T	5.4%	L266H (CTC→CAC)	PP_4560 ←	ribonuclease BN
RA	5,181,149	A→T	5.4%	L265Q (CTG→CAG)	PP_4560 ←	ribonuclease BN
RA	5,181,152	A→T	5.4%	L264Q (CTG→CAG)	PP_4560 ←	ribonuclease BN
RA	5,181,155	A→T	5.4%	V263E (GTG→GAG)	PP_4560 ←	ribonuclease BN
RA	5,182,059	G→T	6.7%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,839	A→C	13.2%	D110A (GAC→GCC)	PP_4562 →	hypothetical protein
RA	5,182,846	T→G	12.8%	R112R (CGT→CGG)	PP_4562 →	hypothetical protein
RA	5,182,847	C→A	12.1%	P113T (CCG→ACG)	PP_4562 →	hypothetical protein
RA	5,182,854	G→T	9.5%	G115V (GGC→GTC)	PP_4562 →	hypothetical protein
RA	5,185,400	C→A	7.4%	A354S (GCC→TCC)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,185,401	G→T	6.4%	R353R (CGC→CGA)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,185,404	A→C	5.9%	D352E (GAT→GAG) ‡	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,185,405	T→G	5.9%	D352A (GAT→GCT) ‡	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,186,047:1	+C	5.3%	coding (413/1716 nt)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,186,052	C→A	5.3%	E136D (GAG→GAT) ‡	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,186,053	T→G	7.9%	E136A (GAG→GCG) ‡	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,186,057	Δ1 bp	5.2%	coding (403/1716 nt)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,194,887	T→G	9.4%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,194,888	C→A	9.3%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,195,985	G→A	8.8%	S177L (TCG→TTG) ‡	ybgJ ←	allophanate hydrolase subunit 1
RA	5,195,986	A→G	8.8%	S177P (TCG→CCG) ‡	ybgJ ←	allophanate hydrolase subunit 1
RA	5,195,989	C→T	8.8%	V176I (GTA→ATA)	ybgJ ←	allophanate hydrolase subunit 1
RA	5,195,990	T→C	8.7%	A175A (GCA→GCG)	ybgJ ←	allophanate hydrolase subunit 1
RA	5,197,502	G→A	6.8%	T361M (ACG→ATG)	PP_4578 ←	MFS transporter
RA	5,200,024	G→A	6.6%	R66C (CGC→TGC)	PP_4580 ←	hypothetical protein
RA	5,200,026	T→C	6.5%	Y65C (TAC→TGC)	PP_4580 ←	hypothetical protein
RA	5,200,028	G→C	6.7%	H64Q (CAC→CAG) ‡	PP_4580 ←	hypothetical protein
RA	5,200,030	G→A	7.3%	H64Y (CAC→TAC) ‡	PP_4580 ←	hypothetical protein
RA	5,200,032	T→C	7.4%	Q63R (CAG→CGG)	PP_4580 ←	hypothetical protein
RA	5,202,981	C→A	7.0%	L430M (CTG→ATG)	PP_4583 →	putative Peptidase
RA	5,208,682	G→A	8.8%	D9D (GAC→GAT) ‡	PP_4589 ←	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	5,208,683	T→C	8.9%	D9G (GAC→GGC) ‡	PP_4589 ←	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	5,212,472	C→T	5.4%	intergenic (+36/+58)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,475	G→A	5.4%	intergenic (+39/+55)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,487	A→G	7.3%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,488	C→A	7.5%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,491	T→G	7.7%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,492	C→T	7.6%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,504	T→C	9.4%	intergenic (+68/+26)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,507	A→G	9.4%	intergenic (+71/+23)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,955	T→G	6.2%	K253Q (AAG→CAG)	PP_4594 ←	cystathionine gamma‑synthase
RA	5,212,956	C→A	5.9%	L252L (CTG→CTT)	PP_4594 ←	cystathionine gamma‑synthase
RA	5,213,894	A→G	9.7%	T42A (ACC→GCC)	ybaO →	LRP‑like transcriptional regulator
RA	5,218,235	T→A	8.7%	S95T (TCG→ACG)	PP_4598 →	membrane protein
RA	5,218,238	T→A	7.7%	F96I (TTC→ATC) ‡	PP_4598 →	membrane protein
RA	5,218,239	T→A	7.6%	F96Y (TTC→TAC) ‡	PP_4598 →	membrane protein
RA	5,218,242	T→A	7.7%	V97E (GTG→GAG)	PP_4598 →	membrane protein
RA	5,221,731	C→T	7.6%	A286V (GCC→GTC)	PP_4601 →	LysR family transcriptional regulator
RA	5,226,653	T→A	6.5%	intergenic (+15/+15)	PP_4605 → / ← PP_4606	AraC family transcriptional regulator/ferric siderophore receptor
RA	5,229,170	G→A	8.7%	intergenic (‑112/+64)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,179	G→A	10.1%	intergenic (‑121/+55)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,191	Δ1 bp	10.0%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,195	C→G	8.8%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,198	C→G	10.0%	intergenic (‑140/+36)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,201:1	+C	9.8%	intergenic (‑143/+33)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,233,543	T→C	6.4%	V136A (GTC→GCC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,233,546	A→T	6.4%	D137V (GAC→GTC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,233,549	G→A	6.4%	G138D (GGC→GAC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,235,310	C→G	6.6%	S215W (TCG→TGG)	fecA →	outer membrane ferric citrate porin
RA	5,238,925	G→T	8.1%	intergenic (+233/‑48)	PP_5701 → / → PP_4616	hypothetical protein/hypothetical protein
RA	5,240,567	C→G	5.5%	H43Q (CAC→CAG)	PP_4618 →	hypothetical protein
RA	5,240,569	A→T	5.3%	D44V (GAC→GTC)	PP_4618 →	hypothetical protein
RA	5,240,571	C→G	5.4%	L45V (CTG→GTG)	PP_4618 →	hypothetical protein
RA	5,246,070	A→C	6.3%	L864R (CTC→CGC)	PP_4623 ←	hypothetical protein
RA	5,246,073	G→A	6.4%	T863I (ACC→ATC) ‡	PP_4623 ←	hypothetical protein
RA	5,246,074	T→C	6.4%	T863A (ACC→GCC) ‡	PP_4623 ←	hypothetical protein
RA	5,246,077	G→T	6.5%	R862R (CGG→AGG)	PP_4623 ←	hypothetical protein
RA	5,257,689	A→C	7.9%	V38G (GTG→GGG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,257,696	G→C	11.5%	P36A (CCG→GCG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,257,697	G→C	11.7%	R35R (CGC→CGG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,257,704	G→T	11.5%	P33H (CCC→CAC)	PP_4634 ←	alpha/beta family hydrolase
RA	5,273,039	C→G	8.1%	S62R (AGC→AGG)	rlmG →	ribosomal RNA large subunit methyltransferase G
RA	5,273,045	Δ1 bp	8.3%	coding (192/1125 nt)	rlmG →	ribosomal RNA large subunit methyltransferase G
RA	5,276,837	A→G	10.0%	intergenic (‑141/‑203)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,276,838	A→T	10.0%	intergenic (‑142/‑202)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,276,840	G→A	9.8%	intergenic (‑144/‑200)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,276,843	T→C	9.8%	intergenic (‑147/‑197)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,276,845	A→T	11.4%	intergenic (‑149/‑195)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,276,846	C→T	10.1%	intergenic (‑150/‑194)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,285,611	A→T	7.7%	intergenic (+96/+27)	PP_4658 → / ← ggt	methyl‑accepting chemotaxis protein/gamma‑glutamyltranspeptidase
RA	5,285,612	A→T	8.1%	intergenic (+97/+26)	PP_4658 → / ← ggt	methyl‑accepting chemotaxis protein/gamma‑glutamyltranspeptidase
RA	5,285,613	A→T	7.6%	intergenic (+98/+25)	PP_4658 → / ← ggt	methyl‑accepting chemotaxis protein/gamma‑glutamyltranspeptidase
RA	5,295,528	A→T	6.7%	intergenic (+59/+67)	PP_4668 → / ← PP_4669	LysR family transcriptional regulator/OmpA family protein
RA	5,295,529	A→C	6.7%	intergenic (+60/+66)	PP_4668 → / ← PP_4669	LysR family transcriptional regulator/OmpA family protein
RA	5,297,191	A→C	6.4%	S58A (TCG→GCG)	TpbB ←	diguanylate cyclase
RA	5,297,192	G→C	5.6%	R57R (CGC→CGG)	TpbB ←	diguanylate cyclase
RA	5,297,195	G→C	5.9%	A56A (GCC→GCG) ‡	TpbB ←	diguanylate cyclase
RA	5,297,196	G→T	5.9%	A56D (GCC→GAC) ‡	TpbB ←	diguanylate cyclase
RA	5,297,238	A→T	7.4%	L42H (CTC→CAC)	TpbB ←	diguanylate cyclase
RA	5,324,511	A→G	6.1%	D382G (GAC→GGC)	PP_4684 →	kinase‑like domain‑containing protein
RA	5,324,514	C→T	6.2%	A383V (GCC→GTC)	PP_4684 →	kinase‑like domain‑containing protein
RA	5,325,511	T→A	7.1%	noncoding (133/149 nt)	PP_mr52 →	PrrF ncRNA
RA	5,326,469	T→C	8.2%	intergenic (‑38/+65)	PP_4686 ← / ← hmuV	putative lipoprotein/hemin import ATP‑binding protein HmuV
RA	5,326,472	A→C	8.2%	intergenic (‑41/+62)	PP_4686 ← / ← hmuV	putative lipoprotein/hemin import ATP‑binding protein HmuV
RA	5,326,475	G→C	8.4%	intergenic (‑44/+59)	PP_4686 ← / ← hmuV	putative lipoprotein/hemin import ATP‑binding protein HmuV
RA	5,326,478	G→T	8.7%	intergenic (‑47/+56)	PP_4686 ← / ← hmuV	putative lipoprotein/hemin import ATP‑binding protein HmuV
RA	5,326,481	G→A	8.6%	intergenic (‑50/+53)	PP_4686 ← / ← hmuV	putative lipoprotein/hemin import ATP‑binding protein HmuV
RA	5,334,338	G→A	5.7%	P256P (CCG→CCA)	PP_4695 →	two‑component system sensor histidine kinase
RA	5,338,050	C→G	11.8%	intergenic (+57/‑227)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,338,053	C→G	12.0%	intergenic (+60/‑224)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,338,629	T→C	7.4%	noncoding (353/395 nt)	PP_mr53 →	CrcZ ncRNA
RA	5,338,632	G→A	7.8%	noncoding (356/395 nt)	PP_mr53 →	CrcZ ncRNA
RA	5,356,806	G→T	8.2%	T652N (ACC→AAC)	infB ←	translation initiation factor IF‑2
RA	5,356,810	T→C	9.0%	K651E (AAG→GAG)	infB ←	translation initiation factor IF‑2
RA	5,356,811	G→A	8.8%	L650L (CTC→CTT)	infB ←	translation initiation factor IF‑2
RA	5,356,815	A→C	8.8%	V649G (GTT→GGT)	infB ←	translation initiation factor IF‑2
RA	5,364,420	C→G	7.3%	G72R (GGT→CGT)	folP ←	dihydropteroate synthase
RA	5,364,421	C→G	7.7%	P71P (CCG→CCC)	folP ←	dihydropteroate synthase
RA	5,381,267	T→C	10.8%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,268	T→A	10.6%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,269	G→A	10.9%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,406,053	C→G	7.2%	A185A (GCG→GCC)	PP_4750 ←	amino acid ABC transporter permease
RA	5,406,056	C→G	7.2%	A184A (GCG→GCC)	PP_4750 ←	amino acid ABC transporter permease
RA	5,430,392	A→G	7.4%	intergenic (‑74/+87)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,396	A→G	7.7%	intergenic (‑78/+83)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,397:1	+A	8.7%	intergenic (‑79/+82)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,404	Δ1 bp	8.5%	intergenic (‑86/+75)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,406	C→T	9.1%	intergenic (‑88/+73)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,410	C→T	8.7%	intergenic (‑92/+69)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,437,398	A→T	6.3%	V54E (GTG→GAG)	PP_4775 ←	hypothetical protein
RA	5,440,368	G→A	6.8%	A153V (GCG→GTG)	amn ←	AMP nucleosidase
RA	5,462,393	T→G	7.3%	intergenic (+16/+18)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,462,394	G→C	6.7%	intergenic (+17/+17)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,462,395	C→A	6.7%	intergenic (+18/+16)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,463,394:1	+G	6.9%	intergenic (‑45/+54)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,463,400	T→A	7.4%	intergenic (‑51/+48)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,463,401	T→A	7.4%	intergenic (‑52/+47)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,463,407	Δ1 bp	5.6%	intergenic (‑58/+41)	PP_4799 ← / ← lipA	muramoyltetrapeptide carboxypeptidase/lipoyl synthase
RA	5,469,180	A→T	14.8%	L273H (CTC→CAC)	mrdB ←	murein transpeptidase factor
RA	5,469,183	A→T	14.8%	V272E (GTG→GAG)	mrdB ←	murein transpeptidase factor
RA	5,474,996	T→C	8.2%	intergenic (‑202/‑104)	proA ← / → PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase
RA	5,479,939:1	+G	6.7%	coding (463/993 nt)	prmA →	ribosomal protein L11 methyltransferase
RA	5,485,150	A→G	26.2%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,153	A→G	27.6%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,154	T→C	25.6%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,159	G→A	28.1%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,162	T→C	27.5%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,167	G→A	22.2%	intergenic (+73/‑74)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,168	C→T	22.1%	intergenic (+74/‑73)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,171	C→T	21.3%	intergenic (+77/‑70)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,486,711	T→A	9.1%	L14M (TTG→ATG) ‡	PP_4824 →	two‑component system sensor histidine kinase/response regulator
RA	5,486,712	T→A	8.8%	L14* (TTG→TAG) ‡	PP_4824 →	two‑component system sensor histidine kinase/response regulator
RA	5,489,780	A→C	6.3%	M88L (ATG→CTG) ‡	PP_4825 →	MarC family membrane protein
RA	5,489,781	T→A	7.6%	M88K (ATG→AAG) ‡	PP_4825 →	MarC family membrane protein
RA	5,489,782	G→T	6.5%	M88I (ATG→ATT) ‡	PP_4825 →	MarC family membrane protein
RA	5,491,492	C→G	5.8%	intergenic (‑28/+24)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,491,494	T→C	6.1%	intergenic (‑30/+22)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,503,135	C→A	6.1%	L29M (CTG→ATG) ‡	oprC →	copper receptor OprC
RA	5,503,136	T→G	6.1%	L29R (CTG→CGG) ‡	oprC →	copper receptor OprC
RA	5,503,142	C→G	5.9%	A31G (GCC→GGC)	oprC →	copper receptor OprC
RA	5,503,148	C→A	6.1%	P33H (CCT→CAT) ‡	oprC →	copper receptor OprC
RA	5,503,149	T→G	7.1%	P33P (CCT→CCG) ‡	oprC →	copper receptor OprC
RA	5,514,659	A→T	8.2%	intergenic (+38/+99)	mnaT → / ← cbpM	L‑amino acid N‑acyltransferase/chaperone modulatory protein
RA	5,514,660	A→T	8.2%	intergenic (+39/+98)	mnaT → / ← cbpM	L‑amino acid N‑acyltransferase/chaperone modulatory protein
RA	5,514,661	A→T	8.3%	intergenic (+40/+97)	mnaT → / ← cbpM	L‑amino acid N‑acyltransferase/chaperone modulatory protein
RA	5,518,734	T→A	10.7%	K59N (AAA→AAT) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,735	T→A	9.9%	K59I (AAA→ATA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,736	T→A	10.4%	K59* (AAA→TAA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,523,003	G→C	8.9%	P624A (CCG→GCG)	yhjG ←	protein YhjG
RA	5,523,005	T→A	8.4%	K623M (AAG→ATG) ‡	yhjG ←	protein YhjG
RA	5,523,006	T→A	8.9%	K623* (AAG→TAG) ‡	yhjG ←	protein YhjG
RA	5,523,008	G→C	9.4%	A622G (GCC→GGC)	yhjG ←	protein YhjG
RA	5,527,044	T→C	6.1%	L186P (CTG→CCG)	PP_4860 →	mannose‑6‑phosphate isomerase
RA	5,527,439	C→T	6.4%	R318C (CGT→TGT)	PP_4860 →	mannose‑6‑phosphate isomerase
JC	5,555,608	+GCC	92.7%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,557,922	T→G	6.5%	intergenic (‑293/+38)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,557,923	C→A	7.3%	intergenic (‑294/+37)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,557,924	T→G	6.2%	intergenic (‑295/+36)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,557,925	C→A	6.0%	intergenic (‑296/+35)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,562,882	C→G	5.3%	M1V (GTG→GTC) †‡	hflK ←	integral membrane ATP‑dependent zinc metallopeptidase
RA	5,562,884	C→G	5.7%	M1M (GTG→CTG) †‡	hflK ←	integral membrane ATP‑dependent zinc metallopeptidase
RA	5,577,338	T→G	6.0%	C354G (TGC→GGC)	PP_4906 →	hypothetical protein
RA	5,577,346	C→G	6.1%	H356Q (CAC→CAG)	PP_4906 →	hypothetical protein
RA	5,577,347	C→G	6.4%	L357V (CTG→GTG)	PP_4906 →	hypothetical protein
RA	5,577,355	C→A	6.5%	A359A (GCC→GCA)	PP_4906 →	hypothetical protein
RA	5,578,340	T→A	6.6%	L161Q (CTG→CAG)	rhdA →	thiosulfate sulfurtransferase
RA	5,586,523	T→C	6.2%	T255A (ACC→GCC)	PP_4914 ←	phytase‑like protein
RA	5,586,526	A→G	6.5%	F254L (TTT→CTT)	PP_4914 ←	phytase‑like protein
RA	5,586,528	A→T	6.4%	L253Q (CTG→CAG)	PP_4914 ←	phytase‑like protein
RA	5,586,533	G→A	6.3%	G251G (GGC→GGT)	PP_4914 ←	phytase‑like protein
RA	5,608,994	G→C	7.7%	R202G (CGC→GGC)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,997	C→G	7.6%	E201Q (GAG→CAG)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,609,000	G→C	7.8%	P200A (CCT→GCT)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,615,630	G→C	9.4%	intergenic (‑109/+22)	hldE ← / ← msbA	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase/lipid A export ATP‑binding/permease MsbA
RA	5,618,315	G→A	6.4%	Q113* (CAA→TAA)	wzy ←	O‑antigen polymerase
RA	5,621,706	G→A	100%	L194F (CTT→TTT)	PP_4940 ←	glycosyltransferase
RA	5,641,185	G→C	7.9%	G283A (GGC→GCC) ‡	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,641,186	C→G	7.7%	G283G (GGC→GGG) ‡	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,641,187	G→C	8.0%	A284P (GCG→CCG)	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,641,455	C→G	8.4%	S373C (TCC→TGC)	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,641,460	C→G	9.1%	Q375E (CAG→GAG)	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,643,062	Δ1 bp	5.1%	coding (1233/1386 nt)	dbpA →	23S rRNA specific ATP‑dependent RNA helicase
RA	5,645,307	C→T	6.7%	A220A (GCC→GCT)	PP_4954 →	membrane protein
RA	5,645,311	C→T	6.5%	L222L (CTG→TTG) ‡	PP_4954 →	membrane protein
RA	5,645,313	G→C	6.5%	L222L (CTG→CTC) ‡	PP_4954 →	membrane protein
RA	5,645,315	A→G	6.6%	N223S (AAC→AGC)	PP_4954 →	membrane protein
RA	5,645,319	A→G	6.3%	A224A (GCA→GCG)	PP_4954 →	membrane protein
RA	5,650,790	G→C	5.6%	Q135E (CAG→GAG)	PP_4959 ←	diguanylate cyclase
RA	5,650,792	T→A	5.5%	D134V (GAC→GTC)	PP_4959 ←	diguanylate cyclase
RA	5,650,794	G→C	6.4%	L133L (CTC→CTG)	PP_4959 ←	diguanylate cyclase
RA	5,651,374	T→G	10.0%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,377	C→A	9.9%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,655,626:1	+A	12.6%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,631	T→G	12.5%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	16.7%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,641	Δ1 bp	16.5%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,659,684	T→A	9.9%	L243Q (CTG→CAG)	metK →	methionine adenosyltransferase
RA	5,659,686	A→T	10.6%	T244S (ACT→TCT) ‡	metK →	methionine adenosyltransferase
RA	5,659,688	T→A	9.6%	T244T (ACT→ACA) ‡	metK →	methionine adenosyltransferase
RA	5,667,259	A→C	9.1%	intergenic (+37/+34)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,679,142	G→T	6.0%	E256D (GAG→GAT)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,143	A→C	7.1%	I257L (ATC→CTC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
JC	5,681,415	+CGGG	93.1%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,688,520	T→A	6.5%	Q149L (CAG→CTG)	pilJ ←	twitching motility protein PilJ
RA	5,688,523:1	+G	6.5%	coding (443/2061 nt)	pilJ ←	twitching motility protein PilJ
RA	5,697,314	C→A	7.6%	intergenic (+24/‑53)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,697,316	G→C	7.4%	intergenic (+26/‑51)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,697,318	T→G	9.2%	intergenic (+28/‑49)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,707,112	T→C	5.5%	L377P (CTG→CCG) ‡	PP_5009 →	hypothetical protein
RA	5,707,113	G→C	6.1%	L377L (CTG→CTC) ‡	PP_5009 →	hypothetical protein
RA	5,711,909	G→A	5.3%	V250M (GTG→ATG)	ubiE →	ubiquinone/menaquinone biosynthesis C‑methyltransferase UbiE
RA	5,728,840	A→G	7.4%	intergenic (‑203/+121)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,728,843	A→T	6.8%	intergenic (‑206/+118)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,728,844	A→T	6.8%	intergenic (‑207/+117)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,728,847	C→T	6.8%	intergenic (‑210/+114)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,740,457	G→A	13.8%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,467	T→G	20.2%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,470	A→T	19.0%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,471	A→T	20.5%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,474	C→A	18.8%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,484	T→C	7.4%	intergenic (+49/+22)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,741,508	A→T	6.2%	intergenic (‑179/+49)	PP_5038 ← / ← PP_5039	lipoprotein/hypothetical protein
RA	5,743,335	T→C	7.9%	intergenic (‑168/+79)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,349	A→G	9.5%	intergenic (‑182/+65)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,350	C→T	9.6%	intergenic (‑183/+64)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,351	A→C	12.3%	intergenic (‑184/+63)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,352	G→T	11.8%	intergenic (‑185/+62)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,360	C→T	12.3%	intergenic (‑193/+54)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,362	T→C	12.0%	intergenic (‑195/+52)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,363	G→A	12.6%	intergenic (‑196/+51)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,365	A→G	12.5%	intergenic (‑198/+49)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,750,429	A→T	6.5%	L378L (CTT→CTA) ‡	thiI ←	tRNA sulfurtransferase
RA	5,750,430	A→T	6.6%	L378H (CTT→CAT) ‡	thiI ←	tRNA sulfurtransferase
RA	5,751,719	G→T	6.6%	intergenic (‑157/‑314)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,725	A→G	7.9%	intergenic (‑163/‑308)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,729	G→T	7.7%	intergenic (‑167/‑304)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,730	G→T	7.7%	intergenic (‑168/‑303)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,735	A→C	6.8%	intergenic (‑173/‑298)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,736	A→C	6.8%	intergenic (‑174/‑297)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,740	C→T	8.3%	intergenic (‑178/‑293)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,746	A→C	7.7%	intergenic (‑184/‑287)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,763,404	A→G	6.2%	K260K (AAA→AAG)	PP_5057 →	M23/M37 family peptidase
RA	5,768,090	Δ1 bp	6.4%	coding (2782/4716 nt)	PP_5060 ←	hypothetical protein
RA	5,770,438	A→T	6.2%	L145H (CTT→CAT)	PP_5060 ←	hypothetical protein
RA	5,770,444	A→T	5.9%	M143K (ATG→AAG)	PP_5060 ←	hypothetical protein
RA	5,777,401	G→T	8.3%	intergenic (+20/+23)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,777,402	C→G	8.3%	intergenic (+21/+22)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,777,403	A→C	8.5%	intergenic (+22/+21)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,790,159	A→T	6.4%	intergenic (+38/+30)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,804,551	T→A	5.7%	N220Y (AAC→TAC)	PP_5083 ←	type IV pili biogenesis protein PilM
RA	5,807,984	A→G	12.8%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,985	T→C	13.0%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,986	G→A	13.0%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,987	C→T	12.9%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,816,917	C→T	20.0%	intergenic (+103/+26)	PP_5092 → / ← pilT	NLP/P60 protein/twitching motility protein
RA	5,821,897	T→A	9.6%	L173Q (CTG→CAG)	metW →	methionine biosynthesis protein MetW
RA	5,824,715	C→A	7.9%	intergenic (+139/+35)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,845,237	C→A	8.0%	R50R (CGG→AGG)	coaD →	phosphopantetheine adenylyltransferase
RA	5,845,958	A→G	8.3%	intergenic (+30/+61)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,845,963	G→A	7.0%	intergenic (+35/+56)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,845,972	T→C	6.9%	intergenic (+44/+47)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,845,977	C→T	7.6%	intergenic (+49/+42)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,849,046	C→T	6.3%	intergenic (+21/‑250)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,849,047	C→G	6.3%	intergenic (+22/‑249)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,849,048	A→G	6.2%	intergenic (+23/‑248)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,851,171	T→A	6.3%	intergenic (+34/+34)	ilvD → / ← PP_5129	dihydroxy‑acid dehydratase/hypothetical protein
RA	5,854,890	T→A	7.7%	F304I (TTC→ATC)	tcyP →	sodium/cystine symporter
RA	5,857,711	A→G	5.7%	D87G (GAC→GGC)	PP_5134 →	hypothetical protein
RA	5,857,961	T→A	5.4%	L170L (CTT→CTA)	PP_5134 →	hypothetical protein
RA	5,866,696	G→T	7.6%	intergenic (+19/+38)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,866,697	A→C	8.8%	intergenic (+20/+37)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,867,733:1	+C	7.9%	intergenic (‑28/+24)	thyA ← / ← lgt	thymidylate synthase/prolipoprotein diacylglyceryl transferase
RA	5,867,738	Δ1 bp	7.5%	intergenic (‑33/+19)	thyA ← / ← lgt	thymidylate synthase/prolipoprotein diacylglyceryl transferase
RA	5,872,021	T→A	8.5%	D211V (GAC→GTC)	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,882,916	A→G	7.5%	L93P (CTG→CCG)	PP_5156 ←	hypothetical protein
RA	5,887,629	C→A	7.1%	P162Q (CCA→CAA)	PP_5162 →	hypothetical protein
RA	5,887,632	T→G	6.4%	I163S (ATC→AGC)	PP_5162 →	hypothetical protein
RA	5,887,637	A→G	6.6%	K165E (AAG→GAG)	PP_5162 →	hypothetical protein
RA	5,887,641	C→A	6.6%	A166D (GCT→GAT)	PP_5162 →	hypothetical protein
RA	5,887,644	T→G	6.9%	L167W (TTG→TGG)	PP_5162 →	hypothetical protein
RA	5,903,165	A→C	10.9%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,914,124	C→T	7.3%	intergenic (+16/+137)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,126	C→G	7.2%	intergenic (+18/+135)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,128	A→G	7.5%	intergenic (+20/+133)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,948,683	T→A	6.1%	intergenic (‑64/+18)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,950,776	G→A	8.2%	S498N (AGC→AAC)  R727R (CGC→CGT)	ppx → ppk ←	exopolyphosphatase polyphosphate kinase
RA	5,950,783	T→C	8.7%	R500R (CGT→CGC)  N725S (AAC→AGC)	ppx → ppk ←	exopolyphosphatase polyphosphate kinase
RA	5,951,589	T→C	6.4%	Q456Q (CAA→CAG)	ppk ←	polyphosphate kinase
RA	5,955,821	A→C	7.3%	intergenic (+47/+157)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,826	A→G	6.0%	intergenic (+52/+152)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,828	G→C	6.2%	intergenic (+54/+150)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,836	G→C	6.0%	intergenic (+62/+142)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,845	T→G	5.5%	intergenic (+71/+133)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,958,077	A→G	8.2%	H494R (CAC→CGC)	cyaA →	adenylate cyclase
RA	5,962,015	A→C	7.0%	D304A (GAT→GCT)	lysA‑II →	diaminopimelate decarboxylase
RA	5,962,020	G→T	7.2%	A306S (GCG→TCG)	lysA‑II →	diaminopimelate decarboxylase
RA	5,966,454	C→T	6.1%	V413V (GTG→GTA)	amtB ←	ammonium transporter AmtB
RA	5,978,102	T→A	5.5%	D9V (GAC→GTC)	PP_5240 ←	two‑component system response regulator
RA	5,983,221	T→A	5.8%	M1289K (ATG→AAG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,984,436	T→C	15.5%	intergenic (+32/+57)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,442	G→A	18.4%	intergenic (+38/+51)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,444	T→C	16.5%	intergenic (+40/+49)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,447	G→A	15.3%	intergenic (+43/+46)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,449	T→C	16.7%	intergenic (+45/+44)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,455	G→A	17.6%	intergenic (+51/+38)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
MC JC	5,985,398	Δ11 bp	100%	coding (188‑198/405 nt)	PP_5244 ←	AraC family transcriptional regulator
RA	5,987,130	T→G	100%	I71S (ATC→AGC)	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,988,809	G→A	30.3%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	29.2%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	26.8%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	26.4%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	26.4%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	26.6%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	26.7%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	24.5%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	26.4%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	27.5%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	26.8%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	28.3%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,997,189:1	+G	13.3%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	5,997,194	Δ1 bp	14.0%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,003,645	C→A	6.6%	G98C (GGC→TGC)	amaB ←	L‑piperidine‑6‑carboxylate dehydrogenase
RA	6,013,836	G→A	16.7%	intergenic (+41/+69)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,838	A→G	16.8%	intergenic (+43/+67)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,845	G→C	14.3%	intergenic (+50/+60)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,846	T→G	20.4%	intergenic (+51/+59)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,847	C→T	15.9%	intergenic (+52/+58)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,852	A→G	15.6%	intergenic (+57/+53)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,853	C→A	14.1%	intergenic (+58/+52)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,854	G→C	16.5%	intergenic (+59/+51)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,861	C→T	14.5%	intergenic (+66/+44)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,863	T→C	9.6%	intergenic (+68/+42)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,021,700	T→G	8.1%	intergenic (‑51/‑93)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,021,701	C→A	9.3%	intergenic (‑52/‑92)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,043,666	T→A	8.4%	intergenic (+18/+16)	gmk → / ← PP_5297	deoxyguanylate kinase/guanylate kinase/amino acid transporter
RA	6,048,020	G→A	6.6%	M165I (ATG→ATA)	PP_5300 →	LysR family transcriptional regulator
RA	6,049,442	A→T	10.4%	K102* (AAG→TAG) ‡	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,049,443	A→T	10.3%	K102M (AAG→ATG) ‡	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,052,874	A→C	6.6%	L198R (CTG→CGG) ‡	PP_5305 ←	epimerase/dehydratase‑like protein
RA	6,052,875	G→T	7.9%	L198M (CTG→ATG) ‡	PP_5305 ←	epimerase/dehydratase‑like protein
RA	6,058,454	G→A	5.2%	V551I (GTC→ATC)	recG →	junction‑specific ATP‑dependent DNA helicase
RA	6,058,461	A→T	5.2%	E553V (GAG→GTG)	recG →	junction‑specific ATP‑dependent DNA helicase
RA	6,061,025	T→C	5.7%	intergenic (‑106/+43)	PP_5312 ← / ← hupA	hypothetical protein/DNA‑binding protein HU‑alpha
RA	6,061,026	T→C	5.7%	intergenic (‑107/+42)	PP_5312 ← / ← hupA	hypothetical protein/DNA‑binding protein HU‑alpha
RA	6,061,027	G→A	5.6%	intergenic (‑108/+41)	PP_5312 ← / ← hupA	hypothetical protein/DNA‑binding protein HU‑alpha
RA	6,061,028	G→A	5.6%	intergenic (‑109/+40)	PP_5312 ← / ← hupA	hypothetical protein/DNA‑binding protein HU‑alpha
RA	6,064,575	A→T	6.4%	intergenic (+16/+18)	ubiA → / ← PP_5319	4‑hydroxybenzoate octaprenyltransferase/hypothetical protein
RA	6,064,576	G→C	6.8%	intergenic (+17/+17)	ubiA → / ← PP_5319	4‑hydroxybenzoate octaprenyltransferase/hypothetical protein
RA	6,064,577	A→T	6.9%	intergenic (+18/+16)	ubiA → / ← PP_5319	4‑hydroxybenzoate octaprenyltransferase/hypothetical protein
RA	6,077,520	T→G	6.7%	E60A (GAG→GCG) ‡	PP_5329 ←	phosphate ABC transporter substrate‑binding protein
RA	6,077,521	C→A	7.3%	E60* (GAG→TAG) ‡	PP_5329 ←	phosphate ABC transporter substrate‑binding protein
RA	6,078,930	C→T	8.1%	S99N (AGC→AAC)	PP_5330 ←	MFS transporter
RA	6,078,934	G→C	8.1%	L98V (CTG→GTG)	PP_5330 ←	MFS transporter
RA	6,078,935	G→C	8.5%	T97T (ACC→ACG) ‡	PP_5330 ←	MFS transporter
RA	6,078,936	G→C	8.5%	T97S (ACC→AGC) ‡	PP_5330 ←	MFS transporter
RA	6,078,940	A→G	9.6%	F96L (TTC→CTC)	PP_5330 ←	MFS transporter
RA	6,080,988	T→A	7.8%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,080,989	T→A	8.7%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,087,353	G→T	5.1%	R292L (CGG→CTG)	oruR →	ornithine utilization transcriptional regulator
RA	6,087,357	T→A	6.7%	H293Q (CAT→CAA)	oruR →	ornithine utilization transcriptional regulator
RA	6,087,358	T→A	5.9%	L294M (TTG→ATG)	oruR →	ornithine utilization transcriptional regulator
RA	6,087,362	A→C	5.8%	Q295P (CAG→CCG)	oruR →	ornithine utilization transcriptional regulator
RA	6,089,616	G→T	5.8%	L265L (CTG→CTT)	potF‑IV →	putrescine‑binding protein
RA	6,089,619	C→T	6.9%	P266P (CCC→CCT)	potF‑IV →	putrescine‑binding protein
RA	6,089,620	A→T	6.0%	K267* (AAG→TAG) ‡	potF‑IV →	putrescine‑binding protein
RA	6,089,621	A→G	6.1%	K267R (AAG→AGG) ‡	potF‑IV →	putrescine‑binding protein
RA	6,089,624	A→C	6.0%	E268A (GAA→GCA)	potF‑IV →	putrescine‑binding protein
RA	6,094,076	G→A	6.5%	R399C (CGC→TGC)	pycB ←	pyruvate carboxylase subunit B
RA	6,104,053	T→A	5.4%	intergenic (+31/‑83)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,104,767	G→C	5.6%	I564M (ATC→ATG)	PP_5355 ←	sodium/proton antiporter
RA	6,111,188	G→C	6.4%	P108A (CCA→GCA)	PP_5361 ←	protein P47K
RA	6,111,977	T→A	8.7%	H118Q (CAT→CAA)	PP_5362 →	hypothetical protein
RA	6,122,012	T→A	5.1%	K46N (AAA→AAT) ‡	PP_5371 ←	rubredoxin/rubredoxin reductase
RA	6,122,014	T→A	5.7%	K46* (AAA→TAA) ‡	PP_5371 ←	rubredoxin/rubredoxin reductase
RA	6,122,021	C→T	5.3%	K43K (AAG→AAA)	PP_5371 ←	rubredoxin/rubredoxin reductase
RA	6,129,186	G→T	9.3%	intergenic (+48/+19)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,130,113	G→C	6.0%	A107G (GCC→GGC)	PP_5378 ←	metal‑binding protein
RA	6,152,626	A→G	5.1%	R69R (CGA→CGG)	PP_5738 →	hypothetical protein
RA	6,174,596	G→T	5.5%	R15S (CGC→AGC)	glmU ←	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,175,610	G→T	6.9%	I329I (ATC→ATA) ‡	atpD ←	ATP synthase subunit beta
RA	6,175,611	A→C	6.8%	I329S (ATC→AGC) ‡	atpD ←	ATP synthase subunit beta

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	15797 =	87 (1.470)	5 (0.090)	5/244	NT	5.9%	intergenic (+47/‑792)	gyrB/PP_5421	DNA gyrase subunit B/hypothetical protein
	?	NC_002947	15834 =	78 (1.380)					intergenic (+84/‑755)	gyrB/PP_5421	DNA gyrase subunit B/hypothetical protein
*	?	NC_002947	= 27515	59 (1.000)	3 (0.050)	3/240	NT	5.1%	intergenic (‑362/+84)	PP_0022/PP_0023	hypothetical protein/hypothetical protein
	?	NC_002947	= 27539	56 (1.010)					intergenic (‑386/+60)	PP_0022/PP_0023	hypothetical protein/hypothetical protein
*	?	NC_002947	= 50337	56 (0.950)	3 (0.050)	3/242	NT	5.4%	coding (313/1251 nt)	czcB‑I	cobalt‑zinc‑cadmium resistance protein
	?	NC_002947	= 50367	53 (0.950)					coding (283/1251 nt)	czcB‑I	cobalt‑zinc‑cadmium resistance protein
*	?	NC_002947	= 79426	72 (1.220)	4 (0.070)	3/240	NT	5.6%	coding (181/1098 nt)	PP_0069	rossmann fold nucleotide‑binding protein
	?	NC_002947	= 79477	67 (1.210)					coding (232/1098 nt)	PP_0069	rossmann fold nucleotide‑binding protein
*	?	NC_002947	= 86765	46 (0.780)	6 (0.120)	6/224	NT	13.2%	intergenic (‑48/+97)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	= 86824	39 (0.750)					intergenic (‑107/+38)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	92152 =	71 (1.200)	4 (0.070)	4/242	NT	6.1%	coding (228/810 nt)	trpA	tryptophan synthase subunit alpha
	?	NC_002947	92185 =	55 (0.980)					coding (195/810 nt)	trpA	tryptophan synthase subunit alpha
*	?	NC_002947	= 105259	45 (0.760)	5 (0.090)	5/240	NT	10.5%	coding (53/720 nt)	cynT	carbonic anhydrase
	?	NC_002947	= 105295	43 (0.780)					coding (89/720 nt)	cynT	carbonic anhydrase
*	?	NC_002947	= 106980	69 (1.170)	4 (0.070)	3/242	NT	5.6%	coding (847/1518 nt)	PP_0101	sulfate transporter
	?	NC_002947	= 107008	69 (1.240)					coding (875/1518 nt)	PP_0101	sulfate transporter
*	?	NC_002947	151249 =	45 (0.760)	4 (0.070)	4/248	NT	8.4%	coding (858/1026 nt)	PP_0143	membrane protein
	?	NC_002947	151284 =	44 (0.770)					coding (823/1026 nt)	PP_0143	membrane protein
*	?	NC_002947	= 157287	67 (1.130)	4 (0.070)	4/242	NT	5.7%	coding (439/1308 nt)	citN	citrate transporter
	?	NC_002947	= 157353	68 (1.220)					coding (373/1308 nt)	citN	citrate transporter
*	?	NC_002947	= 196941	NA (NA)	9 (0.160)	5/248	NT	7.5%	coding (2447/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 197221	114 (1.930)					coding (2727/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	204636 =	NA (NA)	5 (0.090)	3/244	NT	100%	coding (10142/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	207935 =	0 (0.000)					coding (13441/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	= 224928	60 (1.020)	5 (0.090)	5/238	NT	8.6%	intergenic (+15/+103)	PP_0172/PP_0173	ABC transporter permease/transcriptional factor‑like protein
	?	NC_002947	= 225023	51 (0.930)					intergenic (+110/+8)	PP_0172/PP_0173	ABC transporter permease/transcriptional factor‑like protein
*	?	NC_002947	= 226123	62 (1.050)	6 (0.110)	6/240	NT	8.8%	coding (349/819 nt)	PP_0174	hypothetical protein
	?	NC_002947	= 226140	67 (1.210)					coding (366/819 nt)	PP_0174	hypothetical protein
*	?	NC_002947	= 235329	51 (0.860)	5 (0.090)	5/236	NT	9.0%	intergenic (+26/+99)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	= 235390	54 (0.990)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
*	?	NC_002947	= 252712	71 (1.200)	4 (0.070)	4/248	NT	5.9%	coding (580/639 nt)	PP_5433	hypothetical protein
	?	NC_002947	= 252763	58 (1.010)					coding (631/639 nt)	PP_5433	hypothetical protein
*	?	NC_002947	346217 =	67 (1.130)	4 (0.070)	4/246	NT	6.2%	coding (1629/2247 nt)	PP_0287	hypothetical protein
	?	NC_002947	346248 =	57 (1.000)					coding (1598/2247 nt)	PP_0287	hypothetical protein
*	?	NC_002947	= 363543	46 (0.780)	7 (0.140)	7/222	NT	11.8%	intergenic (‑61/+106)	lcdH/PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme
	?	NC_002947	= 363602	65 (1.270)					intergenic (‑120/+47)	lcdH/PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme
*	?	NC_002947	= 363842	50 (0.850)	4 (0.070)	4/240	NT	7.5%	coding (692/885 nt)	PP_0303	dehydrocarnitine cleavage enzyme
	?	NC_002947	= 363902	52 (0.940)					coding (632/885 nt)	PP_0303	dehydrocarnitine cleavage enzyme
*	?	NC_002947	= 372927	52 (0.880)	3 (0.050)	3/240	NT	5.8%	coding (169/1953 nt)	dgcB	dimethylglycine dehydrogenase subunit
	?	NC_002947	= 372955	48 (0.870)					coding (197/1953 nt)	dgcB	dimethylglycine dehydrogenase subunit
*	?	NC_002947	= 376004	69 (1.170)	5 (0.090)	5/238	NT	7.4%	coding (51/771 nt)	PP_0313	electron transfer flavoprotein subunit beta
	?	NC_002947	= 376042	61 (1.110)					coding (89/771 nt)	PP_0313	electron transfer flavoprotein subunit beta
*	?	NC_002947	= 380130	51 (0.860)	4 (0.070)	4/242	NT	7.2%	coding (427/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit
	?	NC_002947	= 380163	55 (0.980)					coding (460/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit
*	?	NC_002947	= 380855	23 (0.390)	4 (0.080)	4/210	NT	14.6%	intergenic (+45/+64)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	= 380889	28 (0.580)					intergenic (+79/+30)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 419628	55 (0.930)	3 (0.050)	3/244	NT	5.1%	coding (680/753 nt)	PP_0346	heptose kinase WapQ
	?	NC_002947	= 419654	59 (1.050)					coding (706/753 nt)	PP_0346	heptose kinase WapQ
*	?	NC_002947	436840 =	67 (1.130)	4 (0.070)	4/242	NT	6.0%	coding (448/888 nt)	PP_0358	membrane protein
	?	NC_002947	436884 =	63 (1.130)					coding (404/888 nt)	PP_0358	membrane protein
*	?	NC_002947	438732 =	56 (0.950)	4 (0.070)	4/244	NT	6.4%	coding (458/765 nt)	modR	molybdate transport regulator
	?	NC_002947	438769 =	63 (1.120)					coding (421/765 nt)	modR	molybdate transport regulator
*	?	NC_002947	441840 =	43 (0.730)	4 (0.070)	4/242	NT	9.6%	coding (721/1173 nt)	bioF	8‑amino‑7‑oxononanoate synthase
	?	NC_002947	441900 =	35 (0.630)					coding (781/1173 nt)	bioF	8‑amino‑7‑oxononanoate synthase
*	?	NC_002947	= 464840	52 (0.880)	3 (0.050)	3/244	NT	5.6%	coding (257/1683 nt)	davB	lysine 2‑monooxygenase
	?	NC_002947	= 464867	51 (0.910)					coding (230/1683 nt)	davB	lysine 2‑monooxygenase
*	?	NC_002947	= 469491	91 (1.540)	7 (0.120)	4/250	NT	7.7%	coding (1466/3744 nt)	PP_0386	sensory box protein
	?	NC_002947	= 469534	78 (1.350)					coding (1423/3744 nt)	PP_0386	sensory box protein
*	?	NC_002947	482444 =	69 (1.170)	5 (0.090)	4/234	NT	8.0%	intergenic (‑84/+72)	PP_0396/yeaG	hypothetical protein/protein kinase
	?	NC_002947	482494 =	52 (0.960)					intergenic (‑134/+22)	PP_0396/yeaG	hypothetical protein/protein kinase
*	?	NC_002947	496732 =	57 (0.960)	4 (0.070)	4/242	NT	6.7%	coding (604/2388 nt)	PP_0409	two‑component system sensor histidine kinase
	?	NC_002947	496774 =	57 (1.020)					coding (646/2388 nt)	PP_0409	two‑component system sensor histidine kinase
*	?	NC_002947	= 499202	47 (0.800)	9 (0.160)	4/238	NT	16.0%	intergenic (+46/‑250)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
	?	NC_002947	= 499271	51 (0.930)					intergenic (+115/‑181)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	= 516851	70 (1.180)	4 (0.070)	4/236	NT	5.7%	coding (141/783 nt)	PP_0429	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 516873	67 (1.230)					coding (119/783 nt)	PP_0429	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	531496 =	74 (1.250)	5 (0.090)	3/246	NT	7.0%	coding (461/750 nt)	coaX	type III pantothenate kinase
	?	NC_002947	531549 =	61 (1.070)					coding (514/750 nt)	coaX	type III pantothenate kinase
*	?	NC_002947	= 535620	68 (1.150)	4 (0.070)	4/240	NT	6.1%	coding (55/696 nt)	rplA	50S ribosomal protein L1
	?	NC_002947	= 535662	59 (1.060)					coding (97/696 nt)	rplA	50S ribosomal protein L1
*	?	NC_002947	= 554927	60 (1.020)	4 (0.070)	4/242	NT	6.0%	coding (141/414 nt)	rplP	50S ribosomal protein L16
	?	NC_002947	= 554974	68 (1.220)					coding (188/414 nt)	rplP	50S ribosomal protein L16
*	?	NC_002947	571804 =	64 (1.080)	4 (0.070)	4/250	NT	5.8%	coding (1286/1425 nt)	PP_0486	GntR family transcriptional regulator
	?	NC_002947	571842 =	68 (1.180)					coding (1248/1425 nt)	PP_0486	GntR family transcriptional regulator
*	?	NC_002947	594771 =	40 (0.680)	6 (0.110)	4/234	NT	11.2%	intergenic (‑10/+117)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
	?	NC_002947	594856 =	59 (1.090)					intergenic (‑95/+32)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
*	?	NC_002947	596432 =	59 (1.000)	5 (0.090)	5/240	NT	7.4%	coding (432/711 nt)	PP_0507	ABC transporter ATP‑binding protein
	?	NC_002947	596498 =	69 (1.250)					coding (366/711 nt)	PP_0507	ABC transporter ATP‑binding protein
*	?	NC_002947	611504 =	NA (NA)	16 (0.290)	11/242	NT	NA	coding (401/966 nt)	PP_0526	transposase
	?	NC_002947	611533 =	NA (NA)					coding (430/966 nt)	PP_0526	transposase
*	?	NC_002947	611927 =	NA (NA)	6 (0.110)	6/238	NT	NA	coding (824/966 nt)	PP_0526	transposase
	?	NC_002947	611970 =	NA (NA)					coding (867/966 nt)	PP_0526	transposase
*	?	NC_002947	= 611985	NA (NA)	4 (0.070)	4/252	NT	NA	coding (882/966 nt)	PP_0526	transposase
	?	NC_002947	= 612012	NA (NA)					coding (909/966 nt)	PP_0526	transposase
*	?	NC_002947	620042 =	51 (0.860)	3 (0.050)	3/238	NT	7.1%	coding (648/693 nt)	PP_0534	transcriptional regulator PfeR
	?	NC_002947	620117 =	31 (0.560)					coding (573/693 nt)	PP_0534	transcriptional regulator PfeR
*	?	NC_002947	623511 =	67 (1.130)	5 (0.090)	5/246	NT	7.3%	coding (170/471 nt)	PP_0536	hypothetical protein
	?	NC_002947	623532 =	63 (1.110)					coding (149/471 nt)	PP_0536	hypothetical protein
*	?	NC_002947	637804 =	64 (1.080)	5 (0.090)	4/240	NT	7.5%	coding (56/288 nt)	PP_0549	lipoprotein
	?	NC_002947	637842 =	64 (1.160)					coding (94/288 nt)	PP_0549	lipoprotein
*	?	NC_002947	643874 =	53 (0.900)	3 (0.050)	3/248	NT	5.9%	coding (132/1023 nt)	acoB	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit beta
	?	NC_002947	643922 =	45 (0.790)					coding (84/1023 nt)	acoB	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit beta
*	?	NC_002947	688995 =	48 (0.810)	3 (0.050)	3/246	NT	5.3%	coding (41/714 nt)	PP_0590	ArsR family transcriptional regulator
	?	NC_002947	689058 =	62 (1.090)					coding (104/714 nt)	PP_0590	ArsR family transcriptional regulator
*	?	NC_002947	707669 =	53 (0.900)	3 (0.050)	3/238	NT	5.3%	coding (71/1539 nt)	murJ	lipid II flippase
	?	NC_002947	707709 =	57 (1.040)					coding (111/1539 nt)	murJ	lipid II flippase
*	?	NC_002947	= 726349	59 (1.000)	3 (0.060)	3/236	NT	5.1%	coding (405/765 nt)	PP_0620	GntR family transcriptional regulator
	?	NC_002947	= 726363	58 (1.060)					coding (391/765 nt)	PP_0620	GntR family transcriptional regulator
*	?	NC_002947	744921 =	NA (NA)	21 (0.360)	17/256	NT	33.9%	intergenic (‑586/+45)	PP_0636/PP_0637	cold shock DNA‑binding domain‑containing protein/transposase
	?	NC_002947	2217629 =	41 (0.690)					coding (546/828 nt)	PP_1958	hypothetical protein
*	?	NC_002947	= 746961	NA (NA)	13 (0.220)	12/256	NT	23.2%	intergenic (‑88/‑706)	PP_0638/PP_5448	transposase/hypothetical protein
	?	NC_002947	= 2217636	43 (0.730)					coding (539/828 nt)	PP_1958	hypothetical protein
*	?	NC_002947	= 754612	66 (1.120)	4 (0.070)	4/244	NT	5.8%	coding (133/183 nt)	PP_0643	hypothetical protein
	?	NC_002947	= 754638	68 (1.210)					coding (107/183 nt)	PP_0643	hypothetical protein
*	?	NC_002947	= 785539	50 (0.850)	4 (0.070)	3/244	NT	7.2%	coding (387/3831 nt)	PP_0672	sensory box protein
	?	NC_002947	= 785639	55 (0.980)					coding (287/3831 nt)	PP_0672	sensory box protein
*	?	NC_002947	785785 =	52 (0.880)	4 (0.070)	4/244	NT	7.3%	coding (141/3831 nt)	PP_0672	sensory box protein
	?	NC_002947	785818 =	52 (0.920)					coding (108/3831 nt)	PP_0672	sensory box protein
*	?	NC_002947	808489 =	62 (1.050)	3 (0.050)	3/246	NT	5.1%	coding (869/1335 nt)	PP_0695	hypothetical protein
	?	NC_002947	808534 =	53 (0.930)					coding (824/1335 nt)	PP_0695	hypothetical protein
*	?	NC_002947	= 811460	44 (0.740)	3 (0.050)	3/244	NT	6.1%	coding (792/918 nt)	PP_0698	LysR family transcriptional regulator
	?	NC_002947	= 811486	51 (0.910)					coding (766/918 nt)	PP_0698	LysR family transcriptional regulator
*	?	NC_002947	825468 =	55 (0.930)	5 (0.090)	5/240	NT	9.3%	coding (649/1500 nt)	PP_0709	NCS1 family transporter
	?	NC_002947	825518 =	46 (0.830)					coding (599/1500 nt)	PP_0709	NCS1 family transporter
*	?	NC_002947	827690 =	68 (1.150)	4 (0.070)	4/248	NT	5.6%	coding (154/816 nt)	ppkB	polyphosphate kinase
	?	NC_002947	827729 =	69 (1.210)					coding (193/816 nt)	ppkB	polyphosphate kinase
*	?	NC_002947	= 831591	72 (1.220)	4 (0.070)	4/250	NT	5.3%	coding (865/1515 nt)	PP_0715	outer membrane efflux protein
	?	NC_002947	= 831649	74 (1.280)					coding (923/1515 nt)	PP_0715	outer membrane efflux protein
*	?	NC_002947	= 851300	64 (1.080)	5 (0.090)	5/244	NT	7.6%	coding (79/1278 nt)	hemA	glutamyl‑tRNA reductase
	?	NC_002947	= 851322	61 (1.080)					coding (101/1278 nt)	hemA	glutamyl‑tRNA reductase
*	?	NC_002947	877664 =	80 (1.350)	5 (0.090)	4/244	NT	5.8%	coding (515/966 nt)	hprA	glycerate dehydrogenase
	?	NC_002947	877716 =	85 (1.510)					coding (463/966 nt)	hprA	glycerate dehydrogenase
*	?	NC_002947	893783 =	51 (0.860)	6 (0.110)	4/236	NT	11.8%	coding (266/303 nt)	PP_0775	hypothetical protein
	?	NC_002947	893872 =	43 (0.790)					coding (177/303 nt)	PP_0775	hypothetical protein
*	?	NC_002947	905387 =	58 (0.980)	3 (0.050)	3/238	NT	5.3%	coding (1646/2160 nt)	PP_0788	hypothetical protein
	?	NC_002947	905425 =	53 (0.960)					coding (1684/2160 nt)	PP_0788	hypothetical protein
*	?	NC_002947	913904 =	62 (1.050)	4 (0.070)	4/248	NT	6.3%	coding (615/1743 nt)	fruA	PTS fructose transporter subunit IIBC
	?	NC_002947	913941 =	58 (1.010)					coding (652/1743 nt)	fruA	PTS fructose transporter subunit IIBC
*	?	NC_002947	933472 =	63 (1.070)	3 (0.050)	3/242	NT	5.3%	coding (12150/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	933532 =	48 (0.860)					coding (12090/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	943231 =	67 (1.130)	4 (0.070)	4/242	NT	6.6%	coding (2391/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	943312 =	49 (0.880)					coding (2310/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	973460 =	41 (0.690)	4 (0.070)	4/236	NT	9.8%	coding (1752/1863 nt)	secD	protein translocase subunit SecD
	?	NC_002947	973515 =	36 (0.660)					coding (1807/1863 nt)	secD	protein translocase subunit SecD
*	?	NC_002947	995360 =	52 (0.880)	4 (0.070)	4/244	NT	6.9%	coding (2236/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
	?	NC_002947	995411 =	59 (1.050)					coding (2185/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
*	?	NC_002947	1005210 =	65 (1.100)	3 (0.060)	3/236	NT	5.1%	coding (140/2430 nt)	PP_0867	FecA‑like outer membrane receptor
	?	NC_002947	1005262 =	52 (0.950)					coding (192/2430 nt)	PP_0867	FecA‑like outer membrane receptor
*	?	NC_002947	1036779 =	58 (0.980)	3 (0.050)	3/242	NT	5.3%	coding (484/591 nt)	PP_0895	hypothetical protein
	?	NC_002947	1036839 =	52 (0.930)					coding (544/591 nt)	PP_0895	hypothetical protein
*	?	NC_002947	1037771 =	46 (0.780)	3 (0.060)	3/210	NT	7.9%	intergenic (+16/+100)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
	?	NC_002947	1037849 =	32 (0.660)					intergenic (+94/+22)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
*	?	NC_002947	= 1066521	56 (0.950)	4 (0.070)	4/246	NT	6.7%	coding (79/756 nt)	PP_0924	hypothetical protein
	?	NC_002947	= 1066548	57 (1.000)					coding (52/756 nt)	PP_0924	hypothetical protein
*	?	NC_002947	1120665 =	63 (1.070)	3 (0.050)	3/248	NT	5.0%	coding (106/1116 nt)	PP_0982	YjgP/YjgQ family permease
	?	NC_002947	1120698 =	52 (0.910)					coding (139/1116 nt)	PP_0982	YjgP/YjgQ family permease
*	?	NC_002947	1126593 =	34 (0.580)	7 (0.120)	7/248	NT	20.0%	intergenic (‑47/+102)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
	?	NC_002947	1126650 =	23 (0.400)					intergenic (‑104/+45)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
*	?	NC_002947	1155724 =	48 (0.810)	3 (0.050)	3/246	NT	6.2%	coding (882/1455 nt)	PP_1013	sensor histidine kinase
	?	NC_002947	1155749 =	45 (0.790)					coding (907/1455 nt)	PP_1013	sensor histidine kinase
*	?	NC_002947	= 1155780	51 (0.860)	3 (0.050)	3/244	NT	5.8%	coding (938/1455 nt)	PP_1013	sensor histidine kinase
	?	NC_002947	= 1155828	48 (0.850)					coding (986/1455 nt)	PP_1013	sensor histidine kinase
*	?	NC_002947	1162090 =	62 (1.050)	4 (0.070)	4/248	NT	6.4%	coding (1053/1155 nt)	gtsD	mannose/glucose ABC transporter ATP binding protein
	?	NC_002947	1162142 =	56 (0.980)					coding (1105/1155 nt)	gtsD	mannose/glucose ABC transporter ATP binding protein
*	?	NC_002947	= 1188365	59 (1.000)	3 (0.050)	3/238	NT	5.1%	coding (3570/3900 nt)	purL	phosphoribosylformylglycinamidine synthase
	?	NC_002947	= 1188401	57 (1.040)					coding (3606/3900 nt)	purL	phosphoribosylformylglycinamidine synthase
*	?	NC_002947	= 1204282	72 (1.220)	4 (0.070)	4/246	NT	5.9%	coding (625/645 nt)	gspN	type II secretion pathway protein GspN
	?	NC_002947	= 1204318	59 (1.040)					intergenic (+16/+144)	gspN/PP_1056	type II secretion pathway protein GspN/iron‑chelator utilization protein
*	?	NC_002947	1243942 =	54 (0.910)	3 (0.050)	3/246	NT	5.5%	coding (543/675 nt)	rnt	ribonuclease T
	?	NC_002947	1243990 =	52 (0.920)					coding (495/675 nt)	rnt	ribonuclease T
*	?	NC_002947	1257820 =	64 (1.080)	3 (0.060)	3/236	NT	5.5%	coding (363/567 nt)	dcd	deoxycytidine triphosphate deaminase
	?	NC_002947	1257866 =	45 (0.830)					coding (409/567 nt)	dcd	deoxycytidine triphosphate deaminase
*	?	NC_002947	= 1267894	67 (1.130)	4 (0.070)	4/250	NT	6.0%	coding (94/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
	?	NC_002947	= 1267936	59 (1.020)					coding (52/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
*	?	NC_002947	1272956 =	67 (1.130)	4 (0.070)	4/244	NT	6.5%	coding (650/903 nt)	PP_1113	pyridoxal‑phosphate dependent enzyme family protein
	?	NC_002947	1272996 =	52 (0.920)					coding (690/903 nt)	PP_1113	pyridoxal‑phosphate dependent enzyme family protein
*	?	NC_002947	1288899 =	63 (1.070)	4 (0.070)	4/242	NT	6.6%	coding (172/2349 nt)	PP_1126	hydrolase
	?	NC_002947	1288937 =	53 (0.950)					coding (210/2349 nt)	PP_1126	hydrolase
*	?	NC_002947	1294939 =	57 (0.960)	4 (0.070)	4/244	NT	7.1%	coding (420/465 nt)	slyB	outer membrane lipoprotein
	?	NC_002947	1294983 =	50 (0.890)					coding (464/465 nt)	slyB	outer membrane lipoprotein
*	?	NC_002947	1295253 =	37 (0.630)	3 (0.050)	3/250	NT	6.1%	coding (995/1194 nt)	nhaA‑I	Na(+)/H(+) antiporter NhaA
	?	NC_002947	1295292 =	57 (0.990)					coding (956/1194 nt)	nhaA‑I	Na(+)/H(+) antiporter NhaA
*	?	NC_002947	1296784 =	NA (NA)	4 (0.070)	4/242	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296822 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1296790	NA (NA)	4 (0.070)	4/242	NT	NA	intergenic (‑543/‑23)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	= 1296814	NA (NA)					coding (2/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1297730	NA (NA)	3 (0.050)	3/242	NT	NA	coding (918/1329 nt)	PP_1133	transposase
	?	NC_002947	= 1297772	NA (NA)					coding (960/1329 nt)	PP_1133	transposase
*	?	NC_002947	1298266 =	NA (NA)	7 (0.120)	6/248	NT	NA	intergenic (+125/+304)	PP_1133/PP_1134	transposase/hypothetical protein
	?	NC_002947	1298312 =	NA (NA)					intergenic (+171/+258)	PP_1133/PP_1134	transposase/hypothetical protein
*	?	NC_002947	1344312 =	50 (0.850)	4 (0.070)	4/246	NT	8.3%	coding (806/972 nt)	dctP	TRAP dicarboxylate transporter subunit DctP
	?	NC_002947	1344341 =	40 (0.700)					coding (777/972 nt)	dctP	TRAP dicarboxylate transporter subunit DctP
*	?	NC_002947	= 1357142	58 (0.980)	3 (0.050)	3/244	NT	5.0%	coding (323/1608 nt)	PP_1182	sensor histidine kinase
	?	NC_002947	= 1357169	58 (1.030)					coding (350/1608 nt)	PP_1182	sensor histidine kinase
*	?	NC_002947	= 1362407	65 (1.100)	4 (0.070)	3/240	NT	6.2%	coding (797/1347 nt)	phoQ	sensor protein
	?	NC_002947	= 1362436	61 (1.100)					coding (826/1347 nt)	phoQ	sensor protein
*	?	NC_002947	1371732 =	50 (0.850)	5 (0.090)	4/234	NT	9.7%	intergenic (+5/+67)	PP_1196/rimO	hypothetical protein/ribosomal protein S12 methylthiotransferase
	?	NC_002947	1371783 =	47 (0.870)					intergenic (+56/+16)	PP_1196/rimO	hypothetical protein/ribosomal protein S12 methylthiotransferase
*	?	NC_002947	1380487 =	67 (1.130)	7 (0.130)	7/232	NT	10.8%	intergenic (‑213/+49)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
	?	NC_002947	1380526 =	55 (1.030)					intergenic (‑252/+10)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
*	?	NC_002947	1388965 =	64 (1.080)	5 (0.090)	5/246	NT	8.1%	coding (195/474 nt)	dps	DNA‑binding stress protein
	?	NC_002947	1389041 =	52 (0.920)					coding (271/474 nt)	dps	DNA‑binding stress protein
*	?	NC_002947	1400627 =	59 (1.000)	4 (0.070)	4/242	NT	7.0%	coding (597/807 nt)	ybgF	TolQRA transport system periplasmic protein
	?	NC_002947	1400665 =	50 (0.890)					coding (635/807 nt)	ybgF	TolQRA transport system periplasmic protein
*	?	NC_002947	1400763 =	62 (1.050)	4 (0.070)	4/248	NT	5.5%	coding (733/807 nt)	ybgF	TolQRA transport system periplasmic protein
	?	NC_002947	1400832 =	78 (1.360)					coding (802/807 nt)	ybgF	TolQRA transport system periplasmic protein
*	?	NC_002947	1410031 =	65 (1.100)	4 (0.070)	4/246	NT	6.5%	coding (701/1059 nt)	nadA	quinolinate synthase iron‑sulfur cluster subunit
	?	NC_002947	1410076 =	53 (0.930)					coding (746/1059 nt)	nadA	quinolinate synthase iron‑sulfur cluster subunit
*	?	NC_002947	= 1426792	NA (NA)	5 (0.090)	4/248	NT	NA	coding (690/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426869	NA (NA)					coding (767/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	1431709 =	51 (0.860)	3 (0.050)	3/244	NT	5.7%	coding (163/336 nt)	PP_1253	ArsR family transcriptional regulator
	?	NC_002947	1431746 =	51 (0.910)					coding (126/336 nt)	PP_1253	ArsR family transcriptional regulator
*	?	NC_002947	= 1458470	56 (0.950)	3 (0.050)	3/238	NT	5.7%	coding (1128/1458 nt)	algA	mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
	?	NC_002947	= 1458516	48 (0.870)					coding (1082/1458 nt)	algA	mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
*	?	NC_002947	= 1499458	32 (0.540)	12 (0.210)	8/252	NT	26.2%	intergenic (+35/‑129)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 1499495	36 (0.620)					intergenic (+72/‑92)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	= 1572594	57 (0.960)	3 (0.050)	3/240	NT	5.7%	coding (716/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase
	?	NC_002947	= 1572655	45 (0.810)					coding (777/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase
*	?	NC_002947	1574617 =	49 (0.830)	3 (0.050)	3/242	NT	5.7%	coding (398/525 nt)	pcaP	porin
	?	NC_002947	1574656 =	53 (0.950)					coding (359/525 nt)	pcaP	porin
*	?	NC_002947	= 1574654	56 (0.950)	4 (0.070)	4/246	NT	7.0%	coding (361/525 nt)	pcaP	porin
	?	NC_002947	= 1574665	52 (0.920)					coding (350/525 nt)	pcaP	porin
*	?	NC_002947	1602808 =	63 (1.070)	3 (0.050)	3/242	NT	5.2%	coding (655/1215 nt)	PP_5469	SAM‑dependent methyltransferase
	?	NC_002947	1602877 =	50 (0.890)					coding (724/1215 nt)	PP_5469	SAM‑dependent methyltransferase
*	?	NC_002947	1614536 =	40 (0.680)	4 (0.070)	4/244	NT	10.2%	coding (70/1683 nt)	ushA	5'‑nucleotidase/2',3'‑cyclic phosphodiesterase
	?	NC_002947	1614568 =	32 (0.570)					coding (38/1683 nt)	ushA	5'‑nucleotidase/2',3'‑cyclic phosphodiesterase
*	?	NC_002947	= 1617138	74 (1.250)	4 (0.070)	4/240	NT	5.7%	coding (121/1515 nt)	PP_1416	tricarboxylate transport protein TctA
	?	NC_002947	= 1617169	63 (1.140)					coding (90/1515 nt)	PP_1416	tricarboxylate transport protein TctA
*	?	NC_002947	= 1619440	71 (1.200)	5 (0.090)	4/246	NT	7.1%	coding (795/1290 nt)	opdH	tricarboxylate‑specific outer membrane porin
	?	NC_002947	= 1619474	63 (1.110)					coding (761/1290 nt)	opdH	tricarboxylate‑specific outer membrane porin
*	?	NC_002947	1642047 =	53 (0.900)	3 (0.050)	3/248	NT	5.6%	coding (126/393 nt)	PP_1442	hypothetical protein
	?	NC_002947	1642092 =	49 (0.860)					coding (81/393 nt)	PP_1442	hypothetical protein
*	?	NC_002947	1647240 =	71 (1.200)	6 (0.100)	5/248	NT	7.9%	coding (117/2412 nt)	gcd	quinoprotein glucose dehydrogenase
	?	NC_002947	1647279 =	72 (1.260)					coding (78/2412 nt)	gcd	quinoprotein glucose dehydrogenase
*	?	NC_002947	= 1666797	43 (0.730)	4 (0.080)	4/224	NT	9.0%	intergenic (‑69/‑202)	PP_1460/ffh	membrane protein/signal recognition particle GTPase subunit
	?	NC_002947	= 1666826	43 (0.830)					intergenic (‑98/‑173)	PP_1460/ffh	membrane protein/signal recognition particle GTPase subunit
*	?	NC_002947	1692423 =	61 (1.030)	4 (0.070)	4/242	NT	6.1%	coding (520/1623 nt)	PP_1488	methyl‑accepting chemotaxis transducer
	?	NC_002947	1692516 =	65 (1.160)					coding (613/1623 nt)	PP_1488	methyl‑accepting chemotaxis transducer
*	?	NC_002947	1750260 =	84 (1.420)	6 (0.110)	5/230	NT	7.5%	intergenic (‑25/‑64)	PP_1549/PP_1550	Cro/CI family transcriptional regulator/Cro/CI family transcriptional regulator
	?	NC_002947	1750297 =	73 (1.370)					intergenic (‑62/‑27)	PP_1549/PP_1550	Cro/CI family transcriptional regulator/Cro/CI family transcriptional regulator
*	?	NC_002947	= 1768537	64 (1.080)	6 (0.110)	4/242	NT	8.3%	coding (138/480 nt)	PP_1578	hypothetical protein
	?	NC_002947	= 1768606	72 (1.290)					coding (207/480 nt)	PP_1578	hypothetical protein
*	?	NC_002947	= 1782927	45 (0.760)	5 (0.090)	4/238	NT	11.0%	coding (1150/2703 nt)	glnD	uridylyltransferase
	?	NC_002947	= 1782979	39 (0.710)					coding (1098/2703 nt)	glnD	uridylyltransferase
*	?	NC_002947	= 1799841	72 (1.220)	5 (0.090)	5/242	NT	7.5%	intergenic (+11/‑176)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
	?	NC_002947	= 1799947	55 (0.980)					intergenic (+117/‑70)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
*	?	NC_002947	= 1809739	67 (1.130)	6 (0.110)	6/240	NT	8.9%	coding (790/1290 nt)	eno	enolase
	?	NC_002947	= 1809761	60 (1.080)					coding (812/1290 nt)	eno	enolase
*	?	NC_002947	1811415 =	55 (0.930)	3 (0.060)	3/210	NT	8.0%	intergenic (+22/+106)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator
	?	NC_002947	1811495 =	24 (0.500)					intergenic (+102/+26)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator
*	?	NC_002947	= 1821235	NA (NA)	8 (0.140)	4/256	NT	NA	coding (998/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2070688	NA (NA)					coding (1062/1422 nt)	PP_1846	group II intron‑encoding maturase
*	?	NC_002947	1838334 =	74 (1.250)	5 (0.090)	4/236	NT	7.9%	coding (237/414 nt)	PP_1643	membrane protein
	?	NC_002947	1838373 =	49 (0.900)					coding (198/414 nt)	PP_1643	membrane protein
*	?	NC_002947	= 1845868	53 (0.900)	3 (0.050)	3/244	NT	5.1%	coding (159/1377 nt)	pfeS‑II	histidine kinase
	?	NC_002947	= 1845921	62 (1.100)					coding (212/1377 nt)	pfeS‑II	histidine kinase
*	?	NC_002947	1850759 =	59 (1.000)	5 (0.090)	5/238	NT	8.0%	coding (1300/1359 nt)	rlmD	23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD
	?	NC_002947	1850792 =	60 (1.090)					coding (1333/1359 nt)	rlmD	23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD
*	?	NC_002947	1855432 =	69 (1.170)	3 (0.060)	3/232	NT	5.0%	coding (444/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	1855485 =	51 (0.950)					coding (497/1341 nt)	PP_1659	hypothetical protein
*	?	NC_002947	= 1869164	55 (0.930)	4 (0.070)	4/246	NT	7.3%	coding (1278/1296 nt)	cobB	cobyrinate a,c‑diamide synthase
	?	NC_002947	= 1869201	49 (0.860)					coding (23/651 nt)	bluB	5,6‑dimethylbenzimidazole synthase
*	?	NC_002947	= 1874677	73 (1.240)	4 (0.070)	4/248	NT	5.3%	coding (988/1056 nt)	cobU	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
	?	NC_002947	= 1874702	73 (1.280)					coding (1013/1056 nt)	cobU	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
*	?	NC_002947	= 1889997	46 (0.780)	4 (0.070)	4/240	NT	8.8%	coding (276/3480 nt)	PP_1695	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 1890029	40 (0.720)					coding (244/3480 nt)	PP_1695	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	1890949 =	79 (1.340)	5 (0.090)	5/244	NT	6.0%	coding (629/1179 nt)	PP_1696	membrane protein
	?	NC_002947	1891003 =	82 (1.460)					coding (575/1179 nt)	PP_1696	membrane protein
*	?	NC_002947	1904921 =	40 (0.680)	4 (0.070)	4/242	NT	10.8%	coding (1176/2553 nt)	nirB	nitrite reductase large subunit
	?	NC_002947	1905001 =	28 (0.500)					coding (1256/2553 nt)	nirB	nitrite reductase large subunit
*	?	NC_002947	= 1967177	31 (0.520)	6 (0.140)	7/190	NT	17.4%	intergenic (+47/+72)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	= 1967207	34 (0.780)					intergenic (+77/+42)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	1968031 =	51 (0.860)	3 (0.060)	3/230	NT	5.8%	intergenic (‑42/+116)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
	?	NC_002947	1968116 =	52 (0.980)					intergenic (‑127/+31)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
*	?	NC_002947	2012685 =	64 (1.080)	4 (0.070)	4/248	NT	7.0%	coding (1337/2589 nt)	PP_1793	group 2 family glycosyl transferase
	?	NC_002947	2012743 =	45 (0.790)					coding (1279/2589 nt)	PP_1793	group 2 family glycosyl transferase
*	?	NC_002947	2023590 =	71 (1.200)	4 (0.070)	3/248	NT	5.9%	coding (622/897 nt)	rmd	oxidoreductase Rmd
	?	NC_002947	2023633 =	59 (1.030)					coding (665/897 nt)	rmd	oxidoreductase Rmd
*	?	NC_002947	2032810 =	NA (NA)	5 (0.090)	5/244	NT	20.0%	coding (291/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	2032835 =	21 (0.360)					coding (316/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
*	?	NC_002947	= 2034207	50 (0.850)	3 (0.050)	3/244	NT	6.3%	intergenic (+23/+1418)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein
	?	NC_002947	= 2034235	42 (0.750)					intergenic (+51/+1390)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein
*	?	NC_002947	= 2050595	19 (0.320)	3 (0.070)	3/182	NT	14.1%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050631	23 (0.550)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	= 2054923	51 (0.860)	4 (0.070)	4/242	NT	8.4%	coding (64/1092 nt)	aroC	chorismate synthase
	?	NC_002947	= 2054952	39 (0.700)					coding (93/1092 nt)	aroC	chorismate synthase
*	?	NC_002947	= 2071179	51 (0.860)	4 (0.080)	4/220	NT	7.8%	intergenic (+131/+96)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
	?	NC_002947	= 2071216	51 (1.000)					intergenic (+168/+59)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
*	?	NC_002947	2086080 =	NA (NA)	3 (0.050)	3/246	NT	NA	coding (195/1302 nt)	PP_1865	transposase
	?	NC_002947	2086120 =	NA (NA)					coding (235/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2086250	NA (NA)	8 (0.140)	6/240	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086296	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2092024	53 (0.900)	3 (0.050)	3/246	NT	6.1%	coding (1350/1680 nt)	deaD	ATP‑dependent DEAD‑box RNA helicase DeaD
	?	NC_002947	= 2092057	42 (0.740)					coding (1383/1680 nt)	deaD	ATP‑dependent DEAD‑box RNA helicase DeaD
*	?	NC_002947	2099960 =	35 (0.590)	5 (0.100)	5/210	NT	15.9%	intergenic (‑71/‑134)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2100055 =	24 (0.500)					intergenic (‑166/‑39)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	= 2110129	84 (1.420)	5 (0.090)	4/246	NT	6.0%	coding (4157/4899 nt)	PP_1882	membrane protein
	?	NC_002947	= 2110150	77 (1.360)					coding (4136/4899 nt)	PP_1882	membrane protein
*	?	NC_002947	2122425 =	72 (1.220)	5 (0.090)	5/250	NT	6.7%	coding (1253/2928 nt)	PP_1886	hypothetical protein
	?	NC_002947	2122462 =	68 (1.180)					coding (1290/2928 nt)	PP_1886	hypothetical protein
*	?	NC_002947	= 2122773	54 (0.910)	6 (0.110)	4/246	NT	10.3%	coding (1601/2928 nt)	PP_1886	hypothetical protein
	?	NC_002947	= 2122831	53 (0.930)					coding (1659/2928 nt)	PP_1886	hypothetical protein
*	?	NC_002947	2127698 =	66 (1.120)	5 (0.090)	4/238	NT	6.9%	coding (3069/3873 nt)	PP_1887	hypothetical protein
	?	NC_002947	2127748 =	74 (1.350)					coding (3119/3873 nt)	PP_1887	hypothetical protein
*	?	NC_002947	2202174 =	36 (0.610)	5 (0.090)	5/238	NT	12.0%	intergenic (+31/‑150)	PP_1946/PP_1947	short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein
	?	NC_002947	2202214 =	40 (0.730)					intergenic (+71/‑110)	PP_1946/PP_1947	short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein
*	?	NC_002947	2229000 =	53 (0.900)	3 (0.050)	3/238	NT	6.2%	coding (136/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	2229067 =	41 (0.750)					coding (203/783 nt)	ycfH	tRNA D‑aminoacylase
*	?	NC_002947	= 2236692	78 (1.320)	6 (0.110)	6/246	NT	7.3%	coding (1803/2016 nt)	uvrB	uvrABC excinuclease protein B
	?	NC_002947	= 2236715	78 (1.370)					coding (1826/2016 nt)	uvrB	uvrABC excinuclease protein B
*	?	NC_002947	2236919 =	36 (0.610)	4 (0.080)	3/224	NT	12.2%	intergenic (+14/+114)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
	?	NC_002947	2237010 =	26 (0.500)					intergenic (+105/+23)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
*	?	NC_002947	= 2245538	65 (1.100)	4 (0.070)	4/238	NT	6.3%	intergenic (+112/‑224)	dusC/ibpA	tRNA‑dihydrouridine synthase DusC/small heat shock protein IbpA
	?	NC_002947	= 2245614	58 (1.060)					intergenic (+188/‑148)	dusC/ibpA	tRNA‑dihydrouridine synthase DusC/small heat shock protein IbpA
*	?	NC_002947	= 2256677	0 (0.000)	7 (0.120)	5/250	NT	100%	coding (34/1302 nt)	PP_1990	transposase
	?	NC_002947	= 2413151	NA (NA)					intergenic (+415/‑6)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
*	?	NC_002947	2295836 =	42 (0.710)	5 (0.090)	5/240	NT	8.0%	intergenic (+82/+51)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	4282152 =	75 (1.350)					coding (1078/1089 nt)	PP_3753	AraC family transcriptional regulator
*	?	NC_002947	2301453 =	0 (0.000)	49 (0.850)	41/250	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	49 (0.840)	44/252	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 2303118	44 (0.740)	4 (0.070)	4/236	NT	7.5%	intergenic (‑203/+92)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
	?	NC_002947	= 2303178	58 (1.060)					intergenic (‑263/+32)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
*	?	NC_002947	= 2328577	55 (0.930)	3 (0.060)	3/236	NT	5.3%	coding (165/1239 nt)	PP_2047	3‑hydroxyacyl‑CoA dehydrogenase family protein
	?	NC_002947	= 2328606	57 (1.050)					coding (194/1239 nt)	PP_2047	3‑hydroxyacyl‑CoA dehydrogenase family protein
*	?	NC_002947	2329127 =	50 (0.850)	4 (0.070)	4/238	NT	7.5%	coding (715/1239 nt)	PP_2047	3‑hydroxyacyl‑CoA dehydrogenase family protein
	?	NC_002947	2329196 =	52 (0.950)					coding (784/1239 nt)	PP_2047	3‑hydroxyacyl‑CoA dehydrogenase family protein
*	?	NC_002947	2334268 =	52 (0.880)	3 (0.050)	3/242	NT	5.6%	intergenic (+15/+65)	fadA/PP_2052	3‑ketoacyl‑CoA thiolase/bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
	?	NC_002947	2334333 =	52 (0.930)					coding (2124/2124 nt)	PP_2052	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
*	?	NC_002947	2352954 =	41 (0.690)	3 (0.050)	3/240	NT	6.9%	coding (311/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter
	?	NC_002947	2352998 =	43 (0.780)					coding (267/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter
*	?	NC_002947	2354027 =	51 (0.860)	3 (0.050)	3/242	NT	5.3%	coding (505/1278 nt)	PP_2068	multidrug MFS transporter membrane fusion protein
	?	NC_002947	2354077 =	60 (1.070)					coding (455/1278 nt)	PP_2068	multidrug MFS transporter membrane fusion protein
*	?	NC_002947	= 2354034	52 (0.880)	4 (0.070)	4/248	NT	6.8%	coding (498/1278 nt)	PP_2068	multidrug MFS transporter membrane fusion protein
	?	NC_002947	= 2354078	60 (1.050)					coding (454/1278 nt)	PP_2068	multidrug MFS transporter membrane fusion protein
*	?	NC_002947	= 2356339	63 (1.070)	4 (0.070)	4/246	NT	6.1%	coding (483/711 nt)	PP_2070	AraC family transcriptional regulator
	?	NC_002947	= 2356360	63 (1.110)					coding (462/711 nt)	PP_2070	AraC family transcriptional regulator
*	?	NC_002947	= 2357793	78 (1.320)	4 (0.070)	4/242	NT	5.3%	coding (518/825 nt)	PP_2072	AraC family transcriptional regulator
	?	NC_002947	= 2357821	68 (1.220)					coding (490/825 nt)	PP_2072	AraC family transcriptional regulator
*	?	NC_002947	= 2361888	45 (0.760)	3 (0.050)	3/240	NT	7.1%	coding (1989/2724 nt)	PP_2076	hypothetical protein
	?	NC_002947	= 2361912	36 (0.650)					coding (1965/2724 nt)	PP_2076	hypothetical protein
*	?	NC_002947	2380251 =	52 (0.880)	4 (0.070)	4/240	NT	7.9%	intergenic (+26/‑86)	PP_2088/oprF	RNA polymerase sigma factor SigX/porin F
	?	NC_002947	2380275 =	44 (0.790)					intergenic (+50/‑62)	PP_2088/oprF	RNA polymerase sigma factor SigX/porin F
*	?	NC_002947	= 2397411	51 (0.860)	3 (0.050)	3/242	NT	5.7%	coding (2246/3636 nt)	PP_2100	two‑component system sensor protein
	?	NC_002947	= 2397434	51 (0.910)					coding (2223/3636 nt)	PP_2100	two‑component system sensor protein
*	?	NC_002947	= 2423612	61 (1.030)	5 (0.090)	4/250	NT	7.4%	coding (564/1248 nt)	PP_2124	glycosyl transferase
	?	NC_002947	= 2423660	65 (1.130)					coding (516/1248 nt)	PP_2124	glycosyl transferase
*	?	NC_002947	2434743 =	45 (0.760)	4 (0.070)	4/242	NT	8.4%	coding (55/465 nt)	PP_2133	hypothetical protein
	?	NC_002947	2434791 =	45 (0.810)					coding (103/465 nt)	PP_2133	hypothetical protein
*	?	NC_002947	= 2438704	52 (0.880)	3 (0.050)	3/252	NT	5.3%	coding (1624/2148 nt)	fadB	enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
	?	NC_002947	= 2438735	55 (0.950)					coding (1655/2148 nt)	fadB	enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
*	?	NC_002947	= 2447276	38 (0.640)	3 (0.050)	3/244	NT	6.8%	coding (665/1011 nt)	nagZ	beta‑N‑acetylglucosaminidase
	?	NC_002947	= 2447298	46 (0.820)					coding (687/1011 nt)	nagZ	beta‑N‑acetylglucosaminidase
*	?	NC_002947	= 2448745	57 (0.960)	4 (0.070)	4/242	NT	7.1%	coding (2338/3318 nt)	PP_2146	SNF2/RAD54 family helicase
	?	NC_002947	= 2448768	51 (0.910)					coding (2315/3318 nt)	PP_2146	SNF2/RAD54 family helicase
*	?	NC_002947	2464934 =	42 (0.710)	6 (0.100)	6/248	NT	12.5%	coding (704/1353 nt)	PP_2157	sensor histidine kinase
	?	NC_002947	2464973 =	43 (0.750)					coding (665/1353 nt)	PP_2157	sensor histidine kinase
*	?	NC_002947	2466698 =	69 (1.170)	4 (0.070)	4/246	NT	5.7%	coding (184/528 nt)	PP_2159	plastocyanin/azurin family copper‑binding protein
	?	NC_002947	2466737 =	65 (1.140)					coding (223/528 nt)	PP_2159	plastocyanin/azurin family copper‑binding protein
*	?	NC_002947	2497418 =	62 (1.050)	6 (0.110)	6/240	NT	10.0%	coding (644/1125 nt)	PP_2192	ECF family RNA polymerase sigma‑70 factor/transmembrane sensor protein
	?	NC_002947	2497457 =	50 (0.900)					coding (683/1125 nt)	PP_2192	ECF family RNA polymerase sigma‑70 factor/transmembrane sensor protein
*	?	NC_002947	= 2547986	36 (0.610)	4 (0.070)	4/242	NT	9.4%	coding (216/888 nt)	rhtA	threonine/homoserine exporter
	?	NC_002947	= 2548018	43 (0.770)					coding (184/888 nt)	rhtA	threonine/homoserine exporter
*	?	NC_002947	2561071 =	57 (0.960)	3 (0.050)	3/248	NT	5.5%	coding (360/786 nt)	PP_2244	TauE‑like transmembrane protein
	?	NC_002947	2561107 =	47 (0.820)					coding (324/786 nt)	PP_2244	TauE‑like transmembrane protein
*	?	NC_002947	2584703 =	63 (1.070)	4 (0.070)	4/248	NT	6.4%	coding (792/855 nt)	folD‑II	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
	?	NC_002947	2584744 =	55 (0.960)					coding (751/855 nt)	folD‑II	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
*	?	NC_002947	= 2617571	59 (1.000)	4 (0.070)	4/244	NT	6.5%	coding (98/504 nt)	PP_2289	hypothetical protein
	?	NC_002947	= 2617591	59 (1.050)					coding (118/504 nt)	PP_2289	hypothetical protein
*	?	NC_002947	2618298 =	57 (0.960)	5 (0.090)	4/240	NT	9.4%	coding (52/288 nt)	PP_2291	hypothetical protein
	?	NC_002947	2618355 =	43 (0.780)					coding (109/288 nt)	PP_2291	hypothetical protein
*	?	NC_002947	= 2653229	61 (1.030)	4 (0.070)	4/240	NT	6.1%	coding (616/948 nt)	PP_2325	2‑dehydropantoate 2‑reductase
	?	NC_002947	= 2653262	66 (1.190)					coding (649/948 nt)	PP_2325	2‑dehydropantoate 2‑reductase
*	?	NC_002947	2700177 =	44 (0.740)	3 (0.050)	3/248	NT	6.6%	coding (334/1263 nt)	fsr‑II	fosmidomycin efflux system
	?	NC_002947	2700210 =	42 (0.730)					coding (301/1263 nt)	fsr‑II	fosmidomycin efflux system
*	?	NC_002947	= 2713658	59 (1.000)	4 (0.070)	4/242	NT	6.4%	coding (1446/3708 nt)	metH	cobalamin‑dependent methionine synthase
	?	NC_002947	= 2713686	62 (1.110)					coding (1418/3708 nt)	metH	cobalamin‑dependent methionine synthase
*	?	NC_002947	2730804 =	57 (0.960)	6 (0.110)	6/236	NT	10.3%	coding (141/2361 nt)	polB	DNA polymerase II
	?	NC_002947	2730878 =	52 (0.950)					coding (215/2361 nt)	polB	DNA polymerase II
*	?	NC_002947	= 2758042	56 (0.950)	4 (0.070)	4/238	NT	7.0%	coding (150/1338 nt)	PP_2411	MFS transporter
	?	NC_002947	= 2758074	55 (1.000)					coding (118/1338 nt)	PP_2411	MFS transporter
*	?	NC_002947	= 2777203	49 (0.830)	6 (0.110)	4/244	NT	10.7%	coding (302/585 nt)	PP_2429	membrane protein
	?	NC_002947	= 2777224	53 (0.940)					coding (281/585 nt)	PP_2429	membrane protein
*	?	NC_002947	2780527 =	64 (1.080)	4 (0.070)	4/248	NT	6.2%	coding (301/480 nt)	PP_2433	hypothetical protein
	?	NC_002947	2780572 =	59 (1.030)					coding (346/480 nt)	PP_2433	hypothetical protein
*	?	NC_002947	= 2781605	61 (1.030)	4 (0.070)	4/244	NT	6.7%	coding (761/1218 nt)	iscS‑II	cysteine desulfurase
	?	NC_002947	= 2781641	53 (0.940)					coding (725/1218 nt)	iscS‑II	cysteine desulfurase
*	?	NC_002947	= 2786752	50 (0.850)	3 (0.050)	3/238	NT	6.4%	intergenic (‑84/‑238)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit
	?	NC_002947	= 2786780	42 (0.760)					intergenic (‑112/‑210)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit
*	?	NC_002947	2794768 =	44 (0.740)	3 (0.050)	3/248	NT	5.6%	coding (611/735 nt)	PP_2447	hypothetical protein
	?	NC_002947	2794820 =	58 (1.010)					coding (663/735 nt)	PP_2447	hypothetical protein
*	?	NC_002947	2825159 =	68 (1.150)	4 (0.070)	4/242	NT	5.8%	coding (772/2193 nt)	PP_2478	isoquinoline 1‑oxidoreductase subunit beta
	?	NC_002947	2825201 =	66 (1.180)					coding (814/2193 nt)	PP_2478	isoquinoline 1‑oxidoreductase subunit beta
*	?	NC_002947	2867028 =	56 (0.950)	3 (0.050)	3/246	NT	5.4%	intergenic (‑252/‑1317)	glllA/PP_2520	gallate dioxygenase/hypothetical protein
	?	NC_002947	2867091 =	52 (0.920)					intergenic (‑315/‑1254)	glllA/PP_2520	gallate dioxygenase/hypothetical protein
*	?	NC_002947	2873638 =	69 (1.170)	5 (0.090)	5/254	NT	7.0%	coding (418/474 nt)	cigR	membrane protein
	?	NC_002947	2873658 =	65 (1.110)					coding (438/474 nt)	cigR	membrane protein
*	?	NC_002947	2926875 =	69 (1.170)	4 (0.070)	4/242	NT	6.1%	coding (142/2472 nt)	PP_2565	UvrD/REP family helicase
	?	NC_002947	2926914 =	59 (1.060)					coding (181/2472 nt)	PP_2565	UvrD/REP family helicase
*	?	NC_002947	= 2942041	56 (0.950)	4 (0.070)	4/242	NT	7.1%	coding (159/474 nt)	PP_2575	hypothetical protein
	?	NC_002947	= 2942061	51 (0.910)					coding (139/474 nt)	PP_2575	hypothetical protein
*	?	NC_002947	= 2966096	59 (1.000)	4 (0.070)	4/242	NT	6.3%	coding (531/1758 nt)	PP_2595	ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 2966130	64 (1.150)					coding (497/1758 nt)	PP_2595	ABC transporter permease/ATP‑binding protein
*	?	NC_002947	2973220 =	59 (1.000)	5 (0.090)	5/242	NT	8.6%	coding (654/1713 nt)	PP_2600	hypothetical protein
	?	NC_002947	2973289 =	51 (0.910)					coding (585/1713 nt)	PP_2600	hypothetical protein
*	?	NC_002947	2975706 =	57 (0.960)	4 (0.070)	4/246	NT	6.9%	coding (724/1053 nt)	ligC	4‑carboxy‑2‑hydroxymuconate‑6‑semialdehyde dehydrogenase
	?	NC_002947	2975794 =	54 (0.950)					coding (812/1053 nt)	ligC	4‑carboxy‑2‑hydroxymuconate‑6‑semialdehyde dehydrogenase
*	?	NC_002947	2987370 =	NA (NA)	4 (0.070)	4/246	NT	NA	coding (1029/2991 nt)	PP_2612	membrane protein
	?	NC_002947	2987422 =	NA (NA)					coding (977/2991 nt)	PP_2612	membrane protein
*	?	NC_002947	2987604 =	NA (NA)	3 (0.050)	3/242	NT	NA	coding (795/2991 nt)	PP_2612	membrane protein
	?	NC_002947	2987647 =	NA (NA)					coding (752/2991 nt)	PP_2612	membrane protein
*	?	NC_002947	= 2987862	NA (NA)	5 (0.090)	5/244	NT	NA	coding (537/2991 nt)	PP_2612	membrane protein
	?	NC_002947	= 2987888	NA (NA)					coding (511/2991 nt)	PP_2612	membrane protein
*	?	NC_002947	= 3062581	56 (0.950)	4 (0.070)	4/238	NT	7.3%	coding (881/1896 nt)	qedH‑I	quinoprotein ethanol dehydrogenase
	?	NC_002947	= 3062619	50 (0.910)					coding (843/1896 nt)	qedH‑I	quinoprotein ethanol dehydrogenase
*	?	NC_002947	= 3072491	67 (1.130)	6 (0.110)	5/242	NT	8.4%	coding (197/1671 nt)	PP_2683	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3072513	68 (1.220)					coding (219/1671 nt)	PP_2683	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	3100009 =	44 (0.740)	3 (0.050)	3/242	NT	7.3%	coding (788/1470 nt)	PP_2709	long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	3100076 =	35 (0.630)					coding (855/1470 nt)	PP_2709	long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	3140748 =	51 (0.860)	3 (0.050)	3/246	NT	6.6%	coding (48/387 nt)	PP_2756	hypothetical protein
	?	NC_002947	3140802 =	36 (0.630)					coding (102/387 nt)	PP_2756	hypothetical protein
*	?	NC_002947	= 3153510	48 (0.810)	4 (0.070)	4/242	NT	8.4%	coding (771/990 nt)	PP_2769	branched‑chain amino acid ABC transporter permease
	?	NC_002947	= 3153536	42 (0.750)					coding (797/990 nt)	PP_2769	branched‑chain amino acid ABC transporter permease
*	?	NC_002947	= 3156837	49 (0.830)	3 (0.050)	3/248	NT	5.9%	coding (622/1188 nt)	PP_2772	monooxygenase
	?	NC_002947	= 3156867	48 (0.840)					coding (592/1188 nt)	PP_2772	monooxygenase
*	?	NC_002947	= 3160647	41 (0.690)	4 (0.070)	4/246	NT	7.7%	coding (561/1047 nt)	PP_2775	glycine betaine/L‑proline ABC transporter substrate‑binding protein
	?	NC_002947	= 3160695	57 (1.000)					coding (609/1047 nt)	PP_2775	glycine betaine/L‑proline ABC transporter substrate‑binding protein
*	?	NC_002947	= 3176221	46 (0.780)	3 (0.050)	3/240	NT	5.3%	coding (1522/2610 nt)	PP_2787	transporter
	?	NC_002947	= 3176271	64 (1.160)					coding (1572/2610 nt)	PP_2787	transporter
*	?	NC_002947	= 3186577	45 (0.760)	4 (0.070)	4/244	NT	8.0%	coding (193/1659 nt)	actP‑II	acetate permease
	?	NC_002947	= 3186643	49 (0.870)					coding (259/1659 nt)	actP‑II	acetate permease
*	?	NC_002947	= 3209806	48 (0.810)	4 (0.070)	4/234	NT	8.9%	intergenic (+67/+50)	PP_2813/PP_2814	BNR domain‑containing protein/hypothetical protein
	?	NC_002947	= 3209831	38 (0.700)					intergenic (+92/+25)	PP_2813/PP_2814	BNR domain‑containing protein/hypothetical protein
*	?	NC_002947	= 3229123	54 (0.910)	3 (0.050)	3/242	NT	5.3%	coding (580/1359 nt)	PP_2829	GntR family transcriptional regulator
	?	NC_002947	= 3229160	57 (1.020)					coding (617/1359 nt)	PP_2829	GntR family transcriptional regulator
*	?	NC_002947	3296377 =	58 (0.980)	4 (0.070)	4/236	NT	6.0%	intergenic (‑246/+6)	PP_2896/PP_2898	hypothetical protein/hypothetical protein
	?	NC_002947	3296441 =	71 (1.300)					coding (434/492 nt)	PP_2898	hypothetical protein
*	?	NC_002947	= 3299640	76 (1.290)	5 (0.090)	5/250	NT	6.5%	coding (1857/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ
	?	NC_002947	= 3299661	70 (1.210)					coding (1878/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ
*	?	NC_002947	= 3339138	34 (0.580)	3 (0.060)	3/212	NT	8.6%	intergenic (‑140/+103)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
	?	NC_002947	= 3339182	36 (0.740)					intergenic (‑184/+59)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
*	?	NC_002947	= 3339171	32 (0.540)	3 (0.050)	3/246	NT	7.4%	intergenic (‑173/+70)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
	?	NC_002947	= 3339248	44 (0.770)					coding (1580/1587 nt)	ybiT	ABC‑F family ATPase
*	?	NC_002947	= 3343823	69 (1.170)	4 (0.070)	4/248	NT	5.7%	coding (226/330 nt)	PP_5541	hypothetical protein
	?	NC_002947	= 3343856	65 (1.140)					coding (259/330 nt)	PP_5541	hypothetical protein
*	?	NC_002947	3369661 =	60 (1.020)	5 (0.090)	5/246	NT	7.9%	coding (2967/3015 nt)	PP_2964	transposase
	?	NC_002947	3369692 =	59 (1.040)					coding (2998/3015 nt)	PP_2964	transposase
*	?	NC_002947	3457714 =	47 (0.800)	3 (0.050)	3/244	NT	6.0%	coding (977/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease
	?	NC_002947	3457752 =	50 (0.890)					coding (939/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease
*	?	NC_002947	= 3459850	63 (1.070)	4 (0.070)	4/244	NT	6.7%	coding (512/1446 nt)	PP_3075	transcriptional regulator
	?	NC_002947	= 3459877	52 (0.920)					coding (485/1446 nt)	PP_3075	transcriptional regulator
*	?	NC_002947	3483144 =	48 (0.810)	5 (0.090)	5/246	NT	9.8%	coding (2780/3804 nt)	PP_3091	membrane protein
	?	NC_002947	3483187 =	46 (0.810)					coding (2737/3804 nt)	PP_3091	membrane protein
*	?	NC_002947	3491028 =	47 (0.800)	4 (0.070)	4/242	NT	9.2%	coding (363/2637 nt)	clpV	protein ClpV1
	?	NC_002947	3491058 =	35 (0.630)					coding (333/2637 nt)	clpV	protein ClpV1
*	?	NC_002947	= 3496375	57 (0.960)	3 (0.050)	3/240	NT	5.5%	coding (429/576 nt)	PP_3100	hypothetical protein
	?	NC_002947	= 3496415	50 (0.900)					coding (389/576 nt)	PP_3100	hypothetical protein
*	?	NC_002947	= 3511146	56 (0.950)	5 (0.090)	4/244	NT	8.7%	coding (342/522 nt)	PP_3107	hypothetical protein
	?	NC_002947	= 3511194	52 (0.920)					coding (390/522 nt)	PP_3107	hypothetical protein
*	?	NC_002947	= 3588116	34 (0.580)	5 (0.100)	5/216	NT	13.2%	intergenic (+37/‑38)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	= 3588144	37 (0.740)					intergenic (+65/‑10)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
*	?	NC_002947	= 3611287	61 (1.030)	3 (0.050)	3/244	NT	5.1%	coding (2397/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	= 3611333	54 (0.960)					coding (2351/3396 nt)	mcoA	Mn(II) copper oxidase A
*	?	NC_002947	= 3638865	58 (0.980)	3 (0.050)	3/246	NT	5.2%	coding (861/993 nt)	PP_3205	fumarylacetoacetate hydrolase family protein
	?	NC_002947	= 3638934	54 (0.950)					coding (930/993 nt)	PP_3205	fumarylacetoacetate hydrolase family protein
*	?	NC_002947	3642118 =	66 (1.120)	4 (0.070)	4/242	NT	6.7%	coding (1087/1431 nt)	PP_3209	isoxanthopterin deaminase
	?	NC_002947	3642183 =	49 (0.880)					coding (1022/1431 nt)	PP_3209	isoxanthopterin deaminase
*	?	NC_002947	3644750 =	66 (1.120)	7 (0.130)	6/242	NT	11.3%	coding (156/849 nt)	PP_3211	ABC transporter ATP‑binding protein
	?	NC_002947	3644779 =	47 (0.840)					coding (127/849 nt)	PP_3211	ABC transporter ATP‑binding protein
*	?	NC_002947	= 3649389	69 (1.170)	6 (0.110)	5/244	NT	8.5%	intergenic (+866/+825)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase
	?	NC_002947	= 3649415	64 (1.140)					intergenic (+892/+799)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase
*	?	NC_002947	= 3672982	42 (0.710)	3 (0.050)	3/240	NT	6.3%	coding (30/891 nt)	PP_3237	universal stress protein family protein
	?	NC_002947	= 3673037	50 (0.900)					coding (85/891 nt)	PP_3237	universal stress protein family protein
*	?	NC_002947	3676847 =	45 (0.760)	3 (0.050)	3/244	NT	6.7%	intergenic (‑2/‑151)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein
	?	NC_002947	3676903 =	40 (0.710)					intergenic (‑58/‑95)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein
*	?	NC_002947	= 3685928	61 (1.030)	4 (0.070)	4/248	NT	6.3%	coding (336/1332 nt)	PP_3251	hypothetical protein
	?	NC_002947	= 3685965	60 (1.050)					coding (373/1332 nt)	PP_3251	hypothetical protein
*	?	NC_002947	3694599 =	53 (0.900)	4 (0.070)	4/248	NT	7.1%	coding (1569/2502 nt)	ligD	DNA ligase D
	?	NC_002947	3694639 =	53 (0.930)					coding (1529/2502 nt)	ligD	DNA ligase D
*	?	NC_002947	= 3718681	61 (1.030)	4 (0.070)	4/238	NT	6.5%	coding (720/774 nt)	paaF	enoyl‑CoA hydratase/isomerase
	?	NC_002947	= 3718709	58 (1.060)					coding (692/774 nt)	paaF	enoyl‑CoA hydratase/isomerase
*	?	NC_002947	3721619 =	54 (0.910)	5 (0.090)	5/242	NT	8.6%	coding (585/798 nt)	fnrC	Crp/Fnr family transcriptional regulator
	?	NC_002947	3721668 =	55 (0.980)					coding (536/798 nt)	fnrC	Crp/Fnr family transcriptional regulator
*	?	NC_002947	3766125 =	52 (0.880)	3 (0.050)	3/238	NT	6.2%	coding (456/873 nt)	PP_5599	LysR family transcriptional regulator
	?	NC_002947	3766174 =	43 (0.780)					coding (505/873 nt)	PP_5599	LysR family transcriptional regulator
*	?	NC_002947	3769837 =	76 (1.290)	4 (0.070)	3/244	NT	5.7%	coding (1424/2187 nt)	PP_3330	ferric siderophore receptor
	?	NC_002947	3769879 =	61 (1.080)					coding (1466/2187 nt)	PP_3330	ferric siderophore receptor
*	?	NC_002947	= 3848194	53 (0.900)	4 (0.070)	3/242	NT	7.3%	coding (1284/1329 nt)	PP_3396	hypothetical protein
	?	NC_002947	= 3848226	52 (0.930)					coding (1316/1329 nt)	PP_3396	hypothetical protein
*	?	NC_002947	= 3860663	46 (0.780)	3 (0.050)	3/244	NT	6.5%	coding (214/615 nt)	PP_3412	LuxR family transcriptional regulator
	?	NC_002947	= 3860694	42 (0.750)					coding (245/615 nt)	PP_3412	LuxR family transcriptional regulator
*	?	NC_002947	3879643 =	42 (0.710)	3 (0.050)	3/244	NT	7.1%	coding (1478/3180 nt)	mexF	multidrug RND transporter MexF
	?	NC_002947	3879685 =	39 (0.690)					coding (1520/3180 nt)	mexF	multidrug RND transporter MexF
*	?	NC_002947	3881230 =	61 (1.030)	4 (0.070)	4/250	NT	6.6%	coding (3065/3180 nt)	mexF	multidrug RND transporter MexF
	?	NC_002947	3881324 =	54 (0.940)					coding (3159/3180 nt)	mexF	multidrug RND transporter MexF
*	?	NC_002947	= 3888127	50 (0.850)	3 (0.050)	3/242	NT	5.9%	coding (132/687 nt)	PP_3431	ThiJ/PfpI family protein
	?	NC_002947	= 3888157	49 (0.880)					coding (162/687 nt)	PP_3431	ThiJ/PfpI family protein
*	?	NC_002947	3891041 =	58 (0.980)	3 (0.050)	3/242	NT	5.0%	coding (25/1587 nt)	PP_3435	hypothetical protein
	?	NC_002947	3891104 =	58 (1.040)					coding (88/1587 nt)	PP_3435	hypothetical protein
*	?	NC_002947	= 3905311	56 (0.950)	3 (0.060)	3/236	NT	5.6%	coding (13/432 nt)	PP_3447	membrane protein
	?	NC_002947	= 3905366	49 (0.900)					intergenic (‑43/‑150)	PP_3447/nfrB	membrane protein/bacteriophage N4 receptor inner membrane subunit
*	?	NC_002947	3915087 =	51 (0.860)	9 (0.160)	8/244	NT	15.2%	coding (56/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein
	?	NC_002947	3915136 =	52 (0.920)					coding (105/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein
*	?	NC_002947	= 3916591	53 (0.900)	9 (0.160)	6/242	NT	15.6%	coding (373/3129 nt)	mexB	multidrug resistance protein MexB
	?	NC_002947	= 3916622	47 (0.840)					coding (404/3129 nt)	mexB	multidrug resistance protein MexB
*	?	NC_002947	= 3924360	56 (0.950)	4 (0.070)	4/242	NT	6.7%	coding (454/1431 nt)	peaB	quinohemoprotein amine dehydrogenase modification protein
	?	NC_002947	= 3924375	59 (1.060)					coding (439/1431 nt)	peaB	quinohemoprotein amine dehydrogenase modification protein
*	?	NC_002947	3946056 =	50 (0.850)	3 (0.050)	3/244	NT	5.8%	coding (243/810 nt)	PP_3482	hypothetical protein
	?	NC_002947	3946105 =	50 (0.890)					coding (194/810 nt)	PP_3482	hypothetical protein
*	?	NC_002947	= 3948573	69 (1.170)	4 (0.070)	4/242	NT	5.6%	coding (67/531 nt)	PP_3484	two‑component system response regulator
	?	NC_002947	= 3948596	69 (1.240)					coding (44/531 nt)	PP_3484	two‑component system response regulator
*	?	NC_002947	= 3984950	59 (1.000)	3 (0.050)	3/240	NT	5.1%	coding (234/855 nt)	PP_3513	LysR family transcriptional regulator
	?	NC_002947	= 3984991	56 (1.010)					coding (275/855 nt)	PP_3513	LysR family transcriptional regulator
*	?	NC_002947	= 4022750	57 (0.960)	8 (0.140)	4/240	NT	13.3%	intergenic (‑445/+223)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
	?	NC_002947	= 4022826	51 (0.920)					intergenic (‑521/+147)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
*	?	NC_002947	4026506 =	58 (0.980)	3 (0.050)	3/246	NT	5.4%	coding (508/633 nt)	PP_3551	LuxR family transcriptional regulator
	?	NC_002947	4026560 =	49 (0.860)					coding (454/633 nt)	PP_3551	LuxR family transcriptional regulator
*	?	NC_002947	4053733 =	74 (1.250)	4 (0.070)	4/242	NT	5.3%	coding (307/1320 nt)	PP_3573	monooxygenase
	?	NC_002947	4053774 =	74 (1.320)					coding (348/1320 nt)	PP_3573	monooxygenase
*	?	NC_002947	4062012 =	56 (0.950)	3 (0.050)	3/242	NT	5.5%	coding (64/306 nt)	PP_3580	hypothetical protein
	?	NC_002947	4062056 =	51 (0.910)					coding (108/306 nt)	PP_3580	hypothetical protein
*	?	NC_002947	= 4094749	56 (0.950)	7 (0.120)	6/246	NT	12.1%	coding (735/765 nt)	PP_3603	GntR family transcriptional regulator
	?	NC_002947	= 4094783	48 (0.850)					coding (701/765 nt)	PP_3603	GntR family transcriptional regulator
*	?	NC_002947	4115949 =	62 (1.050)	6 (0.110)	5/244	NT	8.7%	coding (637/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor
	?	NC_002947	4116004 =	67 (1.190)					coding (582/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor
*	?	NC_002947	4118007 =	60 (1.020)	4 (0.070)	4/244	NT	6.9%	coding (697/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta
	?	NC_002947	4118079 =	51 (0.910)					coding (769/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta
*	?	NC_002947	4127298 =	67 (1.130)	7 (0.130)	6/240	NT	10.1%	coding (63/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D
	?	NC_002947	4127337 =	62 (1.120)					coding (24/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D
*	?	NC_002947	4127468 =	59 (1.000)	3 (0.050)	3/242	NT	5.2%	intergenic (‑108/‑164)	opdT‑II/htrG	tyrosine‑specific outer membrane porin D/signal transduction protein
	?	NC_002947	4127492 =	54 (0.970)					intergenic (‑132/‑140)	opdT‑II/htrG	tyrosine‑specific outer membrane porin D/signal transduction protein
*	?	NC_002947	= 4130732	64 (1.080)	4 (0.070)	4/240	NT	6.1%	coding (331/687 nt)	PP_3634	GNAT family acetyltransferase
	?	NC_002947	= 4130826	63 (1.140)					coding (425/687 nt)	PP_3634	GNAT family acetyltransferase
*	?	NC_002947	4135844 =	66 (1.120)	7 (0.130)	4/238	NT	11.5%	coding (53/921 nt)	PP_3640	AraC family transcriptional regulator
	?	NC_002947	4135888 =	46 (0.840)					coding (97/921 nt)	PP_3640	AraC family transcriptional regulator
*	?	NC_002947	4139858 =	65 (1.100)	3 (0.050)	3/248	NT	5.2%	coding (791/1041 nt)	PP_3644	monooxygenase subunit
	?	NC_002947	4139899 =	47 (0.820)					coding (832/1041 nt)	PP_3644	monooxygenase subunit
*	?	NC_002947	= 4140889	54 (0.910)	3 (0.050)	3/242	NT	5.1%	coding (517/597 nt)	PP_5609	hypothetical protein
	?	NC_002947	= 4140908	60 (1.070)					coding (536/597 nt)	PP_5609	hypothetical protein
*	?	NC_002947	4173583 =	67 (1.130)	4 (0.070)	4/238	NT	6.2%	coding (196/573 nt)	PP_3672	hypothetical protein
	?	NC_002947	4173634 =	59 (1.070)					coding (145/573 nt)	PP_3672	hypothetical protein
*	?	NC_002947	4244718 =	48 (0.810)	3 (0.050)	3/248	NT	5.9%	coding (303/1191 nt)	aruH	arginine‑‑pyruvate transaminase AruH
	?	NC_002947	4244794 =	49 (0.860)					coding (227/1191 nt)	aruH	arginine‑‑pyruvate transaminase AruH
*	?	NC_002947	= 4254375	58 (0.980)	4 (0.070)	4/244	NT	6.4%	coding (1753/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4254411	61 (1.080)					coding (1717/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 4277499	52 (0.880)	3 (0.050)	3/244	NT	5.5%	coding (895/1236 nt)	glcF	glycolate oxidase iron‑sulfur subunit
	?	NC_002947	= 4277554	54 (0.960)					coding (950/1236 nt)	glcF	glycolate oxidase iron‑sulfur subunit
*	?	NC_002947	4281980 =	53 (0.900)	3 (0.050)	3/244	NT	5.7%	intergenic (‑557/+161)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator
	?	NC_002947	4282011 =	48 (0.850)					intergenic (‑588/+130)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator
*	?	NC_002947	= 4305587	82 (1.390)	5 (0.090)	5/246	NT	6.2%	coding (468/840 nt)	PP_3777	hypothetical protein
	?	NC_002947	= 4305630	72 (1.270)					coding (425/840 nt)	PP_3777	hypothetical protein
*	?	NC_002947	= 4316196	44 (0.740)	3 (0.050)	3/244	NT	6.5%	coding (279/1554 nt)	PP_3788	non‑ribosomal peptide synthetase
	?	NC_002947	= 4316253	45 (0.800)					coding (336/1554 nt)	PP_3788	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4344487	52 (0.880)	4 (0.070)	4/242	NT	7.2%	coding (63/1308 nt)	PP_3818	phosphate‑binding protein
	?	NC_002947	= 4344544	54 (0.970)					coding (120/1308 nt)	PP_3818	phosphate‑binding protein
*	?	NC_002947	= 4365977	60 (1.020)	3 (0.050)	3/240	NT	5.2%	coding (766/1098 nt)	PP_3842	hypothetical protein
	?	NC_002947	= 4365999	53 (0.960)					coding (788/1098 nt)	PP_3842	hypothetical protein
*	?	NC_002947	4403429 =	68 (1.150)	4 (0.070)	4/242	NT	6.3%	coding (152/468 nt)	PP_3882	terminase small subunit
	?	NC_002947	4403474 =	55 (0.980)					coding (107/468 nt)	PP_3882	terminase small subunit
*	?	NC_002947	= 4407467	75 (1.270)	4 (0.070)	4/244	NT	5.2%	coding (377/1299 nt)	PP_3889	putative Phage integrase
	?	NC_002947	= 4407483	74 (1.310)					coding (361/1299 nt)	PP_3889	putative Phage integrase
*	?	NC_002947	= 4433959	79 (1.340)	4 (0.070)	4/238	NT	5.0%	intergenic (+107/‑56)	PP_3928/PP_3929	hypothetical protein/hypothetical protein
	?	NC_002947	= 4433985	77 (1.400)					intergenic (+133/‑30)	PP_3928/PP_3929	hypothetical protein/hypothetical protein
*	?	NC_002947	= 4488679	NA (NA)	6 (0.160) +49 bp	6/158	NT	16.6%	intergenic (+32/+539)	PP_3981/PP_3982	transposase/hypothetical protein
	?	NC_002947	= 5035611	49 (0.830)					intergenic (+115/‑582)	PP_4439/PP_4441	transposase/transposase
*	?	NC_002947	4537518 =	NA (NA)	10 (0.180)	6/246	NT	34.2%	coding (853/1533 nt)	PP_4025	transposase
	?	NC_002947	= 4626625	20 (0.340)					coding (879/1533 nt)	PP_4091	transposase
*	?	NC_002947	= 4541305	49 (0.830)	4 (0.070)	4/246	NT	7.8%	coding (22/1503 nt)	nhaB	Na(+)/H(+) antiporter NhaB
	?	NC_002947	= 4541332	47 (0.830)					coding (49/1503 nt)	nhaB	Na(+)/H(+) antiporter NhaB
*	?	NC_002947	= 4551973	22 (0.370)	5 (0.110)	3/190	NT	22.1%	intergenic (+67/+114)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
	?	NC_002947	= 4552024	19 (0.430)					intergenic (+118/+63)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
*	?	NC_002947	= 4578331	54 (0.910)	4 (0.070)	4/240	NT	7.2%	coding (1780/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme
	?	NC_002947	= 4578355	52 (0.940)					coding (1756/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme
*	?	NC_002947	= 4586029	13 (0.220)	23 (0.430)	18/234	NT	68.8%	intergenic (+112/+103)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586109	9 (0.170)					intergenic (+192/+23)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4586034 =	13 (0.220)	6 (0.120)	7/212	NT	39.0%	intergenic (+117/+98)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586105 =	8 (0.160)					intergenic (+188/+27)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	= 4596827	74 (1.250)	5 (0.090)	5/238	NT	6.8%	coding (2982/3627 nt)	PP_4071	membrane protein
	?	NC_002947	= 4596876	68 (1.240)					coding (2933/3627 nt)	PP_4071	membrane protein
*	?	NC_002947	= 4600694	65 (1.100)	4 (0.070)	4/246	NT	6.3%	coding (578/1467 nt)	PP_4072	hypothetical protein
	?	NC_002947	= 4600711	56 (0.990)					coding (561/1467 nt)	PP_4072	hypothetical protein
*	?	NC_002947	= 4642974	69 (1.170)	4 (0.070)	3/238	NT	5.6%	intergenic (+20/‑160)	PP_4107/PP_4108	LysR family transcriptional regulator/4‑aminobutyrate aminotransferase
	?	NC_002947	= 4642997	70 (1.270)					intergenic (+43/‑137)	PP_4107/PP_4108	LysR family transcriptional regulator/4‑aminobutyrate aminotransferase
*	?	NC_002947	= 4653266	37 (0.630)	3 (0.050)	3/246	NT	7.0%	coding (107/333 nt)	PP_5659	hypothetical protein
	?	NC_002947	= 4653333	44 (0.770)					coding (174/333 nt)	PP_5659	hypothetical protein
*	?	NC_002947	= 4656534	50 (0.850)	3 (0.050)	3/248	NT	5.4%	coding (350/414 nt)	nuoA	NADH‑quinone oxidoreductase subunit A
	?	NC_002947	= 4656565	57 (1.000)					coding (381/414 nt)	nuoA	NADH‑quinone oxidoreductase subunit A
*	?	NC_002947	= 4658500	72 (1.220)	4 (0.070)	4/240	NT	5.7%	coding (1136/1782 nt)	nuoC	NADH‑quinone oxidoreductase subunit C/D
	?	NC_002947	= 4658517	65 (1.170)					coding (1153/1782 nt)	nuoC	NADH‑quinone oxidoreductase subunit C/D
*	?	NC_002947	4662033 =	51 (0.860)	4 (0.070)	4/240	NT	8.2%	coding (897/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G
	?	NC_002947	4662125 =	42 (0.760)					coding (989/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G
*	?	NC_002947	= 4683186	34 (0.580)	3 (0.060)	3/212	NT	7.9%	intergenic (+45/‑176)	mltD/PP_4146	membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein
	?	NC_002947	= 4683234	42 (0.860)					intergenic (+93/‑128)	mltD/PP_4146	membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein
*	?	NC_002947	4689028 =	52 (0.880)	4 (0.070)	4/234	NT	8.0%	coding (929/1020 nt)	PP_4149	ABC transporter permease
	?	NC_002947	4689061 =	44 (0.810)					coding (962/1020 nt)	PP_4149	ABC transporter permease
*	?	NC_002947	= 4702256	50 (0.850)	5 (0.090)	5/238	NT	8.6%	coding (1204/2055 nt)	kdpB	K+ transporting ATPase subunit KdpB
	?	NC_002947	= 4702277	60 (1.090)					coding (1183/2055 nt)	kdpB	K+ transporting ATPase subunit KdpB
*	?	NC_002947	= 4706389	58 (0.980)	4 (0.070)	4/244	NT	6.8%	coding (103/1053 nt)	PP_4162	membrane protein
	?	NC_002947	= 4706417	55 (0.980)					coding (75/1053 nt)	PP_4162	membrane protein
*	?	NC_002947	= 4711918	50 (0.850)	3 (0.050)	3/242	NT	5.4%	coding (150/2115 nt)	PP_4171	hypothetical protein
	?	NC_002947	= 4711939	57 (1.020)					coding (171/2115 nt)	PP_4171	hypothetical protein
*	?	NC_002947	4714407 =	69 (1.170)	7 (0.130)	6/242	NT	10.1%	coding (525/891 nt)	PP_4172	hypothetical protein
	?	NC_002947	4714456 =	60 (1.070)					coding (574/891 nt)	PP_4172	hypothetical protein
*	?	NC_002947	4714542 =	57 (0.960)	3 (0.050)	3/242	NT	5.3%	coding (660/891 nt)	PP_4172	hypothetical protein
	?	NC_002947	4714565 =	54 (0.970)					coding (683/891 nt)	PP_4172	hypothetical protein
*	?	NC_002947	= 4735578	36 (0.610)	3 (0.050)	3/240	NT	8.2%	coding (57/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
	?	NC_002947	= 4735611	33 (0.600)					coding (24/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
*	?	NC_002947	= 4747524	59 (1.000)	5 (0.090)	4/244	NT	7.7%	coding (238/750 nt)	etfB	electron transfer flavoprotein subunit beta
	?	NC_002947	= 4747569	64 (1.140)					coding (193/750 nt)	etfB	electron transfer flavoprotein subunit beta
*	?	NC_002947	4767338 =	45 (0.760)	5 (0.090)	4/246	NT	10.7%	coding (1991/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
	?	NC_002947	4767365 =	40 (0.700)					coding (2018/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
*	?	NC_002947	4780240 =	87 (1.470)	5 (0.090)	4/242	NT	6.3%	coding (7074/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4780277 =	67 (1.200)					coding (7037/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	4793188 =	74 (1.250)	4 (0.070)	4/246	NT	5.3%	coding (652/6525 nt)	pvdI	non‑ribosomal peptide synthetase
	?	NC_002947	4793224 =	71 (1.250)					coding (616/6525 nt)	pvdI	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4795079	66 (1.120)	4 (0.070)	3/244	NT	5.8%	intergenic (‑101/+5)	PP_4222/pvdH	protein SyrP/diaminobutyrate‑2‑oxoglutarate transaminase
	?	NC_002947	= 4795114	67 (1.190)					coding (1329/1359 nt)	pvdH	diaminobutyrate‑2‑oxoglutarate transaminase
*	?	NC_002947	= 4798741	15 (0.250)	5 (0.090)	5/238	NT	23.8%	intergenic (‑79/‑162)	qseB/PP_4226	two‑component system DNA‑binding transcriptional activator QseB/hypothetical protein
	?	NC_002947	= 4798772	18 (0.330)					intergenic (‑110/‑131)	qseB/PP_4226	two‑component system DNA‑binding transcriptional activator QseB/hypothetical protein
*	?	NC_002947	4808173 =	0 (0.000)	8 (0.140)	7/252	NT	25.4%	intergenic (‑282/‑273)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 4945372	47 (0.810)					intergenic (+732/+66)	PP_5673/flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
*	?	NC_002947	= 4808179	0 (0.000)	25 (0.470)	13/232	NT	47.6%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	55 (1.030)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4814531 =	66 (1.120)	5 (0.090)	4/240	NT	8.2%	coding (99/1203 nt)	PP_4240	microcin B17 processing protein McbD
	?	NC_002947	4814567 =	50 (0.900)					coding (135/1203 nt)	PP_4240	microcin B17 processing protein McbD
*	?	NC_002947	4830189 =	61 (1.030)	4 (0.070)	3/238	NT	6.6%	coding (1001/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	4830241 =	57 (1.040)					coding (949/12954 nt)	pvdL	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4864409	71 (1.200)	4 (0.070)	4/232	NT	5.9%	coding (1464/3489 nt)	smc	chromosome partition protein Smc
	?	NC_002947	= 4864434	63 (1.180)					coding (1439/3489 nt)	smc	chromosome partition protein Smc
*	?	NC_002947	4868046 =	72 (1.220)	4 (0.070)	4/250	NT	5.4%	coding (1243/1455 nt)	xdhA	xanthine dehydrogenase subunit XdhA
	?	NC_002947	4868123 =	70 (1.210)					coding (1320/1455 nt)	xdhA	xanthine dehydrogenase subunit XdhA
*	?	NC_002947	= 4876448	56 (0.950)	6 (0.110)	6/230	NT	9.7%	intergenic (+286/+151)	PP_4284/pucM	transporter/5‑hydroxyisourate hydrolase
	?	NC_002947	= 4876478	62 (1.170)					intergenic (+316/+121)	PP_4284/pucM	transporter/5‑hydroxyisourate hydrolase
*	?	NC_002947	= 4904213	61 (1.030)	3 (0.050)	3/240	NT	5.1%	coding (621/663 nt)	PP_4312	hypothetical protein
	?	NC_002947	= 4904245	54 (0.970)					coding (589/663 nt)	PP_4312	hypothetical protein
*	?	NC_002947	4930594 =	67 (1.130)	6 (0.110)	5/238	NT	8.7%	coding (379/789 nt)	cheZ	protein phosphatase CheZ
	?	NC_002947	4930639 =	63 (1.150)					coding (334/789 nt)	cheZ	protein phosphatase CheZ
*	?	NC_002947	4953460 =	37 (0.630)	8 (0.140)	7/240	NT	19.3%	coding (972/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4953515 =	32 (0.580)					coding (917/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	4963231 =	53 (0.900)	3 (0.050)	3/244	NT	5.6%	coding (424/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
	?	NC_002947	4963267 =	50 (0.890)					coding (388/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
*	?	NC_002947	= 4976313	39 (0.660)	4 (0.070)	4/240	NT	8.3%	coding (458/1155 nt)	flgJ	peptidoglycan hydrolase FlgJ
	?	NC_002947	= 4976408	52 (0.940)					coding (363/1155 nt)	flgJ	peptidoglycan hydrolase FlgJ
*	?	NC_002947	= 4990473	66 (1.120)	5 (0.090)	5/242	NT	6.9%	coding (659/1242 nt)	PP_4399	glutamine synthetase
	?	NC_002947	= 4990503	72 (1.290)					coding (629/1242 nt)	PP_4399	glutamine synthetase
*	?	NC_002947	5055940 =	46 (0.780)	4 (0.070)	4/244	NT	9.3%	coding (387/942 nt)	gsiC	glutathione ABC transporter permease
	?	NC_002947	5055976 =	34 (0.600)					coding (351/942 nt)	gsiC	glutathione ABC transporter permease
*	?	NC_002947	5090492 =	55 (0.930)	3 (0.050)	3/242	NT	6.0%	coding (445/1020 nt)	astA‑II	arginine N‑succinyltransferase subunit alpha
	?	NC_002947	5090540 =	42 (0.750)					coding (397/1020 nt)	astA‑II	arginine N‑succinyltransferase subunit alpha
*	?	NC_002947	= 5134678	49 (0.830)	3 (0.050)	3/246	NT	6.2%	coding (262/600 nt)	PP_4520	hypothetical protein
	?	NC_002947	= 5134729	44 (0.770)					coding (211/600 nt)	PP_4520	hypothetical protein
*	?	NC_002947	= 5135362	66 (1.120)	4 (0.070)	4/244	NT	5.8%	coding (1208/1566 nt)	PP_4521	aerotaxis receptor
	?	NC_002947	= 5135384	68 (1.210)					coding (1186/1566 nt)	PP_4521	aerotaxis receptor
*	?	NC_002947	5146607 =	58 (0.980)	3 (0.050)	3/246	NT	5.4%	coding (147/1323 nt)	srmB	ATP‑dependent DEAD‑box RNA helicase
	?	NC_002947	5146673 =	49 (0.860)					coding (81/1323 nt)	srmB	ATP‑dependent DEAD‑box RNA helicase
*	?	NC_002947	= 5147758	0 (0.000)	3 (0.050)	3/240	NT	100%	coding (863/1302 nt)	mscMB	miniconductance mechanosensitive channel protein
	?	NC_002947	= 5147823	NA (NA)					coding (928/1302 nt)	mscMB	miniconductance mechanosensitive channel protein
*	?	NC_002947	= 5164442	60 (1.020)	4 (0.070)	4/246	NT	6.6%	coding (3438/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	= 5164477	55 (0.970)					coding (3403/3906 nt)	hrpA	ATP‑dependent helicase HrpA
*	?	NC_002947	5177969 =	59 (1.000)	3 (0.050)	3/246	NT	5.1%	coding (16/1221 nt)	PP_4553	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	5178009 =	54 (0.950)					coding (479/486 nt)	PP_4554	hypothetical protein
*	?	NC_002947	= 5199250	63 (1.070)	4 (0.070)	4/246	NT	5.6%	coding (537/912 nt)	PP_4579	LysR family transcriptional regulator
	?	NC_002947	= 5199274	74 (1.300)					coding (561/912 nt)	PP_4579	LysR family transcriptional regulator
*	?	NC_002947	5210219 =	44 (0.740)	5 (0.100)	4/224	NT	12.1%	intergenic (‑85/+93)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
	?	NC_002947	5210310 =	34 (0.660)					intergenic (‑176/+2)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
*	?	NC_002947	5213292 =	68 (1.150)	3 (0.050)	3/238	NT	5.3%	coding (420/1182 nt)	PP_4594	cystathionine gamma‑synthase
	?	NC_002947	5213361 =	44 (0.800)					coding (351/1182 nt)	PP_4594	cystathionine gamma‑synthase
*	?	NC_002947	= 5228121	72 (1.220)	4 (0.070)	4/244	NT	5.6%	coding (938/2391 nt)	PP_4606	ferric siderophore receptor
	?	NC_002947	= 5228142	67 (1.190)					coding (917/2391 nt)	PP_4606	ferric siderophore receptor
*	?	NC_002947	5230839 =	61 (1.030)	4 (0.070)	4/246	NT	7.0%	coding (280/327 nt)	PP_4609	membrane protein
	?	NC_002947	5230880 =	47 (0.830)					coding (239/327 nt)	PP_4609	membrane protein
*	?	NC_002947	5237877 =	71 (1.200)	4 (0.070)	4/248	NT	5.7%	coding (337/387 nt)	PP_4614	hypothetical protein
	?	NC_002947	5237910 =	63 (1.100)					coding (370/387 nt)	PP_4614	hypothetical protein
*	?	NC_002947	= 5244969	53 (0.900)	4 (0.070)	4/248	NT	7.4%	coding (376/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	= 5245017	49 (0.860)					coding (424/834 nt)	hmgR	Hmg transcriptional repressor
*	?	NC_002947	= 5262156	56 (0.950)	6 (0.110)	6/240	NT	9.7%	coding (329/1488 nt)	PP_4638	methylenetetrahydrofolate reductase
	?	NC_002947	= 5262203	59 (1.060)					coding (376/1488 nt)	PP_4638	methylenetetrahydrofolate reductase
*	?	NC_002947	= 5263142	93 (1.570)	5 (0.090)	5/242	NT	5.3%	coding (1315/1488 nt)	PP_4638	methylenetetrahydrofolate reductase
	?	NC_002947	= 5263176	92 (1.650)					coding (1349/1488 nt)	PP_4638	methylenetetrahydrofolate reductase
*	?	NC_002947	= 5265857	44 (0.740)	3 (0.050)	3/246	NT	6.1%	coding (755/2067 nt)	yjiY	putative transporter
	?	NC_002947	= 5265887	50 (0.880)					coding (725/2067 nt)	yjiY	putative transporter
*	?	NC_002947	5273698 =	76 (1.290)	4 (0.070)	3/242	NT	5.5%	coding (845/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
	?	NC_002947	5273737 =	66 (1.180)					coding (884/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
*	?	NC_002947	5288394 =	24 (0.410)	5 (0.110)	4/196	NT	20.7%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5288488 =	20 (0.440)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	= 5291873	61 (1.030)	3 (0.050)	3/244	NT	5.3%	intergenic (+103/+89)	PP_4665/mmsB	hypothetical protein/3‑hydroxyisobutyrate dehydrogenase
	?	NC_002947	= 5291947	49 (0.870)					intergenic (+177/+15)	PP_4665/mmsB	hypothetical protein/3‑hydroxyisobutyrate dehydrogenase
*	?	NC_002947	= 5340395	72 (1.220)	8 (0.140)	6/246	NT	10.8%	coding (244/480 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
	?	NC_002947	= 5340435	63 (1.110)					coding (284/480 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
*	?	NC_002947	5343645 =	45 (0.760)	4 (0.070)	3/248	NT	8.4%	coding (885/1665 nt)	pgi‑II	glucose 6‑phosphate isomerase
	?	NC_002947	5343686 =	NA (NA)					coding (926/1665 nt)	pgi‑II	glucose 6‑phosphate isomerase
*	?	NC_002947	= 5361814	48 (0.810)	3 (0.050)	3/244	NT	5.3%	coding (546/756 nt)	tpiA	triose phosphate isomerase
	?	NC_002947	= 5361846	62 (1.100)					coding (514/756 nt)	tpiA	triose phosphate isomerase
*	?	NC_002947	= 5408544	71 (1.200)	4 (0.070)	4/252	NT	5.3%	coding (194/1308 nt)	PP_4752	Xaa‑Pro aminopeptidase
	?	NC_002947	= 5408568	72 (1.240)					coding (170/1308 nt)	PP_4752	Xaa‑Pro aminopeptidase
*	?	NC_002947	5416755 =	46 (0.780)	7 (0.130)	6/240	NT	15.5%	coding (929/1347 nt)	gudD	bifunctional D‑glucarate dehydratase/L‑idarate epimerase
	?	NC_002947	5416799 =	33 (0.600)					coding (885/1347 nt)	gudD	bifunctional D‑glucarate dehydratase/L‑idarate epimerase
*	?	NC_002947	5443506 =	78 (1.320)	4 (0.070)	4/236	NT	5.3%	coding (1274/1989 nt)	PP_4781	sensor histidine kinase
	?	NC_002947	5443547 =	72 (1.320)					coding (1233/1989 nt)	PP_4781	sensor histidine kinase
*	?	NC_002947	5448944 =	53 (0.900)	4 (0.070)	4/232	NT	7.3%	intergenic (‑45/‑188)	PP_4786/ybeZ	hypothetical protein/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	5449034 =	54 (1.010)					intergenic (‑135/‑98)	PP_4786/ybeZ	hypothetical protein/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	5464838 =	44 (0.740)	4 (0.070)	4/246	NT	6.8%	coding (280/651 nt)	lipB	octanoyltransferase
	?	NC_002947	5464939 =	67 (1.180)					coding (179/651 nt)	lipB	octanoyltransferase
*	?	NC_002947	= 5477130	24 (0.410)	15 (0.370)	10/174	NT	41.5%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477147	26 (0.650)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
*	?	NC_002947	5500882 =	43 (0.730)	4 (0.070)	4/246	NT	9.0%	coding (348/855 nt)	PP_4834	SPFH domain‑containing protein
	?	NC_002947	5500940 =	40 (0.700)					coding (406/855 nt)	PP_4834	SPFH domain‑containing protein
*	?	NC_002947	= 5502917	67 (1.130)	4 (0.070)	4/236	NT	6.0%	coding (365/432 nt)	PP_4837	hypothetical protein
	?	NC_002947	= 5502938	64 (1.170)					coding (386/432 nt)	PP_4837	hypothetical protein
*	?	NC_002947	= 5520635	64 (1.080)	6 (0.110)	5/246	NT	8.4%	coding (681/882 nt)	PP_4853	DMT superfamily permease
	?	NC_002947	= 5520670	70 (1.230)					coding (716/882 nt)	PP_4853	DMT superfamily permease
*	?	NC_002947	= 5536388	61 (1.030)	6 (0.100)	5/254	NT	9.1%	coding (193/828 nt)	nadE	NH(3)‑dependent NAD(+) synthetase
	?	NC_002947	= 5536414	59 (1.010)					coding (219/828 nt)	nadE	NH(3)‑dependent NAD(+) synthetase
*	?	NC_002947	5543748 =	51 (0.860)	3 (0.050)	3/240	NT	5.2%	coding (395/864 nt)	PP_4875	membrane protein
	?	NC_002947	5543800 =	61 (1.100)					coding (343/864 nt)	PP_4875	membrane protein
*	?	NC_002947	= 5566247	54 (0.910)	5 (0.090)	4/242	NT	8.7%	coding (1239/1899 nt)	mutL	DNA mismatch repair protein MutL
	?	NC_002947	= 5566288	54 (0.970)					coding (1198/1899 nt)	mutL	DNA mismatch repair protein MutL
*	?	NC_002947	5588328 =	82 (1.390)	4 (0.070)	4/242	NT	5.4%	coding (820/1905 nt)	parE	DNA topoisomerase IV subunit B
	?	NC_002947	5588393 =	62 (1.110)					coding (755/1905 nt)	parE	DNA topoisomerase IV subunit B
*	?	NC_002947	5594092 =	46 (0.780)	11 (0.240)	7/200	NT	24.2%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594185 =	33 (0.710)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5612889	45 (0.760)	6 (0.110)	6/244	NT	11.7%	coding (711/813 nt)	PP_4932	D‑arabinose 1‑dehydrogenase
	?	NC_002947	= 5612906	48 (0.850)					coding (728/813 nt)	PP_4932	D‑arabinose 1‑dehydrogenase
*	?	NC_002947	= 5628075	91 (1.540)	5 (0.090)	4/244	NT	5.2%	coding (456/837 nt)	rlmJ	23S rRNA (adenine(2030)‑N(6))‑methyltransferase
	?	NC_002947	= 5628112	94 (1.670)					coding (419/837 nt)	rlmJ	23S rRNA (adenine(2030)‑N(6))‑methyltransferase
*	?	NC_002947	5632333 =	62 (1.050)	4 (0.070)	4/244	NT	6.7%	coding (1863/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	NC_002947	5632376 =	52 (0.920)					coding (1906/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
*	?	NC_002947	= 5637950	63 (1.070)	4 (0.070)	4/246	NT	6.4%	coding (484/1443 nt)	PP_4949	TldD/PmbA family peptidase
	?	NC_002947	= 5638011	57 (1.000)					coding (545/1443 nt)	PP_4949	TldD/PmbA family peptidase
*	?	NC_002947	5648629 =	52 (0.880)	3 (0.050)	3/240	NT	5.6%	coding (437/540 nt)	ygjP	metal‑dependent hydrolase
	?	NC_002947	5648675 =	53 (0.960)					coding (391/540 nt)	ygjP	metal‑dependent hydrolase
*	?	NC_002947	5652405 =	76 (1.290)	4 (0.070)	4/246	NT	5.3%	coding (65/1065 nt)	fba	fructose‑bisphosphate aldolase
	?	NC_002947	5652444 =	70 (1.230)					coding (26/1065 nt)	fba	fructose‑bisphosphate aldolase
*	?	NC_002947	= 5681387	10 (0.170)	3 (0.050) +G	3/254	NT	33.5%	intergenic (‑105/+99)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
	?	NC_002947	= 5681415	2 (0.030)					intergenic (‑133/+71)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
*	?	NC_002947	= 5695942	66 (1.120)	4 (0.070)	4/242	NT	6.0%	coding (666/1272 nt)	pyrC'	dihydroorotase‑like protein
	?	NC_002947	= 5695977	64 (1.150)					coding (701/1272 nt)	pyrC'	dihydroorotase‑like protein
*	?	NC_002947	= 5699460	56 (0.950)	5 (0.090)	5/240	NT	9.0%	intergenic (+206/‑63)	PP_5002/phaA	hypothetical protein/poly(3‑hydroxyalkanoate) polymerase
	?	NC_002947	= 5699488	48 (0.870)					intergenic (+234/‑35)	PP_5002/phaA	hypothetical protein/poly(3‑hydroxyalkanoate) polymerase
*	?	NC_002947	= 5701083	57 (0.960)	4 (0.070)	3/244	NT	6.2%	coding (1561/1680 nt)	phaA	poly(3‑hydroxyalkanoate) polymerase
	?	NC_002947	= 5701143	67 (1.190)					coding (1621/1680 nt)	phaA	poly(3‑hydroxyalkanoate) polymerase
*	?	NC_002947	= 5709382	72 (1.220)	4 (0.070)	4/244	NT	6.3%	coding (3400/4761 nt)	PP_5009	hypothetical protein
	?	NC_002947	= 5709458	51 (0.910)					coding (3476/4761 nt)	PP_5009	hypothetical protein
*	?	NC_002947	= 5734041	58 (0.980)	5 (0.090)	5/232	NT	8.6%	intergenic (‑67/+90)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
	?	NC_002947	= 5734096	54 (1.010)					intergenic (‑122/+35)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
*	?	NC_002947	= 5783372	70 (1.180)	4 (0.070)	4/246	NT	5.9%	coding (1847/3309 nt)	kefA	intermediate mechanosensitive channel protein
	?	NC_002947	= 5783399	61 (1.070)					coding (1874/3309 nt)	kefA	intermediate mechanosensitive channel protein
*	?	NC_002947	= 5816852	47 (0.800)	14 (0.250)	7/238	NT	30.9%	intergenic (+38/+91)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5816917	19 (0.350)					intergenic (+103/+26)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	= 5823902	68 (1.150)	5 (0.090)	3/244	NT	7.2%	coding (838/1176 nt)	yggW	coproporphyrinogen/heterocyclic compound oxidase
	?	NC_002947	= 5823925	65 (1.150)					coding (861/1176 nt)	yggW	coproporphyrinogen/heterocyclic compound oxidase
*	?	NC_002947	5870261 =	34 (0.580)	5 (0.110)	5/198	NT	18.1%	intergenic (+22/+112)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	5870354 =	19 (0.420)					intergenic (+115/+19)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	5874548 =	55 (0.930)	4 (0.070)	4/234	NT	6.1%	intergenic (‑40/+108)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	5874630 =	73 (1.350)					intergenic (‑122/+26)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
*	?	NC_002947	5876984 =	59 (1.000)	3 (0.060)	3/208	NT	8.0%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877066 =	21 (0.440)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	5902127 =	55 (0.930)	3 (0.050)	3/240	NT	5.8%	coding (910/1089 nt)	PP_5175	HlyD family secretion protein
	?	NC_002947	5902217 =	46 (0.830)					coding (820/1089 nt)	PP_5175	HlyD family secretion protein
*	?	NC_002947	= 5903769	48 (0.810)	10 (0.180)	9/236	NT	14.4%	intergenic (+25/+82)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	= 5903831	75 (1.380)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	5914157 =	32 (0.540)	10 (0.220)	8/200	NT	25.6%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5914253 =	33 (0.710)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5914184	32 (0.540)	7 (0.150)	5/200	NT	19.4%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5914224	33 (0.710)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5923982	77 (1.300)	4 (0.070)	4/242	NT	5.6%	coding (449/2874 nt)	gcvP‑II	glycine dehydrogenase
	?	NC_002947	= 5924017	63 (1.130)					coding (414/2874 nt)	gcvP‑II	glycine dehydrogenase
*	?	NC_002947	= 5926828	53 (0.900)	3 (0.050)	3/240	NT	5.7%	coding (1067/1623 nt)	PP_5195	iron ABC transporter permease
	?	NC_002947	= 5926850	49 (0.880)					coding (1045/1623 nt)	PP_5195	iron ABC transporter permease
*	?	NC_002947	5927935 =	55 (0.930)	3 (0.060)	3/210	NT	7.5%	intergenic (‑41/+112)	PP_5195/fbpA	iron ABC transporter permease/iron ABC transporter substrate‑binding protein
	?	NC_002947	5928009 =	29 (0.600)					intergenic (‑115/+38)	PP_5195/fbpA	iron ABC transporter permease/iron ABC transporter substrate‑binding protein
*	?	NC_002947	= 5932367	55 (0.930)	3 (0.050)	3/244	NT	5.2%	coding (1034/1335 nt)	pepP	proline aminopeptidase P II
	?	NC_002947	= 5932388	56 (0.990)					coding (1013/1335 nt)	pepP	proline aminopeptidase P II
*	?	NC_002947	5932779 =	60 (1.020)	5 (0.090)	5/254	NT	7.4%	coding (622/1335 nt)	pepP	proline aminopeptidase P II
	?	NC_002947	5932808 =	65 (1.110)					coding (593/1335 nt)	pepP	proline aminopeptidase P II
*	?	NC_002947	5933742 =	70 (1.180)	4 (0.070)	4/246	NT	6.6%	coding (235/555 nt)	PP_5201	hypothetical protein
	?	NC_002947	5933781 =	46 (0.810)					coding (196/555 nt)	PP_5201	hypothetical protein
*	?	NC_002947	= 5936586	59 (1.000)	3 (0.050)	3/246	NT	5.3%	coding (103/960 nt)	yhiI	translation‑like protein
	?	NC_002947	= 5936605	50 (0.880)					coding (122/960 nt)	yhiI	translation‑like protein
*	?	NC_002947	= 5952647	71 (1.200)	4 (0.070)	4/236	NT	5.5%	coding (310/2184 nt)	ppk	polyphosphate kinase
	?	NC_002947	= 5952674	71 (1.300)					coding (283/2184 nt)	ppk	polyphosphate kinase
*	?	NC_002947	= 5953185	75 (1.270)	5 (0.090)	5/240	NT	6.5%	intergenic (‑229/‑45)	ppk/PP_5218	polyphosphate kinase/DedA family protein
	?	NC_002947	= 5953200	73 (1.320)					intergenic (‑244/‑30)	ppk/PP_5218	polyphosphate kinase/DedA family protein
*	?	NC_002947	5968327 =	69 (1.170)	4 (0.070)	4/244	NT	6.7%	coding (245/360 nt)	PP_5723	hypothetical protein
	?	NC_002947	5968377 =	45 (0.800)					coding (195/360 nt)	PP_5723	hypothetical protein
*	?	NC_002947	5970657 =	61 (1.030)	4 (0.070)	4/244	NT	6.9%	coding (637/2124 nt)	PP_5236	hypothetical protein
	?	NC_002947	5970718 =	50 (0.890)					coding (576/2124 nt)	PP_5236	hypothetical protein
*	?	NC_002947	= 5971206	52 (0.880)	4 (0.070)	4/242	NT	6.9%	coding (88/2124 nt)	PP_5236	hypothetical protein
	?	NC_002947	= 5971218	59 (1.060)					coding (76/2124 nt)	PP_5236	hypothetical protein
*	?	NC_002947	= 5985929	63 (1.070)	4 (0.070)	4/246	NT	6.4%	coding (196/987 nt)	PP_5245	AraC family transcriptional regulator
	?	NC_002947	= 5985981	57 (1.000)					coding (248/987 nt)	PP_5245	AraC family transcriptional regulator
*	?	NC_002947	= 5987423	47 (0.800)	4 (0.070)	4/238	NT	8.2%	coding (505/1788 nt)	kefB‑III	glutathione‑regulated potassium/H+ antiporter
	?	NC_002947	= 5987457	46 (0.840)					coding (539/1788 nt)	kefB‑III	glutathione‑regulated potassium/H+ antiporter
*	?	NC_002947	= 5989280	64 (1.080)	3 (0.060)	3/228	NT	5.7%	noncoding (29/87 nt)	PP_mr64	C4 ncRNA
	?	NC_002947	= 5989327	42 (0.800)					noncoding (76/87 nt) coding (38/399 nt)	PP_mr64 PP_5247	C4 ncRNA hypothetical protein
*	?	NC_002947	= 6019270	43 (0.730)	3 (0.060)	3/210	NT	7.0%	intergenic (‑71/+74)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6019300	45 (0.930)					intergenic (‑101/+44)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
*	?	NC_002947	= 6090247	79 (1.340)	6 (0.110)	5/242	NT	7.6%	coding (1240/1530 nt)	PP_5342	GntR family transcriptional regulator
	?	NC_002947	= 6090280	72 (1.290)					coding (1207/1530 nt)	PP_5342	GntR family transcriptional regulator